AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008820.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008820.01.T01 MTR_2g450530 96.755 339 11 0 8 346 4 342 0.0 687
MsG0280008820.01.T01 MTR_2g450530 99.206 252 2 0 95 346 26 277 0.0 518
MsG0280008820.01.T01 MTR_3g074250 48.438 320 147 5 36 346 31 341 5.89e-100 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008820.01.T01 AT2G41040 63.920 352 121 3 1 346 1 352 1.92e-160 453
MsG0280008820.01.T01 AT1G78140 52.921 291 128 5 64 346 65 354 3.59e-101 302

Find 107 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACATATGGACCAAATT+TGG 0.191655 2:+39348367 None:intergenic
CTGGATCTGACAGTGACTTC+TGG 0.199104 2:-39351686 MsG0280008820.01.T01:CDS
TCCCGAAAATTTGCCAAATC+TGG 0.210877 2:-39350702 MsG0280008820.01.T01:CDS
CTGGTGCTGCTTTGCATTGT+TGG 0.228378 2:-39350391 MsG0280008820.01.T01:CDS
TTGTAAGAGCAGATGTTTCT+AGG 0.235494 2:-39350451 MsG0280008820.01.T01:CDS
GAGGTTGGCGTCAAAATTTC+AGG 0.262886 2:-39351288 MsG0280008820.01.T01:CDS
TTCAGGCAAAGTGGCTTTCC+TGG 0.278494 2:-39351271 MsG0280008820.01.T01:CDS
TCTAGGCTTCCCTTTGAATC+AGG 0.297752 2:-39350434 MsG0280008820.01.T01:CDS
TCTTAGTACACGGGTGATTT+CGG 0.316192 2:+39348967 None:intergenic
GTTACACTTCATCAACTTCC+TGG 0.317997 2:-39348910 MsG0280008820.01.T01:CDS
TCCAGAGTAGGTTCCAGATT+TGG 0.320022 2:+39350689 None:intergenic
AGAAGCCATAAAACCAAATT+TGG 0.333090 2:-39348380 MsG0280008820.01.T01:exon
CAAATCGGACTGAACTCTTT+AGG 0.349869 2:-39351637 MsG0280008820.01.T01:intron
CTAAAGAGTTCAGTCCGATT+TGG 0.357525 2:+39351638 None:intergenic
TCAATGGTTCATAACATATA+GGG 0.366384 2:+39352040 None:intergenic
CACTAGCAAAGACGGGTATC+TGG 0.366593 2:-39351705 MsG0280008820.01.T01:CDS
TACAGATGTTATTTATAAAT+CGG 0.367282 2:+39348168 None:intergenic
AGGCACGAATATTGAACCTT+TGG 0.368132 2:+39353439 None:intergenic
GGGAATTGTATTTGATTAAG+AGG 0.373335 2:+39353522 None:intergenic
AGAAATGAAAAGGTGAAAAC+TGG 0.382522 2:-39348264 MsG0280008820.01.T01:three_prime_UTR
ATCAATGGTTCATAACATAT+AGG 0.384751 2:+39352039 None:intergenic
TGGATCTGACAGTGACTTCT+GGG 0.394949 2:-39351685 MsG0280008820.01.T01:CDS
GGCACGAATATTGAACCTTT+GGG 0.413534 2:+39353440 None:intergenic
GACGCCAACCTCTTTCATAT+AGG 0.414654 2:+39351299 None:intergenic
TTAAGTACGAAGCAGGATAA+AGG 0.419613 2:-39352087 MsG0280008820.01.T01:CDS
CAGAGGTCTTCTCTTGGCTA+TGG 0.425902 2:-39348501 MsG0280008820.01.T01:CDS
AGAAGTGGTGGAGTATTTGT+TGG 0.446578 2:-39348947 MsG0280008820.01.T01:CDS
TGAGCCTGCTAAAGGTGGTC+TGG 0.449671 2:-39350757 MsG0280008820.01.T01:CDS
ATCAAATATTCTTGAAGTTG+AGG 0.451966 2:-39348073 MsG0280008820.01.T01:three_prime_UTR
ACGAGAATCAATGTTACATA+TGG 0.465284 2:+39348356 None:intergenic
AAGAGTTTACCTCTCTGAAC+AGG 0.467690 2:+39348879 None:intergenic
TAGAAACATCTGCTCTTACA+AGG 0.471408 2:+39350453 None:intergenic
ATTGTAGTAGAATGGAGAAT+CGG 0.471524 2:+39353585 None:intergenic
TTACACTTCATCAACTTCCT+GGG 0.474826 2:-39348909 MsG0280008820.01.T01:CDS
GCCAAATCTGGAACCTACTC+TGG 0.475484 2:-39350690 MsG0280008820.01.T01:CDS
TCATAGCATATCTGTCTTGT+GGG 0.476849 2:+39348095 None:intergenic
TCTGAACAGGCGTGCAACCC+AGG 0.477280 2:+39348892 None:intergenic
ATGTTGAAGTTCAACCAAAT+CGG 0.478110 2:-39351652 MsG0280008820.01.T01:CDS
TGCCTCCTCTGCTGTTGTTG+TGG 0.483280 2:-39353421 MsG0280008820.01.T01:CDS
TATGAACCATTGATAAGAAA+AGG 0.483602 2:-39352030 MsG0280008820.01.T01:CDS
GTTTCATTCCTATATGAAAG+AGG 0.483857 2:-39351307 MsG0280008820.01.T01:CDS
AGGTCAGCAATATACAGGTC+TGG 0.485814 2:-39351758 MsG0280008820.01.T01:CDS
TAAATATGCCAGAAATGAAA+AGG 0.486163 2:-39348274 MsG0280008820.01.T01:three_prime_UTR
ATCATAGCATATCTGTCTTG+TGG 0.486616 2:+39348094 None:intergenic
TAATGAAATCGTAGCATTGA+CGG 0.490015 2:+39350634 None:intergenic
AGACATATTACTTACAGCAT+TGG 0.490607 2:+39350358 None:intergenic
TATTTGCAGAGGTCTTCTCT+TGG 0.492782 2:-39348507 MsG0280008820.01.T01:intron
CTTTATAATGCAGTTCAGAA+TGG 0.495463 2:-39350793 MsG0280008820.01.T01:intron
GGAGAAGGCGAGGGCGAAAG+TGG 0.497259 2:+39353472 None:intergenic
ATCAACTGAACCTGATTCAA+AGG 0.500328 2:+39350424 None:intergenic
ACTTCAGGTCAGCAATATAC+AGG 0.502396 2:-39351763 MsG0280008820.01.T01:intron
TTGTAGTAGAATGGAGAATC+GGG 0.502756 2:+39353586 None:intergenic
CATTCCTATATGAAAGAGGT+TGG 0.503405 2:-39351303 MsG0280008820.01.T01:CDS
CATATTACTTACAGCATTGG+AGG 0.505667 2:+39350361 None:intergenic
TCAGGATTTAAGTACGAAGC+AGG 0.508485 2:-39352094 MsG0280008820.01.T01:intron
GTATTTGATTAAGAGGATGA+AGG 0.509877 2:+39353529 None:intergenic
TTTGGGTTTGAGAGCGGAGA+AGG 0.511189 2:+39353457 None:intergenic
ACTTACAAGTTAAGACCAAC+GGG 0.516370 2:+39352006 None:intergenic
AAGCGGTCATTGTAGTAGAA+TGG 0.518658 2:+39353577 None:intergenic
CTCCACCACTTCTTAGTACA+CGG 0.524333 2:+39348957 None:intergenic
AAATCGTACACTAGCAAAGA+CGG 0.529071 2:-39351713 MsG0280008820.01.T01:CDS
CTCCACAACAACAGCAGAGG+AGG 0.537134 2:+39353419 None:intergenic
GAGTACTTTGAGCCTGCTAA+AGG 0.538931 2:-39350765 MsG0280008820.01.T01:CDS
GTCGATGTTAGCTGTGGAAG+TGG 0.544771 2:-39350732 MsG0280008820.01.T01:CDS
GGCTGAAAATGGGACACAGT+GGG 0.546515 2:-39353660 None:intergenic
CTTTCCTGGTCCTGATGAAG+AGG 0.548244 2:-39351257 MsG0280008820.01.T01:intron
AGCAGCGGTAGTAGCAGAAG+CGG 0.549169 2:+39353560 None:intergenic
CGTCAAAATTTCAGGCAAAG+TGG 0.551579 2:-39351280 MsG0280008820.01.T01:CDS
AAAACTGGAGTGTCTAGTAA+AGG 0.553348 2:-39348249 MsG0280008820.01.T01:three_prime_UTR
ACAACCAGACCACCTTTAGC+AGG 0.554571 2:+39350753 None:intergenic
TCAACTGAACCTGATTCAAA+GGG 0.558064 2:+39350425 None:intergenic
TCTAGTAAAGGTTCACAGGT+TGG 0.559185 2:-39348237 MsG0280008820.01.T01:three_prime_UTR
CTTACAGCATTGGAGGGAGA+TGG 0.562732 2:+39350368 None:intergenic
CAATATATTGAAATATGTAG+TGG 0.562805 2:-39348045 MsG0280008820.01.T01:three_prime_UTR
GTTTGAGAGCGGAGAAGGCG+AGG 0.563644 2:+39353462 None:intergenic
AAAGACCTTTGCACTTCATG+TGG 0.572535 2:-39348456 MsG0280008820.01.T01:CDS
AGTGTCTAGTAAAGGTTCAC+AGG 0.572867 2:-39348241 MsG0280008820.01.T01:three_prime_UTR
TCAGTTGATGCGGTTCATGC+TGG 0.573330 2:-39350410 MsG0280008820.01.T01:CDS
TGAAGTGTAACGAAGAAAAG+TGG 0.578444 2:+39348922 None:intergenic
AACTTACAAGTTAAGACCAA+CGG 0.579343 2:+39352005 None:intergenic
TGAATCAGGTTCAGTTGATG+CGG 0.582742 2:-39350420 MsG0280008820.01.T01:CDS
TGGGGAAGAAAGAAGCTTGG+CGG 0.585272 2:-39353641 MsG0280008820.01.T01:five_prime_UTR
TTTGAGAGCGGAGAAGGCGA+GGG 0.588926 2:+39353463 None:intergenic
TTCATATAGGAATGAAACAA+GGG 0.589684 2:+39351312 None:intergenic
TGAACCTTTGGGTTTGAGAG+CGG 0.595270 2:+39353451 None:intergenic
TTGATAAGAAAAGGTCCCGT+TGG 0.597047 2:-39352021 MsG0280008820.01.T01:CDS
GAGAAGGCGAGGGCGAAAGT+GGG 0.600598 2:+39353473 None:intergenic
AATCGTACACTAGCAAAGAC+GGG 0.601636 2:-39351712 MsG0280008820.01.T01:CDS
TAGAGCAATTACTCCAGAGT+AGG 0.603186 2:+39350677 None:intergenic
ATGAAGGAAATGAGAAGCAG+CGG 0.603500 2:+39353545 None:intergenic
TGTTGTTGTGGAGTCTCCGT+CGG 0.604285 2:-39353409 MsG0280008820.01.T01:intron
TACTTTGAGCCTGCTAAAGG+TGG 0.614743 2:-39350762 MsG0280008820.01.T01:CDS
TATACCTCTTCATCAGGACC+AGG 0.614822 2:+39351253 None:intergenic
AGAAACATCTGCTCTTACAA+GGG 0.617587 2:+39350454 None:intergenic
TTCTCCGCTCTCAAACCCAA+AGG 0.617708 2:-39353455 MsG0280008820.01.T01:CDS
TTTCATATAGGAATGAAACA+AGG 0.621014 2:+39351311 None:intergenic
ATATTACTTACAGCATTGGA+GGG 0.629930 2:+39350362 None:intergenic
ATCACCCGTGTACTAAGAAG+TGG 0.637175 2:-39348962 MsG0280008820.01.T01:CDS
TAAGACCACATGAAGTGCAA+AGG 0.637387 2:+39348451 None:intergenic
CAGTGGGGAAGAAAGAAGCT+TGG 0.637931 2:-39353644 MsG0280008820.01.T01:five_prime_UTR
ACCCGTGTACTAAGAAGTGG+TGG 0.640111 2:-39348959 MsG0280008820.01.T01:CDS
TCCACCACTTCTTAGTACAC+GGG 0.645948 2:+39348958 None:intergenic
CTGGTTGTCGATGTTAGCTG+TGG 0.654300 2:-39350738 MsG0280008820.01.T01:CDS
AGACTCCACAACAACAGCAG+AGG 0.656848 2:+39353416 None:intergenic
GCTGAAAATGGGACACAGTG+GGG 0.668207 2:-39353659 None:intergenic
TCATATAGGAATGAAACAAG+GGG 0.670366 2:+39351313 None:intergenic
GGTTGCACGCCTGTTCAGAG+AGG 0.704688 2:-39348888 MsG0280008820.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTCAAATCTATATATTA+AGG + Chr2:39352570-39352589 None:intergenic 10.0%
!! TATTAATATCAATTTGATAA+GGG + Chr2:39352942-39352961 None:intergenic 10.0%
!!! TCTAAAATATAATAAAAAAC+AGG + Chr2:39348672-39348691 None:intergenic 10.0%
!!! TTTTTTATTATATTTTAGAC+TGG - Chr2:39348673-39348692 MsG0280008820.01.T01:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + Chr2:39348971-39348990 None:intergenic 100.0%
!! AAAATTATAATTTATACCGA+CGG + Chr2:39348280-39348299 None:intergenic 15.0%
!! AAACTAAATTTAAACAACTT+GGG + Chr2:39348468-39348487 None:intergenic 15.0%
!! AAATCTATATATTAAGGAAA+TGG + Chr2:39352564-39352583 None:intergenic 15.0%
!! ATAAATTCAAAATCAAGTAA+AGG + Chr2:39351100-39351119 None:intergenic 15.0%
!! CTATTAATATCAATTTGATA+AGG + Chr2:39352943-39352962 None:intergenic 15.0%
!! TAAATCAACAAATATAATTG+TGG + Chr2:39352048-39352067 None:intergenic 15.0%
!! TACAAATATTATTCAAGTAT+GGG + Chr2:39350474-39350493 None:intergenic 15.0%
!! TTGAAAATTCTTTGTATTAA+AGG - Chr2:39351420-39351439 MsG0280008820.01.T01:intron 15.0%
!!! ACAAAAAAACTTTTATTGAA+CGG + Chr2:39350667-39350686 None:intergenic 15.0%
!!! ACGTAATTTTTTTTTAAACT+CGG + Chr2:39352423-39352442 None:intergenic 15.0%
!!! ATTTGTAGTTATTGTTTTAA+AGG - Chr2:39350487-39350506 MsG0280008820.01.T01:intron 15.0%
!!! TACAGATGTTATTTATAAAT+CGG + Chr2:39353505-39353524 None:intergenic 15.0%
!!! TTATTGTTTTAAAGGTATTT+TGG - Chr2:39350495-39350514 MsG0280008820.01.T01:intron 15.0%
!! AAAAGTTAGTCAAAGAAAAT+TGG - Chr2:39348615-39348634 MsG0280008820.01.T01:intron 20.0%
!! AAATAGAAATGTAAATCACA+AGG + Chr2:39352620-39352639 None:intergenic 20.0%
!! AACTATCATGCTAATTAATT+AGG + Chr2:39351489-39351508 None:intergenic 20.0%
!! AATTCAAATATCTATAGAAG+TGG + Chr2:39351736-39351755 None:intergenic 20.0%
!! ACAATTCTCATATGAAAATT+CGG + Chr2:39352497-39352516 None:intergenic 20.0%
!! ACATTATATTCATAATTCGT+TGG + Chr2:39351128-39351147 None:intergenic 20.0%
!! ATACAAAATAGATTGTTACA+TGG - Chr2:39350061-39350080 MsG0280008820.01.T01:intron 20.0%
!! ATCTTTAAATCATCTTGAAT+CGG + Chr2:39353138-39353157 None:intergenic 20.0%
!! ATTTCACACTATTTAAATGA+GGG - Chr2:39352636-39352655 MsG0280008820.01.T01:intron 20.0%
!! ATTTGAGAAATCACATATAT+CGG - Chr2:39349754-39349773 MsG0280008820.01.T01:intron 20.0%
!! CAAACTAAATTTAAACAACT+TGG + Chr2:39348469-39348488 None:intergenic 20.0%
!! CAATATATTGAAATATGTAG+TGG - Chr2:39353625-39353644 MsG0280008820.01.T01:five_prime_UTR 20.0%
!! CACTCTTATAAACTATTATT+TGG + Chr2:39351940-39351959 None:intergenic 20.0%
!! CTACAAATATTATTCAAGTA+TGG + Chr2:39350475-39350494 None:intergenic 20.0%
!! GTACTAAATTAAAACCATTT+AGG + Chr2:39348492-39348511 None:intergenic 20.0%
!! TATTTCACACTATTTAAATG+AGG - Chr2:39352635-39352654 MsG0280008820.01.T01:intron 20.0%
!! TCAACAAATAAATGGAAAAA+TGG + Chr2:39350218-39350237 None:intergenic 20.0%
!! TGGAAAAATGGATATTTAAA+AGG + Chr2:39350206-39350225 None:intergenic 20.0%
!! TGTTATTAATTAAGCTCAAA+AGG + Chr2:39350795-39350814 None:intergenic 20.0%
!! TTAGAAAGAATTCAAGATAT+TGG - Chr2:39349467-39349486 MsG0280008820.01.T01:intron 20.0%
!!! AAATTATTTTCATGTCAATG+TGG - Chr2:39352585-39352604 MsG0280008820.01.T01:intron 20.0%
!!! ACTTGATTTTGAATTTATTG+CGG - Chr2:39351102-39351121 MsG0280008820.01.T01:intron 20.0%
!!! ATTATTTGGTGAATTTTATG+CGG + Chr2:39351926-39351945 None:intergenic 20.0%
!!! ATTTTTCCATTTATTTGTTG+AGG - Chr2:39350217-39350236 MsG0280008820.01.T01:intron 20.0%
!!! CAAAAAAACTTTTATTGAAC+GGG + Chr2:39350666-39350685 None:intergenic 20.0%
!!! GAAGTCTTTTATTATGTTTA+CGG - Chr2:39353264-39353283 MsG0280008820.01.T01:intron 20.0%
!!! TCAAGTAATATTTTGTATTG+CGG - Chr2:39351987-39352006 MsG0280008820.01.T01:intron 20.0%
!!! TTAAATTTAGTTTGCCTAAA+TGG - Chr2:39348475-39348494 MsG0280008820.01.T01:CDS 20.0%
! AAAAAAATTACGTAACGTGT+AGG - Chr2:39352430-39352449 MsG0280008820.01.T01:intron 25.0%
! AAAGGATATTGTACAAATAC+TGG + Chr2:39350188-39350207 None:intergenic 25.0%
! AAATGATAACTCACAACAAA+AGG + Chr2:39352900-39352919 None:intergenic 25.0%
! AAATGTAAATCACAAGGATA+AGG + Chr2:39352614-39352633 None:intergenic 25.0%
! AAGATATTCCCTTTCTATAA+AGG + Chr2:39350613-39350632 None:intergenic 25.0%
! AATTCAAAATCAAGTAAAGG+AGG + Chr2:39351097-39351116 None:intergenic 25.0%
! AGAAAAACATGTTATAGAGT+CGG - Chr2:39349219-39349238 MsG0280008820.01.T01:intron 25.0%
! AGATCACGTTAAATAAGAAA+TGG - Chr2:39351880-39351899 MsG0280008820.01.T01:intron 25.0%
! ATCAAATATTCTTGAAGTTG+AGG - Chr2:39353597-39353616 MsG0280008820.01.T01:five_prime_UTR 25.0%
! ATCAACAAATATAATTGTGG+AGG + Chr2:39352045-39352064 None:intergenic 25.0%
! ATCAATGGTTCATAACATAT+AGG + Chr2:39349634-39349653 None:intergenic 25.0%
! ATGACTAATCCTTTATAGAA+AGG - Chr2:39350601-39350620 MsG0280008820.01.T01:intron 25.0%
! CAATTCTCATATGAAAATTC+GGG + Chr2:39352496-39352515 None:intergenic 25.0%
! CGTTAATAGAGAAAATGAAA+AGG + Chr2:39348309-39348328 None:intergenic 25.0%
! GATCACGTTAAATAAGAAAT+GGG - Chr2:39351881-39351900 MsG0280008820.01.T01:intron 25.0%
! GTCAAATTTCAACTTCTTAA+AGG - Chr2:39352677-39352696 MsG0280008820.01.T01:intron 25.0%
! TAAATATGCCAGAAATGAAA+AGG - Chr2:39353396-39353415 MsG0280008820.01.T01:intron 25.0%
! TAGAGAAAATGAAAAGGAAA+AGG + Chr2:39348303-39348322 None:intergenic 25.0%
! TATGAACCATTGATAAGAAA+AGG - Chr2:39349640-39349659 MsG0280008820.01.T01:intron 25.0%
! TATGTGCAAAAATAGTGATT+TGG - Chr2:39353531-39353550 MsG0280008820.01.T01:CDS 25.0%
! TCAACAAATATAATTGTGGA+GGG + Chr2:39352044-39352063 None:intergenic 25.0%
! TCAATGGTTCATAACATATA+GGG + Chr2:39349633-39349652 None:intergenic 25.0%
! TGACTAATCCTTTATAGAAA+GGG - Chr2:39350602-39350621 MsG0280008820.01.T01:intron 25.0%
! TTCATATAGGAATGAAACAA+GGG + Chr2:39350361-39350380 None:intergenic 25.0%
! TTGTGTATCAGTTAACAAAA+TGG + Chr2:39348414-39348433 None:intergenic 25.0%
! TTTATAGAAAGGGAATATCT+TGG - Chr2:39350612-39350631 MsG0280008820.01.T01:CDS 25.0%
! TTTCATATAGGAATGAAACA+AGG + Chr2:39350362-39350381 None:intergenic 25.0%
!! AGTTTGAGTTCAATTGTTAA+TGG + Chr2:39349550-39349569 None:intergenic 25.0%
!! TTAGAATTTAAGAAAGCACA+TGG + Chr2:39351447-39351466 None:intergenic 25.0%
!!! AAAGATCTTTTTATTTGCAG+AGG - Chr2:39353152-39353171 MsG0280008820.01.T01:intron 25.0%
!!! ACCACATGTTTTGAAAAATT+AGG + Chr2:39352532-39352551 None:intergenic 25.0%
!!! CCACATGTTTTGAAAAATTA+GGG + Chr2:39352531-39352550 None:intergenic 25.0%
!!! GATTTGTTAGTTTATTCATG+AGG - Chr2:39349394-39349413 MsG0280008820.01.T01:intron 25.0%
!!! TATAATTTAGTTCTTCTGCA+TGG - Chr2:39350281-39350300 MsG0280008820.01.T01:intron 25.0%
!!! TTTTTTTTAAACTCGGTATC+CGG + Chr2:39352416-39352435 None:intergenic 25.0%
AACTTACAAGTTAAGACCAA+CGG + Chr2:39349668-39349687 None:intergenic 30.0%
AAGTAGGGGAAATAAGAATA+AGG - Chr2:39350549-39350568 MsG0280008820.01.T01:intron 30.0%
AATTAAGGAACGAGTTAACT+TGG - Chr2:39348339-39348358 MsG0280008820.01.T01:three_prime_UTR 30.0%
ACGAGAATCAATGTTACATA+TGG + Chr2:39353317-39353336 None:intergenic 30.0%
AGAAATGAAAAGGTGAAAAC+TGG - Chr2:39353406-39353425 MsG0280008820.01.T01:intron 30.0%
AGAAGCCATAAAACCAAATT+TGG - Chr2:39353290-39353309 MsG0280008820.01.T01:intron 30.0%
AGACATATTACTTACAGCAT+TGG + Chr2:39351315-39351334 None:intergenic 30.0%
AGTAGGGGAAATAAGAATAA+GGG - Chr2:39350550-39350569 MsG0280008820.01.T01:intron 30.0%
ATATGTGTGAACCTAATACA+AGG - Chr2:39351796-39351815 MsG0280008820.01.T01:intron 30.0%
ATCGGTGTAATTATATGTGT+CGG - Chr2:39349772-39349791 MsG0280008820.01.T01:intron 30.0%
ATGACTGTATTGCACATTAT+AGG + Chr2:39352075-39352094 None:intergenic 30.0%
ATGTCACCTCAACAAATAAA+TGG + Chr2:39350226-39350245 None:intergenic 30.0%
ATGTTGAAGTTCAACCAAAT+CGG - Chr2:39350018-39350037 MsG0280008820.01.T01:intron 30.0%
ATTGTAGTAGAATGGAGAAT+CGG + Chr2:39348088-39348107 None:intergenic 30.0%
CAATAATGAACATCTTCAGA+AGG + Chr2:39352871-39352890 None:intergenic 30.0%
CTCTTAAAACTTAAGATCAG+TGG - Chr2:39348523-39348542 MsG0280008820.01.T01:intron 30.0%
CTTTATAATGCAGTTCAGAA+TGG - Chr2:39350877-39350896 MsG0280008820.01.T01:intron 30.0%
GGAAGAAATACAGAACTTTA+GGG + Chr2:39348999-39349018 None:intergenic 30.0%
GGGAATTGTATTTGATTAAG+AGG + Chr2:39348151-39348170 None:intergenic 30.0%
GGGATTTAGTAAAAAGATGA+GGG + Chr2:39348180-39348199 None:intergenic 30.0%
GGTACAAAAAGAGAGATATA+TGG + Chr2:39350774-39350793 None:intergenic 30.0%
GTATTTGATTAAGAGGATGA+AGG + Chr2:39348144-39348163 None:intergenic 30.0%
GTTTCATTCCTATATGAAAG+AGG - Chr2:39350363-39350382 MsG0280008820.01.T01:intron 30.0%
TAAAAAACTGTATCGAAGGA+GGG + Chr2:39348949-39348968 None:intergenic 30.0%
TAACGTTACACTCTGAATTA+AGG - Chr2:39348324-39348343 MsG0280008820.01.T01:three_prime_UTR 30.0%
TATTTAAGAACTTCACCAAG+TGG + Chr2:39350312-39350331 None:intergenic 30.0%
TCAATCTCTATCATCAAATG+AGG - Chr2:39352212-39352231 MsG0280008820.01.T01:intron 30.0%
TCATATAGGAATGAAACAAG+GGG + Chr2:39350360-39350379 None:intergenic 30.0%
TGATGAAAACCACAATCTTT+GGG - Chr2:39351340-39351359 MsG0280008820.01.T01:intron 30.0%
TGGAAGAAATACAGAACTTT+AGG + Chr2:39349000-39349019 None:intergenic 30.0%
TGGGATTTAGTAAAAAGATG+AGG + Chr2:39348181-39348200 None:intergenic 30.0%
TGTTAACTGATACACAACTA+AGG - Chr2:39348417-39348436 MsG0280008820.01.T01:CDS 30.0%
TGTTACATATGGACCAAATT+TGG + Chr2:39353306-39353325 None:intergenic 30.0%
TTAGGTTCACACATATATTC+TGG + Chr2:39351792-39351811 None:intergenic 30.0%
TTGATGAAAACCACAATCTT+TGG - Chr2:39351339-39351358 MsG0280008820.01.T01:intron 30.0%
! AAAAAGTATACCTCTTCATC+AGG + Chr2:39350426-39350445 None:intergenic 30.0%
! AGAGTCGGTATTTTATAAGT+AGG - Chr2:39350533-39350552 MsG0280008820.01.T01:intron 30.0%
! AGTCGGTATTTTATAAGTAG+GGG - Chr2:39350535-39350554 MsG0280008820.01.T01:intron 30.0%
! AGTTTTCACCTTTTCATTTC+TGG + Chr2:39353407-39353426 None:intergenic 30.0%
! ATATTACTTACAGCATTGGA+GGG + Chr2:39351311-39351330 None:intergenic 30.0%
! ATTAGCATGATAGTTTGTGT+TGG - Chr2:39351494-39351513 MsG0280008820.01.T01:intron 30.0%
! CTTTTGCTTAAAATTGAGAC+CGG + Chr2:39348600-39348619 None:intergenic 30.0%
! GAGTCGGTATTTTATAAGTA+GGG - Chr2:39350534-39350553 MsG0280008820.01.T01:intron 30.0%
! GATTCACAACAAATCCATTT+TGG - Chr2:39350711-39350730 MsG0280008820.01.T01:CDS 30.0%
! TAATGAAATCGTAGCATTGA+CGG + Chr2:39351039-39351058 None:intergenic 30.0%
! TGTGAATCTAGAGCAATAAA+AGG + Chr2:39350699-39350718 None:intergenic 30.0%
! TTCCAGATTTGGCAAATTTT+CGG + Chr2:39350973-39350992 None:intergenic 30.0%
! TTTTCAAAACATGTGGTCAT+GGG - Chr2:39352535-39352554 MsG0280008820.01.T01:intron 30.0%
!! ATAGTTTGTGTTGGTCATTT+TGG - Chr2:39351503-39351522 MsG0280008820.01.T01:intron 30.0%
!! CCCTAATTTTTCAAAACATG+TGG - Chr2:39352528-39352547 MsG0280008820.01.T01:intron 30.0%
!! CGATTTGCTTTTGTAAGAAT+CGG + Chr2:39351630-39351649 None:intergenic 30.0%
!! GGTCAAAAAGTTGATGTATT+TGG + Chr2:39348651-39348670 None:intergenic 30.0%
!! TAGTTTGTGTTGGTCATTTT+GGG - Chr2:39351504-39351523 MsG0280008820.01.T01:intron 30.0%
!! TGATTTGGAATTCTGTTTTG+TGG - Chr2:39353546-39353565 MsG0280008820.01.T01:CDS 30.0%
!! TTTTTCAAAACATGTGGTCA+TGG - Chr2:39352534-39352553 MsG0280008820.01.T01:intron 30.0%
!!! ATGGACCAAATTTGGTTTTA+TGG + Chr2:39353298-39353317 None:intergenic 30.0%
!!! GGTATTTTGGTAGACATAAT+CGG - Chr2:39350508-39350527 MsG0280008820.01.T01:intron 30.0%
AAACTCGCAAACAAAGTCTA+AGG - Chr2:39349055-39349074 MsG0280008820.01.T01:intron 35.0%
AAATCGTACACTAGCAAAGA+CGG - Chr2:39349957-39349976 MsG0280008820.01.T01:intron 35.0%
AACCATGACTTTGTGTAAGT+GGG + Chr2:39352252-39352271 None:intergenic 35.0%
AACTAAGGAACGAGTTAACT+TGG - Chr2:39348432-39348451 MsG0280008820.01.T01:CDS 35.0%
AACTCGCAAACAAAGTCTAA+GGG - Chr2:39349056-39349075 MsG0280008820.01.T01:intron 35.0%
ACTGTGTCTAAACCTTTATC+AGG - Chr2:39350331-39350350 MsG0280008820.01.T01:intron 35.0%
ACTTACAAGTTAAGACCAAC+GGG + Chr2:39349667-39349686 None:intergenic 35.0%
AGAAACATCTGCTCTTACAA+GGG + Chr2:39351219-39351238 None:intergenic 35.0%
AGTTCTGTATTTCTTCCACT+TGG - Chr2:39349002-39349021 MsG0280008820.01.T01:intron 35.0%
ATAACTCACAACAAAAGGCA+AGG + Chr2:39352895-39352914 None:intergenic 35.0%
ATAGAAAGGGAATATCTTGG+AGG - Chr2:39350615-39350634 MsG0280008820.01.T01:CDS 35.0%
ATCAACTGAACCTGATTCAA+AGG + Chr2:39351249-39351268 None:intergenic 35.0%
ATCATAGCATATCTGTCTTG+TGG + Chr2:39353579-39353598 None:intergenic 35.0%
ATCATCTTGAATCGGATTCA+AGG + Chr2:39353130-39353149 None:intergenic 35.0%
ATGACCGATATCATTGTTGT+AGG - Chr2:39351381-39351400 MsG0280008820.01.T01:intron 35.0%
ATTACATTTACCCCACTCTA+AGG - Chr2:39348715-39348734 MsG0280008820.01.T01:intron 35.0%
CAAAGTTATGTATGCACGTT+AGG - Chr2:39352154-39352173 MsG0280008820.01.T01:intron 35.0%
CATGCCTACAACAATGATAT+CGG + Chr2:39351388-39351407 None:intergenic 35.0%
CATTCCTATATGAAAGAGGT+TGG - Chr2:39350367-39350386 MsG0280008820.01.T01:intron 35.0%
CTAAAAAACTGTATCGAAGG+AGG + Chr2:39348950-39348969 None:intergenic 35.0%
CTTAATGACTTTGCAACTTC+AGG - Chr2:39349892-39349911 MsG0280008820.01.T01:intron 35.0%
CTTTAGTTACGACAATGAAG+TGG + Chr2:39351689-39351708 None:intergenic 35.0%
GCACAATGTCATATGATAAG+TGG + Chr2:39351533-39351552 None:intergenic 35.0%
GGACTAAAAAACTGTATCGA+AGG + Chr2:39348953-39348972 None:intergenic 35.0%
GTACATTACAACTACAATGC+TGG + Chr2:39350452-39350471 None:intergenic 35.0%
GTGTGAGTCATTAACCAAAA+TGG + Chr2:39350728-39350747 None:intergenic 35.0%
GTTAAATAAGAAATGGGCCT+AGG - Chr2:39351887-39351906 MsG0280008820.01.T01:intron 35.0%
TAAAGGAGGAAAACAATACG+TGG + Chr2:39351083-39351102 None:intergenic 35.0%
TAACAAATCATTAGCCCCAA+GGG + Chr2:39349383-39349402 None:intergenic 35.0%
TAGAAACATCTGCTCTTACA+AGG + Chr2:39351220-39351239 None:intergenic 35.0%
TAGACATAATCGGTTAGAGT+CGG - Chr2:39350518-39350537 MsG0280008820.01.T01:intron 35.0%
TCAACTGAACCTGATTCAAA+GGG + Chr2:39351248-39351267 None:intergenic 35.0%
TCATAGCATATCTGTCTTGT+GGG + Chr2:39353578-39353597 None:intergenic 35.0%
TCATATGAAAATTCGGGTCA+GGG + Chr2:39352490-39352509 None:intergenic 35.0%
TCATCTTGAATCGGATTCAA+GGG + Chr2:39353129-39353148 None:intergenic 35.0%
TCTGTTCATTTGAGAGTTTG+TGG - Chr2:39350577-39350596 MsG0280008820.01.T01:intron 35.0%
TGAAGTGTAACGAAGAAAAG+TGG + Chr2:39352751-39352770 None:intergenic 35.0%
TTAAGTACGAAGCAGGATAA+AGG - Chr2:39349583-39349602 MsG0280008820.01.T01:intron 35.0%
TTACACTTCATCAACTTCCT+GGG - Chr2:39352761-39352780 MsG0280008820.01.T01:intron 35.0%
TTGTAAGAGCAGATGTTTCT+AGG - Chr2:39351219-39351238 MsG0280008820.01.T01:intron 35.0%
TTGTAGTAGAATGGAGAATC+GGG + Chr2:39348087-39348106 None:intergenic 35.0%
! AAAACTGGAGTGTCTAGTAA+AGG - Chr2:39353421-39353440 MsG0280008820.01.T01:CDS 35.0%
! AAATACAGAACTTTAGGGAG+GGG + Chr2:39348994-39349013 None:intergenic 35.0%
! AGAAATACAGAACTTTAGGG+AGG + Chr2:39348996-39349015 None:intergenic 35.0%
! CATATTACTTACAGCATTGG+AGG + Chr2:39351312-39351331 None:intergenic 35.0%
! GAAATACAGAACTTTAGGGA+GGG + Chr2:39348995-39349014 None:intergenic 35.0%
! GTAATTATATGTGTCGGTGT+CGG - Chr2:39349778-39349797 MsG0280008820.01.T01:intron 35.0%
! TCCAGATTTGGCAAATTTTC+GGG + Chr2:39350972-39350991 None:intergenic 35.0%
! TGAACTCAAACTTTTCCTTC+AGG - Chr2:39349558-39349577 MsG0280008820.01.T01:intron 35.0%
! TTAGACTTTGTTTGCGAGTT+TGG + Chr2:39349056-39349075 None:intergenic 35.0%
!! AGTAAAAAGATGAGGGCATT+TGG + Chr2:39348173-39348192 None:intergenic 35.0%
!! GTAAAAAGATGAGGGCATTT+GGG + Chr2:39348172-39348191 None:intergenic 35.0%
!! GTTGGTCTTAACTTGTAAGT+TGG - Chr2:39349667-39349686 MsG0280008820.01.T01:intron 35.0%
!! TAAAAAGATGAGGGCATTTG+GGG + Chr2:39348171-39348190 None:intergenic 35.0%
AAAACCACAATCTTTGGGTC+GGG - Chr2:39351345-39351364 MsG0280008820.01.T01:intron 40.0%
AAACAAAGAGCCTTAGAGTG+GGG + Chr2:39348728-39348747 None:intergenic 40.0%
AAAGACCTTTGCACTTCATG+TGG - Chr2:39353214-39353233 MsG0280008820.01.T01:intron 40.0%
AACAAATCATTAGCCCCAAG+GGG + Chr2:39349382-39349401 None:intergenic 40.0%
AAGAGTTTACCTCTCTGAAC+AGG + Chr2:39352794-39352813 None:intergenic 40.0%
AAGCGGTCATTGTAGTAGAA+TGG + Chr2:39348096-39348115 None:intergenic 40.0%
AATCAGACATCCTCATGCAA+AGG + Chr2:39351155-39351174 None:intergenic 40.0%
AATCGTACACTAGCAAAGAC+GGG - Chr2:39349958-39349977 MsG0280008820.01.T01:intron 40.0%
ACTTCAGGTCAGCAATATAC+AGG - Chr2:39349907-39349926 MsG0280008820.01.T01:intron 40.0%
AGGCACGAATATTGAACCTT+TGG + Chr2:39348234-39348253 None:intergenic 40.0%
AGGTACAATGTTGACAACTC+AGG + Chr2:39352851-39352870 None:intergenic 40.0%
AGTGTCTAGTAAAGGTTCAC+AGG - Chr2:39353429-39353448 MsG0280008820.01.T01:CDS 40.0%
ATCAGACATCCTCATGCAAA+GGG + Chr2:39351154-39351173 None:intergenic 40.0%
ATGAAGGAAATGAGAAGCAG+CGG + Chr2:39348128-39348147 None:intergenic 40.0%
CAAACAAAGAGCCTTAGAGT+GGG + Chr2:39348729-39348748 None:intergenic 40.0%
CAAATCGGACTGAACTCTTT+AGG - Chr2:39350033-39350052 MsG0280008820.01.T01:intron 40.0%
CAACATGTTGAATGCAAGTC+CGG - Chr2:39349337-39349356 MsG0280008820.01.T01:intron 40.0%
CAACCATGACTTTGTGTAAG+TGG + Chr2:39352253-39352272 None:intergenic 40.0%
CACTTACACAAAGTCATGGT+TGG - Chr2:39352251-39352270 MsG0280008820.01.T01:intron 40.0%
CGTCAAAATTTCAGGCAAAG+TGG - Chr2:39350390-39350409 MsG0280008820.01.T01:CDS 40.0%
CTAAAGAGTTCAGTCCGATT+TGG + Chr2:39350035-39350054 None:intergenic 40.0%
CTAACAAATCATTAGCCCCA+AGG + Chr2:39349384-39349403 None:intergenic 40.0%
CTAAGATGACACCTCATGAA+CGG - Chr2:39353036-39353055 MsG0280008820.01.T01:intron 40.0%
CTCATATGAAAATTCGGGTC+AGG + Chr2:39352491-39352510 None:intergenic 40.0%
GAAAACCACAATCTTTGGGT+CGG - Chr2:39351344-39351363 MsG0280008820.01.T01:intron 40.0%
GCATTTATGACCTCAAGAGA+CGG + Chr2:39353008-39353027 None:intergenic 40.0%
GCTTCGTACTTAAATCCTGA+AGG + Chr2:39349576-39349595 None:intergenic 40.0%
GGAAAAATAGAAGGACCAAG+TGG + Chr2:39349020-39349039 None:intergenic 40.0%
GGCACGAATATTGAACCTTT+GGG + Chr2:39348233-39348252 None:intergenic 40.0%
GTTACACTTCATCAACTTCC+TGG - Chr2:39352760-39352779 MsG0280008820.01.T01:intron 40.0%
TAACCCACCAAAATTGGCAT+CGG + Chr2:39352344-39352363 None:intergenic 40.0%
TAAGACCACATGAAGTGCAA+AGG + Chr2:39353222-39353241 None:intergenic 40.0%
TAATGTTTCCCCTTTGCATG+AGG - Chr2:39351142-39351161 MsG0280008820.01.T01:intron 40.0%
TACCCACTTACACAAAGTCA+TGG - Chr2:39352247-39352266 MsG0280008820.01.T01:intron 40.0%
TAGAGCAATTACTCCAGAGT+AGG + Chr2:39350996-39351015 None:intergenic 40.0%
TAGTTAGTACTCCGTTCATG+AGG + Chr2:39353050-39353069 None:intergenic 40.0%
TAGTTCTCTTAGGGTGTGTT+TGG + Chr2:39349300-39349319 None:intergenic 40.0%
TATGCATGAGCTATGAAGCA+CGG - Chr2:39349695-39349714 MsG0280008820.01.T01:intron 40.0%
TATTTGCAGAGGTCTTCTCT+TGG - Chr2:39353163-39353182 MsG0280008820.01.T01:intron 40.0%
TCAGGATTTAAGTACGAAGC+AGG - Chr2:39349576-39349595 MsG0280008820.01.T01:intron 40.0%
TCCCGAAAATTTGCCAAATC+TGG - Chr2:39350968-39350987 MsG0280008820.01.T01:intron 40.0%
TCTAGTAAAGGTTCACAGGT+TGG - Chr2:39353433-39353452 MsG0280008820.01.T01:CDS 40.0%
TCTTAGTACACGGGTGATTT+CGG + Chr2:39352706-39352725 None:intergenic 40.0%
TGCTTAAAATTGAGACCGGA+GGG + Chr2:39348596-39348615 None:intergenic 40.0%
TGGTATGTACCTCATGTGAT+AGG + Chr2:39350168-39350187 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - Chr2:39349079-39349098 MsG0280008820.01.T01:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + Chr2:39349098-39349079 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + Chr2:39349292-39349311 None:intergenic 40.0%
TTGATAAGAAAAGGTCCCGT+TGG - Chr2:39349649-39349668 MsG0280008820.01.T01:intron 40.0%
TTGCTAGCACTCCTTGTATT+AGG + Chr2:39351810-39351829 None:intergenic 40.0%
TTGCTTAAAATTGAGACCGG+AGG + Chr2:39348597-39348616 None:intergenic 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - Chr2:39349083-39349102 MsG0280008820.01.T01:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + Chr2:39349102-39349083 None:intergenic 40.0%
! AATACAGAACTTTAGGGAGG+GGG + Chr2:39348993-39349012 None:intergenic 40.0%
! ACAAAGTCTAAGGGTGTGTT+TGG - Chr2:39349065-39349084 MsG0280008820.01.T01:intron 40.0%
! ACGGGACCTTTTCTTATCAA+TGG + Chr2:39349649-39349668 None:intergenic 40.0%
! ACTTTGTTTGCGAGTTTGGA+GGG + Chr2:39349052-39349071 None:intergenic 40.0%
! AGAAGTGGTGGAGTATTTGT+TGG - Chr2:39352723-39352742 MsG0280008820.01.T01:intron 40.0%
! CTCTTTGTTTGGGAGTTTGA+AGG - Chr2:39348738-39348757 MsG0280008820.01.T01:intron 40.0%
! GCTTTGGGTGGAAAATATAG+GGG - Chr2:39348770-39348789 MsG0280008820.01.T01:intron 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG - Chr2:39349073-39349092 MsG0280008820.01.T01:intron 40.0%
! TGAATCAGGTTCAGTTGATG+CGG - Chr2:39351250-39351269 MsG0280008820.01.T01:intron 40.0%
!! CACTCTAAGGCTCTTTGTTT+GGG - Chr2:39348728-39348747 MsG0280008820.01.T01:intron 40.0%
!! GAGGGCTTTGGAAAAATAGA+AGG + Chr2:39349029-39349048 None:intergenic 40.0%
!! GGCTTTGGGTGGAAAATATA+GGG - Chr2:39348769-39348788 MsG0280008820.01.T01:intron 40.0%
!! TGAGAAGTACCTATCACATG+AGG - Chr2:39350156-39350175 MsG0280008820.01.T01:intron 40.0%
AAACCACAATCTTTGGGTCG+GGG - Chr2:39351346-39351365 MsG0280008820.01.T01:intron 45.0%
AACAAGGGGACTCCTGATAA+AGG + Chr2:39350346-39350365 None:intergenic 45.0%
AACCCACCAAAATTGGCATC+GGG + Chr2:39352343-39352362 None:intergenic 45.0%
AATGCACTATGAAGCACGGA+CGG + Chr2:39349817-39349836 None:intergenic 45.0%
ACACACCCTAAGAGAACTAG+TGG - Chr2:39349301-39349320 MsG0280008820.01.T01:intron 45.0%
ACATCACACAAAGGAAGCTG+CGG - Chr2:39350748-39350767 MsG0280008820.01.T01:CDS 45.0%
AGCTAGAGGTTTCCTTCCTT+TGG + Chr2:39348562-39348581 None:intergenic 45.0%
AGCTTAGTAAGTACTCCCTC+CGG - Chr2:39348578-39348597 MsG0280008820.01.T01:intron 45.0%
AGGTCAGCAATATACAGGTC+TGG - Chr2:39349912-39349931 MsG0280008820.01.T01:intron 45.0%
ATCACCCGTGTACTAAGAAG+TGG - Chr2:39352708-39352727 MsG0280008820.01.T01:intron 45.0%
ATGGGCCTAGGCTATTTACT+TGG - Chr2:39351899-39351918 MsG0280008820.01.T01:intron 45.0%
CCAAACAAAGAGCCTTAGAG+TGG + Chr2:39348730-39348749 None:intergenic 45.0%
CCCTAATGCACTATGAAGCA+CGG + Chr2:39349821-39349840 None:intergenic 45.0%
CCGTGCTTCATAGTGCATTA+GGG - Chr2:39349818-39349837 MsG0280008820.01.T01:intron 45.0%
CTCCACCACTTCTTAGTACA+CGG + Chr2:39352716-39352735 None:intergenic 45.0%
CTCTATTAGACCAACCCCTT+GGG - Chr2:39349365-39349384 MsG0280008820.01.T01:intron 45.0%
CTTAGGGTGTGTTTGGATTG+AGG + Chr2:39349293-39349312 None:intergenic 45.0%
GACGCCAACCTCTTTCATAT+AGG + Chr2:39350374-39350393 None:intergenic 45.0%
GACTCACACACATCACACAA+AGG - Chr2:39350739-39350758 MsG0280008820.01.T01:CDS 45.0%
GAGGTTGGCGTCAAAATTTC+AGG - Chr2:39350382-39350401 MsG0280008820.01.T01:CDS 45.0%
GAGTACTTTGAGCCTGCTAA+AGG - Chr2:39350905-39350924 MsG0280008820.01.T01:intron 45.0%
GCTTCATAGTGCATTAGGGA+AGG - Chr2:39349822-39349841 MsG0280008820.01.T01:intron 45.0%
GGTCAGGGAAAGAAATTTGG+AGG + Chr2:39352475-39352494 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - Chr2:39349082-39349101 MsG0280008820.01.T01:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + Chr2:39349101-39349082 None:intergenic 45.0%
TACTTTGAGCCTGCTAAAGG+TGG - Chr2:39350908-39350927 MsG0280008820.01.T01:intron 45.0%
TATACCTCTTCATCAGGACC+AGG + Chr2:39350420-39350439 None:intergenic 45.0%
TCAGACATCCTCATGCAAAG+GGG + Chr2:39351153-39351172 None:intergenic 45.0%
TCCACCACTTCTTAGTACAC+GGG + Chr2:39352715-39352734 None:intergenic 45.0%
TCCAGAGTAGGTTCCAGATT+TGG + Chr2:39350984-39351003 None:intergenic 45.0%
TCCGTGCTTCATAGTGCATT+AGG - Chr2:39349817-39349836 MsG0280008820.01.T01:intron 45.0%
TCGGGTCAGGGAAAGAAATT+TGG + Chr2:39352478-39352497 None:intergenic 45.0%
TCTAGGCTTCCCTTTGAATC+AGG - Chr2:39351236-39351255 MsG0280008820.01.T01:intron 45.0%
TCTATTAGACCAACCCCTTG+GGG - Chr2:39349366-39349385 MsG0280008820.01.T01:intron 45.0%
TGACACTCTAGTCCAAAGGA+AGG - Chr2:39348547-39348566 MsG0280008820.01.T01:intron 45.0%
TGAGCTATGAAGCACGGATA+CGG - Chr2:39349701-39349720 MsG0280008820.01.T01:intron 45.0%
TGGATCTGACAGTGACTTCT+GGG - Chr2:39349985-39350004 MsG0280008820.01.T01:intron 45.0%
TGGATGACACTCTAGTCCAA+AGG - Chr2:39348543-39348562 MsG0280008820.01.T01:intron 45.0%
TTCTGCATGGTTCAACCACT+TGG - Chr2:39350294-39350313 MsG0280008820.01.T01:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - Chr2:39349084-39349103 MsG0280008820.01.T01:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + Chr2:39349103-39349084 None:intergenic 45.0%
TTGGTCTAATAGAGCAGGAC+CGG + Chr2:39349359-39349378 None:intergenic 45.0%
! ACTGTATCGAAGGAGGGTTT+TGG + Chr2:39348943-39348962 None:intergenic 45.0%
! ATACAGAACTTTAGGGAGGG+GGG + Chr2:39348992-39349011 None:intergenic 45.0%
! ATACTCCCCGATGCCAATTT+TGG - Chr2:39352334-39352353 MsG0280008820.01.T01:intron 45.0%
! CTAAGGGTGTGTTTGGATTG+AGG - Chr2:39349072-39349091 MsG0280008820.01.T01:intron 45.0%
! CTCCTCCACTAGTTCTCTTA+GGG + Chr2:39349309-39349328 None:intergenic 45.0%
! CTGTATCGAAGGAGGGTTTT+GGG + Chr2:39348942-39348961 None:intergenic 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + Chr2:39349051-39349070 None:intergenic 45.0%
! GACTTTGTTTGCGAGTTTGG+AGG + Chr2:39349053-39349072 None:intergenic 45.0%
! TCTCCTCCACTAGTTCTCTT+AGG + Chr2:39349310-39349329 None:intergenic 45.0%
! TGAACCTTTGGGTTTGAGAG+CGG + Chr2:39348222-39348241 None:intergenic 45.0%
! TGTATCGAAGGAGGGTTTTG+GGG + Chr2:39348941-39348960 None:intergenic 45.0%
!! CCACTCTAAGGCTCTTTGTT+TGG - Chr2:39348727-39348746 MsG0280008820.01.T01:intron 45.0%
!! GAGTATCGAACCTGAGATCT+TGG + Chr2:39352320-39352339 None:intergenic 45.0%
!! GGGAGTACTTACTAAGCTAG+AGG + Chr2:39348576-39348595 None:intergenic 45.0%
!! GGGCTTTGGGTGGAAAATAT+AGG - Chr2:39348768-39348787 MsG0280008820.01.T01:intron 45.0%
!!! AGGGTTTTGGGGGTTTTAGA+TGG + Chr2:39348930-39348949 None:intergenic 45.0%
AATCATTAGCCCCAAGGGGT+TGG + Chr2:39349378-39349397 None:intergenic 50.0%
AATCCAACCGTCCACTTGTG+GGG + Chr2:39352369-39352388 None:intergenic 50.0%
ACAACCAGACCACCTTTAGC+AGG + Chr2:39350920-39350939 None:intergenic 50.0%
ACCCACCAAAATTGGCATCG+GGG + Chr2:39352342-39352361 None:intergenic 50.0%
ACCCGTGTACTAAGAAGTGG+TGG - Chr2:39352711-39352730 MsG0280008820.01.T01:intron 50.0%
AGACTCCACAACAACAGCAG+AGG + Chr2:39348257-39348276 None:intergenic 50.0%
AGCAGTGTCTATGTCGTGTC+CGG + Chr2:39349730-39349749 None:intergenic 50.0%
ATCGAACCTGAGATCTTGGC+AGG + Chr2:39352316-39352335 None:intergenic 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG + Chr2:39349107-39349088 None:intergenic 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG - Chr2:39349088-39349107 MsG0280008820.01.T01:intron 50.0%
CAATCCAACCGTCCACTTGT+GGG + Chr2:39352370-39352389 None:intergenic 50.0%
CACCCTAAGAGAACTAGTGG+AGG - Chr2:39349304-39349323 MsG0280008820.01.T01:intron 50.0%
CACTAGCAAAGACGGGTATC+TGG - Chr2:39349965-39349984 MsG0280008820.01.T01:intron 50.0%
CAGAGGTCTTCTCTTGGCTA+TGG - Chr2:39353169-39353188 MsG0280008820.01.T01:intron 50.0%
CAGTGGGGAAGAAAGAAGCT+TGG - Chr2:39348026-39348045 MsG0280008820.01.T01:three_prime_UTR 50.0%
CAGTGTCTAGTGTCTGAGAG+TGG - Chr2:39352975-39352994 MsG0280008820.01.T01:intron 50.0%
CTGGATCTGACAGTGACTTC+TGG - Chr2:39349984-39350003 MsG0280008820.01.T01:intron 50.0%
CTGGTTGTCGATGTTAGCTG+TGG - Chr2:39350932-39350951 MsG0280008820.01.T01:intron 50.0%
CTTTCCTGGTCCTGATGAAG+AGG - Chr2:39350413-39350432 MsG0280008820.01.T01:CDS 50.0%
GCGGTCCAAGTAAATAGCCT+AGG + Chr2:39351907-39351926 None:intergenic 50.0%
GCTCTATTAGACCAACCCCT+TGG - Chr2:39349364-39349383 MsG0280008820.01.T01:intron 50.0%
GGGGACTAACCCACCAAAAT+TGG + Chr2:39352350-39352369 None:intergenic 50.0%
GTCGATGTTAGCTGTGGAAG+TGG - Chr2:39350938-39350957 MsG0280008820.01.T01:intron 50.0%
GTTTGGGAGTTTGAAGGCGA+AGG - Chr2:39348744-39348763 MsG0280008820.01.T01:intron 50.0%
TAAACTCGGTATCCGGCACA+AGG + Chr2:39352409-39352428 None:intergenic 50.0%
TGGGGAAGAAAGAAGCTTGG+CGG - Chr2:39348029-39348048 MsG0280008820.01.T01:three_prime_UTR 50.0%
TGGTTGAACTCCGTCTCTTG+AGG - Chr2:39352995-39353014 MsG0280008820.01.T01:intron 50.0%
TGTTGTTGTGGAGTCTCCGT+CGG - Chr2:39348261-39348280 MsG0280008820.01.T01:three_prime_UTR 50.0%
TTCAGGCAAAGTGGCTTTCC+TGG - Chr2:39350399-39350418 MsG0280008820.01.T01:CDS 50.0%
TTCTCCGCTCTCAAACCCAA+AGG - Chr2:39348215-39348234 MsG0280008820.01.T01:three_prime_UTR 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG + Chr2:39349276-39349295 None:intergenic 50.0%
! ACACAAAGTCATGGTTGGCC+TGG - Chr2:39352256-39352275 MsG0280008820.01.T01:intron 50.0%
! CTTACAGCATTGGAGGGAGA+TGG + Chr2:39351305-39351324 None:intergenic 50.0%
! GCCAAATCTGGAACCTACTC+TGG - Chr2:39350980-39350999 MsG0280008820.01.T01:intron 50.0%
! TACAGAACTTTAGGGAGGGG+GGG + Chr2:39348991-39349010 None:intergenic 50.0%
! TCAGTTGATGCGGTTCATGC+TGG - Chr2:39351260-39351279 MsG0280008820.01.T01:CDS 50.0%
! TTGGATTGGACCCCTCGAAT+CGG - Chr2:39352382-39352401 MsG0280008820.01.T01:intron 50.0%
! TTTGGGTTTGAGAGCGGAGA+AGG + Chr2:39348216-39348235 None:intergenic 50.0%
!! AAAGTCATGGTTGGCCTGGT+GGG - Chr2:39352260-39352279 MsG0280008820.01.T01:intron 50.0%
!! AGGGGTTGGTCTAATAGAGC+AGG + Chr2:39349364-39349383 None:intergenic 50.0%
!! CTGGTGCTGCTTTGCATTGT+TGG - Chr2:39351279-39351298 MsG0280008820.01.T01:CDS 50.0%
!! GTATCGAAGGAGGGTTTTGG+GGG + Chr2:39348940-39348959 None:intergenic 50.0%
!! TCCCCGATGCCAATTTTGGT+GGG - Chr2:39352338-39352357 MsG0280008820.01.T01:intron 50.0%
AGCAGCGGTAGTAGCAGAAG+CGG + Chr2:39348113-39348132 None:intergenic 55.0%
CCAATCCAACCGTCCACTTG+TGG + Chr2:39352371-39352390 None:intergenic 55.0%
CCACAAGTGGACGGTTGGAT+TGG - Chr2:39352368-39352387 MsG0280008820.01.T01:intron 55.0%
CTCCACAACAACAGCAGAGG+AGG + Chr2:39348254-39348273 None:intergenic 55.0%
GATTGAGGGTTTAGGAGGGG+AGG - Chr2:39349087-39349106 MsG0280008820.01.T01:intron 55.0%
GGCTTGGGATCTTGGAGTGT+GGG - Chr2:39352286-39352305 MsG0280008820.01.T01:intron 55.0%
GGGAGTTTGAAGGCGAAGGA+GGG - Chr2:39348748-39348767 MsG0280008820.01.T01:intron 55.0%
GTACCCCGACCCAAAGATTG+TGG + Chr2:39351352-39351371 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+GGG + Chr2:39349047-39349066 None:intergenic 55.0%
TGAAGCACGGATACGGACAC+CGG - Chr2:39349708-39349727 MsG0280008820.01.T01:intron 55.0%
TGAAGGCGAAGGAGGGCTTT+GGG - Chr2:39348755-39348774 MsG0280008820.01.T01:intron 55.0%
TGAGCCTGCTAAAGGTGGTC+TGG - Chr2:39350913-39350932 MsG0280008820.01.T01:intron 55.0%
TGCCTCCTCTGCTGTTGTTG+TGG - Chr2:39348249-39348268 MsG0280008820.01.T01:three_prime_UTR 55.0%
TGGGAGTTTGAAGGCGAAGG+AGG - Chr2:39348747-39348766 MsG0280008820.01.T01:intron 55.0%
TGTTTGCGAGTTTGGAGGGG+AGG + Chr2:39349048-39349067 None:intergenic 55.0%
TTGAAGGCGAAGGAGGGCTT+TGG - Chr2:39348754-39348773 MsG0280008820.01.T01:intron 55.0%
TTTGAGAGCGGAGAAGGCGA+GGG + Chr2:39348210-39348229 None:intergenic 55.0%
! ACAGAACTTTAGGGAGGGGG+GGG + Chr2:39348990-39349009 None:intergenic 55.0%
! CTCCCCGATGCCAATTTTGG+TGG - Chr2:39352337-39352356 MsG0280008820.01.T01:intron 55.0%
! GGTTAGTCCCCACAAGTGGA+CGG - Chr2:39352359-39352378 MsG0280008820.01.T01:intron 55.0%
! TGGCTTGGGATCTTGGAGTG+TGG - Chr2:39352285-39352304 MsG0280008820.01.T01:intron 55.0%
!! AAGTCATGGTTGGCCTGGTG+GGG - Chr2:39352261-39352280 MsG0280008820.01.T01:intron 55.0%
!! CAAAGTCATGGTTGGCCTGG+TGG - Chr2:39352259-39352278 MsG0280008820.01.T01:intron 55.0%
AGGGTTTAGGAGGGGAAGGG+AGG + Chr2:39349273-39349292 None:intergenic 60.0%
AGTCCCCACAAGTGGACGGT+TGG - Chr2:39352363-39352382 MsG0280008820.01.T01:intron 60.0%
CCTCGAATCGGTCCTTGTGC+CGG - Chr2:39352394-39352413 MsG0280008820.01.T01:intron 60.0%
GAGAAGGCGAGGGCGAAAGT+GGG + Chr2:39348200-39348219 None:intergenic 60.0%
GAGTTTGGAGGGGAGGGCTT+TGG + Chr2:39349041-39349060 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + Chr2:39349272-39349291 None:intergenic 60.0%
GGTGCTCCTGCCAAGATCTC+AGG - Chr2:39352307-39352326 MsG0280008820.01.T01:intron 60.0%
GGTTGCACGCCTGTTCAGAG+AGG - Chr2:39352782-39352801 MsG0280008820.01.T01:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + Chr2:39349271-39349290 None:intergenic 60.0%
GTTTGAGAGCGGAGAAGGCG+AGG + Chr2:39348211-39348230 None:intergenic 60.0%
TCTGAACAGGCGTGCAACCC+AGG + Chr2:39352781-39352800 None:intergenic 60.0%
! AGAACTTTAGGGAGGGGGGG+GGG + Chr2:39348988-39349007 None:intergenic 60.0%
! CAGAACTTTAGGGAGGGGGG+GGG + Chr2:39348989-39349008 None:intergenic 60.0%
!! CGGCACAAGGACCGATTCGA+GGG + Chr2:39352396-39352415 None:intergenic 60.0%
!! GGCACAAGGACCGATTCGAG+GGG + Chr2:39352395-39352414 None:intergenic 60.0%
!! GGTGGGTTAGTCCCCACAAG+TGG - Chr2:39352355-39352374 MsG0280008820.01.T01:intron 60.0%
!! GTGGGGTTGGCTTGGGATCT+TGG - Chr2:39352278-39352297 MsG0280008820.01.T01:intron 60.0%
GAAGCACGGACGGACACGTG+TGG + Chr2:39349807-39349826 None:intergenic 65.0%
GATCCCAAGCCAACCCCACC+AGG + Chr2:39352277-39352296 None:intergenic 65.0%
GGAGAAGGCGAGGGCGAAAG+TGG + Chr2:39348201-39348220 None:intergenic 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + Chr2:39349267-39349286 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + Chr2:39349268-39349287 None:intergenic 65.0%
! AACTTTAGGGAGGGGGGGGG+GGG + Chr2:39348986-39349005 None:intergenic 65.0%
! GAACTTTAGGGAGGGGGGGG+GGG + Chr2:39348987-39349006 None:intergenic 65.0%
!! AGGCGAAGGAGGGCTTTGGG+TGG - Chr2:39348758-39348777 MsG0280008820.01.T01:intron 65.0%
!! CATGGTTGGCCTGGTGGGGT+TGG - Chr2:39352265-39352284 MsG0280008820.01.T01:intron 65.0%
!! CCGGCACAAGGACCGATTCG+AGG + Chr2:39352397-39352416 None:intergenic 65.0%
!! TGGCCTGGTGGGGTTGGCTT+GGG - Chr2:39352271-39352290 MsG0280008820.01.T01:intron 65.0%
!! TTGGCCTGGTGGGGTTGGCT+TGG - Chr2:39352270-39352289 MsG0280008820.01.T01:intron 65.0%
! ACTTTAGGGAGGGGGGGGGG+GGG + Chr2:39348985-39349004 None:intergenic 70.0%
TTTAGGGAGGGGGGGGGGGG+GGG + Chr2:39348983-39349002 None:intergenic 75.0%
! CTTTAGGGAGGGGGGGGGGG+GGG + Chr2:39348984-39349003 None:intergenic 75.0%
! TTAGGGAGGGGGGGGGGGGG+GGG + Chr2:39348982-39349001 None:intergenic 80.0%
! TAGGGAGGGGGGGGGGGGGG+GGG + Chr2:39348981-39349000 None:intergenic 85.0%
! AGGGAGGGGGGGGGGGGGGG+GGG + Chr2:39348980-39348999 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + Chr2:39348976-39348995 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG + Chr2:39348977-39348996 None:intergenic 95.0%
! GGAGGGGGGGGGGGGGGGGG+GGG + Chr2:39348978-39348997 None:intergenic 95.0%
! GGGAGGGGGGGGGGGGGGGG+GGG + Chr2:39348979-39348998 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
Chr2 gene 39348025 39353667 39348025 ID=MsG0280008820.01;Name=MsG0280008820.01
Chr2 mRNA 39348025 39353667 39348025 ID=MsG0280008820.01.T01;Parent=MsG0280008820.01;Name=MsG0280008820.01.T01;_AED=0.37;_eAED=0.37;_QI=81|1|1|1|0.71|0.75|8|367|346
Chr2 exon 39348025 39348520 39348025 ID=MsG0280008820.01.T01:exon:36525;Parent=MsG0280008820.01.T01
Chr2 exon 39348889 39348993 39348889 ID=MsG0280008820.01.T01:exon:36524;Parent=MsG0280008820.01.T01
Chr2 exon 39350373 39350484 39350373 ID=MsG0280008820.01.T01:exon:36523;Parent=MsG0280008820.01.T01
Chr2 exon 39350609 39350802 39350609 ID=MsG0280008820.01.T01:exon:36522;Parent=MsG0280008820.01.T01
Chr2 exon 39351258 39351339 39351258 ID=MsG0280008820.01.T01:exon:36521;Parent=MsG0280008820.01.T01
Chr2 exon 39351638 39351778 39351638 ID=MsG0280008820.01.T01:exon:36520;Parent=MsG0280008820.01.T01
Chr2 exon 39352012 39352112 39352012 ID=MsG0280008820.01.T01:exon:36519;Parent=MsG0280008820.01.T01
Chr2 exon 39353410 39353667 39353410 ID=MsG0280008820.01.T01:exon:36518;Parent=MsG0280008820.01.T01
Chr2 five_prime_UTR 39353587 39353667 39353587 ID=MsG0280008820.01.T01:five_prime_utr;Parent=MsG0280008820.01.T01
Chr2 CDS 39353410 39353586 39353410 ID=MsG0280008820.01.T01:cds;Parent=MsG0280008820.01.T01
Chr2 CDS 39352012 39352112 39352012 ID=MsG0280008820.01.T01:cds;Parent=MsG0280008820.01.T01
Chr2 CDS 39351638 39351778 39351638 ID=MsG0280008820.01.T01:cds;Parent=MsG0280008820.01.T01
Chr2 CDS 39351258 39351339 39351258 ID=MsG0280008820.01.T01:cds;Parent=MsG0280008820.01.T01
Chr2 CDS 39350609 39350802 39350609 ID=MsG0280008820.01.T01:cds;Parent=MsG0280008820.01.T01
Chr2 CDS 39350373 39350484 39350373 ID=MsG0280008820.01.T01:cds;Parent=MsG0280008820.01.T01
Chr2 CDS 39348889 39348993 39348889 ID=MsG0280008820.01.T01:cds;Parent=MsG0280008820.01.T01
Chr2 CDS 39348392 39348520 39348392 ID=MsG0280008820.01.T01:cds;Parent=MsG0280008820.01.T01
Chr2 three_prime_UTR 39348025 39348391 39348025 ID=MsG0280008820.01.T01:three_prime_utr;Parent=MsG0280008820.01.T01
Gene Sequence

>MsG0280008820.01.T01

ATGACCGCTTCTGCTACTACCGCTGCTTCTCATTTCCTTCATCCTCTTAATCAAATACAATTCCCCAAATGCCCTCATCTTTTTACTAAATCCCACTTTCGCCCTCGCCTTCTCCGCTCTCAAACCCAAAGGTTCAATATTCGTGCCTCCTCTGCTGTTGTTGTGGAGTCTCCGTCGGATTTAAGTACGAAGCAGGATAAAGGAACACAAGTTGACTTATTCGCATGCCCTATATGTTATGAACCATTGATAAGAAAAGGTCCCGTTGGTCTTAACTTGTCAGCAATATACAGGTCTGGTTTCAAGTGTAAGAGATGTCAAAAATCGTACACTAGCAAAGACGGGTATCTGGATCTGACAGTGACTTCTGGGTTGAGAGATTATGTTGAAGTTCAACCAAATCGGACTGAACTCTTTAGGAGTCCCCTTGTTTCATTCCTATATGAAAGAGGTTGGCGTCAAAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAGAATGGCTCAAGAGTACTTTGAGCCTGCTAAAGGTGGTCTGGTTGTCGATGTTAGCTGTGGAAGTGGTCTATTTTCCCGAAAATTTGCCAAATCTGGAACCTACTCTGGAGTAATTGCTCTAGATTTTTCTGAAAATATGCTCCGTCAATGCTACGATTTCATTAAGAAAGATGACACACTATCAACCACTAATCTTGCCCTTGTAAGAGCAGATGTTTCTAGGCTTCCCTTTGAATCAGGTTCAGTTGATGCGGTTCATGCTGGTGCTGCTTTGCATTGTTGGCCATCTCCCTCCAATGCTGTTGCCGAAATCACCCGTGTACTAAGAAGTGGTGGAGTATTTGTTGGAACCACTTTTCTTCGTTACACTTCATCAACTTCCTGGGTTGCACGCCTGTTCAGAGAGAGGTCTTCTCTTGGCTATGGCTACTTAACAGAAGAAGAAATTAAAGACCTTTGCACTTCATGTGGTCTTACAAATTACTCATGCAAAATTCAGAAGTCTTTTATTATGTTTACGGCTCAGAAGCCATAA

Protein sequence

>MsG0280008820.01.T01

MTASATTAASHFLHPLNQIQFPKCPHLFTKSHFRPRLLRSQTQRFNIRASSAVVVESPSDLSTKQDKGTQVDLFACPICYEPLIRKGPVGLNLSAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGLVVDVSCGSGLFSRKFAKSGTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAALHCWPSPSNAVAEITRVLRSGGVFVGTTFLRYTSSTSWVARLFRERSSLGYGYLTEEEIKDLCTSCGLTNYSCKIQKSFIMFTAQKP*