AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005791.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005791.01.T01 MTR_1g107165 97.514 523 11 1 1 521 1 523 0.0 1054
MsG0180005791.01.T01 MTR_5g083500 27.955 533 319 18 1 514 7 493 2.31e-51 182
MsG0180005791.01.T01 MTR_3g071950 27.704 527 326 14 2 514 7 492 3.55e-50 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005791.01.T01 AT2G15020 49.536 539 234 12 1 517 1 523 0.0 528
MsG0180005791.01.T01 AT5G64190 25.279 538 336 15 2 516 7 501 7.75e-47 171
MsG0180005791.01.T01 AT5G64190 25.279 538 336 15 2 516 8 502 7.81e-47 171
MsG0180005791.01.T01 AT2G40390 27.652 528 329 18 2 516 8 495 2.00e-40 153

Find 144 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAGGAGTGGGAGGAAATT+AGG 0.150832 1:+96179383 None:intergenic
TCCTTCCCGGGCTCGGGTTT+GGG 0.154770 1:-96178643 MsG0180005791.01.T01:CDS
GTTTGGGTGGGCCCGGAAAT+TGG 0.177853 1:-96178627 MsG0180005791.01.T01:CDS
CTCAAAGCAGAGCGAACTTC+TGG 0.228304 1:-96179518 MsG0180005791.01.T01:CDS
TTCCTTCCCGGGCTCGGGTT+TGG 0.231232 1:-96178644 MsG0180005791.01.T01:CDS
AAGAAAATGGAGAGGGATTC+TGG 0.256277 1:+96179242 None:intergenic
GTTGATTTGCCTCTAATTCA+TGG 0.263186 1:-96178105 MsG0180005791.01.T01:CDS
GTAGGAGTGGGAGGAAATTA+GGG 0.286085 1:+96179384 None:intergenic
ACATAACTAGCTCCAATTTC+CGG 0.286974 1:+96178615 None:intergenic
CACCATACAATATGGATATT+TGG 0.297897 1:-96179649 None:intergenic
GAAATTGAGAAGGTTGTTAA+TGG 0.304105 1:-96178543 MsG0180005791.01.T01:CDS
GAAAACAAGGTTGAAGAAAA+TGG 0.312483 1:+96179229 None:intergenic
ATGGTGCATTATAAGAGAAT+TGG 0.313676 1:-96179009 MsG0180005791.01.T01:CDS
CATTTCTCGGAGATCCAAAT+AGG 0.321681 1:+96179425 None:intergenic
CTCTGTTTCATGCGCACCCT+TGG 0.328639 1:-96179047 MsG0180005791.01.T01:CDS
GCTTCCACGAGCCCACTTCT+TGG 0.331509 1:+96178376 None:intergenic
GTAATAGCAGGGGATGAATA+TGG 0.339074 1:-96178273 MsG0180005791.01.T01:CDS
CATAACTAGCTCCAATTTCC+GGG 0.345763 1:+96178616 None:intergenic
CGTCTCCATGTGGCGAGATT+AGG 0.347974 1:-96178711 MsG0180005791.01.T01:CDS
ACCGACCCGCTCTTACTAAA+TGG 0.353331 1:+96178297 None:intergenic
GTGAGTTGGATATGATTTCT+TGG 0.353682 1:+96179351 None:intergenic
TTATGTGGCAGGCTTGAGTT+TGG 0.357892 1:-96178598 MsG0180005791.01.T01:CDS
GGTTGAAGGGGCGATATGTC+GGG 0.376232 1:-96178329 MsG0180005791.01.T01:CDS
GCCAGTTTCATAGTCATAAC+TGG 0.380966 1:+96178897 None:intergenic
GCCAGTTATGACTATGAAAC+TGG 0.387517 1:-96178898 MsG0180005791.01.T01:CDS
TGAAGAGAGTGTGCATTTCT+CGG 0.388125 1:+96179412 None:intergenic
CGCCCCTTCAACCCATGAAT+CGG 0.388610 1:+96178339 None:intergenic
TTGGGTACATAATAGCAAAA+TGG 0.392593 1:-96179028 MsG0180005791.01.T01:CDS
GGCTCGGGTTTGGGTGGGCC+CGG 0.397924 1:-96178634 MsG0180005791.01.T01:CDS
CTAGCAAGTTCGAACTTCAT+TGG 0.398302 1:+96179575 None:intergenic
TGCGACGCGCCTAGCGAGGC+AGG 0.402409 1:-96179179 MsG0180005791.01.T01:CDS
TGGTGCATTATAAGAGAATT+GGG 0.410752 1:-96179008 MsG0180005791.01.T01:CDS
ATGAAACTGGCGCGAAACTA+CGG 0.423192 1:-96178885 MsG0180005791.01.T01:CDS
ATATGATTTCTTGGAGGAGT+TGG 0.425448 1:+96179360 None:intergenic
GTGTGTTGAAGTGGAGGATA+GGG 0.426343 1:-96178209 MsG0180005791.01.T01:CDS
ATGATCCATGCTATGGGCTC+TGG 0.428592 1:+96179278 None:intergenic
AGTGTGTTGAAGTGGAGGAT+AGG 0.432586 1:-96178210 MsG0180005791.01.T01:CDS
GGCCCACCCAAACCCGAGCC+CGG 0.433858 1:+96178637 None:intergenic
ACGGGTGATGACCCGATTCA+TGG 0.434000 1:-96178351 MsG0180005791.01.T01:CDS
GGGTTGAAGGGGCGATATGT+CGG 0.439602 1:-96178330 MsG0180005791.01.T01:CDS
TATGTGGCAGGCTTGAGTTT+GGG 0.448486 1:-96178597 MsG0180005791.01.T01:CDS
GATGAATATGGAGAAGAAGT+AGG 0.452069 1:-96178261 MsG0180005791.01.T01:CDS
CTTGAGTTTGGGTCGGTCTA+CGG 0.453754 1:-96178586 MsG0180005791.01.T01:CDS
CTCATTCCACTCTACTGAGC+TGG 0.458461 1:+96179607 None:intergenic
GGAGGAGTTGGAGTAGGAGT+GGG 0.460854 1:+96179372 None:intergenic
GACAACGCAGTTTCGAGAAC+CGG 0.463504 1:+96179128 None:intergenic
TCTGTTTCATGCGCACCCTT+GGG 0.465524 1:-96179046 MsG0180005791.01.T01:CDS
TACCTGCCTGACCAAGCAAA+AGG 0.472557 1:-96178168 MsG0180005791.01.T01:CDS
TGGAGGAGTTGGAGTAGGAG+TGG 0.474177 1:+96179371 None:intergenic
TCCCGGGCTCGGGTTTGGGT+GGG 0.474749 1:-96178639 MsG0180005791.01.T01:CDS
TGAAACTGGCGCGAAACTAC+GGG 0.475994 1:-96178884 MsG0180005791.01.T01:CDS
AGCGGGTCGGTTGTAATAGC+AGG 0.479382 1:-96178285 MsG0180005791.01.T01:CDS
ACCTTCATGGTATTCTTACA+AGG 0.479621 1:-96179473 MsG0180005791.01.T01:CDS
ATGCTAAGGAGTCAATAATC+AGG 0.479874 1:-96178836 MsG0180005791.01.T01:CDS
CGGTCTAGCTCACCACCAAT+TGG 0.481424 1:-96178811 MsG0180005791.01.T01:CDS
TCCGTGGCGTAAGAGAATTT+CGG 0.482234 1:+96178954 None:intergenic
CGAGTCTATGATCCATGCTA+TGG 0.484977 1:+96179271 None:intergenic
CGCTTGCGACGCGCCTAGCG+AGG 0.486831 1:-96179183 MsG0180005791.01.T01:CDS
GAGAACAAAGAGTTGGAGAA+TGG 0.487193 1:-96178460 MsG0180005791.01.T01:CDS
TTCCCGGGCTCGGGTTTGGG+TGG 0.488666 1:-96178640 MsG0180005791.01.T01:CDS
GCCCCTTCAACCCATGAATC+GGG 0.488783 1:+96178340 None:intergenic
TTTCTTGGAGGAGTTGGAGT+AGG 0.492223 1:+96179366 None:intergenic
TGTGTTGAAGTGGAGGATAG+GGG 0.494047 1:-96178208 MsG0180005791.01.T01:CDS
GACCCGATTCATGGGTTGAA+GGG 0.496070 1:-96178342 MsG0180005791.01.T01:CDS
TCAAAGCAGAGCGAACTTCT+GGG 0.497368 1:-96179517 MsG0180005791.01.T01:CDS
AAGCTTCAGCGAAGTCTTCG+AGG 0.497840 1:-96178488 MsG0180005791.01.T01:CDS
GTGGAGGTTAAGTAAAGAGA+TGG 0.497916 1:-96178238 MsG0180005791.01.T01:CDS
TTTCCACTCGTTACTTGCTC+CGG 0.502153 1:-96179147 MsG0180005791.01.T01:CDS
ACCCAAACCCGAGCCCGGGA+AGG 0.505885 1:+96178642 None:intergenic
ATTTCAAGGTATTGATGCTA+AGG 0.506261 1:-96178850 MsG0180005791.01.T01:CDS
ATGAATATGGAGAAGAAGTA+GGG 0.506264 1:-96178260 MsG0180005791.01.T01:CDS
GGGCAAAACGGTAAATTTCA+AGG 0.509959 1:-96178864 MsG0180005791.01.T01:CDS
ACTGCACGTGTGCTTCCAAT+TGG 0.511898 1:+96178796 None:intergenic
TGGAAGGGAGTGTGTTGAAG+TGG 0.512738 1:-96178218 MsG0180005791.01.T01:CDS
AGAAGCACTAGTAACCTTCA+TGG 0.513303 1:-96179486 MsG0180005791.01.T01:CDS
ATTATAAGAGAATTGGGTGT+AGG 0.514599 1:-96179002 MsG0180005791.01.T01:CDS
GCCCACCCAAACCCGAGCCC+GGG 0.519196 1:+96178638 None:intergenic
GGAGAATGAGAACAAAGAGT+TGG 0.522842 1:-96178467 MsG0180005791.01.T01:CDS
AGTGGGCTCGTGGAAGCCTA+CGG 0.523175 1:-96178370 MsG0180005791.01.T01:CDS
CGGGCCAAGAAGTGGGCTCG+TGG 0.526068 1:-96178380 MsG0180005791.01.T01:CDS
CGAGAAATCAGATATTTCAA+AGG 0.531598 1:-96178514 MsG0180005791.01.T01:CDS
GGTTAAGTAAAGAGATGGAA+GGG 0.532562 1:-96178233 MsG0180005791.01.T01:CDS
ATTGGAGCTAGTTATGTGGC+AGG 0.533692 1:-96178609 MsG0180005791.01.T01:CDS
AAGTTCGAACTTGCTAGAGA+TGG 0.535314 1:-96179569 MsG0180005791.01.T01:CDS
TCATTCCACTCTACTGAGCT+GGG 0.537296 1:+96179608 None:intergenic
GTGGGCTCGTGGAAGCCTAC+GGG 0.538592 1:-96178369 MsG0180005791.01.T01:CDS
CGGGTGATGACCCGATTCAT+GGG 0.539719 1:-96178350 MsG0180005791.01.T01:CDS
GGAGTTGGAGTAGGAGTGGG+AGG 0.540122 1:+96179375 None:intergenic
ATGGAGAAGAAGTAGGGTGG+AGG 0.540386 1:-96178254 MsG0180005791.01.T01:CDS
GTGTTGAAGTGGAGGATAGG+GGG 0.541041 1:-96178207 MsG0180005791.01.T01:CDS
GCGCGAAACTACGGGCAAAA+CGG 0.542584 1:-96178876 MsG0180005791.01.T01:CDS
TAGAGTGAACCTGCCTCGCT+AGG 0.545326 1:+96179170 None:intergenic
ATTGGAAGCACACGTGCAGT+TGG 0.551697 1:-96178793 MsG0180005791.01.T01:CDS
TAATATGACGGGCCAAGAAG+TGG 0.553598 1:-96178388 MsG0180005791.01.T01:CDS
ATCGTGTGCTGTGGGTGAGT+TGG 0.557028 1:+96179337 None:intergenic
AATATGGAGAAGAAGTAGGG+TGG 0.557252 1:-96178257 MsG0180005791.01.T01:CDS
TGGCAGGCTTGAGTTTGGGT+CGG 0.560008 1:-96178593 MsG0180005791.01.T01:CDS
ACCTGCCTGACCAAGCAAAA+GGG 0.564399 1:-96178167 MsG0180005791.01.T01:CDS
GGAGAATAATGAAAGAGAAG+TGG 0.566557 1:-96178565 MsG0180005791.01.T01:CDS
ATAGACCATTTAGTAAGAGC+GGG 0.569119 1:-96178302 MsG0180005791.01.T01:CDS
AACTCCCCAGCTCAGTAGAG+TGG 0.570068 1:-96179613 MsG0180005791.01.T01:CDS
TAAGAGAATTTCGGATTCGA+AGG 0.571957 1:+96178963 None:intergenic
GTGCAGTTGGAATATACAGT+TGG 0.573238 1:-96178780 MsG0180005791.01.T01:CDS
AGTTGGATATGATTTCTTGG+AGG 0.577043 1:+96179354 None:intergenic
TGACCCGATTCATGGGTTGA+AGG 0.577299 1:-96178343 MsG0180005791.01.T01:CDS
AGGTTAAGTAAAGAGATGGA+AGG 0.577773 1:-96178234 MsG0180005791.01.T01:CDS
ACAATATGGATATTTGGTCA+TGG 0.577891 1:-96179643 None:intergenic
AAGAGAAGTGGAAATTGAGA+AGG 0.580891 1:-96178553 MsG0180005791.01.T01:CDS
GCACGTGTGCTTCCAATTGG+TGG 0.586502 1:+96178799 None:intergenic
TCTTACGCCACGGAGTCTCA+AGG 0.587357 1:-96178945 MsG0180005791.01.T01:CDS
ACCCGATTCATGGGTTGAAG+GGG 0.587692 1:-96178341 MsG0180005791.01.T01:CDS
GAGTCTATGATCCATGCTAT+GGG 0.587822 1:+96179272 None:intergenic
AATATGACGGGCCAAGAAGT+GGG 0.587989 1:-96178387 MsG0180005791.01.T01:CDS
GCGGGTCGGTTGTAATAGCA+GGG 0.593458 1:-96178284 MsG0180005791.01.T01:CDS
GCAAGTGCTATCGTGTGCTG+TGG 0.594345 1:+96179328 None:intergenic
TACACCTACGGTGATAAAGA+AGG 0.594492 1:+96179079 None:intergenic
GAGTTCAGTGTCTACACCTA+CGG 0.594648 1:+96179067 None:intergenic
GAATGGATCAAGACGCGGAG+GGG 0.597718 1:-96178443 MsG0180005791.01.T01:CDS
AAGGTTGAAGAAAATGGAGA+GGG 0.609805 1:+96179235 None:intergenic
TCAAACCAGAGCCCATAGCA+TGG 0.613481 1:-96179283 MsG0180005791.01.T01:CDS
GTTGAAGGGGCGATATGTCG+GGG 0.613691 1:-96178328 MsG0180005791.01.T01:CDS
AAGGAGTCAATAATCAGGTA+CGG 0.618007 1:-96178831 MsG0180005791.01.T01:CDS
AGAACCTTCTTTATCACCGT+AGG 0.624589 1:-96179083 MsG0180005791.01.T01:CDS
CAAGGTTGAAGAAAATGGAG+AGG 0.624633 1:+96179234 None:intergenic
TCCGAAATTCTCTTACGCCA+CGG 0.629660 1:-96178955 MsG0180005791.01.T01:CDS
GCCTTGTAAGAATACCATGA+AGG 0.630625 1:+96179472 None:intergenic
AATAGACCATTTAGTAAGAG+CGG 0.634830 1:-96178303 MsG0180005791.01.T01:CDS
GTTGTCGAAGAAACTAGCTT+CGG 0.635873 1:-96179111 MsG0180005791.01.T01:CDS
AAGGGAGTGTGTTGAAGTGG+AGG 0.645267 1:-96178215 MsG0180005791.01.T01:CDS
ACCATTTAGTAAGAGCGGGT+CGG 0.645800 1:-96178298 MsG0180005791.01.T01:CDS
GGAAATTGGAGCTAGTTATG+TGG 0.646603 1:-96178613 MsG0180005791.01.T01:CDS
TAAAACCTAATCTCGCCACA+TGG 0.646686 1:+96178706 None:intergenic
GAACCGGAGCAAGTAACGAG+TGG 0.649394 1:+96179144 None:intergenic
GAGAATGGATCAAGACGCGG+AGG 0.650927 1:-96178445 MsG0180005791.01.T01:CDS
AGAGACGAATGGTGAAAACA+AGG 0.653167 1:+96179216 None:intergenic
CAAGTGCTATCGTGTGCTGT+GGG 0.657065 1:+96179329 None:intergenic
GCATAGCCAAAAGAGACGAA+TGG 0.660735 1:+96179205 None:intergenic
AGAATGGATCAAGACGCGGA+GGG 0.664709 1:-96178444 MsG0180005791.01.T01:CDS
CATTCCACTCTACTGAGCTG+GGG 0.683835 1:+96179609 None:intergenic
TTGAAACTAGATGTATTGAG+TGG 0.685420 1:-96178137 MsG0180005791.01.T01:CDS
CGGGTCGGTTGTAATAGCAG+GGG 0.688298 1:-96178283 MsG0180005791.01.T01:CDS
TGAATCGGGTCATCACCCGT+AGG 0.692591 1:+96178354 None:intergenic
TGATAATATACGTCTCCATG+TGG 0.695983 1:-96178721 MsG0180005791.01.T01:CDS
TTGGAGAATGGATCAAGACG+CGG 0.707631 1:-96178448 MsG0180005791.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAATTTTCCATGAATTAG+AGG + Chr1:96179630-96179649 None:intergenic 25.0%
!! TATACAGTTGGATTTTATGA+TGG - Chr1:96178955-96178974 MsG0180005791.01.T01:CDS 25.0%
!! TGTTTTGCATGATAATATGA+CGG - Chr1:96179323-96179342 MsG0180005791.01.T01:CDS 25.0%
!!! ATTTTATGATGGATTCATTC+AGG - Chr1:96178966-96178985 MsG0180005791.01.T01:CDS 25.0%
AATAGACCATTTAGTAAGAG+CGG - Chr1:96179420-96179439 MsG0180005791.01.T01:CDS 30.0%
ATGAATATGGAGAAGAAGTA+GGG - Chr1:96179463-96179482 MsG0180005791.01.T01:CDS 30.0%
ATGGTGCATTATAAGAGAAT+TGG - Chr1:96178714-96178733 MsG0180005791.01.T01:CDS 30.0%
ATTATAAGAGAATTGGGTGT+AGG - Chr1:96178721-96178740 MsG0180005791.01.T01:CDS 30.0%
CGAGAAATCAGATATTTCAA+AGG - Chr1:96179209-96179228 MsG0180005791.01.T01:CDS 30.0%
GAAAACAAGGTTGAAGAAAA+TGG + Chr1:96178497-96178516 None:intergenic 30.0%
GAAATTGAGAAGGTTGTTAA+TGG - Chr1:96179180-96179199 MsG0180005791.01.T01:CDS 30.0%
TGGTGCATTATAAGAGAATT+GGG - Chr1:96178715-96178734 MsG0180005791.01.T01:CDS 30.0%
TTGAAACTAGATGTATTGAG+TGG - Chr1:96179586-96179605 MsG0180005791.01.T01:CDS 30.0%
TTGGGTACATAATAGCAAAA+TGG - Chr1:96178695-96178714 MsG0180005791.01.T01:CDS 30.0%
! GTTTTGCATGATAATATGAC+GGG - Chr1:96179324-96179343 MsG0180005791.01.T01:CDS 30.0%
!! ATTTCAAGGTATTGATGCTA+AGG - Chr1:96178873-96178892 MsG0180005791.01.T01:CDS 30.0%
!! TTTTAAACATGGTGATGATG+TGG - Chr1:96179035-96179054 MsG0180005791.01.T01:CDS 30.0%
!!! ATTTTGCTATTATGTACCCA+AGG + Chr1:96178696-96178715 None:intergenic 30.0%
!!! TTTTGCTATTATGTACCCAA+GGG + Chr1:96178695-96178714 None:intergenic 30.0%
AAGAGAAGTGGAAATTGAGA+AGG - Chr1:96179170-96179189 MsG0180005791.01.T01:CDS 35.0%
AAGGAGTCAATAATCAGGTA+CGG - Chr1:96178892-96178911 MsG0180005791.01.T01:CDS 35.0%
AAGGTTGAAGAAAATGGAGA+GGG + Chr1:96178491-96178510 None:intergenic 35.0%
ACATAACTAGCTCCAATTTC+CGG + Chr1:96179111-96179130 None:intergenic 35.0%
ACCTTCATGGTATTCTTACA+AGG - Chr1:96178250-96178269 MsG0180005791.01.T01:CDS 35.0%
AGGTTAAGTAAAGAGATGGA+AGG - Chr1:96179489-96179508 MsG0180005791.01.T01:CDS 35.0%
AGTTGGATATGATTTCTTGG+AGG + Chr1:96178372-96178391 None:intergenic 35.0%
ATAGACCATTTAGTAAGAGC+GGG - Chr1:96179421-96179440 MsG0180005791.01.T01:CDS 35.0%
ATATGATTTCTTGGAGGAGT+TGG + Chr1:96178366-96178385 None:intergenic 35.0%
ATGCTAAGGAGTCAATAATC+AGG - Chr1:96178887-96178906 MsG0180005791.01.T01:CDS 35.0%
GATGAATATGGAGAAGAAGT+AGG - Chr1:96179462-96179481 MsG0180005791.01.T01:CDS 35.0%
GGAGAATAATGAAAGAGAAG+TGG - Chr1:96179158-96179177 MsG0180005791.01.T01:CDS 35.0%
GGTTAAGTAAAGAGATGGAA+GGG - Chr1:96179490-96179509 MsG0180005791.01.T01:CDS 35.0%
TAAGAGAATTTCGGATTCGA+AGG + Chr1:96178763-96178782 None:intergenic 35.0%
TCAACACCCAAAAACCTATT+TGG - Chr1:96178284-96178303 MsG0180005791.01.T01:CDS 35.0%
TGATAATATACGTCTCCATG+TGG - Chr1:96179002-96179021 MsG0180005791.01.T01:CDS 35.0%
! GGAGATCCAAATAGGTTTTT+GGG + Chr1:96178293-96178312 None:intergenic 35.0%
! GTGAGTTGGATATGATTTCT+TGG + Chr1:96178375-96178394 None:intergenic 35.0%
! TTTTCACCATTCGTCTCTTT+TGG - Chr1:96178512-96178531 MsG0180005791.01.T01:CDS 35.0%
!! CAAGGTTTTTGGATTCTGAA+AGG - Chr1:96178796-96178815 MsG0180005791.01.T01:CDS 35.0%
!! GTTGATTTGCCTCTAATTCA+TGG - Chr1:96179618-96179637 MsG0180005791.01.T01:CDS 35.0%
!!! ATAGGTTTTTGGGTGTTGAA+TGG + Chr1:96178283-96178302 None:intergenic 35.0%
!!! GCGAGATTAGGTTTTAAACA+TGG - Chr1:96179024-96179043 MsG0180005791.01.T01:CDS 35.0%
!!! TGGTTTGAGTTTTTGAAGCT+GGG + Chr1:96178428-96178447 None:intergenic 35.0%
AAGAAAATGGAGAGGGATTC+TGG + Chr1:96178484-96178503 None:intergenic 40.0%
AATATGGAGAAGAAGTAGGG+TGG - Chr1:96179466-96179485 MsG0180005791.01.T01:CDS 40.0%
AGAACCTTCTTTATCACCGT+AGG - Chr1:96178640-96178659 MsG0180005791.01.T01:CDS 40.0%
AGAGACGAATGGTGAAAACA+AGG + Chr1:96178510-96178529 None:intergenic 40.0%
CAAGGTTGAAGAAAATGGAG+AGG + Chr1:96178492-96178511 None:intergenic 40.0%
CATAACTAGCTCCAATTTCC+GGG + Chr1:96179110-96179129 None:intergenic 40.0%
CATTTCTCGGAGATCCAAAT+AGG + Chr1:96178301-96178320 None:intergenic 40.0%
CTAGCAAGTTCGAACTTCAT+TGG + Chr1:96178151-96178170 None:intergenic 40.0%
GAGAACAAAGAGTTGGAGAA+TGG - Chr1:96179263-96179282 MsG0180005791.01.T01:CDS 40.0%
GAGTCTATGATCCATGCTAT+GGG + Chr1:96178454-96178473 None:intergenic 40.0%
GCCAGTTATGACTATGAAAC+TGG - Chr1:96178825-96178844 MsG0180005791.01.T01:CDS 40.0%
GCCAGTTTCATAGTCATAAC+TGG + Chr1:96178829-96178848 None:intergenic 40.0%
GCCTTGTAAGAATACCATGA+AGG + Chr1:96178254-96178273 None:intergenic 40.0%
GGAAATTGGAGCTAGTTATG+TGG - Chr1:96179110-96179129 MsG0180005791.01.T01:CDS 40.0%
GGAGAATGAGAACAAAGAGT+TGG - Chr1:96179256-96179275 MsG0180005791.01.T01:CDS 40.0%
GGGCAAAACGGTAAATTTCA+AGG - Chr1:96178859-96178878 MsG0180005791.01.T01:CDS 40.0%
GTAATAGCAGGGGATGAATA+TGG - Chr1:96179450-96179469 MsG0180005791.01.T01:CDS 40.0%
GTGCAGTTGGAATATACAGT+TGG - Chr1:96178943-96178962 MsG0180005791.01.T01:CDS 40.0%
GTGGAGGTTAAGTAAAGAGA+TGG - Chr1:96179485-96179504 MsG0180005791.01.T01:CDS 40.0%
TAAAACCTAATCTCGCCACA+TGG + Chr1:96179020-96179039 None:intergenic 40.0%
TACACCTACGGTGATAAAGA+AGG + Chr1:96178647-96178666 None:intergenic 40.0%
! ACGAGAAACATTTTCCTTCC+CGG - Chr1:96179067-96179086 MsG0180005791.01.T01:CDS 40.0%
! CAAAATGACTCCCTTTTGCT+TGG + Chr1:96179569-96179588 None:intergenic 40.0%
! CGGAGATCCAAATAGGTTTT+TGG + Chr1:96178294-96178313 None:intergenic 40.0%
! GTTGTCGAAGAAACTAGCTT+CGG - Chr1:96178612-96178631 MsG0180005791.01.T01:CDS 40.0%
! TGAAGAGAGTGTGCATTTCT+CGG + Chr1:96178314-96178333 None:intergenic 40.0%
!! AAGTTCGAACTTGCTAGAGA+TGG - Chr1:96178154-96178173 MsG0180005791.01.T01:CDS 40.0%
!! AGAAGCACTAGTAACCTTCA+TGG - Chr1:96178237-96178256 MsG0180005791.01.T01:CDS 40.0%
!!! AGTTTTTGAAGCTGGGATCT+AGG + Chr1:96178421-96178440 None:intergenic 40.0%
!!! CTGGTTTGAGTTTTTGAAGC+TGG + Chr1:96178429-96178448 None:intergenic 40.0%
!!! GTTTTTGAAGCTGGGATCTA+GGG + Chr1:96178420-96178439 None:intergenic 40.0%
ACCATTTAGTAAGAGCGGGT+CGG - Chr1:96179425-96179444 MsG0180005791.01.T01:CDS 45.0%
AGTAGGAGTGGGAGGAAATT+AGG + Chr1:96178343-96178362 None:intergenic 45.0%
AGTGTGTTGAAGTGGAGGAT+AGG - Chr1:96179513-96179532 MsG0180005791.01.T01:CDS 45.0%
ATGAAACTGGCGCGAAACTA+CGG - Chr1:96178838-96178857 MsG0180005791.01.T01:CDS 45.0%
ATTGGAGCTAGTTATGTGGC+AGG - Chr1:96179114-96179133 MsG0180005791.01.T01:CDS 45.0%
CGAGTCTATGATCCATGCTA+TGG + Chr1:96178455-96178474 None:intergenic 45.0%
GAGTTCAGTGTCTACACCTA+CGG + Chr1:96178659-96178678 None:intergenic 45.0%
GCATAGCCAAAAGAGACGAA+TGG + Chr1:96178521-96178540 None:intergenic 45.0%
GTAGGAGTGGGAGGAAATTA+GGG + Chr1:96178342-96178361 None:intergenic 45.0%
GTGTGTTGAAGTGGAGGATA+GGG - Chr1:96179514-96179533 MsG0180005791.01.T01:CDS 45.0%
TATGTGGCAGGCTTGAGTTT+GGG - Chr1:96179126-96179145 MsG0180005791.01.T01:CDS 45.0%
TCAAAGCAGAGCGAACTTCT+GGG - Chr1:96178206-96178225 MsG0180005791.01.T01:CDS 45.0%
TCATTCCACTCTACTGAGCT+GGG + Chr1:96178118-96178137 None:intergenic 45.0%
TCCGAAATTCTCTTACGCCA+CGG - Chr1:96178768-96178787 MsG0180005791.01.T01:CDS 45.0%
TCCGTGGCGTAAGAGAATTT+CGG + Chr1:96178772-96178791 None:intergenic 45.0%
TGTGTTGAAGTGGAGGATAG+GGG - Chr1:96179515-96179534 MsG0180005791.01.T01:CDS 45.0%
TTATGTGGCAGGCTTGAGTT+TGG - Chr1:96179125-96179144 MsG0180005791.01.T01:CDS 45.0%
TTGGAGAATGGATCAAGACG+CGG - Chr1:96179275-96179294 MsG0180005791.01.T01:CDS 45.0%
TTTCCACTCGTTACTTGCTC+CGG - Chr1:96178576-96178595 MsG0180005791.01.T01:CDS 45.0%
TTTCTTGGAGGAGTTGGAGT+AGG + Chr1:96178360-96178379 None:intergenic 45.0%
! CGAGAAACATTTTCCTTCCC+GGG - Chr1:96179068-96179087 MsG0180005791.01.T01:CDS 45.0%
! GAGGATAGGGGGAGAATTTT+GGG - Chr1:96179527-96179546 MsG0180005791.01.T01:CDS 45.0%
!! AATATGACGGGCCAAGAAGT+GGG - Chr1:96179336-96179355 MsG0180005791.01.T01:CDS 45.0%
!! TAATATGACGGGCCAAGAAG+TGG - Chr1:96179335-96179354 MsG0180005791.01.T01:CDS 45.0%
AAGCTTCAGCGAAGTCTTCG+AGG - Chr1:96179235-96179254 MsG0180005791.01.T01:CDS 50.0%
ACCGACCCGCTCTTACTAAA+TGG + Chr1:96179429-96179448 None:intergenic 50.0%
ACCTGCCTGACCAAGCAAAA+GGG - Chr1:96179556-96179575 MsG0180005791.01.T01:CDS 50.0%
ACTGCACGTGTGCTTCCAAT+TGG + Chr1:96178930-96178949 None:intergenic 50.0%
AGAATGGATCAAGACGCGGA+GGG - Chr1:96179279-96179298 MsG0180005791.01.T01:CDS 50.0%
ATGATCCATGCTATGGGCTC+TGG + Chr1:96178448-96178467 None:intergenic 50.0%
ATGGAGAAGAAGTAGGGTGG+AGG - Chr1:96179469-96179488 MsG0180005791.01.T01:CDS 50.0%
CAAGTGCTATCGTGTGCTGT+GGG + Chr1:96178397-96178416 None:intergenic 50.0%
CATTCCACTCTACTGAGCTG+GGG + Chr1:96178117-96178136 None:intergenic 50.0%
CCAAAAACCTTGAGACTCCG+TGG + Chr1:96178788-96178807 None:intergenic 50.0%
CTCAAAGCAGAGCGAACTTC+TGG - Chr1:96178205-96178224 MsG0180005791.01.T01:CDS 50.0%
CTCATTCCACTCTACTGAGC+TGG + Chr1:96178119-96178138 None:intergenic 50.0%
CTTGAGTTTGGGTCGGTCTA+CGG - Chr1:96179137-96179156 MsG0180005791.01.T01:CDS 50.0%
GACAACGCAGTTTCGAGAAC+CGG + Chr1:96178598-96178617 None:intergenic 50.0%
GTGTTGAAGTGGAGGATAGG+GGG - Chr1:96179516-96179535 MsG0180005791.01.T01:CDS 50.0%
TACCTGCCTGACCAAGCAAA+AGG - Chr1:96179555-96179574 MsG0180005791.01.T01:CDS 50.0%
TCAAACCAGAGCCCATAGCA+TGG - Chr1:96178440-96178459 MsG0180005791.01.T01:CDS 50.0%
TCTGTTTCATGCGCACCCTT+GGG - Chr1:96178677-96178696 MsG0180005791.01.T01:CDS 50.0%
TGAAACTGGCGCGAAACTAC+GGG - Chr1:96178839-96178858 MsG0180005791.01.T01:CDS 50.0%
! AACATTTTCCTTCCCGGGCT+CGG - Chr1:96179073-96179092 MsG0180005791.01.T01:CDS 50.0%
! AAGGGAGTGTGTTGAAGTGG+AGG - Chr1:96179508-96179527 MsG0180005791.01.T01:CDS 50.0%
! ACCCGATTCATGGGTTGAAG+GGG - Chr1:96179382-96179401 MsG0180005791.01.T01:CDS 50.0%
! ATTGGAAGCACACGTGCAGT+TGG - Chr1:96178930-96178949 MsG0180005791.01.T01:CDS 50.0%
! CCACGGAGTCTCAAGGTTTT+TGG - Chr1:96178785-96178804 MsG0180005791.01.T01:CDS 50.0%
! GACCCGATTCATGGGTTGAA+GGG - Chr1:96179381-96179400 MsG0180005791.01.T01:CDS 50.0%
! GGAGGATAGGGGGAGAATTT+TGG - Chr1:96179526-96179545 MsG0180005791.01.T01:CDS 50.0%
! TGACCCGATTCATGGGTTGA+AGG - Chr1:96179380-96179399 MsG0180005791.01.T01:CDS 50.0%
! TGACTCCCTTTTGCTTGGTC+AGG + Chr1:96179564-96179583 None:intergenic 50.0%
! TGGAAGGGAGTGTGTTGAAG+TGG - Chr1:96179505-96179524 MsG0180005791.01.T01:CDS 50.0%
AACTCCCCAGCTCAGTAGAG+TGG - Chr1:96178110-96178129 MsG0180005791.01.T01:CDS 55.0%
ACGGGTGATGACCCGATTCA+TGG - Chr1:96179372-96179391 MsG0180005791.01.T01:CDS 55.0%
AGCGGGTCGGTTGTAATAGC+AGG - Chr1:96179438-96179457 MsG0180005791.01.T01:CDS 55.0%
ATCGTGTGCTGTGGGTGAGT+TGG + Chr1:96178389-96178408 None:intergenic 55.0%
CGCCCCTTCAACCCATGAAT+CGG + Chr1:96179387-96179406 None:intergenic 55.0%
CGGGTCGGTTGTAATAGCAG+GGG - Chr1:96179440-96179459 MsG0180005791.01.T01:CDS 55.0%
CGGGTGATGACCCGATTCAT+GGG - Chr1:96179373-96179392 MsG0180005791.01.T01:CDS 55.0%
CGTCTCCATGTGGCGAGATT+AGG - Chr1:96179012-96179031 MsG0180005791.01.T01:CDS 55.0%
CTCTGTTTCATGCGCACCCT+TGG - Chr1:96178676-96178695 MsG0180005791.01.T01:CDS 55.0%
GAACCGGAGCAAGTAACGAG+TGG + Chr1:96178582-96178601 None:intergenic 55.0%
GAATGGATCAAGACGCGGAG+GGG - Chr1:96179280-96179299 MsG0180005791.01.T01:CDS 55.0%
GAGAATGGATCAAGACGCGG+AGG - Chr1:96179278-96179297 MsG0180005791.01.T01:CDS 55.0%
GCAAGTGCTATCGTGTGCTG+TGG + Chr1:96178398-96178417 None:intergenic 55.0%
GCACGTGTGCTTCCAATTGG+TGG + Chr1:96178927-96178946 None:intergenic 55.0%
GCCCCTTCAACCCATGAATC+GGG + Chr1:96179386-96179405 None:intergenic 55.0%
GCGCGAAACTACGGGCAAAA+CGG - Chr1:96178847-96178866 MsG0180005791.01.T01:CDS 55.0%
GCGGGTCGGTTGTAATAGCA+GGG - Chr1:96179439-96179458 MsG0180005791.01.T01:CDS 55.0%
GGAGGAGTTGGAGTAGGAGT+GGG + Chr1:96178354-96178373 None:intergenic 55.0%
GGGTTGAAGGGGCGATATGT+CGG - Chr1:96179393-96179412 MsG0180005791.01.T01:CDS 55.0%
GGTTGAAGGGGCGATATGTC+GGG - Chr1:96179394-96179413 MsG0180005791.01.T01:CDS 55.0%
GTTGAAGGGGCGATATGTCG+GGG - Chr1:96179395-96179414 MsG0180005791.01.T01:CDS 55.0%
TAGAGTGAACCTGCCTCGCT+AGG + Chr1:96178556-96178575 None:intergenic 55.0%
TCTTACGCCACGGAGTCTCA+AGG - Chr1:96178778-96178797 MsG0180005791.01.T01:CDS 55.0%
TGAATCGGGTCATCACCCGT+AGG + Chr1:96179372-96179391 None:intergenic 55.0%
TGGAGGAGTTGGAGTAGGAG+TGG + Chr1:96178355-96178374 None:intergenic 55.0%
TGGCAGGCTTGAGTTTGGGT+CGG - Chr1:96179130-96179149 MsG0180005791.01.T01:CDS 55.0%
! ACATTTTCCTTCCCGGGCTC+GGG - Chr1:96179074-96179093 MsG0180005791.01.T01:CDS 55.0%
! CGGTCTAGCTCACCACCAAT+TGG - Chr1:96178912-96178931 MsG0180005791.01.T01:CDS 55.0%
! TCCCTTTTGCTTGGTCAGGC+AGG + Chr1:96179560-96179579 None:intergenic 55.0%
GCTTCCACGAGCCCACTTCT+TGG + Chr1:96179350-96179369 None:intergenic 60.0%
GGAGTTGGAGTAGGAGTGGG+AGG + Chr1:96178351-96178370 None:intergenic 60.0%
GTTTGGGTGGGCCCGGAAAT+TGG - Chr1:96179096-96179115 MsG0180005791.01.T01:CDS 60.0%
! AGTGGGCTCGTGGAAGCCTA+CGG - Chr1:96179353-96179372 MsG0180005791.01.T01:CDS 60.0%
GTGGGCTCGTGGAAGCCTAC+GGG - Chr1:96179354-96179373 MsG0180005791.01.T01:CDS 65.0%
TCCTTCCCGGGCTCGGGTTT+GGG - Chr1:96179080-96179099 MsG0180005791.01.T01:CDS 65.0%
TTCCTTCCCGGGCTCGGGTT+TGG - Chr1:96179079-96179098 MsG0180005791.01.T01:CDS 65.0%
ACCCAAACCCGAGCCCGGGA+AGG + Chr1:96179084-96179103 None:intergenic 70.0%
TCCCGGGCTCGGGTTTGGGT+GGG - Chr1:96179084-96179103 MsG0180005791.01.T01:CDS 70.0%
TTCCCGGGCTCGGGTTTGGG+TGG - Chr1:96179083-96179102 MsG0180005791.01.T01:CDS 70.0%
! CGGGCCAAGAAGTGGGCTCG+TGG - Chr1:96179343-96179362 MsG0180005791.01.T01:CDS 70.0%
CGCTTGCGACGCGCCTAGCG+AGG - Chr1:96178540-96178559 MsG0180005791.01.T01:CDS 75.0%
GCCCACCCAAACCCGAGCCC+GGG + Chr1:96179088-96179107 None:intergenic 75.0%
GGCCCACCCAAACCCGAGCC+CGG + Chr1:96179089-96179108 None:intergenic 75.0%
GGCTCGGGTTTGGGTGGGCC+CGG - Chr1:96179089-96179108 MsG0180005791.01.T01:CDS 75.0%
TGCGACGCGCCTAGCGAGGC+AGG - Chr1:96178544-96178563 MsG0180005791.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 96178085 96179660 96178085 ID=MsG0180005791.01;Name=MsG0180005791.01
Chr1 mRNA 96178085 96179660 96178085 ID=MsG0180005791.01.T01;Parent=MsG0180005791.01;Name=MsG0180005791.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|7|522
Chr1 exon 96178085 96179660 96178085 ID=MsG0180005791.01.T01:exon:19462;Parent=MsG0180005791.01.T01
Chr1 CDS 96178092 96179660 96178092 ID=MsG0180005791.01.T01:cds;Parent=MsG0180005791.01.T01
Chr1 three_prime_UTR 96178085 96178091 96178085 ID=MsG0180005791.01.T01:three_prime_utr;Parent=MsG0180005791.01.T01
Gene Sequence

>MsG0180005791.01.T01

ATGGATATTTGGTCATGGATATCTGAACTCCCCAGCTCAGTAGAGTGGAATGAGTCTGACTCACCAATGAAGTTCGAACTTGCTAGAGATGGAAAGAACGATTCAACTCGTTCTATTTATCTCAAAGCAGAGCGAACTTCTGGGTCAGACTCAGAAGCACTAGTAACCTTCATGGTATTCTTACAAGGCTTCTATCCATTCAACACCCAAAAACCTATTTGGATCTCCGAGAAATGCACACTCTCTTCAGAAAACCCTAATTTCCTCCCACTCCTACTCCAACTCCTCCAAGAAATCATATCCAACTCACCCACAGCACACGATAGCACTTGCCCTAGATCCCAGCTTCAAAAACTCAAACCAGAGCCCATAGCATGGATCATAGACTCGCACACACCAGAATCCCTCTCCATTTTCTTCAACCTTGTTTTCACCATTCGTCTCTTTTGGCTATGCGCTTGCGACGCGCCTAGCGAGGCAGGTTCACTCTATTTCCACTCGTTACTTGCTCCGGTTCTCGAAACTGCGTTGTCGAAGAAACTAGCTTCGGTGCTAAGAACCTTCTTTATCACCGTAGGTGTAGACACTGAACTCTGTTTCATGCGCACCCTTGGGTACATAATAGCAAAATGGTGCATTATAAGAGAATTGGGTGTAGGATTGCAAACACTCGTGCCTTCGAATCCGAAATTCTCTTACGCCACGGAGTCTCAAGGTTTTTGGATTCTGAAAGGCTACGCGCCAGTTATGACTATGAAACTGGCGCGAAACTACGGGCAAAACGGTAAATTTCAAGGTATTGATGCTAAGGAGTCAATAATCAGGTACGGTCTAGCTCACCACCAATTGGAAGCACACGTGCAGTTGGAATATACAGTTGGATTTTATGATGGATTCATTCAGGTTAATACACGTGTTGATAATATACGTCTCCATGTGGCGAGATTAGGTTTTAAACATGGTGATGATGTGGATTTTGTTGACGAGAAACATTTTCCTTCCCGGGCTCGGGTTTGGGTGGGCCCGGAAATTGGAGCTAGTTATGTGGCAGGCTTGAGTTTGGGTCGGTCTACGGAGAATAATGAAAGAGAAGTGGAAATTGAGAAGGTTGTTAATGGTAATTTCGAGAAATCAGATATTTCAAAGGTGAAAGCTTCAGCGAAGTCTTCGAGGAGAATGAGAACAAAGAGTTGGAGAATGGATCAAGACGCGGAGGGGAATGCAGCTATATTTGATGTTGTTTTGCATGATAATATGACGGGCCAAGAAGTGGGCTCGTGGAAGCCTACGGGTGATGACCCGATTCATGGGTTGAAGGGGCGATATGTCGGGGCAAATAGACCATTTAGTAAGAGCGGGTCGGTTGTAATAGCAGGGGATGAATATGGAGAAGAAGTAGGGTGGAGGTTAAGTAAAGAGATGGAAGGGAGTGTGTTGAAGTGGAGGATAGGGGGAGAATTTTGGGTTAGTTACCTGCCTGACCAAGCAAAAGGGAGTCATTTTGAAACTAGATGTATTGAGTGGTGTGATGAAGTTGATTTGCCTCTAATTCATGGAAAATTACTCTGA

Protein sequence

>MsG0180005791.01.T01

MDIWSWISELPSSVEWNESDSPMKFELARDGKNDSTRSIYLKAERTSGSDSEALVTFMVFLQGFYPFNTQKPIWISEKCTLSSENPNFLPLLLQLLQEIISNSPTAHDSTCPRSQLQKLKPEPIAWIIDSHTPESLSIFFNLVFTIRLFWLCACDAPSEAGSLYFHSLLAPVLETALSKKLASVLRTFFITVGVDTELCFMRTLGYIIAKWCIIRELGVGLQTLVPSNPKFSYATESQGFWILKGYAPVMTMKLARNYGQNGKFQGIDAKESIIRYGLAHHQLEAHVQLEYTVGFYDGFIQVNTRVDNIRLHVARLGFKHGDDVDFVDEKHFPSRARVWVGPEIGASYVAGLSLGRSTENNEREVEIEKVVNGNFEKSDISKVKASAKSSRRMRTKSWRMDQDAEGNAAIFDVVLHDNMTGQEVGSWKPTGDDPIHGLKGRYVGANRPFSKSGSVVIAGDEYGEEVGWRLSKEMEGSVLKWRIGGEFWVSYLPDQAKGSHFETRCIEWCDEVDLPLIHGKLL*