AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009008.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009008.01.T01 MTR_2g450530 94.161 274 12 1 1 274 1 270 0.0 538
MsG0280009008.01.T01 MTR_2g450530 97.222 180 5 0 95 274 26 205 3.37e-129 368
MsG0280009008.01.T01 MTR_3g074250 51.852 243 105 3 36 274 31 265 7.93e-82 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009008.01.T01 AT2G41040 62.724 279 98 3 1 273 1 279 2.86e-121 350
MsG0280009008.01.T01 AT1G78140 56.019 216 93 2 61 274 63 278 7.05e-81 248

Find 76 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTGCTGCTTTGCATTGC+TGG 0.079979 2:+43374005 MsG0280009008.01.T01:CDS
CTGGATCTGACAGTGACTTC+TGG 0.199104 2:+43372579 MsG0280009008.01.T01:CDS
TCCCGAAAATTTGCCAAATC+TGG 0.210877 2:+43373693 MsG0280009008.01.T01:CDS
TTGTAAGAGCAGATGTTTCT+AGG 0.235494 2:+43373945 MsG0280009008.01.T01:CDS
GAGGTTGGCGTCAAAATTTC+AGG 0.262886 2:+43372938 MsG0280009008.01.T01:CDS
TTCAGGCAAAGTGGCTTTCC+TGG 0.278494 2:+43372955 MsG0280009008.01.T01:CDS
TCTAGGCTTCCCTTTGAATC+AGG 0.297752 2:+43373962 MsG0280009008.01.T01:CDS
TCCAGAGTAGGTTCCAGATT+TGG 0.320022 2:-43373706 None:intergenic
CACTAGCAAAGACGGGTATC+TGG 0.354927 2:+43372560 MsG0280009008.01.T01:CDS
TGGCACGAATATTGAACCTT+TGG 0.362042 2:-43371310 None:intergenic
TCAATGGTTCATAACATATA+GGG 0.366384 2:-43372359 None:intergenic
GGGAATTGTATTTGATTAAG+AGG 0.373335 2:-43371227 None:intergenic
ATCAATGGTTCATAACATAT+AGG 0.384751 2:-43372360 None:intergenic
TGGATCTGACAGTGACTTCT+GGG 0.394949 2:+43372580 MsG0280009008.01.T01:CDS
GGCACGAATATTGAACCTTT+GGG 0.407444 2:-43371309 None:intergenic
GACGCCAACCTCTTTCATAT+AGG 0.414654 2:-43372927 None:intergenic
GAAAGTGGGATTTAGTAAAA+AGG 0.418898 2:-43371262 None:intergenic
TTTAAGTACGAAGCAGGATC+AGG 0.428934 2:+43372311 MsG0280009008.01.T01:CDS
ATTGTAGTAGAACGGAGAAT+CGG 0.471212 2:-43371164 None:intergenic
TAGAAACATCTGCTCTTACA+AGG 0.471408 2:-43373943 None:intergenic
TTGTAGTAGAACGGAGAATC+GGG 0.473657 2:-43371163 None:intergenic
GCCAAATCTGGAACCTACTC+TGG 0.475484 2:+43373705 MsG0280009008.01.T01:CDS
ATGTTGAAGTTCAACCAAAT+CGG 0.478110 2:+43372613 MsG0280009008.01.T01:CDS
TGCCACCTCTGCTGTTGTTG+TGG 0.483280 2:+43371328 MsG0280009008.01.T01:CDS
TATGAACCATTGATAAGAAA+AGG 0.483602 2:+43372369 MsG0280009008.01.T01:CDS
GTTTCATTCCTATATGAAAG+AGG 0.483857 2:+43372919 MsG0280009008.01.T01:CDS
AGGTCAGCAATATACAGGTC+TGG 0.485814 2:+43372507 MsG0280009008.01.T01:intron
ACTTACAAGTTAAGACCAAC+AGG 0.489542 2:-43372393 None:intergenic
TAATGAAATCGTAGCATTGA+CGG 0.490015 2:-43373761 None:intergenic
AGACATATTACTTACAGCAT+TGG 0.490607 2:-43374038 None:intergenic
ATCAACTGAACCTGATTCAA+AGG 0.490665 2:-43373972 None:intergenic
CTTTATAATGCAGTTCAGAA+TGG 0.495463 2:+43373602 MsG0280009008.01.T01:intron
GGAGAAGGCGAGGGCGAAAG+TGG 0.497259 2:-43371277 None:intergenic
ACTTCAGGTCAGCAATATAC+AGG 0.502396 2:+43372502 MsG0280009008.01.T01:intron
CATTCCTATATGAAAGAGGT+TGG 0.503405 2:+43372923 MsG0280009008.01.T01:CDS
CATATTACTTACAGCATTGG+AGG 0.505667 2:-43374035 None:intergenic
TCAGGATTTAAGTACGAAGC+AGG 0.508485 2:+43372305 MsG0280009008.01.T01:intron
GTATTTGATTAAGAGGATGA+AGG 0.509877 2:-43371220 None:intergenic
TTTGGGTTTGAGAGCGGAGA+AGG 0.511189 2:-43371292 None:intergenic
AGCAGCGGTAGTAGCAGAAG+CGG 0.524135 2:-43371189 None:intergenic
AAATCATACACTAGCAAAGA+CGG 0.529071 2:+43372552 MsG0280009008.01.T01:CDS
TTGATAAGAAAAGGTCCTGT+TGG 0.536732 2:+43372378 MsG0280009008.01.T01:CDS
GATTCTCCGTTCTACTACAA+TGG 0.538298 2:+43371166 MsG0280009008.01.T01:exon
GAGTACTTTGAGCCTGCTAA+AGG 0.538931 2:+43373630 MsG0280009008.01.T01:CDS
TCAGTTGATGCAGTTCATGC+TGG 0.542271 2:+43373986 MsG0280009008.01.T01:CDS
GTCGATGTTAGCTGTGGAAG+TGG 0.544771 2:+43373663 MsG0280009008.01.T01:CDS
GGCTGAAAATGGGACACAGT+GGG 0.546515 2:+43371089 None:intergenic
ACAATCAAACCACCTTTAGC+AGG 0.546708 2:-43373642 None:intergenic
CTTTCCTGGTCCTGATGAAG+AGG 0.548244 2:+43372969 MsG0280009008.01.T01:CDS
CGTCAAAATTTCAGGCAAAG+TGG 0.551579 2:+43372946 MsG0280009008.01.T01:CDS
CTCCACAACAACAGCAGAGG+TGG 0.553323 2:-43371330 None:intergenic
TCAACTGAACCTGATTCAAA+GGG 0.555624 2:-43373971 None:intergenic
CTTACAGCATTGGAGGGAGA+TGG 0.562732 2:-43374028 None:intergenic
GTTTGAGAGCGGAGAAGGCG+AGG 0.563644 2:-43371287 None:intergenic
TACTTTGAGCCTGCTAAAGG+TGG 0.574809 2:+43373633 MsG0280009008.01.T01:CDS
TGGGGAAGAAAGAAGCTTGG+CGG 0.585272 2:+43371108 MsG0280009008.01.T01:five_prime_UTR
TTTGAGAGCGGAGAAGGCGA+GGG 0.588926 2:-43371286 None:intergenic
TTCATATAGGAATGAAACAA+GGG 0.589684 2:-43372914 None:intergenic
CATACCTCTTCATCAGGACC+AGG 0.591548 2:-43372973 None:intergenic
AATCATACACTAGCAAAGAC+GGG 0.594152 2:+43372553 MsG0280009008.01.T01:CDS
TGAACCTTTGGGTTTGAGAG+CGG 0.595270 2:-43371298 None:intergenic
GAGAAGGCGAGGGCGAAAGT+GGG 0.600598 2:-43371276 None:intergenic
TAGAGCAATTACTCCAGAGT+AGG 0.603186 2:-43373718 None:intergenic
ATGAAGGAAATGAGAAGCAG+CGG 0.603500 2:-43371204 None:intergenic
TGTTGTTGTGGAGTCTCCGT+CGG 0.604285 2:+43371340 MsG0280009008.01.T01:CDS
AGAAACATCTGCTCTTACAA+GGG 0.617587 2:-43373942 None:intergenic
TTCTCCGCTCTCAAACCCAA+AGG 0.617708 2:+43371294 MsG0280009008.01.T01:CDS
TTAAGTACGAAGCAGGATCA+GGG 0.620722 2:+43372312 MsG0280009008.01.T01:CDS
AAGCGGCCATTGTAGTAGAA+CGG 0.620959 2:-43371172 None:intergenic
TTTCATATAGGAATGAAACA+AGG 0.621014 2:-43372915 None:intergenic
ATATTACTTACAGCATTGGA+GGG 0.629930 2:-43374034 None:intergenic
CAGTGGGGAAGAAAGAAGCT+TGG 0.637931 2:+43371105 MsG0280009008.01.T01:five_prime_UTR
TTGATTGTCGATGTTAGCTG+TGG 0.638033 2:+43373657 MsG0280009008.01.T01:CDS
GCTGAAAATGGGACACAGTG+GGG 0.668207 2:+43371090 None:intergenic
TCATATAGGAATGAAACAAG+GGG 0.670366 2:-43372913 None:intergenic
AGACTCCACAACAACAGCAG+AGG 0.682823 2:-43371333 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTATATTTTTTTTTTTTTG+TGG + Chr2:43371424-43371443 MsG0280009008.01.T01:intron 10.0%
!! ACAATAAATAAATGGAAAAA+TGG - Chr2:43372796-43372815 None:intergenic 15.0%
!! ATGTTTGAACAATAAATAAA+TGG - Chr2:43372804-43372823 None:intergenic 15.0%
!! TAAATTCAAAAATCAAGTAA+AGG - Chr2:43373825-43373844 None:intergenic 15.0%
!! TACAAATATTATTCAAGTAT+GGG - Chr2:43373030-43373049 None:intergenic 15.0%
!!! ACAAAAAAACTTTTATTGAA+CGG - Chr2:43373302-43373321 None:intergenic 15.0%
!!! ATATTTTTTTTTTTTTGTGG+TGG + Chr2:43371427-43371446 MsG0280009008.01.T01:intron 15.0%
!!! ATTTGTAGTTATTGTTTTAA+AGG + Chr2:43373043-43373062 MsG0280009008.01.T01:intron 15.0%
!!! GGTTTTTTTTTTTTTATGAA+TGG + Chr2:43373132-43373151 MsG0280009008.01.T01:intron 15.0%
!! AAAATTATAGTTTATACCGA+CGG - Chr2:43371359-43371378 None:intergenic 20.0%
!! AAACTAAATTTAAACCACTT+AGG - Chr2:43371618-43371637 None:intergenic 20.0%
!! AAGCAAAAACTGATAAAAAA+AGG - Chr2:43371973-43371992 None:intergenic 20.0%
!! ATACAAAATAGATTGTTACA+TGG + Chr2:43372656-43372675 MsG0280009008.01.T01:intron 20.0%
!! CAACTAAATTTAAACCATTT+AGG - Chr2:43371642-43371661 None:intergenic 20.0%
!! CTACAAATATTATTCAAGTA+TGG - Chr2:43373031-43373050 None:intergenic 20.0%
!! TGAGTTCTATTGTTAATTAA+GGG - Chr2:43372275-43372294 None:intergenic 20.0%
!! TGTTAACTGTTACATAATTA+AGG + Chr2:43371567-43371586 MsG0280009008.01.T01:intron 20.0%
!! TGTTATTAATTAAGCTCAAA+AGG - Chr2:43373430-43373449 None:intergenic 20.0%
!! TTATATAATCCGAACTTTAT+AGG + Chr2:43371876-43371895 MsG0280009008.01.T01:intron 20.0%
!! TTGAGTTCTATTGTTAATTA+AGG - Chr2:43372276-43372295 None:intergenic 20.0%
!! TTTGAAAGAATTCAAGATAT+TGG + Chr2:43372192-43372211 MsG0280009008.01.T01:intron 20.0%
!!! CAAAAAAACTTTTATTGAAC+GGG - Chr2:43373301-43373320 None:intergenic 20.0%
!!! CTGATTTTAGAATTTGAATA+GGG - Chr2:43371804-43371823 None:intergenic 20.0%
!!! CTTGATTTTTGAATTTATTG+CGG + Chr2:43373828-43373847 MsG0280009008.01.T01:intron 20.0%
!!! TAAAAAAAGGTTGATGTATT+TGG - Chr2:43371960-43371979 None:intergenic 20.0%
!!! TCATTTTCTCTATTTAAACT+TGG + Chr2:43371378-43371397 MsG0280009008.01.T01:intron 20.0%
!!! TCTGATTTTAGAATTTGAAT+AGG - Chr2:43371805-43371824 None:intergenic 20.0%
!!! TTAAATTTAGTTTGCCTAAA+TGG + Chr2:43371625-43371644 MsG0280009008.01.T01:intron 20.0%
!!! TTATTGTTTTAAAGGTGTTT+TGG + Chr2:43373051-43373070 MsG0280009008.01.T01:intron 20.0%
!!! TTTTTTTTTTATGAATGGCA+AGG + Chr2:43373137-43373156 MsG0280009008.01.T01:intron 20.0%
! AAGATATTCCCTTTCTATAA+AGG - Chr2:43373258-43373277 None:intergenic 25.0%
! AATGGATATTGTACAAATAC+TGG - Chr2:43372778-43372797 None:intergenic 25.0%
! ACAATCCATAATATATGCAA+AGG - Chr2:43371471-43371490 None:intergenic 25.0%
! ACATTAAATTCATAATTCGC+TGG - Chr2:43373854-43373873 None:intergenic 25.0%
! ATCAATGGTTCATAACATAT+AGG - Chr2:43372363-43372382 None:intergenic 25.0%
! ATCGTTTCTCTTAAAACTTA+AGG + Chr2:43371681-43371700 MsG0280009008.01.T01:intron 25.0%
! ATGACTAATCCTTTATAGAA+AGG + Chr2:43373246-43373265 MsG0280009008.01.T01:intron 25.0%
! ATTCAAAAATCAAGTAAAGG+AGG - Chr2:43373822-43373841 None:intergenic 25.0%
! TATGAACCATTGATAAGAAA+AGG + Chr2:43372369-43372388 MsG0280009008.01.T01:CDS 25.0%
! TCAATGGTTCATAACATATA+GGG - Chr2:43372362-43372381 None:intergenic 25.0%
! TCTATATTTAGTCCAAAATC+CGG + Chr2:43371933-43371952 MsG0280009008.01.T01:intron 25.0%
! TGACTAATCCTTTATAGAAA+GGG + Chr2:43373247-43373266 MsG0280009008.01.T01:intron 25.0%
! TTCATATAGGAATGAAACAA+GGG - Chr2:43372917-43372936 None:intergenic 25.0%
! TTTATAGAAAGGGAATATCT+TGG + Chr2:43373257-43373276 MsG0280009008.01.T01:intron 25.0%
! TTTCATATAGGAATGAAACA+AGG - Chr2:43372918-43372937 None:intergenic 25.0%
!! ATATCGGTTAGAAGAATATA+GGG + Chr2:43373079-43373098 MsG0280009008.01.T01:intron 25.0%
!!! AGAAATGTTTTAACGTGTTT+TGG + Chr2:43371822-43371841 MsG0280009008.01.T01:intron 25.0%
!!! ATTTAGTTTGTAAGTAGTTC+CGG - Chr2:43372006-43372025 None:intergenic 25.0%
!!! GATTTGTTAGTTTATTCATG+AGG + Chr2:43372127-43372146 MsG0280009008.01.T01:intron 25.0%
!!! TATAATTTAGTTCTTCTGCA+TGG + Chr2:43372837-43372856 MsG0280009008.01.T01:intron 25.0%
AAATCATACACTAGCAAAGA+CGG + Chr2:43372552-43372571 MsG0280009008.01.T01:CDS 30.0%
AATTAAGGAACGAGTTAACT+TGG + Chr2:43371582-43371601 MsG0280009008.01.T01:intron 30.0%
ACTGTGTCTAAACATTTATC+AGG + Chr2:43372887-43372906 MsG0280009008.01.T01:intron 30.0%
AGACATATTACTTACAGCAT+TGG - Chr2:43374041-43374060 None:intergenic 30.0%
ATGTTGAAGTTCAACCAAAT+CGG + Chr2:43372613-43372632 MsG0280009008.01.T01:CDS 30.0%
CATCGTGAGCTTAATTTAAT+TGG - Chr2:43371498-43371517 None:intergenic 30.0%
CCCCTACTTATACAAAATAT+CGG - Chr2:43373180-43373199 None:intergenic 30.0%
CTTTATAATGCAGTTCAGAA+TGG + Chr2:43373602-43373621 MsG0280009008.01.T01:intron 30.0%
GAAAGTGGGATTTAGTAAAA+AGG - Chr2:43371265-43371284 None:intergenic 30.0%
GGGAATTGTATTTGATTAAG+AGG - Chr2:43371230-43371249 None:intergenic 30.0%
GGTACAAAAAGAGAGATATA+TGG - Chr2:43373409-43373428 None:intergenic 30.0%
GTATTTGATTAAGAGGATGA+AGG - Chr2:43371223-43371242 None:intergenic 30.0%
GTGAGCTTAATTTAATTGGT+AGG - Chr2:43371494-43371513 None:intergenic 30.0%
GTGTGAGTTATTAACCAAAA+TGG - Chr2:43373363-43373382 None:intergenic 30.0%
GTTTCATTCCTATATGAAAG+AGG + Chr2:43372919-43372938 MsG0280009008.01.T01:CDS 30.0%
TAGGGGAAATAAGAATAGAA+GGG + Chr2:43373194-43373213 MsG0280009008.01.T01:intron 30.0%
TATTTAAGAACTTCACCAAG+TGG - Chr2:43372868-43372887 None:intergenic 30.0%
TCATATAGGAATGAAACAAG+GGG - Chr2:43372916-43372935 None:intergenic 30.0%
TTCGGATTATATAATCCGAA+TGG - Chr2:43371889-43371870 None:intergenic 30.0%
! AGCCGATATTTTGTATAAGT+AGG + Chr2:43373175-43373194 MsG0280009008.01.T01:intron 30.0%
! ATATTACTTACAGCATTGGA+GGG - Chr2:43374037-43374056 None:intergenic 30.0%
! CATATCGGTTAGAAGAATAT+AGG + Chr2:43373078-43373097 MsG0280009008.01.T01:intron 30.0%
! CCGATATTTTGTATAAGTAG+GGG + Chr2:43373177-43373196 MsG0280009008.01.T01:intron 30.0%
! CTTAATGATTTTGCAACTTC+AGG + Chr2:43372487-43372506 MsG0280009008.01.T01:intron 30.0%
! GATTCACAACAAATCCATTT+TGG + Chr2:43373346-43373365 MsG0280009008.01.T01:intron 30.0%
! GCCGATATTTTGTATAAGTA+GGG + Chr2:43373176-43373195 MsG0280009008.01.T01:intron 30.0%
! TAATGAAATCGTAGCATTGA+CGG - Chr2:43373764-43373783 None:intergenic 30.0%
! TGTGAATCTAGAGCAATAAA+AGG - Chr2:43373334-43373353 None:intergenic 30.0%
! TTCCAGATTTGGCAAATTTT+CGG - Chr2:43373698-43373717 None:intergenic 30.0%
! TTTTTGCTTATGTGTTAGAC+CGG + Chr2:43371984-43372003 MsG0280009008.01.T01:intron 30.0%
!!! AATGTTTTAACGTGTTTTGG+AGG + Chr2:43371825-43371844 MsG0280009008.01.T01:intron 30.0%
!!! GTGTTTTGGAGGTTTTTATA+GGG + Chr2:43371836-43371855 MsG0280009008.01.T01:intron 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+CGG + Chr2:43371431-43371450 MsG0280009008.01.T01:intron 30.0%
AATCAGATATCCTCATGCAA+AGG - Chr2:43373881-43373900 None:intergenic 35.0%
AATCATACACTAGCAAAGAC+GGG + Chr2:43372553-43372572 MsG0280009008.01.T01:CDS 35.0%
ACTTACAAGTTAAGACCAAC+AGG - Chr2:43372396-43372415 None:intergenic 35.0%
AGAAACATCTGCTCTTACAA+GGG - Chr2:43373945-43373964 None:intergenic 35.0%
AGGGGAAATAAGAATAGAAG+GGG + Chr2:43373195-43373214 MsG0280009008.01.T01:intron 35.0%
ATCAACTGAACCTGATTCAA+AGG - Chr2:43373975-43373994 None:intergenic 35.0%
ATCAGATATCCTCATGCAAA+GGG - Chr2:43373880-43373899 None:intergenic 35.0%
ATTGTAGTAGAACGGAGAAT+CGG - Chr2:43371167-43371186 None:intergenic 35.0%
CATAATATATGCAAAGGTCC+AGG - Chr2:43371465-43371484 None:intergenic 35.0%
CATTCCTATATGAAAGAGGT+TGG + Chr2:43372923-43372942 MsG0280009008.01.T01:CDS 35.0%
CTAAAAAGTTCAGTCCGATT+TGG - Chr2:43372630-43372649 None:intergenic 35.0%
CTGGACCTTTGCATATATTA+TGG + Chr2:43371463-43371482 MsG0280009008.01.T01:intron 35.0%
GAACAGTTAAGGAAGTTGAA+TGG + Chr2:43373111-43373130 MsG0280009008.01.T01:intron 35.0%
GGGATTTAGTAAAAAGGTGA+GGG - Chr2:43371259-43371278 None:intergenic 35.0%
GTAGGGGAAATAAGAATAGA+AGG + Chr2:43373193-43373212 MsG0280009008.01.T01:intron 35.0%
TAAAGGAGGAAAACAATACG+TGG - Chr2:43373808-43373827 None:intergenic 35.0%
TAACAAATCTTTAGCCCCAA+GGG - Chr2:43372116-43372135 None:intergenic 35.0%
TAGAAACATCTGCTCTTACA+AGG - Chr2:43373946-43373965 None:intergenic 35.0%
TCAACTGAACCTGATTCAAA+GGG - Chr2:43373974-43373993 None:intergenic 35.0%
TGAGAAGTTACTATCACATG+AGG + Chr2:43372746-43372765 MsG0280009008.01.T01:intron 35.0%
TGGGATTTAGTAAAAAGGTG+AGG - Chr2:43371260-43371279 None:intergenic 35.0%
TTGATAAGAAAAGGTCCTGT+TGG + Chr2:43372378-43372397 MsG0280009008.01.T01:CDS 35.0%
TTGGATTATTCTTGCCTAAG+TGG + Chr2:43371601-43371620 MsG0280009008.01.T01:intron 35.0%
TTGTAAGAGCAGATGTTTCT+AGG + Chr2:43373945-43373964 MsG0280009008.01.T01:CDS 35.0%
! AAAAAGCATACCTCTTCATC+AGG - Chr2:43372982-43373001 None:intergenic 35.0%
! ACAGGACCTTTTCTTATCAA+TGG - Chr2:43372378-43372397 None:intergenic 35.0%
! AGAACTCAAACTTTTCCTTC+AGG + Chr2:43372287-43372306 MsG0280009008.01.T01:intron 35.0%
! CAAATCGGACTGAACTTTTT+AGG + Chr2:43372628-43372647 MsG0280009008.01.T01:CDS 35.0%
! CATATTACTTACAGCATTGG+AGG - Chr2:43374038-43374057 None:intergenic 35.0%
! TCCAGATTTGGCAAATTTTC+GGG - Chr2:43373697-43373716 None:intergenic 35.0%
! TCTACTAGTTCTCTTAGAGT+GGG - Chr2:43372038-43372057 None:intergenic 35.0%
!! AAAGGTTGATGTATTTGGTC+CGG - Chr2:43371955-43371974 None:intergenic 35.0%
!! AAGTTGGCTTTATATGCATG+AGG + Chr2:43372412-43372431 MsG0280009008.01.T01:intron 35.0%
!! AGTTGGCTTTATATGCATGA+GGG + Chr2:43372413-43372432 MsG0280009008.01.T01:intron 35.0%
!! GTTGGTCTTAACTTGTAAGT+TGG + Chr2:43372396-43372415 MsG0280009008.01.T01:intron 35.0%
!!! AGGTGTTTTGGTAGACATAT+CGG + Chr2:43373063-43373082 MsG0280009008.01.T01:intron 35.0%
!!! CGTGTTTTGGAGGTTTTTAT+AGG + Chr2:43371835-43371854 MsG0280009008.01.T01:intron 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+GGG + Chr2:43371432-43371451 MsG0280009008.01.T01:intron 35.0%
AACAAATCTTTAGCCCCAAG+GGG - Chr2:43372115-43372134 None:intergenic 40.0%
AACTCACACACATCACACAA+AGG + Chr2:43373374-43373393 MsG0280009008.01.T01:intron 40.0%
ACAATCAAACCACCTTTAGC+AGG - Chr2:43373645-43373664 None:intergenic 40.0%
ACTTCAGGTCAGCAATATAC+AGG + Chr2:43372502-43372521 MsG0280009008.01.T01:intron 40.0%
ATGAAGGAAATGAGAAGCAG+CGG - Chr2:43371207-43371226 None:intergenic 40.0%
CAACATGTTGAATGCAAGTC+TGG + Chr2:43372070-43372089 MsG0280009008.01.T01:intron 40.0%
CGTCAAAATTTCAGGCAAAG+TGG + Chr2:43372946-43372965 MsG0280009008.01.T01:CDS 40.0%
CTAACAAATCTTTAGCCCCA+AGG - Chr2:43372117-43372136 None:intergenic 40.0%
GATTCTCCGTTCTACTACAA+TGG + Chr2:43371166-43371185 MsG0280009008.01.T01:exon 40.0%
GCTTCGTACTTAAATCCTGA+AGG - Chr2:43372305-43372324 None:intergenic 40.0%
GGACAGTTAGAGAACAGTTA+AGG + Chr2:43373100-43373119 MsG0280009008.01.T01:intron 40.0%
GGCACGAATATTGAACCTTT+GGG - Chr2:43371312-43371331 None:intergenic 40.0%
TAATGTTTCCCCTTTGCATG+AGG + Chr2:43373868-43373887 MsG0280009008.01.T01:intron 40.0%
TAGAGCAATTACTCCAGAGT+AGG - Chr2:43373721-43373740 None:intergenic 40.0%
TCAGATATCCTCATGCAAAG+GGG - Chr2:43373879-43373898 None:intergenic 40.0%
TCAGGATTTAAGTACGAAGC+AGG + Chr2:43372305-43372324 MsG0280009008.01.T01:intron 40.0%
TCCCGAAAATTTGCCAAATC+TGG + Chr2:43373693-43373712 MsG0280009008.01.T01:CDS 40.0%
TCTGTTCGTTTGAGAGTTTG+TGG + Chr2:43373222-43373241 MsG0280009008.01.T01:intron 40.0%
TGGCACGAATATTGAACCTT+TGG - Chr2:43371313-43371332 None:intergenic 40.0%
TTAAGTACGAAGCAGGATCA+GGG + Chr2:43372312-43372331 MsG0280009008.01.T01:CDS 40.0%
TTGATTGTCGATGTTAGCTG+TGG + Chr2:43373657-43373676 MsG0280009008.01.T01:CDS 40.0%
TTGTAGTAGAACGGAGAATC+GGG - Chr2:43371166-43371185 None:intergenic 40.0%
TTTAAGTACGAAGCAGGATC+AGG + Chr2:43372311-43372330 MsG0280009008.01.T01:CDS 40.0%
! ACTCTTCTTTTCCCACACTA+TGG - Chr2:43371914-43371933 None:intergenic 40.0%
! CACTCTAAGAGAACTAGTAG+AGG + Chr2:43372037-43372056 MsG0280009008.01.T01:intron 40.0%
! CTACTAGTTCTCTTAGAGTG+GGG - Chr2:43372037-43372056 None:intergenic 40.0%
! CTAGAGGTTTTTCCTTCCTT+TGG - Chr2:43371728-43371747 None:intergenic 40.0%
! CTCTACTAGTTCTCTTAGAG+TGG - Chr2:43372039-43372058 None:intergenic 40.0%
! GATGTATTTGGTCCGGATTT+TGG - Chr2:43371948-43371967 None:intergenic 40.0%
! TATAGGGTGCTTATGCCATT+CGG + Chr2:43371852-43371871 MsG0280009008.01.T01:intron 40.0%
!! AGTAAAAAGGTGAGGGCATT+TGG - Chr2:43371252-43371271 None:intergenic 40.0%
!! GTAAAAAGGTGAGGGCATTT+GGG - Chr2:43371251-43371270 None:intergenic 40.0%
!! TAAAAAGGTGAGGGCATTTG+GGG - Chr2:43371250-43371269 None:intergenic 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+GGG + Chr2:43371433-43371452 MsG0280009008.01.T01:intron 40.0%
AAGCGGCCATTGTAGTAGAA+CGG - Chr2:43371175-43371194 None:intergenic 45.0%
ACATCACACAAAGGAAGCTG+CGG + Chr2:43373383-43373402 MsG0280009008.01.T01:intron 45.0%
AGCTTAGTAAGTACTCCCTC+CGG + Chr2:43371746-43371765 MsG0280009008.01.T01:intron 45.0%
AGGTCAGCAATATACAGGTC+TGG + Chr2:43372507-43372526 MsG0280009008.01.T01:intron 45.0%
CTCTATTAGACCAACCCCTT+GGG + Chr2:43372098-43372117 MsG0280009008.01.T01:intron 45.0%
GACGCCAACCTCTTTCATAT+AGG - Chr2:43372930-43372949 None:intergenic 45.0%
GAGGTTGGCGTCAAAATTTC+AGG + Chr2:43372938-43372957 MsG0280009008.01.T01:CDS 45.0%
GAGTACTTTGAGCCTGCTAA+AGG + Chr2:43373630-43373649 MsG0280009008.01.T01:CDS 45.0%
GCACAAGAAACTCAGAGGAT+GGG - Chr2:43371780-43371799 None:intergenic 45.0%
GTACATTGCAACTACAGTGC+TGG - Chr2:43373008-43373027 None:intergenic 45.0%
TACTTTGAGCCTGCTAAAGG+TGG + Chr2:43373633-43373652 MsG0280009008.01.T01:CDS 45.0%
TCCAGAGTAGGTTCCAGATT+TGG - Chr2:43373709-43373728 None:intergenic 45.0%
TCTAGGCTTCCCTTTGAATC+AGG + Chr2:43373962-43373981 MsG0280009008.01.T01:CDS 45.0%
TCTATTAGACCAACCCCTTG+GGG + Chr2:43372099-43372118 MsG0280009008.01.T01:intron 45.0%
TGGATCTGACAGTGACTTCT+GGG + Chr2:43372580-43372599 MsG0280009008.01.T01:CDS 45.0%
TTCTGCATGGTTCAACCACT+TGG + Chr2:43372850-43372869 MsG0280009008.01.T01:intron 45.0%
! GGCTTTATATGCATGAGGGA+AGG + Chr2:43372417-43372436 MsG0280009008.01.T01:intron 45.0%
! GGTTTTTCCTTCCTTTGGAC+TGG - Chr2:43371723-43371742 None:intergenic 45.0%
! TCAGTTGATGCAGTTCATGC+TGG + Chr2:43373986-43374005 MsG0280009008.01.T01:CDS 45.0%
! TGAACCTTTGGGTTTGAGAG+CGG - Chr2:43371301-43371320 None:intergenic 45.0%
!! GGGAGTACTTACTAAGCTAG+AGG - Chr2:43371744-43371763 None:intergenic 45.0%
AAAGGTCCAGGTTCAAACCC+CGG - Chr2:43371453-43371472 None:intergenic 50.0%
AATCTTTAGCCCCAAGGGGT+TGG - Chr2:43372111-43372130 None:intergenic 50.0%
AGACTCCACAACAACAGCAG+AGG - Chr2:43371336-43371355 None:intergenic 50.0%
CACTAGCAAAGACGGGTATC+TGG + Chr2:43372560-43372579 MsG0280009008.01.T01:CDS 50.0%
CAGTGGGGAAGAAAGAAGCT+TGG + Chr2:43371105-43371124 MsG0280009008.01.T01:five_prime_UTR 50.0%
CATACCTCTTCATCAGGACC+AGG - Chr2:43372976-43372995 None:intergenic 50.0%
CGCACAAGAAACTCAGAGGA+TGG - Chr2:43371781-43371800 None:intergenic 50.0%
CTGATGACACTCCAGTCCAA+AGG + Chr2:43371709-43371728 MsG0280009008.01.T01:intron 50.0%
CTGGATCTGACAGTGACTTC+TGG + Chr2:43372579-43372598 MsG0280009008.01.T01:CDS 50.0%
CTTTCCTGGTCCTGATGAAG+AGG + Chr2:43372969-43372988 MsG0280009008.01.T01:CDS 50.0%
GCGCGAGAAATCCATAGTGT+GGG + Chr2:43371900-43371919 MsG0280009008.01.T01:intron 50.0%
GCTCTATTAGACCAACCCCT+TGG + Chr2:43372097-43372116 MsG0280009008.01.T01:intron 50.0%
GTCGATGTTAGCTGTGGAAG+TGG + Chr2:43373663-43373682 MsG0280009008.01.T01:CDS 50.0%
TCTCGCGCGCCTATAAAGTT+CGG - Chr2:43371888-43371907 None:intergenic 50.0%
TGACACTCCAGTCCAAAGGA+AGG + Chr2:43371713-43371732 MsG0280009008.01.T01:intron 50.0%
TGGGGAAGAAAGAAGCTTGG+CGG + Chr2:43371108-43371127 MsG0280009008.01.T01:five_prime_UTR 50.0%
TGTTGTTGTGGAGTCTCCGT+CGG + Chr2:43371340-43371359 MsG0280009008.01.T01:CDS 50.0%
TTCAGGCAAAGTGGCTTTCC+TGG + Chr2:43372955-43372974 MsG0280009008.01.T01:CDS 50.0%
TTCTCCGCTCTCAAACCCAA+AGG + Chr2:43371294-43371313 MsG0280009008.01.T01:CDS 50.0%
! CTTACAGCATTGGAGGGAGA+TGG - Chr2:43374031-43374050 None:intergenic 50.0%
! GCCAAATCTGGAACCTACTC+TGG + Chr2:43373705-43373724 MsG0280009008.01.T01:CDS 50.0%
! TTTGGGTTTGAGAGCGGAGA+AGG - Chr2:43371295-43371314 None:intergenic 50.0%
AGCAGCGGTAGTAGCAGAAG+CGG - Chr2:43371192-43371211 None:intergenic 55.0%
AGGGCGCACAAGAAACTCAG+AGG - Chr2:43371785-43371804 None:intergenic 55.0%
CGCGCGAGAAATCCATAGTG+TGG + Chr2:43371899-43371918 MsG0280009008.01.T01:intron 55.0%
CTCCACAACAACAGCAGAGG+TGG - Chr2:43371333-43371352 None:intergenic 55.0%
TGCCACCTCTGCTGTTGTTG+TGG + Chr2:43371328-43371347 MsG0280009008.01.T01:CDS 55.0%
TTTGAGAGCGGAGAAGGCGA+GGG - Chr2:43371289-43371308 None:intergenic 55.0%
!! CAGAGGATGGGCTTTGAGAC+CGG - Chr2:43371768-43371787 None:intergenic 55.0%
!! CTGGTGCTGCTTTGCATTGC+TGG + Chr2:43374005-43374024 MsG0280009008.01.T01:CDS 55.0%
GAGAAGGCGAGGGCGAAAGT+GGG - Chr2:43371279-43371298 None:intergenic 60.0%
GTTTGAGAGCGGAGAAGGCG+AGG - Chr2:43371290-43371309 None:intergenic 60.0%
!! AGGATGGGCTTTGAGACCGG+AGG - Chr2:43371765-43371784 None:intergenic 60.0%
!! GGATGGGCTTTGAGACCGGA+GGG - Chr2:43371764-43371783 None:intergenic 60.0%
GGAGAAGGCGAGGGCGAAAG+TGG - Chr2:43371280-43371299 None:intergenic 65.0%
TGGTGGCCGGGGTTTGAACC+TGG + Chr2:43371444-43371463 MsG0280009008.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 43371104 43374063 43371104 ID=MsG0280009008.01;Name=MsG0280009008.01
Chr2 mRNA 43371104 43374063 43371104 ID=MsG0280009008.01.T01;Parent=MsG0280009008.01;Name=MsG0280009008.01.T01;_AED=0.49;_eAED=0.49;_QI=81|1|0.83|1|1|1|6|0|274
Chr2 exon 43371104 43371361 43371104 ID=MsG0280009008.01.T01:exon:27667;Parent=MsG0280009008.01.T01
Chr2 exon 43372309 43372409 43372309 ID=MsG0280009008.01.T01:exon:27668;Parent=MsG0280009008.01.T01
Chr2 exon 43372509 43372649 43372509 ID=MsG0280009008.01.T01:exon:27669;Parent=MsG0280009008.01.T01
Chr2 exon 43372909 43372990 43372909 ID=MsG0280009008.01.T01:exon:27670;Parent=MsG0280009008.01.T01
Chr2 exon 43373615 43373808 43373615 ID=MsG0280009008.01.T01:exon:27671;Parent=MsG0280009008.01.T01
Chr2 exon 43373934 43374063 43373934 ID=MsG0280009008.01.T01:exon:27672;Parent=MsG0280009008.01.T01
Chr2 five_prime_UTR 43371104 43371184 43371104 ID=MsG0280009008.01.T01:five_prime_utr;Parent=MsG0280009008.01.T01
Chr2 CDS 43371185 43371361 43371185 ID=MsG0280009008.01.T01:cds;Parent=MsG0280009008.01.T01
Chr2 CDS 43372309 43372409 43372309 ID=MsG0280009008.01.T01:cds;Parent=MsG0280009008.01.T01
Chr2 CDS 43372509 43372649 43372509 ID=MsG0280009008.01.T01:cds;Parent=MsG0280009008.01.T01
Chr2 CDS 43372909 43372990 43372909 ID=MsG0280009008.01.T01:cds;Parent=MsG0280009008.01.T01
Chr2 CDS 43373615 43373808 43373615 ID=MsG0280009008.01.T01:cds;Parent=MsG0280009008.01.T01
Chr2 CDS 43373934 43374063 43373934 ID=MsG0280009008.01.T01:cds;Parent=MsG0280009008.01.T01
Gene Sequence

>MsG0280009008.01.T01

ATGGCCGCTTCTGCTACTACCGCTGCTTCTCATTTCCTTCATCCTCTTAATCAAATACAATTCCCCAAATGCCCTCACCTTTTTACTAAATCCCACTTTCGCCCTCGCCTTCTCCGCTCTCAAACCCAAAGGTTCAATATTCGTGCCACCTCTGCTGTTGTTGTGGAGTCTCCGTCGGATTTAAGTACGAAGCAGGATCAGGGAACAGAAGTTGACTTATTCGCATGCCCTATATGTTATGAACCATTGATAAGAAAAGGTCCTGTTGGTCTTAACTTGTCAGCAATATACAGGTCTGGTTTCAAGTGTAAGAGATGTCAAAAATCATACACTAGCAAAGACGGGTATCTGGATCTGACAGTGACTTCTGGGTTGAGAGATTATGTTGAAGTTCAACCAAATCGGACTGAACTTTTTAGGAGTCCCCTTGTTTCATTCCTATATGAAAGAGGTTGGCGTCAAAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAGAATGGCTCAAGAGTACTTTGAGCCTGCTAAAGGTGGTTTGATTGTCGATGTTAGCTGTGGAAGTGGTCTATTTTCCCGAAAATTTGCCAAATCTGGAACCTACTCTGGAGTAATTGCTCTAGATTTTTCTGAAAATATGCTCCGTCAATGCTACGATTTCATTAAGAAAGATGACACACTATCAACCACTAATCTTGCCCTTGTAAGAGCAGATGTTTCTAGGCTTCCCTTTGAATCAGGTTCAGTTGATGCAGTTCATGCTGGTGCTGCTTTGCATTGCTGGCCATCTCCCTCCAATGCTGTAAGTAATATGTCTTAG

Protein sequence

>MsG0280009008.01.T01

MAASATTAASHFLHPLNQIQFPKCPHLFTKSHFRPRLLRSQTQRFNIRATSAVVVESPSDLSTKQDQGTEVDLFACPICYEPLIRKGPVGLNLSAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGLIVDVSCGSGLFSRKFAKSGTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESGSVDAVHAGAALHCWPSPSNAVSNMS*