AlfalfaGEDB | MsG0380016722.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016722.01

KEGG: -
GO: -
PFAM: PF09739

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016722.01.T01	XP_013461517.1	78.397	574	47	5	1	506	1	565	0	841

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016722.01.T01	Q501D5	60	220	85	2	283	499	335	554	1.92E-79	262

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016722.01.T01	A0A072V141	78.397	574	47	5	1	506	1	565	0.0	841

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048775.01	MsG0380016722.01	0.823131	1.634144e-53	1.394963e-50
MsG0180002397.01	MsG0380016722.01	0.848401	6.275681e-60	1.150312e-56
MsG0180003658.01	MsG0380016722.01	0.845198	4.715114e-59	7.797249e-56
MsG0180003698.01	MsG0380016722.01	0.815076	1.112624e-51	7.595089e-49
MsG0180003857.01	MsG0380016722.01	0.833923	4.034656e-56	4.715120e-53
MsG0180004126.01	MsG0380016722.01	0.830711	2.518489e-55	2.674856e-52
MsG0180004185.01	MsG0380016722.01	0.826392	2.782110e-54	2.605779e-51
MsG0180004299.01	MsG0380016722.01	0.835235	1.887773e-56	2.294648e-53
MsG0180004538.01	MsG0380016722.01	0.807728	4.387225e-50	2.462141e-47
MsG0180004583.01	MsG0380016722.01	0.808763	2.640003e-50	1.522294e-47

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PPI

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Gene1	Gene2	Type
MsG0380016722.01	MsG0880046904.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016722.01.T01	MTR_3g094070	78.397	574	47	5	1	506	1	565	0.0	841

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016722.01.T01	AT2G40550	60.000	220	85	2	283	499	335	554	1.96e-80	262
MsG0380016722.01.T01	AT2G40550	49.451	273	122	5	1	273	1	257	8.89e-79	258

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Find 133 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATTATGATACAAAT+AGG	0.348780	3:-87049501	MsG0380016722.01.T01:intron
AAATGTAATGGAGTTGCAAA+AGG	0.494363	3:-87049278	MsG0380016722.01.T01:intron
AAATTTATTGGTCCTCCACA+CGG	0.599989	3:+87051901	None:intergenic
AACAAAAGGTCAGGGAAGAA+AGG	0.513140	3:+87048308	None:intergenic
AACCATTTGCTTGGAAGCTG+TGG	0.536958	3:-87048936	MsG0380016722.01.T01:CDS
AACTCACGAGTCACGATGGT+GGG	0.544561	3:-87052386	MsG0380016722.01.T01:exon
AAGCAGAAGCTTTGGAAGCT+TGG	0.402078	3:-87048913	MsG0380016722.01.T01:CDS
AAGCTTTGGAAGCTTGGAGG+TGG	0.559758	3:-87048907	MsG0380016722.01.T01:CDS
AATACTCTTGTTCGGTTTCG+TGG	0.411956	3:-87052072	MsG0380016722.01.T01:CDS
AATTCGTGGGCAGAACCTTC+AGG	0.392497	3:-87051584	MsG0380016722.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTTGCTGAAAAATGTAA+TGG	-	Chr3:87051459-87051478	MsG0380016722.01.T01:intron	30.0%
ACAAGGAATGAACTCAATTA+AGG	+	Chr3:87049298-87049317	None:intergenic	30.0%
AGAATGCATAAATCATGTGT+GGG	+	Chr3:87050990-87051009	None:intergenic	30.0%
AGTATTTCCAATAGATTCCT+GGG	-	Chr3:87052135-87052154	MsG0380016722.01.T01:intron	30.0%
ATAAACTGGAAAAATACCAC+TGG	+	Chr3:87049865-87049884	None:intergenic	30.0%
ATTCATAACACAATTGGAGT+TGG	+	Chr3:87049530-87049549	None:intergenic	30.0%
CAAGGAATGAACTCAATTAA+GGG	+	Chr3:87049297-87049316	None:intergenic	30.0%
CATAAACAACTGTTAAACCT+TGG	+	Chr3:87049128-87049147	None:intergenic	30.0%
CATGTCAAAACTTATAAACC+AGG	+	Chr3:87050536-87050555	None:intergenic	30.0%
CTAAGATAATGACAAGTACT+TGG	-	Chr3:87051656-87051675	MsG0380016722.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	87048317	87052454	87048317	ID=MsG0380016722.01;Name=MsG0380016722.01
Chr3	mRNA	87048317	87052454	87048317	ID=MsG0380016722.01.T01;Parent=MsG0380016722.01;Name=MsG0380016722.01.T01;_AED=0.44;_eAED=0.46;_QI=61\|0.8\|0.72\|1\|1\|1\|11\|0\|515
Chr3	exon	87048317	87048442	87048317	ID=MsG0380016722.01.T01:exon:22060;Parent=MsG0380016722.01.T01
Chr3	exon	87048853	87049080	87048853	ID=MsG0380016722.01.T01:exon:22059;Parent=MsG0380016722.01.T01
Chr3	exon	87049279	87049414	87049279	ID=MsG0380016722.01.T01:exon:22058;Parent=MsG0380016722.01.T01
Chr3	exon	87049502	87049689	87049502	ID=MsG0380016722.01.T01:exon:22057;Parent=MsG0380016722.01.T01
Chr3	exon	87050347	87050502	87050347	ID=MsG0380016722.01.T01:exon:22056;Parent=MsG0380016722.01.T01
Chr3	exon	87050627	87050773	87050627	ID=MsG0380016722.01.T01:exon:22055;Parent=MsG0380016722.01.T01
Chr3	exon	87051262	87051306	87051262	ID=MsG0380016722.01.T01:exon:22054;Parent=MsG0380016722.01.T01
Chr3	exon	87051493	87051618	87051493	ID=MsG0380016722.01.T01:exon:22053;Parent=MsG0380016722.01.T01
Chr3	exon	87051817	87051930	87051817	ID=MsG0380016722.01.T01:exon:22052;Parent=MsG0380016722.01.T01
Chr3	exon	87052023	87052136	87052023	ID=MsG0380016722.01.T01:exon:22051;Parent=MsG0380016722.01.T01
Chr3	exon	87052226	87052454	87052226	ID=MsG0380016722.01.T01:exon:22050;Parent=MsG0380016722.01.T01
Chr3	five_prime_UTR	87052394	87052454	87052394	ID=MsG0380016722.01.T01:five_prime_utr;Parent=MsG0380016722.01.T01
Chr3	CDS	87052226	87052393	87052226	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01
Chr3	CDS	87052023	87052136	87052023	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01
Chr3	CDS	87051817	87051930	87051817	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01
Chr3	CDS	87051493	87051618	87051493	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01
Chr3	CDS	87051262	87051306	87051262	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01
Chr3	CDS	87050627	87050773	87050627	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01
Chr3	CDS	87050347	87050502	87050347	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01
Chr3	CDS	87049502	87049689	87049502	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01
Chr3	CDS	87049279	87049414	87049279	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01
Chr3	CDS	87048853	87049080	87048853	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01
Chr3	CDS	87048317	87048442	87048317	ID=MsG0380016722.01.T01:cds;Parent=MsG0380016722.01.T01

Gene Sequence

>MsG0380016722.01.T01

ATGGTGGGCCCACAGTATGATCTTCTCGCCAACCCACTCGGTGCGGTCAGATCCACCTTCGACGCCGCCATAGCCACCGGTTCCGATCCCACTTCTTTAAACAACCGCGACTGGGGCGTCATCGATCTCTTCCGCAACCTTCTTTCCGACCAATCACATCTCTCTCAGGTTCCGCTTCTCACACCAGCCACTATCAGATACGTGAAACCAAATACTCTTGTTCGGTTTCGTGGTATGATTCAGGATATGCTTGGAAATGAATTTTATGTAGGCGCTGTTAAGGATGGTTCCGTGTGGAGGACCAATAAATTTACGGATTTTTCTCAACATTCCATCCCTGTCGGTTGCTCTGCTGATACGCCTATTTGGGAACGGAGATTGCTTTACTGTGTTCCGGTTCCGGGACTGAATTCGTGGGCAGAACCTTCAGGAGAAGCAGTTGGCAATCCATCTATGGATTGGACATCTGAGCAAAGAGAAAAGAGGAGGAGAGGAGATGAAGAGTCTTCTTCTAACATGCCTGTTGAGGGTGATGAGGTTGAAGGTTCTCCTAATACTAAAAGAATGAATTGGTGTGACTCTTACTTTTACAGAGAGAAGGTGAATGCACTTCCCCTGCCTTCTCAGTCTCAGGGAGTTGTAACTGAGATTGCTGGCTCTAGTATGAGTTTATTGCCTGGTCTCAATGGCATCTCATCTAGTTGTATTGTAAAGGTATATGACACACCAGAGTCTGAACTGAAGCTGAATGACATTTTTGAGTTTGTGGGTATCCTTACATCTGATCCAGAACTTCAGGAGGACAACGAAGATAGTGATTTATCAAATGGATTTGGTGAAGATCCCTTGCATCATTTCCCAGCTGACAAGGGTAGATGCTCTTGCTGTGGGAAAGTTTTCAGTAAATTTTACTTGTTTAGCAAAGAAACTGCATCTATCGGAAAACAACTAAACCATGCTGTCAAGAACCTCGTGCCTTTCACACATTGCATACCCCTTACAGTGGAATACTTGAACACTGCTTCTCTTGCACCAAAAAAGAATTATGATACAAATAGATTAGAAACTGGTGTCTTGCAACTAGCTGAAGGTTCGCATTTAATTGTTGATGAGACACAATTAAAAGCTGGAACTCTCAATTCTGTGGGTGTAGAGAATGCAAGGTTGCTGAAAAATGTAATGGAGTTGCAAAAGGTGGAATATGATTTCAAGTACTATAAAATGGAAATGGCAACTGATGTCCAACTGTTAGTTTTGTCTGAGGGGAAATCAAATATCTTACCAGCTGATGTAATTGTACCTATCCGGCCTTCTGCAACCATTTGCTTGGAAGCTGTGGAAGCAGAAGCTTTGGAAGCTTGGAGGTGGTATTTAGCAACTGTTAGACAACTGCCACACTCTTTTGAATCAGAAACTCAGCAGGTGGTAGAAAGTGATTTAGTTGCCGCAATACAAGCAGATAGGAGTTTGAATACCCAAGATTTAAGCAGGTTTGTGATTGACTATATTACATGTCTTGTCATTTTGTTTGCAGCCTTTCTTCCCTGA

Protein sequence

>MsG0380016722.01.T01

MVGPQYDLLANPLGAVRSTFDAAIATGSDPTSLNNRDWGVIDLFRNLLSDQSHLSQVPLLTPATIRYVKPNTLVRFRGMIQDMLGNEFYVGAVKDGSVWRTNKFTDFSQHSIPVGCSADTPIWERRLLYCVPVPGLNSWAEPSGEAVGNPSMDWTSEQREKRRRGDEESSSNMPVEGDEVEGSPNTKRMNWCDSYFYREKVNALPLPSQSQGVVTEIAGSSMSLLPGLNGISSSCIVKVYDTPESELKLNDIFEFVGILTSDPELQEDNEDSDLSNGFGEDPLHHFPADKGRCSCCGKVFSKFYLFSKETASIGKQLNHAVKNLVPFTHCIPLTVEYLNTASLAPKKNYDTNRLETGVLQLAEGSHLIVDETQLKAGTLNSVGVENARLLKNVMELQKVEYDFKYYKMEMATDVQLLVLSEGKSNILPADVIVPIRPSATICLEAVEAEALEAWRWYLATVRQLPHSFESETQQVVESDLVAAIQADRSLNTQDLSRFVIDYITCLVILFAAFLP*