Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005193.01.T01 | XP_003591882.4 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 1.05E-83 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005193.01.T01 | A0A396JW17 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 5.02e-84 | 250 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047791.01 | MsG0180005193.01 | 0.807585 | 4.703146e-50 | 2.629479e-47 |
| MsG0080048618.01 | MsG0180005193.01 | 0.807483 | 4.944251e-50 | 2.757142e-47 |
| MsG0180000152.01 | MsG0180005193.01 | 0.818909 | 1.532306e-52 | 1.162128e-49 |
| MsG0180000550.01 | MsG0180005193.01 | 0.841291 | 5.195155e-58 | 7.597805e-55 |
| MsG0180000679.01 | MsG0180005193.01 | 0.802685 | 4.990062e-49 | 2.459771e-46 |
| MsG0180001063.01 | MsG0180005193.01 | 0.819939 | 8.923194e-53 | 6.963668e-50 |
| MsG0180002459.01 | MsG0180005193.01 | 0.801057 | 1.077669e-48 | 5.097604e-46 |
| MsG0180002482.01 | MsG0180005193.01 | 0.846405 | 2.217328e-59 | 3.812623e-56 |
| MsG0180003952.01 | MsG0180005193.01 | 0.849581 | 2.950781e-60 | 5.619456e-57 |
| MsG0180004108.01 | MsG0180005193.01 | 0.816668 | 4.911296e-52 | 3.502043e-49 |
| MsG0180004765.01 | MsG0180005193.01 | 0.802902 | 4.499583e-49 | 2.230388e-46 |
| MsG0180005193.01 | MsG0180005424.01 | 0.820506 | 6.616593e-53 | 5.245127e-50 |
| MsG0180005193.01 | MsG0180005990.01 | 0.814731 | 1.326925e-51 | 8.974284e-49 |
| MsG0180005193.01 | MsG0180006096.01 | 0.811496 | 6.801241e-51 | 4.216643e-48 |
| MsG0180005193.01 | MsG0180006144.01 | 0.871044 | 9.220202e-67 | 3.666226e-63 |
| MsG0180005193.01 | MsG0180006220.01 | 0.844154 | 9.014509e-59 | 1.442434e-55 |
| MsG0180005193.01 | MsG0280006491.01 | 0.801515 | 8.683756e-49 | 4.155107e-46 |
| MsG0180005193.01 | MsG0280006593.01 | 0.803982 | 2.688008e-49 | 1.369869e-46 |
| MsG0180005193.01 | MsG0280007547.01 | 0.802665 | 5.038053e-49 | 2.482094e-46 |
| MsG0180005193.01 | MsG0280007714.01 | 0.806017 | 1.008830e-49 | 5.417327e-47 |
| MsG0180005193.01 | MsG0280010013.01 | 0.824944 | 6.134884e-54 | 5.513956e-51 |
| MsG0180005193.01 | MsG0280010204.01 | 0.813389 | 2.624292e-51 | 1.711547e-48 |
| MsG0180005193.01 | MsG0280010595.01 | 0.823626 | 1.251945e-53 | 1.083747e-50 |
| MsG0180005193.01 | MsG0280010776.01 | 0.816267 | 6.039782e-52 | 4.259899e-49 |
| MsG0180005193.01 | MsG0280011032.01 | 0.811909 | 5.531127e-51 | 3.466576e-48 |
| MsG0180005193.01 | MsG0280011175.01 | 0.825272 | 5.131914e-54 | 4.655647e-51 |
| MsG0180005193.01 | MsG0280011304.01 | 0.800298 | 1.539145e-48 | 7.141443e-46 |
| MsG0180005193.01 | MsG0280011371.01 | 0.807989 | 3.859398e-50 | 2.180795e-47 |
| MsG0180005193.01 | MsG0380011581.01 | 0.804395 | 2.205200e-49 | 1.135712e-46 |
| MsG0180005193.01 | MsG0380011704.01 | 0.825808 | 3.830411e-54 | 3.528543e-51 |
| MsG0180005193.01 | MsG0380011747.01 | 0.802020 | 6.839897e-49 | 3.314990e-46 |
| MsG0180005193.01 | MsG0380011895.01 | 0.827546 | 1.473564e-54 | 1.427004e-51 |
| MsG0180005193.01 | MsG0380012661.01 | -0.829555 | 4.820866e-55 | 4.950654e-52 |
| MsG0180005193.01 | MsG0380013467.01 | 0.807571 | 4.735769e-50 | 2.646773e-47 |
| MsG0180005193.01 | MsG0380013853.01 | 0.823901 | 1.078891e-53 | 9.412491e-51 |
| MsG0180005193.01 | MsG0380015027.01 | 0.827383 | 1.613028e-54 | 1.554913e-51 |
| MsG0180005193.01 | MsG0380015216.01 | 0.833666 | 4.677861e-56 | 5.423897e-53 |
| MsG0180005193.01 | MsG0380015466.01 | 0.821815 | 3.304326e-53 | 2.717108e-50 |
| MsG0180005193.01 | MsG0380015533.01 | 0.822030 | 2.945855e-53 | 2.436979e-50 |
| MsG0180005193.01 | MsG0380015566.01 | 0.810602 | 1.062573e-50 | 6.433043e-48 |
| MsG0180005193.01 | MsG0380015778.01 | 0.813165 | 2.939094e-51 | 1.904959e-48 |
| MsG0180005193.01 | MsG0380016004.01 | 0.812283 | 4.584082e-51 | 2.902624e-48 |
| MsG0180005193.01 | MsG0380016133.01 | 0.804670 | 1.932801e-49 | 1.002527e-46 |
| MsG0180005193.01 | MsG0380016559.01 | 0.822205 | 2.683013e-53 | 2.230764e-50 |
| MsG0180005193.01 | MsG0380016560.01 | 0.830885 | 2.282207e-55 | 2.436386e-52 |
| MsG0180005193.01 | MsG0380016886.01 | 0.833059 | 6.627061e-56 | 7.546433e-53 |
| MsG0180005193.01 | MsG0380016910.01 | 0.813362 | 2.659472e-51 | 1.733226e-48 |
| MsG0180005193.01 | MsG0380017085.01 | 0.827312 | 1.677052e-54 | 1.613172e-51 |
| MsG0180005193.01 | MsG0380017126.01 | 0.837553 | 4.857572e-57 | 6.332125e-54 |
| MsG0180005193.01 | MsG0380017198.01 | 0.807263 | 5.505963e-50 | 3.052855e-47 |
| MsG0180005193.01 | MsG0380017461.01 | 0.820638 | 6.170439e-53 | 4.909064e-50 |
| MsG0180005193.01 | MsG0380017543.01 | 0.805972 | 1.031212e-49 | 5.531109e-47 |
| MsG0180005193.01 | MsG0380017680.01 | 0.816105 | 6.562836e-52 | 4.608278e-49 |
| MsG0180005193.01 | MsG0380017891.01 | -0.817854 | 2.657579e-52 | 1.957599e-49 |
| MsG0180005193.01 | MsG0380017947.01 | 0.820803 | 5.654295e-53 | 4.519630e-50 |
| MsG0180005193.01 | MsG0480018110.01 | 0.814608 | 1.412851e-51 | 9.523653e-49 |
| MsG0180005193.01 | MsG0480018214.01 | 0.812326 | 4.485616e-51 | 2.843488e-48 |
| MsG0180005193.01 | MsG0480018372.01 | 0.801773 | 7.687276e-49 | 3.702268e-46 |
| MsG0180005193.01 | MsG0480018603.01 | 0.821254 | 4.453286e-53 | 3.604307e-50 |
| MsG0180005193.01 | MsG0480018779.01 | 0.808144 | 3.577166e-50 | 2.029660e-47 |
| MsG0180005193.01 | MsG0480018906.01 | 0.824226 | 9.051083e-54 | 7.968738e-51 |
| MsG0180005193.01 | MsG0480019380.01 | 0.804847 | 1.774585e-49 | 9.247503e-47 |
| MsG0180005193.01 | MsG0480020136.01 | 0.810011 | 1.424946e-50 | 8.494304e-48 |
| MsG0180005193.01 | MsG0480020521.01 | 0.801860 | 7.376357e-49 | 3.560659e-46 |
| MsG0180005193.01 | MsG0480021536.01 | 0.818366 | 2.034648e-52 | 1.520109e-49 |
| MsG0180005193.01 | MsG0480021750.01 | 0.836453 | 9.274560e-57 | 1.169374e-53 |
| MsG0180005193.01 | MsG0480021959.01 | 0.835321 | 1.796232e-56 | 2.189088e-53 |
| MsG0180005193.01 | MsG0480021994.01 | 0.806681 | 7.310020e-50 | 3.992211e-47 |
| MsG0180005193.01 | MsG0480022035.01 | 0.822687 | 2.072786e-53 | 1.747307e-50 |
| MsG0180005193.01 | MsG0480022222.01 | 0.826753 | 2.281860e-54 | 2.159285e-51 |
| MsG0180005193.01 | MsG0480022707.01 | 0.867670 | 1.153629e-65 | 4.060793e-62 |
| MsG0180005193.01 | MsG0480022768.01 | 0.800937 | 1.140316e-48 | 5.377352e-46 |
| MsG0180005193.01 | MsG0480023163.01 | 0.807274 | 5.476588e-50 | 3.037439e-47 |
| MsG0180005193.01 | MsG0480023448.01 | 0.816650 | 4.957499e-52 | 3.533307e-49 |
| MsG0180005193.01 | MsG0480023636.01 | 0.804124 | 2.510913e-49 | 1.284243e-46 |
| MsG0180005193.01 | MsG0480023660.01 | 0.818840 | 1.589072e-52 | 1.202796e-49 |
| MsG0180005193.01 | MsG0580024084.01 | 0.802639 | 5.098752e-49 | 2.510402e-46 |
| MsG0180005193.01 | MsG0580024468.01 | 0.819270 | 1.268132e-52 | 9.712918e-50 |
| MsG0180005193.01 | MsG0580024495.01 | 0.828710 | 7.727374e-55 | 7.741421e-52 |
| MsG0180005193.01 | MsG0580024698.01 | 0.855235 | 7.225975e-62 | 1.656857e-58 |
| MsG0180005193.01 | MsG0580025467.01 | 0.818777 | 1.642419e-52 | 1.240985e-49 |
| MsG0180005193.01 | MsG0580025638.01 | 0.804521 | 2.075785e-49 | 1.072527e-46 |
| MsG0180005193.01 | MsG0580026301.01 | 0.815419 | 9.334831e-52 | 6.432469e-49 |
| MsG0180005193.01 | MsG0580027034.01 | 0.823432 | 1.389808e-53 | 1.196398e-50 |
| MsG0180005193.01 | MsG0580028044.01 | 0.812561 | 3.985964e-51 | 2.542576e-48 |
| MsG0180005193.01 | MsG0580029717.01 | 0.815437 | 9.247805e-52 | 6.375894e-49 |
| MsG0180005193.01 | MsG0680030350.01 | 0.804269 | 2.342523e-49 | 1.202544e-46 |
| MsG0180005193.01 | MsG0680030415.01 | 0.860016 | 2.769822e-63 | 7.462868e-60 |
| MsG0180005193.01 | MsG0680030636.01 | 0.817743 | 2.815157e-52 | 2.067396e-49 |
| MsG0180005193.01 | MsG0680030992.01 | 0.827579 | 1.446961e-54 | 1.402522e-51 |
| MsG0180005193.01 | MsG0680031334.01 | 0.814773 | 1.298627e-51 | 8.792497e-49 |
| MsG0180005193.01 | MsG0680031488.01 | 0.800696 | 1.276835e-48 | 5.984157e-46 |
| MsG0180005193.01 | MsG0680033459.01 | 0.801846 | 7.427161e-49 | 3.583798e-46 |
| MsG0180005193.01 | MsG0680035877.01 | 0.811913 | 5.519621e-51 | 3.459706e-48 |
| MsG0180005193.01 | MsG0780035957.01 | 0.834886 | 2.311796e-56 | 2.780491e-53 |
| MsG0180005193.01 | MsG0780036190.01 | 0.805036 | 1.620070e-49 | 8.482965e-47 |
| MsG0180005193.01 | MsG0780036288.01 | 0.821516 | 3.873396e-53 | 3.157958e-50 |
| MsG0180005193.01 | MsG0780036964.01 | 0.806124 | 9.579737e-50 | 5.158180e-47 |
| MsG0180005193.01 | MsG0780037082.01 | 0.849622 | 2.873372e-60 | 5.479976e-57 |
| MsG0180005193.01 | MsG0780038911.01 | 0.833417 | 5.398719e-56 | 6.213376e-53 |
| MsG0180005193.01 | MsG0780039143.01 | 0.830353 | 3.081341e-55 | 3.238518e-52 |
| MsG0180005193.01 | MsG0780040596.01 | 0.859929 | 2.943446e-63 | 7.906357e-60 |
| MsG0180005193.01 | MsG0780040734.01 | 0.800332 | 1.514479e-48 | 7.033120e-46 |
| MsG0180005193.01 | MsG0780040858.01 | 0.848149 | 7.369040e-60 | 1.339521e-56 |
| MsG0180005193.01 | MsG0780041137.01 | 0.802399 | 5.715498e-49 | 2.797036e-46 |
| MsG0180005193.01 | MsG0780041456.01 | 0.818851 | 1.579678e-52 | 1.196070e-49 |
| MsG0180005193.01 | MsG0780041507.01 | 0.853073 | 3.040502e-61 | 6.488953e-58 |
| MsG0180005193.01 | MsG0880041851.01 | 0.816132 | 6.474150e-52 | 4.549190e-49 |
| MsG0180005193.01 | MsG0880042031.01 | 0.812042 | 5.172438e-51 | 3.253454e-48 |
| MsG0180005193.01 | MsG0880042134.01 | 0.820021 | 8.547786e-53 | 6.686219e-50 |
| MsG0180005193.01 | MsG0880042294.01 | 0.816394 | 5.656138e-52 | 4.003067e-49 |
| MsG0180005193.01 | MsG0880042622.01 | 0.804636 | 1.963995e-49 | 1.017816e-46 |
| MsG0180005193.01 | MsG0880042700.01 | 0.800588 | 1.343446e-48 | 6.279315e-46 |
| MsG0180005193.01 | MsG0880042966.01 | 0.800001 | 1.768624e-48 | 8.144294e-46 |
| MsG0180005193.01 | MsG0880043303.01 | 0.826746 | 2.290136e-54 | 2.166643e-51 |
| MsG0180005193.01 | MsG0880043454.01 | 0.815724 | 7.984378e-52 | 5.548429e-49 |
| MsG0180005193.01 | MsG0880044394.01 | 0.829991 | 3.775932e-55 | 3.927272e-52 |
| MsG0180005193.01 | MsG0880044728.01 | 0.828646 | 8.008666e-55 | 8.008566e-52 |
| MsG0180005193.01 | MsG0880045362.01 | 0.818312 | 2.093749e-52 | 1.561780e-49 |
| MsG0180005193.01 | MsG0880045937.01 | 0.809105 | 2.229870e-50 | 1.297674e-47 |
| MsG0180005193.01 | MsG0880046122.01 | 0.809867 | 1.530012e-50 | 9.085875e-48 |
| MsG0180005193.01 | MsG0880046126.01 | 0.847161 | 1.377296e-59 | 2.426540e-56 |
| MsG0180005193.01 | MsG0880046620.01 | 0.818760 | 1.656728e-52 | 1.251233e-49 |
| MsG0180005193.01 | MsG0880046963.01 | -0.808323 | 3.276624e-50 | 1.867953e-47 |
| MsG0180005193.01 | MsG0880047165.01 | 0.802130 | 6.490462e-49 | 3.154504e-46 |
| MsG0180005193.01 | MsG0880047763.01 | 0.836693 | 8.059028e-57 | 1.023421e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005193.01.T01 | MTR_1g094840 | 94.521 | 73 | 4 | 0 | 51 | 123 | 2 | 74 | 8.21e-45 | 140 |
| MsG0180005193.01.T01 | MTR_1g094845 | 100.000 | 40 | 0 | 0 | 1 | 40 | 1 | 40 | 4.37e-23 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005193.01.T01 | AT4G14145 | 73.636 | 110 | 29 | 0 | 12 | 121 | 23 | 132 | 5.19e-60 | 181 |
Find 50 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCATGTCTGTAGAAATTT+TGG | 0.049430 | 1:-88287489 | MsG0180005193.01.T01:three_prime_UTR |
| TTTGGCTTGTAGGCATTTAC+TGG | 0.192977 | 1:+88287862 | None:intergenic |
| CTCTCTCTGCGTTTGTTTGT+TGG | 0.238017 | 1:-88289625 | MsG0180005193.01.T01:five_prime_UTR |
| CGTCTGTCTTCATTTGGTTT+TGG | 0.261237 | 1:+88287687 | None:intergenic |
| TTCAAATTTGAAGGAGTTAT+GGG | 0.270706 | 1:-88287614 | MsG0180005193.01.T01:three_prime_UTR |
| TGAAATCTTCTTTGGCTTGT+AGG | 0.289556 | 1:+88287852 | None:intergenic |
| GTTTGGTTCTACTTTAATAA+TGG | 0.299141 | 1:-88287419 | MsG0180005193.01.T01:three_prime_UTR |
| TCGTCCAATGAAATCTTCTT+TGG | 0.304726 | 1:+88287844 | None:intergenic |
| ATTCAAATTTGAAGGAGTTA+TGG | 0.319563 | 1:-88287615 | MsG0180005193.01.T01:three_prime_UTR |
| TGAATATGTCACTGTCGTTA+TGG | 0.352313 | 1:-88287535 | MsG0180005193.01.T01:three_prime_UTR |
| GAATATGTCACTGTCGTTAT+GGG | 0.361071 | 1:-88287534 | MsG0180005193.01.T01:three_prime_UTR |
| TAGAGTCGTCTGTCTTCATT+TGG | 0.391146 | 1:+88287681 | None:intergenic |
| CAAGCTAAATTCAAATTTGA+AGG | 0.396627 | 1:-88287623 | MsG0180005193.01.T01:three_prime_UTR |
| CAGCTTCCACTTTCAAAAGA+TGG | 0.401072 | 1:-88289301 | MsG0180005193.01.T01:CDS |
| GGAAGACCATATCTAAGAAA+AGG | 0.404394 | 1:+88289266 | None:intergenic |
| ACTGTAAGGTGAACAGTAAA+AGG | 0.409899 | 1:-88287447 | MsG0180005193.01.T01:three_prime_UTR |
| TTCTCATCTGCAAAATGAAC+TGG | 0.412059 | 1:+88287591 | None:intergenic |
| TTCAAGGGTAAAAGATGATA+AGG | 0.421850 | 1:-88287929 | MsG0180005193.01.T01:CDS |
| TTGGCCATCTCTTGCAAGGC+AGG | 0.426488 | 1:-88289208 | MsG0180005193.01.T01:intron |
| TTCAAAAGATGGGGCAGAAA+AGG | 0.426709 | 1:-88289290 | MsG0180005193.01.T01:CDS |
| AACAGTAAAAGGTACATGTT+TGG | 0.427879 | 1:-88287436 | MsG0180005193.01.T01:three_prime_UTR |
| AGCTTCCACTTTCAAAAGAT+GGG | 0.428690 | 1:-88289300 | MsG0180005193.01.T01:CDS |
| CAAGCCAAAGAAGATTTCAT+TGG | 0.434340 | 1:-88287848 | MsG0180005193.01.T01:CDS |
| TTCATTGGACGATGAGCTAA+AGG | 0.458241 | 1:-88287833 | MsG0180005193.01.T01:intron |
| CTTCAAATTTGAATTTAGCT+TGG | 0.461085 | 1:+88287624 | None:intergenic |
| GCCTCAAATGATCCACCATA+TGG | 0.465326 | 1:+88289694 | None:intergenic |
| AAAACAGTAAGAGAGATCAT+AGG | 0.465383 | 1:+88289245 | None:intergenic |
| TCTGAATTGTAGTCATTGAT+TGG | 0.475537 | 1:+88289360 | None:intergenic |
| AATGACTACAATTCAGAGTC+AGG | 0.476336 | 1:-88289354 | MsG0180005193.01.T01:CDS |
| GGTAAAAGATGATAAGGAAT+GGG | 0.482081 | 1:-88287923 | MsG0180005193.01.T01:CDS |
| GTCGTTATGGGAGAGGTAGT+TGG | 0.482430 | 1:-88287522 | MsG0180005193.01.T01:three_prime_UTR |
| GAAGACCATATCTAAGAAAA+GGG | 0.484806 | 1:+88289267 | None:intergenic |
| AGAAAAGCACTATCTAGAAC+AGG | 0.488306 | 1:-88287886 | MsG0180005193.01.T01:CDS |
| TTCCCAGCAAGGATATTTCA+AGG | 0.489455 | 1:-88287945 | MsG0180005193.01.T01:intron |
| TCGTTATGGGAGAGGTAGTT+GGG | 0.498380 | 1:-88287521 | MsG0180005193.01.T01:three_prime_UTR |
| TCCATATGGTGGATCATTTG+AGG | 0.502653 | 1:-88289695 | MsG0180005193.01.T01:five_prime_UTR |
| GGTCTTGGCCATCTCTTGCA+AGG | 0.504678 | 1:-88289212 | MsG0180005193.01.T01:CDS |
| AGTTGAATTATTGATCCATA+TGG | 0.516837 | 1:-88289709 | None:intergenic |
| ACTACAATTCAGAGTCAGGC+TGG | 0.518470 | 1:-88289350 | MsG0180005193.01.T01:CDS |
| GGGTAAAAGATGATAAGGAA+TGG | 0.518508 | 1:-88287924 | MsG0180005193.01.T01:CDS |
| ATTGATTGGTCACACAAAAG+TGG | 0.549415 | 1:+88289374 | None:intergenic |
| TGAATTATTGATCCATATGG+TGG | 0.554233 | 1:-88289706 | None:intergenic |
| TGATGAGAGAAGGACGATGT+AGG | 0.555547 | 1:+88289668 | None:intergenic |
| CTAACCTGCCTTGCAAGAGA+TGG | 0.567713 | 1:+88289204 | None:intergenic |
| AGAGCGGTGGTGATGAGAGA+AGG | 0.570527 | 1:+88289658 | None:intergenic |
| TGTCACTGTCGTTATGGGAG+AGG | 0.578637 | 1:-88287529 | MsG0180005193.01.T01:three_prime_UTR |
| ACCCAAAATTTCTACAGACA+TGG | 0.597759 | 1:+88287487 | None:intergenic |
| GAGAGAGAGAGCGAGAGCGG+TGG | 0.609044 | 1:+88289645 | None:intergenic |
| TCCCAGCAAGGATATTTCAA+GGG | 0.609944 | 1:-88287944 | MsG0180005193.01.T01:intron |
| GCTTCCACTTTCAAAAGATG+GGG | 0.632856 | 1:-88289299 | MsG0180005193.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTATATAGCAAAT+GGG | + | Chr1:88288085-88288104 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTATATAGCAAA+TGG | + | Chr1:88288086-88288105 | None:intergenic | 10.0% |
| !! | ATCATTAATGAATAAATAAG+TGG | - | Chr1:88288249-88288268 | MsG0180005193.01.T01:intron | 15.0% |
| !! | CAATATAAGAATTCAATATA+AGG | + | Chr1:88288650-88288669 | None:intergenic | 15.0% |
| !! | GTAAAACAAGATAAAAATAA+AGG | + | Chr1:88289083-88289102 | None:intergenic | 15.0% |
| !!! | AGAGATTTTTATATTTTACT+TGG | - | Chr1:88288754-88288773 | MsG0180005193.01.T01:intron | 15.0% |
| !!! | TATTTTTTATATAGCAAATG+GGG | + | Chr1:88288084-88288103 | None:intergenic | 15.0% |
| !!! | TTTGCTAATTATAAGTTTTA+AGG | - | Chr1:88288384-88288403 | MsG0180005193.01.T01:intron | 15.0% |
| !! | AAATATAAAAATCTCTGCTT+TGG | + | Chr1:88288750-88288769 | None:intergenic | 20.0% |
| !! | ACAGAATAAATGAAAATAAG+AGG | - | Chr1:88288723-88288742 | MsG0180005193.01.T01:intron | 20.0% |
| !! | CAAGATAAAAATAAAGGATT+TGG | + | Chr1:88289077-88289096 | None:intergenic | 20.0% |
| !! | CAGAATAAATGAAAATAAGA+GGG | - | Chr1:88288724-88288743 | MsG0180005193.01.T01:intron | 20.0% |
| !! | TAATCATCATGTTATAATGT+AGG | - | Chr1:88288297-88288316 | MsG0180005193.01.T01:intron | 20.0% |
| !! | TAGAGGTTATACAAATTAAA+CGG | + | Chr1:88287585-88287604 | None:intergenic | 20.0% |
| !! | TCAGTGATAAAATACAATAA+TGG | + | Chr1:88287936-88287955 | None:intergenic | 20.0% |
| !! | TTCAATATAAGGAATTAACT+TGG | + | Chr1:88288639-88288658 | None:intergenic | 20.0% |
| !!! | AAATACAATAATGGATGAAA+AGG | + | Chr1:88287927-88287946 | None:intergenic | 20.0% |
| !!! | ATTTTTATTTGTTGTTGCAT+AGG | - | Chr1:88289326-88289345 | MsG0180005193.01.T01:CDS | 20.0% |
| ! | ACACAAATAGAGTAAAATAG+AGG | + | Chr1:88287602-88287621 | None:intergenic | 25.0% |
| ! | ACATTAAATTGCTAATGACA+GGG | + | Chr1:88289284-88289303 | None:intergenic | 25.0% |
| ! | AGCTTGTAAATTGAACAATT+TGG | - | Chr1:88288686-88288705 | MsG0180005193.01.T01:intron | 25.0% |
| ! | AGTTACATATGATACAATAC+AGG | - | Chr1:88288455-88288474 | MsG0180005193.01.T01:intron | 25.0% |
| ! | ATATTACTACAAGTTCTGTT+TGG | - | Chr1:88288797-88288816 | MsG0180005193.01.T01:intron | 25.0% |
| ! | ATTCAAATTTGAAGGAGTTA+TGG | - | Chr1:88289468-88289487 | MsG0180005193.01.T01:intron | 25.0% |
| ! | CAAGCTAAATTCAAATTTGA+AGG | - | Chr1:88289460-88289479 | MsG0180005193.01.T01:intron | 25.0% |
| ! | CTTCAAATTTGAATTTAGCT+TGG | + | Chr1:88289462-88289481 | None:intergenic | 25.0% |
| ! | GTATTGTATCATATGTAACT+TGG | + | Chr1:88288455-88288474 | None:intergenic | 25.0% |
| ! | GTTACATATGATACAATACA+GGG | - | Chr1:88288456-88288475 | MsG0180005193.01.T01:intron | 25.0% |
| ! | TAAATTGAACAATTTGGAGA+CGG | - | Chr1:88288692-88288711 | MsG0180005193.01.T01:intron | 25.0% |
| ! | TAAGATTATATGACTGCAAT+AGG | - | Chr1:88288990-88289009 | MsG0180005193.01.T01:intron | 25.0% |
| ! | TACATTAAATTGCTAATGAC+AGG | + | Chr1:88289285-88289304 | None:intergenic | 25.0% |
| ! | TACATTATGCAAAATAACAG+TGG | + | Chr1:88288941-88288960 | None:intergenic | 25.0% |
| ! | TTCAAATTTGAAGGAGTTAT+GGG | - | Chr1:88289469-88289488 | MsG0180005193.01.T01:intron | 25.0% |
| ! | TTCTTTCAACTACAGAATTA+AGG | + | Chr1:88287688-88287707 | None:intergenic | 25.0% |
| ! | TTGAAACTTTAACCAAATCA+AGG | - | Chr1:88288913-88288932 | MsG0180005193.01.T01:intron | 25.0% |
| !! | TTGCAAAACAAGTTTTTGTA+TGG | - | Chr1:88287512-88287531 | MsG0180005193.01.T01:three_prime_UTR | 25.0% |
| !!! | AAGGATTTTTAAGTACTGTA+AGG | - | Chr1:88289622-88289641 | MsG0180005193.01.T01:five_prime_UTR | 25.0% |
| !!! | ACATTTAATTGCTAGTTTTG+AGG | - | Chr1:88288113-88288132 | MsG0180005193.01.T01:intron | 25.0% |
| !!! | GTTTGGTTCTACTTTAATAA+TGG | - | Chr1:88289664-88289683 | MsG0180005193.01.T01:five_prime_UTR | 25.0% |
| !!! | GTTTTAAGGCTTATGTTATA+TGG | - | Chr1:88288398-88288417 | MsG0180005193.01.T01:intron | 25.0% |
| AAAACAGTAAGAGAGATCAT+AGG | + | Chr1:88287841-88287860 | None:intergenic | 30.0% | |
| AGTTGTATATGCTGTATCTT+TGG | - | Chr1:88288832-88288851 | MsG0180005193.01.T01:intron | 30.0% | |
| CAGTGAGTTTGATGAAATTA+CGG | - | Chr1:88288860-88288879 | MsG0180005193.01.T01:intron | 30.0% | |
| CATTTCATAGACAACAAAAG+TGG | + | Chr1:88288006-88288025 | None:intergenic | 30.0% | |
| GAAGACCATATCTAAGAAAA+GGG | + | Chr1:88287819-88287838 | None:intergenic | 30.0% | |
| GGTAAAAGATGATAAGGAAT+GGG | - | Chr1:88289160-88289179 | MsG0180005193.01.T01:intron | 30.0% | |
| GTTCAATTTACAAGCTAACT+TGG | + | Chr1:88288682-88288701 | None:intergenic | 30.0% | |
| TAAGGCTTATGTTATATGGT+AGG | - | Chr1:88288402-88288421 | MsG0180005193.01.T01:intron | 30.0% | |
| TCTGAATTGTAGTCATTGAT+TGG | + | Chr1:88287726-88287745 | None:intergenic | 30.0% | |
| TTCAAGGGTAAAAGATGATA+AGG | - | Chr1:88289154-88289173 | MsG0180005193.01.T01:intron | 30.0% | |
| ! | AACAGTAAAAGGTACATGTT+TGG | - | Chr1:88289647-88289666 | MsG0180005193.01.T01:five_prime_UTR | 30.0% |
| ! | ATGATCTCTCTTACTGTTTT+TGG | - | Chr1:88287841-88287860 | MsG0180005193.01.T01:CDS | 30.0% |
| ! | TCCATGTCTGTAGAAATTTT+GGG | - | Chr1:88289595-88289614 | MsG0180005193.01.T01:intron | 30.0% |
| ! | TTTGACTTTGCTTGTGTATA+GGG | - | Chr1:88289025-88289044 | MsG0180005193.01.T01:intron | 30.0% |
| !! | TGTAGAAATTTTGGGTATCA+AGG | - | Chr1:88289603-88289622 | MsG0180005193.01.T01:intron | 30.0% |
| AACCACATAATCATCCCAAA+CGG | + | Chr1:88288041-88288060 | None:intergenic | 35.0% | |
| AATGACTACAATTCAGAGTC+AGG | - | Chr1:88287729-88287748 | MsG0180005193.01.T01:CDS | 35.0% | |
| ACCCAAAATTTCTACAGACA+TGG | + | Chr1:88289599-88289618 | None:intergenic | 35.0% | |
| ACTGTAAGGTGAACAGTAAA+AGG | - | Chr1:88289636-88289655 | MsG0180005193.01.T01:five_prime_UTR | 35.0% | |
| AGCTTCCACTTTCAAAAGAT+GGG | - | Chr1:88287783-88287802 | MsG0180005193.01.T01:intron | 35.0% | |
| ATAGCAACTTGTAGCATGTT+CGG | - | Chr1:88288532-88288551 | MsG0180005193.01.T01:intron | 35.0% | |
| ATAGGCTTTGCAACAAAAAG+TGG | - | Chr1:88289344-88289363 | MsG0180005193.01.T01:CDS | 35.0% | |
| ATGCATTGTACATCAGAAGA+AGG | + | Chr1:88289111-88289130 | None:intergenic | 35.0% | |
| ATTGTACATCAGAAGAAGGA+CGG | + | Chr1:88289107-88289126 | None:intergenic | 35.0% | |
| CAAGCCAAAGAAGATTTCAT+TGG | - | Chr1:88289235-88289254 | MsG0180005193.01.T01:CDS | 35.0% | |
| GAATATGTCACTGTCGTTAT+GGG | - | Chr1:88289549-88289568 | MsG0180005193.01.T01:intron | 35.0% | |
| GGAAGACCATATCTAAGAAA+AGG | + | Chr1:88287820-88287839 | None:intergenic | 35.0% | |
| GGGTAAAAGATGATAAGGAA+TGG | - | Chr1:88289159-88289178 | MsG0180005193.01.T01:intron | 35.0% | |
| TATATGACTGCAATAGGAAC+AGG | - | Chr1:88288996-88289015 | MsG0180005193.01.T01:intron | 35.0% | |
| TCGTCCAATGAAATCTTCTT+TGG | + | Chr1:88289242-88289261 | None:intergenic | 35.0% | |
| TGAATATGTCACTGTCGTTA+TGG | - | Chr1:88289548-88289567 | MsG0180005193.01.T01:intron | 35.0% | |
| TGAGGCTTATGCTATATGAT+AGG | - | Chr1:88288131-88288150 | MsG0180005193.01.T01:intron | 35.0% | |
| TTCTCATCTGCAAAATGAAC+TGG | + | Chr1:88289495-88289514 | None:intergenic | 35.0% | |
| ! | AAAGGCCCTTTTCTTAGATA+TGG | - | Chr1:88287811-88287830 | MsG0180005193.01.T01:intron | 35.0% |
| ! | ATTGATTGGTCACACAAAAG+TGG | + | Chr1:88287712-88287731 | None:intergenic | 35.0% |
| ! | CTCCATGTCTGTAGAAATTT+TGG | - | Chr1:88289594-88289613 | MsG0180005193.01.T01:intron | 35.0% |
| ! | GTTTGACTTTGCTTGTGTAT+AGG | - | Chr1:88289024-88289043 | MsG0180005193.01.T01:intron | 35.0% |
| ! | TACCTGTGTTTGTGGATTAA+GGG | - | Chr1:88288159-88288178 | MsG0180005193.01.T01:intron | 35.0% |
| ! | TTACCTGTGTTTGTGGATTA+AGG | - | Chr1:88288158-88288177 | MsG0180005193.01.T01:intron | 35.0% |
| !! | AGAAAAGCACTATCTAGAAC+AGG | - | Chr1:88289197-88289216 | MsG0180005193.01.T01:intron | 35.0% |
| !! | TGAAATCTTCTTTGGCTTGT+AGG | + | Chr1:88289234-88289253 | None:intergenic | 35.0% |
| AAGTCAGCTACTCACTTTAG+AGG | - | Chr1:88288195-88288214 | MsG0180005193.01.T01:intron | 40.0% | |
| ACCCTTGAAATATCCTTGCT+GGG | + | Chr1:88289143-88289162 | None:intergenic | 40.0% | |
| AGGAGATTTACCTGTGTTTG+TGG | - | Chr1:88288151-88288170 | MsG0180005193.01.T01:intron | 40.0% | |
| AGTCAGCTACTCACTTTAGA+GGG | - | Chr1:88288196-88288215 | MsG0180005193.01.T01:intron | 40.0% | |
| ATAACAGTGGCACCTTGATT+TGG | + | Chr1:88288928-88288947 | None:intergenic | 40.0% | |
| ATGTCGTCTGTATATCCGTT+TGG | - | Chr1:88288023-88288042 | MsG0180005193.01.T01:intron | 40.0% | |
| CAGCTTCCACTTTCAAAAGA+TGG | - | Chr1:88287782-88287801 | MsG0180005193.01.T01:intron | 40.0% | |
| GCTTCCACTTTCAAAAGATG+GGG | - | Chr1:88287784-88287803 | MsG0180005193.01.T01:intron | 40.0% | |
| GGATGATTATGTGGTTTGAC+GGG | - | Chr1:88288045-88288064 | MsG0180005193.01.T01:intron | 40.0% | |
| GGGATGATTATGTGGTTTGA+CGG | - | Chr1:88288044-88288063 | MsG0180005193.01.T01:intron | 40.0% | |
| TACCCTTGAAATATCCTTGC+TGG | + | Chr1:88289144-88289163 | None:intergenic | 40.0% | |
| TAGAGTCGTCTGTCTTCATT+TGG | + | Chr1:88289405-88289424 | None:intergenic | 40.0% | |
| TCCCAGCAAGGATATTTCAA+GGG | - | Chr1:88289139-88289158 | MsG0180005193.01.T01:intron | 40.0% | |
| TGTCGTCTGTATATCCGTTT+GGG | - | Chr1:88288024-88288043 | MsG0180005193.01.T01:intron | 40.0% | |
| TTCAAAAGATGGGGCAGAAA+AGG | - | Chr1:88287793-88287812 | MsG0180005193.01.T01:intron | 40.0% | |
| TTCATTGGACGATGAGCTAA+AGG | - | Chr1:88289250-88289269 | MsG0180005193.01.T01:CDS | 40.0% | |
| TTCCCAGCAAGGATATTTCA+AGG | - | Chr1:88289138-88289157 | MsG0180005193.01.T01:intron | 40.0% | |
| TTGTAGCATGTTCGGAATCA+CGG | - | Chr1:88288540-88288559 | MsG0180005193.01.T01:intron | 40.0% | |
| ! | ATCCGTTTGGGATGATTATG+TGG | - | Chr1:88288036-88288055 | MsG0180005193.01.T01:intron | 40.0% |
| ! | ATTTTATCACTGAGTGCCTC+TGG | - | Chr1:88287943-88287962 | MsG0180005193.01.T01:intron | 40.0% |
| !! | ATTATGTGGTTTGACGGGTT+AGG | - | Chr1:88288050-88288069 | MsG0180005193.01.T01:intron | 40.0% |
| !! | CGTCTGTCTTCATTTGGTTT+TGG | + | Chr1:88289399-88289418 | None:intergenic | 40.0% |
| !! | TCCATATGGTGGATCATTTG+AGG | - | Chr1:88287388-88287407 | MsG0180005193.01.T01:three_prime_UTR | 40.0% |
| !! | TTTGGCTTGTAGGCATTTAC+TGG | + | Chr1:88289224-88289243 | None:intergenic | 40.0% |
| !!! | CTTACTGTTTTTGGTGCTCT+TGG | - | Chr1:88287850-88287869 | MsG0180005193.01.T01:CDS | 40.0% |
| ACTACAATTCAGAGTCAGGC+TGG | - | Chr1:88287733-88287752 | MsG0180005193.01.T01:CDS | 45.0% | |
| CTCTCTCTGCGTTTGTTTGT+TGG | - | Chr1:88287458-88287477 | MsG0180005193.01.T01:three_prime_UTR | 45.0% | |
| GACCCTTAATCCACAAACAC+AGG | + | Chr1:88288164-88288183 | None:intergenic | 45.0% | |
| GATGAAATTCATTCACCGCG+CGG | - | Chr1:88288562-88288581 | MsG0180005193.01.T01:intron | 45.0% | |
| GCCTCAAATGATCCACCATA+TGG | + | Chr1:88287392-88287411 | None:intergenic | 45.0% | |
| TCGTTATGGGAGAGGTAGTT+GGG | - | Chr1:88289562-88289581 | MsG0180005193.01.T01:intron | 45.0% | |
| TGATGAGAGAAGGACGATGT+AGG | + | Chr1:88287418-88287437 | None:intergenic | 45.0% | |
| TGGACGATGAGCTAAAGGTT+TGG | - | Chr1:88289255-88289274 | MsG0180005193.01.T01:CDS | 45.0% | |
| ! | AAGTGAGTAGCTGACTTCAG+AGG | + | Chr1:88288192-88288211 | None:intergenic | 45.0% |
| ! | TTTTCCACAGTAGCAACGTG+TGG | + | Chr1:88288608-88288627 | None:intergenic | 45.0% |
| !! | TCTGCCCCATCTTTTGAAAG+TGG | + | Chr1:88287791-88287810 | None:intergenic | 45.0% |
| !!! | GTTTTTGGTGCTCTTGGTCT+TGG | - | Chr1:88287856-88287875 | MsG0180005193.01.T01:CDS | 45.0% |
| !! | AACAAATAAAAATTAAATTA+TGG | + | Chr1:88289319-88289338 | None:intergenic | 5.0% |
| CTAACCTGCCTTGCAAGAGA+TGG | + | Chr1:88287882-88287901 | None:intergenic | 50.0% | |
| GTCGTTATGGGAGAGGTAGT+TGG | - | Chr1:88289561-88289580 | MsG0180005193.01.T01:intron | 50.0% | |
| GTGTGGTGAACATGAGATGC+AGG | + | Chr1:88288591-88288610 | None:intergenic | 50.0% | |
| TGTCACTGTCGTTATGGGAG+AGG | - | Chr1:88289554-88289573 | MsG0180005193.01.T01:intron | 50.0% | |
| TTCACCACACGTTGCTACTG+TGG | - | Chr1:88288601-88288620 | MsG0180005193.01.T01:intron | 50.0% | |
| AGAGAGAGAGAGAGCGAGAG+CGG | + | Chr1:88287444-88287463 | None:intergenic | 55.0% | |
| GCATCTGTGTCTTCCCAGCA+AGG | - | Chr1:88289127-88289146 | MsG0180005193.01.T01:intron | 55.0% | |
| GGTCTTGGCCATCTCTTGCA+AGG | - | Chr1:88287871-88287890 | MsG0180005193.01.T01:CDS | 55.0% | |
| TTGGCCATCTCTTGCAAGGC+AGG | - | Chr1:88287875-88287894 | MsG0180005193.01.T01:CDS | 55.0% | |
| ! | AGAGCGGTGGTGATGAGAGA+AGG | + | Chr1:88287428-88287447 | None:intergenic | 55.0% |
| ! | GTCTGCGCGCGCATTTGTTT+TGG | - | Chr1:88287969-88287988 | MsG0180005193.01.T01:intron | 55.0% |
| ATGAGATGCAGGCTACCGCG+CGG | + | Chr1:88288580-88288599 | None:intergenic | 60.0% | |
| GAGAGAGAGAGCGAGAGCGG+TGG | + | Chr1:88287441-88287460 | None:intergenic | 65.0% | |
| TGCGCGCGCAGACACACCAG+AGG | + | Chr1:88287962-88287981 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 88287386 | 88289719 | 88287386 | ID=MsG0180005193.01;Name=MsG0180005193.01 |
| Chr1 | mRNA | 88287386 | 88289719 | 88287386 | ID=MsG0180005193.01.T01;Parent=MsG0180005193.01;Name=MsG0180005193.01.T01;_AED=0.34;_eAED=0.34;_QI=131|1|1|1|0.66|0.5|4|294|123 |
| Chr1 | exon | 88287386 | 88287757 | 88287386 | ID=MsG0180005193.01.T01:exon:37171;Parent=MsG0180005193.01.T01 |
| Chr1 | exon | 88287834 | 88287960 | 88287834 | ID=MsG0180005193.01.T01:exon:37170;Parent=MsG0180005193.01.T01 |
| Chr1 | exon | 88289209 | 88289406 | 88289209 | ID=MsG0180005193.01.T01:exon:37169;Parent=MsG0180005193.01.T01 |
| Chr1 | exon | 88289620 | 88289719 | 88289620 | ID=MsG0180005193.01.T01:exon:37168;Parent=MsG0180005193.01.T01 |
| Chr1 | five_prime_UTR | 88289620 | 88289719 | 88289620 | ID=MsG0180005193.01.T01:five_prime_utr;Parent=MsG0180005193.01.T01 |
| Chr1 | five_prime_UTR | 88289376 | 88289406 | 88289376 | ID=MsG0180005193.01.T01:five_prime_utr;Parent=MsG0180005193.01.T01 |
| Chr1 | CDS | 88289209 | 88289375 | 88289209 | ID=MsG0180005193.01.T01:cds;Parent=MsG0180005193.01.T01 |
| Chr1 | CDS | 88287834 | 88287960 | 88287834 | ID=MsG0180005193.01.T01:cds;Parent=MsG0180005193.01.T01 |
| Chr1 | CDS | 88287680 | 88287757 | 88287680 | ID=MsG0180005193.01.T01:cds;Parent=MsG0180005193.01.T01 |
| Chr1 | three_prime_UTR | 88287386 | 88287679 | 88287386 | ID=MsG0180005193.01.T01:three_prime_utr;Parent=MsG0180005193.01.T01 |
| Gene Sequence |
| Protein sequence |
