AlfalfaGEDB | MsG0580026343.01

M. sativa cultivar ZhongmuNo.1 / MsG0580026343.01

KEGG: -
GO: GO:0019904
PFAM: PF00244

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026343.01.T01	XP_003614051.1	99.612	258	1	0	1	258	1	258	0	528

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026343.01.T01	Q9C5W6	84.231	260	36	1	2	256	5	264	2.35E-161	452

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026343.01.T01	G7JWT4	99.612	258	1	0	1	258	1	258	0.0	528

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048738.01	MsG0580026343.01	0.846074	2.729730e-59	4.643322e-56
MsG0080048797.01	MsG0580026343.01	0.834732	2.528910e-56	3.027173e-53
MsG0080049008.01	MsG0580026343.01	0.805269	1.448246e-49	7.628591e-47
MsG0180000028.01	MsG0580026343.01	0.807529	4.835548e-50	2.699714e-47
MsG0180001169.01	MsG0580026343.01	0.848475	5.987301e-60	1.100227e-56
MsG0180001293.01	MsG0580026343.01	0.808313	3.292684e-50	1.876569e-47
MsG0180001588.01	MsG0580026343.01	0.814616	1.407236e-51	9.487930e-49
MsG0180001719.01	MsG0580026343.01	0.819686	1.019671e-52	7.900946e-50
MsG0180002134.01	MsG0580026343.01	0.812938	3.295436e-51	2.123016e-48
MsG0180002135.01	MsG0580026343.01	0.838394	2.951587e-57	3.948031e-54

Showing 1 to 10 of 151 entries

Previous1 2 3 4 5…16Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0480023088.01	MsG0580026343.01	PPI
MsG0580027884.01	MsG0580026343.01	PPI

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026343.01.T01	MTR_5g044160	99.612	258	1	0	1	258	1	258	0.0	528
MsG0580026343.01.T01	MTR_4g083060	89.147	258	27	1	1	258	1	257	4.18e-173	479
MsG0580026343.01.T01	MTR_2g091225	75.502	249	60	1	1	249	1	248	5.42e-142	400
MsG0580026343.01.T01	MTR_8g086270	76.735	245	57	0	1	245	1	245	4.98e-141	397
MsG0580026343.01.T01	MTR_2g076960	74.897	243	61	0	7	249	8	250	5.95e-138	390
MsG0580026343.01.T01	MTR_2g015980	74.897	243	59	2	11	253	9	249	7.32e-135	382
MsG0580026343.01.T01	MTR_2g091225	76.000	225	53	1	25	249	2	225	4.75e-129	366
MsG0580026343.01.T01	MTR_3g099380	70.817	257	72	3	2	256	3	258	3.38e-127	362
MsG0580026343.01.T01	MTR_5g064580	68.627	255	75	2	2	254	3	254	1.31e-123	353
MsG0580026343.01.T01	MTR_3g100620	66.245	237	77	1	7	240	11	247	9.21e-113	325

Showing 1 to 10 of 13 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026343.01.T01	AT1G26480	84.231	260	36	1	2	256	5	264	2.40e-162	452
MsG0580026343.01.T01	AT1G34760	79.835	243	48	1	4	246	2	243	3.07e-143	403
MsG0580026343.01.T01	AT1G34760	79.835	243	48	1	4	246	2	243	4.92e-143	402
MsG0580026343.01.T01	AT2G42590	72.285	267	69	2	1	262	1	267	4.89e-141	398
MsG0580026343.01.T01	AT2G42590	74.219	256	65	1	1	255	1	256	2.03e-140	396
MsG0580026343.01.T01	AT2G42590	73.725	255	67	0	1	255	1	255	4.29e-139	393
MsG0580026343.01.T01	AT1G22300	74.400	250	64	0	4	253	2	251	9.34e-135	381
MsG0580026343.01.T01	AT1G22300	74.400	250	64	0	4	253	2	251	9.76e-135	381
MsG0580026343.01.T01	AT1G22300	76.250	240	57	0	4	243	2	241	1.65e-133	378
MsG0580026343.01.T01	AT1G35160	72.222	252	68	1	7	256	11	262	3.60e-127	363

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

Find 69 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTGGCCAAGTAAACT+TGG	0.423724	5:-35065906	None:intergenic
AACATTAGCTTCTGCCGAGG+TGG	0.575120	5:-35067159	None:intergenic
AACTTACAGGGCCTGCCATT+TGG	0.370260	5:+35068289	MsG0580026343.01.T01:intron
AAGAAGAAATGGGATGGGAT+GGG	0.560246	5:-35065793	None:intergenic
AAGAAGAAGAAGAAATGGGA+TGG	0.564884	5:-35065799	None:intergenic
AAGATCAGTGTTTGCAGTGG+CGG	0.557206	5:-35068111	None:intergenic
AAGCTTGGCCAAGTAAACTT+GGG	0.611139	5:-35065905	None:intergenic
AATCAGAGGTCCAAAGAGTC+AGG	0.501037	5:-35068409	None:intergenic
ACACATACCTCAGGCTCAGC+GGG	0.513323	5:-35068973	None:intergenic
ACCAATCTTACACATACCTC+AGG	0.571060	5:-35068982	None:intergenic

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACATAGAATCTGTATGAC+TGG	+	Chr5:35067358-35067377	MsG0580026343.01.T01:intron	30.0%
AAAGGTTAATACTCTCTTAC+AGG	+	Chr5:35068919-35068938	MsG0580026343.01.T01:intron	30.0%
AAATGAAGCATAAGGAAATC+AGG	-	Chr5:35067888-35067907	None:intergenic	30.0%
AATGAAGCATAAGGAAATCA+GGG	-	Chr5:35067887-35067906	None:intergenic	30.0%
ACCAAGTGAGAAATAAAAAC+AGG	-	Chr5:35066603-35066622	None:intergenic	30.0%
ACCTATACTTTCAATGTGTT+TGG	-	Chr5:35068581-35068600	None:intergenic	30.0%
AGTTAATAAACTGGCCAATT+TGG	-	Chr5:35066580-35066599	None:intergenic	30.0%
ATCAAACAGTGAAGAAATCA+TGG	+	Chr5:35067699-35067718	MsG0580026343.01.T01:intron	30.0%
ATGGTAAGGACTACAAAATA+TGG	+	Chr5:35067718-35067737	MsG0580026343.01.T01:intron	30.0%
ATTAAAAATCTCGCATCTCA+GGG	-	Chr5:35068546-35068565	None:intergenic	30.0%

Showing 1 to 10 of 215 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	35065795	35069071	35065795	ID=MsG0580026343.01;Name=MsG0580026343.01
Chr5	mRNA	35065795	35069071	35065795	ID=MsG0580026343.01.T01;Parent=MsG0580026343.01;Name=MsG0580026343.01.T01;_AED=0.39;_eAED=0.44;_QI=85\|1\|0.83\|1\|0.8\|0.66\|6\|0\|285
Chr5	exon	35065795	35065952	35065795	ID=MsG0580026343.01.T01:exon:14133;Parent=MsG0580026343.01.T01
Chr5	exon	35066889	35067195	35066889	ID=MsG0580026343.01.T01:exon:14134;Parent=MsG0580026343.01.T01
Chr5	exon	35067915	35068002	35067915	ID=MsG0580026343.01.T01:exon:14135;Parent=MsG0580026343.01.T01
Chr5	exon	35068104	35068213	35068104	ID=MsG0580026343.01.T01:exon:14136;Parent=MsG0580026343.01.T01
Chr5	exon	35068298	35068446	35068298	ID=MsG0580026343.01.T01:exon:14137;Parent=MsG0580026343.01.T01
Chr5	exon	35068941	35069071	35068941	ID=MsG0580026343.01.T01:exon:14138;Parent=MsG0580026343.01.T01
Chr5	five_prime_UTR	35065795	35065879	35065795	ID=MsG0580026343.01.T01:five_prime_utr;Parent=MsG0580026343.01.T01
Chr5	CDS	35065880	35065952	35065880	ID=MsG0580026343.01.T01:cds;Parent=MsG0580026343.01.T01
Chr5	CDS	35066889	35067195	35066889	ID=MsG0580026343.01.T01:cds;Parent=MsG0580026343.01.T01
Chr5	CDS	35067915	35068002	35067915	ID=MsG0580026343.01.T01:cds;Parent=MsG0580026343.01.T01
Chr5	CDS	35068104	35068213	35068104	ID=MsG0580026343.01.T01:cds;Parent=MsG0580026343.01.T01
Chr5	CDS	35068298	35068446	35068298	ID=MsG0580026343.01.T01:cds;Parent=MsG0580026343.01.T01
Chr5	CDS	35068941	35069071	35068941	ID=MsG0580026343.01.T01:cds;Parent=MsG0580026343.01.T01

Gene Sequence

>MsG0580026343.01.T01

ATGTCCGCTGAGAAAGAGAGAGAGACCCAAGTTTACTTGGCCAAGCTTTCCGAACAAGCTGAAAGATATGAAGAAATGGTTGAATGTATGAAGAAAGTGGCAAAACTTGATGTTGAACTAACTGTGGAAGAGAGGAACCTCCTCTCTGTTGGATATAAAAACGTCATTGGTGCACGAAGAGCTTCATGGCGCATTATGTCTTCAATTGAGCAGAAGGAGGAGTCTAAGGGTAATGAACACAATGTTAAAATGATCAAGAGTTACTGCCAAAAGGTTGAGGAGGAACTCTCCAAAATCTGTGGTGACATTCTGACAATTATTGACCAGCATCTGGTTCCTGCTTCCACCTCGGCAGAAGCTAATGTTTTCTATCATAAGATGAAAGGTGATTATTTCCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGAAAAGAGGCTGCTGAGCAGTCACTGAAAGGATACGAGGCTGCTTCCGCCACTGCAAACACTGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCTGTCTTTTATTACGAGATTATGAACTCTCCTGAAAGGGCCTGCCATTTGGCCAAACAAGCTTTTGATGAGGCGATTGCAGAGTTGGATACCTTGAGTGAAGAGTCATACAAGGACAGCACTTTGATCATGCAGTTGTTGAGAGACAACCTGACTCTTTGGACCTCTGATTTGCCAGAGGATGGAGGTGAGGAGACCATAAAAGCTGAAGAAGCCAAACCCGCTGAGCCTGAGGTATGTGTAAGATTGGTTTCGGCTATATTTACATTTGTTTGTTTTCTGAAGTATGTATGCAAAGCCATAGTTATAGATTTATAG

Protein sequence

>MsG0580026343.01.T01

MSAEKERETQVYLAKLSEQAERYEEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKMIKSYCQKVEEELSKICGDILTIIDQHLVPASTSAEANVFYHKMKGDYFRYLAEFKTDQERKEAAEQSLKGYEAASATANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEETIKAEEAKPAEPEVCVRLVSAIFTFVCFLKYVCKAIVIDL*