Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030721.01.T02 | XP_013450932.1 | 63.054 | 203 | 32 | 5 | 2 | 161 | 76 | 278 | 3.47E-68 | 218 |
| MsG0680030721.01.T01 | XP_013450932.1 | 63.054 | 203 | 32 | 5 | 2 | 161 | 76 | 278 | 3.47E-68 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030721.01.T01 | P42054 | 49.505 | 202 | 59 | 5 | 2 | 161 | 76 | 276 | 1.34E-49 | 163 |
| MsG0680030721.01.T02 | P42054 | 49.505 | 202 | 59 | 5 | 2 | 161 | 76 | 276 | 1.34E-49 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030721.01.T01 | I3S1P8 | 63.054 | 203 | 32 | 5 | 2 | 161 | 76 | 278 | 1.66e-68 | 218 |
| MsG0680030721.01.T02 | I3S1P8 | 63.054 | 203 | 32 | 5 | 2 | 161 | 76 | 278 | 1.66e-68 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048784.01 | MsG0680030721.01 | 0.803760 | 2.988705e-49 | 1.514397e-46 |
| MsG0180000139.01 | MsG0680030721.01 | 0.834743 | 2.512412e-56 | 3.008463e-53 |
| MsG0180001612.01 | MsG0680030721.01 | 0.802856 | 4.599898e-49 | 2.277384e-46 |
| MsG0180003117.01 | MsG0680030721.01 | 0.804328 | 2.276960e-49 | 1.170691e-46 |
| MsG0180003493.01 | MsG0680030721.01 | 0.837970 | 3.795095e-57 | 5.011499e-54 |
| MsG0180003651.01 | MsG0680030721.01 | 0.852739 | 3.788875e-61 | 7.994529e-58 |
| MsG0180003793.01 | MsG0680030721.01 | 0.815519 | 8.870864e-52 | 6.129757e-49 |
| MsG0180004129.01 | MsG0680030721.01 | 0.803190 | 3.924151e-49 | 1.959467e-46 |
| MsG0180004130.01 | MsG0680030721.01 | 0.814081 | 1.846927e-51 | 1.227325e-48 |
| MsG0180004463.01 | MsG0680030721.01 | 0.806882 | 6.629298e-50 | 3.639448e-47 |
| MsG0180004482.01 | MsG0680030721.01 | 0.803569 | 3.274978e-49 | 1.651393e-46 |
| MsG0180004854.01 | MsG0680030721.01 | 0.810423 | 1.161416e-50 | 6.997710e-48 |
| MsG0180005659.01 | MsG0680030721.01 | 0.875459 | 3.031687e-68 | 1.416351e-64 |
| MsG0180005664.01 | MsG0680030721.01 | 0.801518 | 8.668760e-49 | 4.148308e-46 |
| MsG0180005746.01 | MsG0680030721.01 | 0.821058 | 4.941173e-53 | 3.978055e-50 |
| MsG0280011387.01 | MsG0680030721.01 | 0.817793 | 2.742418e-52 | 2.016751e-49 |
| MsG0280011416.01 | MsG0680030721.01 | 0.812681 | 3.751377e-51 | 2.400487e-48 |
| MsG0680030721.01 | MsG0680030865.01 | 0.827581 | 1.445991e-54 | 1.401639e-51 |
| MsG0680030721.01 | MsG0680031628.01 | 0.811613 | 6.413958e-51 | 3.988490e-48 |
| MsG0680030721.01 | MsG0780036240.01 | 0.815656 | 8.267906e-52 | 5.734657e-49 |
| MsG0680030721.01 | MsG0780036477.01 | 0.805727 | 1.161105e-49 | 6.189033e-47 |
| MsG0680030721.01 | MsG0780038400.01 | 0.842170 | 3.045290e-58 | 4.578120e-55 |
| MsG0680030721.01 | MsG0780040057.01 | 0.812272 | 4.609406e-51 | 2.917763e-48 |
| MsG0680030721.01 | MsG0780041223.01 | 0.814481 | 1.507455e-51 | 1.012693e-48 |
| MsG0680030721.01 | MsG0880042581.01 | 0.820545 | 6.483271e-53 | 5.145049e-50 |
| MsG0680030721.01 | MsG0880042836.01 | 0.801801 | 7.587250e-49 | 3.656753e-46 |
| MsG0680030721.01 | MsG0880045294.01 | 0.824607 | 7.365350e-54 | 6.556716e-51 |
| MsG0680030721.01 | MsG0880046237.01 | 0.803030 | 4.233682e-49 | 2.105352e-46 |
| MsG0680030721.01 | MsG0880046575.01 | 0.808893 | 2.475728e-50 | 1.432479e-47 |
| MsG0480018477.01 | MsG0680030721.01 | 0.800517 | 1.388680e-48 | 6.479028e-46 |
| MsG0480021006.01 | MsG0680030721.01 | 0.805480 | 1.307826e-49 | 6.926638e-47 |
| MsG0480021322.01 | MsG0680030721.01 | 0.810099 | 1.363946e-50 | 8.149015e-48 |
| MsG0480021393.01 | MsG0680030721.01 | 0.814587 | 1.428353e-51 | 9.622722e-49 |
| MsG0480021823.01 | MsG0680030721.01 | 0.834664 | 2.630564e-56 | 3.142587e-53 |
| MsG0480022045.01 | MsG0680030721.01 | 0.800818 | 1.205729e-48 | 5.668420e-46 |
| MsG0480022549.01 | MsG0680030721.01 | 0.837271 | 5.736142e-57 | 7.412198e-54 |
| MsG0480022877.01 | MsG0680030721.01 | 0.817947 | 2.531841e-52 | 1.869644e-49 |
| MsG0480023463.01 | MsG0680030721.01 | 0.815641 | 8.332251e-52 | 5.776982e-49 |
| MsG0480023968.01 | MsG0680030721.01 | 0.833928 | 4.023034e-56 | 4.702120e-53 |
| MsG0580024382.01 | MsG0680030721.01 | 0.801322 | 9.512250e-49 | 4.529398e-46 |
| MsG0380016126.01 | MsG0680030721.01 | 0.808001 | 3.838555e-50 | 2.169674e-47 |
| MsG0380017836.01 | MsG0680030721.01 | 0.806855 | 6.717330e-50 | 3.685271e-47 |
| MsG0380017857.01 | MsG0680030721.01 | 0.846614 | 1.944046e-59 | 3.365313e-56 |
| MsG0580029370.01 | MsG0680030721.01 | 0.804707 | 1.898018e-49 | 9.854552e-47 |
| MsG0280006993.01 | MsG0680030721.01 | 0.836240 | 1.050576e-56 | 1.316334e-53 |
| MsG0280007452.01 | MsG0680030721.01 | 0.802199 | 6.282178e-49 | 3.058526e-46 |
| MsG0280008283.01 | MsG0680030721.01 | 0.865098 | 7.554098e-65 | 2.428182e-61 |
| MsG0280009141.01 | MsG0680030721.01 | 0.821478 | 3.952669e-53 | 3.219234e-50 |
| MsG0280009142.01 | MsG0680030721.01 | 0.800967 | 1.124335e-48 | 5.306158e-46 |
| MsG0280009375.01 | MsG0680030721.01 | 0.835703 | 1.438310e-56 | 1.772943e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030721.01.T02 | MTR_6g011390 | 63.054 | 203 | 32 | 5 | 2 | 161 | 76 | 278 | 4.20e-72 | 218 |
| MsG0680030721.01.T02 | MTR_7g009330 | 44.776 | 201 | 70 | 4 | 2 | 161 | 77 | 277 | 2.50e-47 | 155 |
| MsG0680030721.01.T02 | MTR_8g469150 | 59.406 | 101 | 41 | 0 | 61 | 161 | 176 | 276 | 1.29e-40 | 137 |
| MsG0680030721.01.T02 | MTR_8g469150 | 58.696 | 92 | 38 | 0 | 61 | 152 | 176 | 267 | 5.41e-35 | 123 |
| MsG0680030721.01.T02 | MTR_5g015580 | 50.495 | 101 | 50 | 0 | 61 | 161 | 176 | 276 | 1.16e-29 | 109 |
| MsG0680030721.01.T02 | MTR_1g018205 | 36.691 | 139 | 76 | 3 | 31 | 161 | 143 | 277 | 1.19e-21 | 88.6 |
| MsG0680030721.01.T02 | MTR_4g128300 | 43.564 | 101 | 56 | 1 | 62 | 161 | 179 | 279 | 8.39e-20 | 83.6 |
| MsG0680030721.01.T02 | MTR_4g107840 | 38.776 | 98 | 59 | 1 | 65 | 161 | 147 | 244 | 3.95e-17 | 75.9 |
| MsG0680030721.01.T01 | MTR_6g011390 | 63.054 | 203 | 32 | 5 | 2 | 161 | 76 | 278 | 4.20e-72 | 218 |
| MsG0680030721.01.T01 | MTR_7g009330 | 44.776 | 201 | 70 | 4 | 2 | 161 | 77 | 277 | 2.50e-47 | 155 |
| MsG0680030721.01.T01 | MTR_8g469150 | 59.406 | 101 | 41 | 0 | 61 | 161 | 176 | 276 | 1.29e-40 | 137 |
| MsG0680030721.01.T01 | MTR_8g469150 | 58.696 | 92 | 38 | 0 | 61 | 152 | 176 | 267 | 5.41e-35 | 123 |
| MsG0680030721.01.T01 | MTR_5g015580 | 50.495 | 101 | 50 | 0 | 61 | 161 | 176 | 276 | 1.16e-29 | 109 |
| MsG0680030721.01.T01 | MTR_1g018205 | 36.691 | 139 | 76 | 3 | 31 | 161 | 143 | 277 | 1.19e-21 | 88.6 |
| MsG0680030721.01.T01 | MTR_4g128300 | 43.564 | 101 | 56 | 1 | 62 | 161 | 179 | 279 | 8.39e-20 | 83.6 |
| MsG0680030721.01.T01 | MTR_4g107840 | 38.776 | 98 | 59 | 1 | 65 | 161 | 147 | 244 | 3.95e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680030721.01.T02 | AT3G01280 | 68.317 | 101 | 32 | 0 | 61 | 161 | 176 | 276 | 5.81e-48 | 156 |
| MsG0680030721.01.T02 | AT5G15090 | 69.307 | 101 | 29 | 1 | 61 | 161 | 176 | 274 | 4.39e-46 | 152 |
| MsG0680030721.01.T02 | AT5G15090 | 69.307 | 101 | 29 | 1 | 61 | 161 | 176 | 274 | 4.39e-46 | 152 |
| MsG0680030721.01.T02 | AT5G57490 | 48.000 | 100 | 50 | 1 | 62 | 161 | 177 | 274 | 5.82e-27 | 102 |
| MsG0680030721.01.T02 | AT5G67500 | 47.525 | 101 | 53 | 0 | 61 | 161 | 176 | 276 | 8.73e-26 | 99.4 |
| MsG0680030721.01.T02 | AT5G67500 | 47.525 | 101 | 53 | 0 | 61 | 161 | 203 | 303 | 1.22e-25 | 99.8 |
| MsG0680030721.01.T02 | AT3G49920 | 43.000 | 100 | 57 | 0 | 62 | 161 | 127 | 226 | 2.33e-23 | 92.0 |
| MsG0680030721.01.T02 | AT5G67500 | 45.652 | 92 | 50 | 0 | 61 | 152 | 176 | 267 | 1.20e-20 | 86.3 |
| MsG0680030721.01.T02 | AT5G37610 | 38.614 | 101 | 56 | 3 | 61 | 159 | 67 | 163 | 4.40e-12 | 61.2 |
| MsG0680030721.01.T01 | AT3G01280 | 68.317 | 101 | 32 | 0 | 61 | 161 | 176 | 276 | 5.81e-48 | 156 |
| MsG0680030721.01.T01 | AT5G15090 | 69.307 | 101 | 29 | 1 | 61 | 161 | 176 | 274 | 4.39e-46 | 152 |
| MsG0680030721.01.T01 | AT5G15090 | 69.307 | 101 | 29 | 1 | 61 | 161 | 176 | 274 | 4.39e-46 | 152 |
| MsG0680030721.01.T01 | AT5G57490 | 48.000 | 100 | 50 | 1 | 62 | 161 | 177 | 274 | 5.82e-27 | 102 |
| MsG0680030721.01.T01 | AT5G67500 | 47.525 | 101 | 53 | 0 | 61 | 161 | 176 | 276 | 8.73e-26 | 99.4 |
| MsG0680030721.01.T01 | AT5G67500 | 47.525 | 101 | 53 | 0 | 61 | 161 | 203 | 303 | 1.22e-25 | 99.8 |
| MsG0680030721.01.T01 | AT3G49920 | 43.000 | 100 | 57 | 0 | 62 | 161 | 127 | 226 | 2.33e-23 | 92.0 |
| MsG0680030721.01.T01 | AT5G67500 | 45.652 | 92 | 50 | 0 | 61 | 152 | 176 | 267 | 1.20e-20 | 86.3 |
| MsG0680030721.01.T01 | AT5G37610 | 38.614 | 101 | 56 | 3 | 61 | 159 | 67 | 163 | 4.40e-12 | 61.2 |
Find 82 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCATTCTTCACCATTTC+TGG | 0.094067 | 6:-7943720 | MsG0680030721.01.T01:CDS |
| TGGGGCATTATTCAATAATT+TGG | 0.105065 | 6:-7943329 | MsG0680030721.01.T01:intron |
| AATAGGGGTCATTTAAAATT+TGG | 0.147087 | 6:-7942996 | MsG0680030721.01.T02:three_prime_UTR |
| ACCTAAGCACCATAAATTTA+AGG | 0.154632 | 6:-7943105 | MsG0680030721.01.T02:three_prime_UTR |
| ACAGTTAAGCCTTAAATTTA+TGG | 0.176940 | 6:+7943096 | None:intergenic |
| TTTACCATTGTCAATGATAT+TGG | 0.180058 | 6:+7942834 | None:intergenic |
| ATATTTAAGCCTTGATAAAA+TGG | 0.202354 | 6:+7942694 | None:intergenic |
| GAAATGGTGAAGAATGATTT+TGG | 0.230254 | 6:+7943723 | None:intergenic |
| TTTGAGGTTGGTTCTATTAT+TGG | 0.245423 | 6:-7943554 | MsG0680030721.01.T01:three_prime_UTR |
| TGGTTGGTCGTGGATGATTT+TGG | 0.264291 | 6:-7942749 | MsG0680030721.01.T02:three_prime_UTR |
| TGCACTCTTCTCAATGGCCT+TGG | 0.292656 | 6:+7943686 | None:intergenic |
| TGTGTTTAGTCTTTGCAAAT+AGG | 0.304302 | 6:-7943013 | MsG0680030721.01.T02:three_prime_UTR |
| CATGGTAGTACGAAGCATTC+AGG | 0.324216 | 6:+7943919 | None:intergenic |
| GGGGCATTATTCAATAATTT+GGG | 0.329501 | 6:-7943328 | MsG0680030721.01.T01:intron |
| TCAAGATGTAGCACCAGTTT+GGG | 0.335710 | 6:-7943348 | MsG0680030721.01.T01:intron |
| CAGCTGAGTTGGCAAGGGTT+TGG | 0.336598 | 6:-7942555 | MsG0680030721.01.T02:three_prime_UTR |
| TTACCATTGTCAATGATATT+GGG | 0.337459 | 6:+7942835 | None:intergenic |
| TCAAAACGCGCCTATATTAC+AGG | 0.338767 | 6:+7942661 | None:intergenic |
| GTCAAGATGTAGCACCAGTT+TGG | 0.359734 | 6:-7943349 | MsG0680030721.01.T01:intron |
| GACTCTTGGATCCATATTCA+TGG | 0.373377 | 6:+7943369 | None:intergenic |
| GTGTTTAGTCTTTGCAAATA+GGG | 0.374013 | 6:-7943012 | MsG0680030721.01.T02:three_prime_UTR |
| TCATCATAGGTAAATTAATA+TGG | 0.383102 | 6:-7943277 | MsG0680030721.01.T02:three_prime_UTR |
| GTGGTTGTGCCCCATGAATA+TGG | 0.407405 | 6:-7943380 | MsG0680030721.01.T01:three_prime_UTR |
| TGCAAGAATTGGAATAGCTT+TGG | 0.416994 | 6:-7943667 | MsG0680030721.01.T01:CDS |
| GGCCCACTGTTCAGCTGAGT+TGG | 0.417443 | 6:-7942566 | MsG0680030721.01.T02:three_prime_UTR |
| CCGTGCATCTGCACGGGTAC+TGG | 0.423789 | 6:-7942769 | MsG0680030721.01.T02:three_prime_UTR |
| ATTGAGAAGAGTGCAAGAAT+TGG | 0.429625 | 6:-7943678 | MsG0680030721.01.T01:CDS |
| GGTGTCCACCTCACCAGAAA+TGG | 0.430124 | 6:+7943707 | None:intergenic |
| GCCTTAAATTTATGGTGCTT+AGG | 0.440688 | 6:+7943104 | None:intergenic |
| AATTCTTGCACTCTTCTCAA+TGG | 0.442907 | 6:+7943680 | None:intergenic |
| ACTACATTTGAATCATAATC+AGG | 0.458351 | 6:+7943187 | None:intergenic |
| TCGTAACATTTGAAAAGATA+GGG | 0.460519 | 6:+7943063 | None:intergenic |
| TTTGTTTGAAAATGGTCCCT+GGG | 0.463148 | 6:-7942587 | MsG0680030721.01.T02:three_prime_UTR |
| CTCAGCTGAACAGTGGGCCC+AGG | 0.464832 | 6:+7942570 | None:intergenic |
| ACTGTTCAGCTGAGTTGGCA+AGG | 0.466271 | 6:-7942561 | MsG0680030721.01.T02:three_prime_UTR |
| TATTGAATAATGCCCCAAAC+TGG | 0.467139 | 6:+7943335 | None:intergenic |
| TTTGCTCAAAATTCCTCTCA+AGG | 0.480557 | 6:+7943636 | None:intergenic |
| CTGTTCAGCTGAGTTGGCAA+GGG | 0.481436 | 6:-7942560 | MsG0680030721.01.T02:three_prime_UTR |
| TAGTAATGGGATTGACTACA+TGG | 0.484241 | 6:+7943901 | None:intergenic |
| CGGGTATGTTACTAGTATGT+TGG | 0.484362 | 6:+7942789 | None:intergenic |
| CCCATTACTAAAACAGCTGT+TGG | 0.486039 | 6:-7943888 | MsG0680030721.01.T01:CDS |
| CGTAACATTTGAAAAGATAG+GGG | 0.487188 | 6:+7943064 | None:intergenic |
| TGGTGCTACATCTTGACTCT+TGG | 0.491042 | 6:+7943355 | None:intergenic |
| ATCGTAACATTTGAAAAGAT+AGG | 0.500610 | 6:+7943062 | None:intergenic |
| ACTCTTGGATCCATATTCAT+GGG | 0.506124 | 6:+7943370 | None:intergenic |
| CTTCACCATTTCTGGTGAGG+TGG | 0.514326 | 6:-7943712 | MsG0680030721.01.T01:CDS |
| ATGGTAGTACGAAGCATTCA+GGG | 0.530476 | 6:+7943920 | None:intergenic |
| TGCCAACTCAGCTGAACAGT+GGG | 0.530622 | 6:+7942564 | None:intergenic |
| TTTGCCACGTGGCGCTGACG+TGG | 0.535371 | 6:-7942504 | MsG0680030721.01.T02:three_prime_UTR |
| CCAGTACCCGTGCAGATGCA+CGG | 0.548989 | 6:+7942769 | None:intergenic |
| CAGTACCCGTGCAGATGCAC+GGG | 0.550114 | 6:+7942770 | None:intergenic |
| ATTCTTCACCATTTCTGGTG+AGG | 0.552957 | 6:-7943715 | MsG0680030721.01.T01:CDS |
| AACATACCCGTGCATCTGCA+CGG | 0.557208 | 6:-7942776 | MsG0680030721.01.T02:three_prime_UTR |
| TGTTTAGTCTTTGCAAATAG+GGG | 0.558534 | 6:-7943011 | MsG0680030721.01.T02:three_prime_UTR |
| AAAGAAAACACACTCACACT+TGG | 0.565898 | 6:-7943837 | MsG0680030721.01.T01:CDS |
| TCAGCTGAACAGTGGGCCCA+GGG | 0.570299 | 6:+7942571 | None:intergenic |
| TTTGGCTCTCAAACCTTGAG+AGG | 0.571180 | 6:-7943649 | MsG0680030721.01.T01:exon |
| AAGCTTCGATTCAACAACTT+CGG | 0.572667 | 6:-7943780 | MsG0680030721.01.T01:CDS |
| GCACGGGTACTGGTTGGTCG+TGG | 0.575404 | 6:-7942759 | MsG0680030721.01.T02:three_prime_UTR |
| TCGATTCAACAACTTCGGAC+TGG | 0.577522 | 6:-7943775 | MsG0680030721.01.T01:CDS |
| TAAAACAGCTGTTGGAGCTG+AGG | 0.577802 | 6:-7943880 | MsG0680030721.01.T01:CDS |
| AACAACTTCGGACTGGCAAG+CGG | 0.577860 | 6:-7943768 | MsG0680030721.01.T01:CDS |
| TTGGCAAGGGTTTGGCCACG+TGG | 0.581127 | 6:-7942547 | MsG0680030721.01.T02:three_prime_UTR |
| GCGGTCTCATCCAGCACGAG+TGG | 0.581180 | 6:-7943749 | MsG0680030721.01.T01:CDS |
| TTCTGGTGAGGTGGACACCA+AGG | 0.584182 | 6:-7943703 | MsG0680030721.01.T01:CDS |
| GTTGAGGTAGTCATTAGCAA+AGG | 0.591761 | 6:-7943610 | MsG0680030721.01.T01:three_prime_UTR |
| GCATCTGCACGGGTACTGGT+TGG | 0.594354 | 6:-7942765 | MsG0680030721.01.T02:three_prime_UTR |
| ACATACCCGTGCATCTGCAC+GGG | 0.596752 | 6:-7942775 | MsG0680030721.01.T02:three_prime_UTR |
| TAACCCAATATCATTGACAA+TGG | 0.597238 | 6:-7942838 | MsG0680030721.01.T02:three_prime_UTR |
| TAGCCACCATTGCATGACAC+TGG | 0.604924 | 6:+7943250 | None:intergenic |
| TTGCCAACTCAGCTGAACAG+TGG | 0.607095 | 6:+7942563 | None:intergenic |
| CATCCAGTGTCATGCAATGG+TGG | 0.611538 | 6:-7943253 | MsG0680030721.01.T02:three_prime_UTR |
| CTCTTGGATCCATATTCATG+GGG | 0.622127 | 6:+7943371 | None:intergenic |
| CAAAACGCGCCTATATTACA+GGG | 0.622265 | 6:+7942662 | None:intergenic |
| ATGCATTAATATCACAAAGG+AGG | 0.629994 | 6:+7943213 | None:intergenic |
| CACGCCACGTCAGCGCCACG+TGG | 0.646336 | 6:+7942500 | None:intergenic |
| GTAACATTTGAAAAGATAGG+GGG | 0.673598 | 6:+7943065 | None:intergenic |
| TTTGTTATTATTGTGTTACG+TGG | 0.674331 | 6:-7943399 | MsG0680030721.01.T01:three_prime_UTR |
| CAAGATGTAGCACCAGTTTG+GGG | 0.680110 | 6:-7943347 | MsG0680030721.01.T01:intron |
| CACAGTCAGCAACTGCCACG+TGG | 0.686869 | 6:+7942532 | None:intergenic |
| TAAATGCATTAATATCACAA+AGG | 0.688325 | 6:+7943210 | None:intergenic |
| GGTCATCCAGTGTCATGCAA+TGG | 0.695116 | 6:-7943256 | MsG0680030721.01.T02:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTGATTAAAATTTTTAT+GGG | - | Chr6:7943946-7943965 | MsG0680030721.01.T01:intron | 10.0% |
| !!! | AAATTTTTTTTGTTTGAAAA+TGG | - | Chr6:7945331-7945350 | MsG0680030721.01.T01:CDS | 10.0% |
| !! | ATTAAATTTAGATATTCTAC+AGG | + | Chr6:7943840-7943859 | None:intergenic | 15.0% |
| !! | TTAAATTTAGATATTCTACA+GGG | + | Chr6:7943839-7943858 | None:intergenic | 15.0% |
| !!! | AACTGATTAAAATTTTTATG+GGG | - | Chr6:7943947-7943966 | MsG0680030721.01.T01:intron | 15.0% |
| !!! | CAAACAAAAAAAATTTTACA+GGG | + | Chr6:7945327-7945346 | None:intergenic | 15.0% |
| !!! | GAAACTGATTAAAATTTTTA+TGG | - | Chr6:7943945-7943964 | MsG0680030721.01.T01:intron | 15.0% |
| !!! | TCAAACAAAAAAAATTTTAC+AGG | + | Chr6:7945328-7945347 | None:intergenic | 15.0% |
| !! | AAAAAAAAACACTGATAAAC+AGG | + | Chr6:7943553-7943572 | None:intergenic | 20.0% |
| !! | ATATTTAAGCCTTGATAAAA+TGG | + | Chr6:7945235-7945254 | None:intergenic | 20.0% |
| !! | CAAAATCACTTTATTCTAAT+CGG | + | Chr6:7943881-7943900 | None:intergenic | 20.0% |
| !! | CTATAAAAAATTCTCATCAT+AGG | - | Chr6:7944636-7944655 | MsG0680030721.01.T01:intron | 20.0% |
| !! | TAAATGCATTAATATCACAA+AGG | + | Chr6:7944719-7944738 | None:intergenic | 20.0% |
| !! | TCATCATAGGTAAATTAATA+TGG | - | Chr6:7944649-7944668 | MsG0680030721.01.T01:intron | 20.0% |
| !! | TTGTTTATCAAATTAGTGAA+TGG | + | Chr6:7942647-7942666 | None:intergenic | 20.0% |
| !!! | AAAATGAAATTCACTTTTGA+AGG | + | Chr6:7943789-7943808 | None:intergenic | 20.0% |
| !!! | ATTCAAACTTTTTTTTTGAC+AGG | + | Chr6:7945299-7945318 | None:intergenic | 20.0% |
| !!! | TTAAAATTTTTATGGGGATA+TGG | - | Chr6:7943953-7943972 | MsG0680030721.01.T01:intron | 20.0% |
| !!! | TTCAAACTTTTTTTTTGACA+GGG | + | Chr6:7945298-7945317 | None:intergenic | 20.0% |
| !!! | TTTTGAATTGACAAAAAACA+AGG | + | Chr6:7944973-7944992 | None:intergenic | 20.0% |
| ! | ACAGTTAAGCCTTAAATTTA+TGG | + | Chr6:7944833-7944852 | None:intergenic | 25.0% |
| ! | ACTACATTTGAATCATAATC+AGG | + | Chr6:7944742-7944761 | None:intergenic | 25.0% |
| ! | ATCGTAACATTTGAAAAGAT+AGG | + | Chr6:7944867-7944886 | None:intergenic | 25.0% |
| ! | CATCATAAAATTTCTTGCTT+AGG | - | Chr6:7943913-7943932 | MsG0680030721.01.T01:CDS | 25.0% |
| ! | TCGTAACATTTGAAAAGATA+GGG | + | Chr6:7944866-7944885 | None:intergenic | 25.0% |
| ! | TCTACTTACTTAAATAGCAT+TGG | + | Chr6:7943178-7943197 | None:intergenic | 25.0% |
| ! | TTACCATTGTCAATGATATT+GGG | + | Chr6:7945094-7945113 | None:intergenic | 25.0% |
| ! | TTCGTACAATTACAAATGAA+TGG | - | Chr6:7943339-7943358 | MsG0680030721.01.T01:intron | 25.0% |
| ! | TTTACCATTGTCAATGATAT+TGG | + | Chr6:7945095-7945114 | None:intergenic | 25.0% |
| !! | AATAGGGGTCATTTAAAATT+TGG | - | Chr6:7944930-7944949 | MsG0680030721.01.T01:intron | 25.0% |
| !! | TTCAAATGTAGTAGTCTTTT+TGG | - | Chr6:7944750-7944769 | MsG0680030721.01.T01:intron | 25.0% |
| !! | TTTTCTATCAAGACTGAATT+TGG | - | Chr6:7944344-7944363 | MsG0680030721.01.T01:intron | 25.0% |
| !!! | AATTTTGAGCAAATTTGTTG+AGG | - | Chr6:7944300-7944319 | MsG0680030721.01.T01:intron | 25.0% |
| !!! | ATCATCATTTTTTACCTTGA+AGG | - | Chr6:7943602-7943621 | MsG0680030721.01.T01:three_prime_UTR | 25.0% |
| !!! | CTAAAAGTGAAGTTTTATGA+AGG | + | Chr6:7943577-7943596 | None:intergenic | 25.0% |
| !!! | TTTGTTATTATTGTGTTACG+TGG | - | Chr6:7944527-7944546 | MsG0680030721.01.T01:intron | 25.0% |
| AAATCATTCTTCACCATTTC+TGG | - | Chr6:7944206-7944225 | MsG0680030721.01.T01:intron | 30.0% | |
| AACAAATTACCGTATGAAAC+AGG | - | Chr6:7942662-7942681 | MsG0680030721.01.T02:three_prime_UTR | 30.0% | |
| ACCTAAGCACCATAAATTTA+AGG | - | Chr6:7944821-7944840 | MsG0680030721.01.T01:intron | 30.0% | |
| ATGCATTAATATCACAAAGG+AGG | + | Chr6:7944716-7944735 | None:intergenic | 30.0% | |
| CGTAACATTTGAAAAGATAG+GGG | + | Chr6:7944865-7944884 | None:intergenic | 30.0% | |
| GTAACATTTGAAAAGATAGG+GGG | + | Chr6:7944864-7944883 | None:intergenic | 30.0% | |
| TAACCCAATATCATTGACAA+TGG | - | Chr6:7945088-7945107 | MsG0680030721.01.T01:intron | 30.0% | |
| TAGCTGTGTCTTTAGATATA+GGG | - | Chr6:7943527-7943546 | MsG0680030721.01.T01:three_prime_UTR | 30.0% | |
| TGTTAAACAACAACACATGT+TGG | - | Chr6:7943237-7943256 | MsG0680030721.01.T02:three_prime_UTR | 30.0% | |
| TTTATTCTAATCGGTAACAC+AGG | + | Chr6:7943872-7943891 | None:intergenic | 30.0% | |
| ! | GAAATGGTGAAGAATGATTT+TGG | + | Chr6:7944206-7944225 | None:intergenic | 30.0% |
| ! | GGGGCATTATTCAATAATTT+GGG | - | Chr6:7944598-7944617 | MsG0680030721.01.T01:intron | 30.0% |
| ! | GTGTTTAGTCTTTGCAAATA+GGG | - | Chr6:7944914-7944933 | MsG0680030721.01.T01:intron | 30.0% |
| ! | TGGGGCATTATTCAATAATT+TGG | - | Chr6:7944597-7944616 | MsG0680030721.01.T01:intron | 30.0% |
| ! | TGTGTTTAGTCTTTGCAAAT+AGG | - | Chr6:7944913-7944932 | MsG0680030721.01.T01:intron | 30.0% |
| ! | TGTTTAGTCTTTGCAAATAG+GGG | - | Chr6:7944915-7944934 | MsG0680030721.01.T01:intron | 30.0% |
| !! | ATTTGTGAGCCATTTTATCA+AGG | - | Chr6:7945223-7945242 | MsG0680030721.01.T01:intron | 30.0% |
| !! | CTTCATATTTTAAGCAGCTT+TGG | + | Chr6:7943716-7943735 | None:intergenic | 30.0% |
| !! | TTTGAGGTTGGTTCTATTAT+TGG | - | Chr6:7944372-7944391 | MsG0680030721.01.T01:intron | 30.0% |
| !!! | AATTTGGTGTTTTTTGAGGT+TGG | - | Chr6:7944360-7944379 | MsG0680030721.01.T01:intron | 30.0% |
| !!! | ACTGAATTTGGTGTTTTTTG+AGG | - | Chr6:7944356-7944375 | MsG0680030721.01.T01:intron | 30.0% |
| !!! | TCATTTTTTACCTTGAAGGA+CGG | - | Chr6:7943606-7943625 | MsG0680030721.01.T01:three_prime_UTR | 30.0% |
| AAAGAAAACACACTCACACT+TGG | - | Chr6:7944089-7944108 | MsG0680030721.01.T01:intron | 35.0% | |
| AAGCTTCGATTCAACAACTT+CGG | - | Chr6:7944146-7944165 | MsG0680030721.01.T01:intron | 35.0% | |
| AATTCTTGCACTCTTCTCAA+TGG | + | Chr6:7944249-7944268 | None:intergenic | 35.0% | |
| ACTCTTGGATCCATATTCAT+GGG | + | Chr6:7944559-7944578 | None:intergenic | 35.0% | |
| ATAAACACACCTAATCCCAT+AGG | - | Chr6:7943687-7943706 | MsG0680030721.01.T01:CDS | 35.0% | |
| CTCAAGACTATTCTTAGCTT+CGG | - | Chr6:7942538-7942557 | MsG0680030721.01.T02:three_prime_UTR | 35.0% | |
| GCCTTAAATTTATGGTGCTT+AGG | + | Chr6:7944825-7944844 | None:intergenic | 35.0% | |
| GGAAATAATGTAGTTGCTCT+CGG | - | Chr6:7942771-7942790 | MsG0680030721.01.T02:three_prime_UTR | 35.0% | |
| GTAGCTGTGTCTTTAGATAT+AGG | - | Chr6:7943526-7943545 | MsG0680030721.01.T01:three_prime_UTR | 35.0% | |
| TACATGAGTCAATGTTGTGT+CGG | - | Chr6:7943074-7943093 | MsG0680030721.01.T02:three_prime_UTR | 35.0% | |
| TAGATTCTTTCAGTCTCCAA+TGG | - | Chr6:7942615-7942634 | MsG0680030721.01.T02:three_prime_UTR | 35.0% | |
| TATTGAATAATGCCCCAAAC+TGG | + | Chr6:7944594-7944613 | None:intergenic | 35.0% | |
| TGCAAGAATTGGAATAGCTT+TGG | - | Chr6:7944259-7944278 | MsG0680030721.01.T01:intron | 35.0% | |
| TTCCATAACACCAGAAAAGT+TGG | + | Chr6:7942755-7942774 | None:intergenic | 35.0% | |
| TTTGCTCAAAATTCCTCTCA+AGG | + | Chr6:7944293-7944312 | None:intergenic | 35.0% | |
| TTTGTTTGAAAATGGTCCCT+GGG | - | Chr6:7945339-7945358 | MsG0680030721.01.T01:CDS | 35.0% | |
| ! | AAGTGTGAGTGTGTTTTCTT+TGG | + | Chr6:7944090-7944109 | None:intergenic | 35.0% |
| ! | ATTGAGAAGAGTGCAAGAAT+TGG | - | Chr6:7944248-7944267 | MsG0680030721.01.T01:intron | 35.0% |
| ! | GATTTTCGTCCCTGTAATAT+AGG | - | Chr6:7945255-7945274 | MsG0680030721.01.T01:intron | 35.0% |
| ! | GTGCGTTTAATCTGAAATGT+TGG | - | Chr6:7943269-7943288 | MsG0680030721.01.T02:three_prime_UTR | 35.0% |
| ! | TAGCATTTTGTGAACTTGAG+AGG | - | Chr6:7943396-7943415 | MsG0680030721.01.T01:three_prime_UTR | 35.0% |
| ! | TAGTAATGGGATTGACTACA+TGG | + | Chr6:7944028-7944047 | None:intergenic | 35.0% |
| !! | TTTTGTTTGAAAATGGTCCC+TGG | - | Chr6:7945338-7945357 | MsG0680030721.01.T01:CDS | 35.0% |
| !!! | CCAACAGCTGTTTTAGTAAT+GGG | + | Chr6:7944041-7944060 | None:intergenic | 35.0% |
| !!! | TCCAACAGCTGTTTTAGTAA+TGG | + | Chr6:7944042-7944061 | None:intergenic | 35.0% |
| AATAATGTAGTTGCTCTCGG+TGG | - | Chr6:7942774-7942793 | MsG0680030721.01.T02:three_prime_UTR | 40.0% | |
| ACACCAGAAAAGTTGGCAAT+TGG | + | Chr6:7942748-7942767 | None:intergenic | 40.0% | |
| ACATGTAAATGCTAGTGTCG+TGG | + | Chr6:7943150-7943169 | None:intergenic | 40.0% | |
| ACGAAGCAATCAATCGTCTT+TGG | + | Chr6:7942862-7942881 | None:intergenic | 40.0% | |
| ATGCCTCATCTAACTAGGTA+AGG | + | Chr6:7943491-7943510 | None:intergenic | 40.0% | |
| CAAAACGCGCCTATATTACA+GGG | + | Chr6:7945267-7945286 | None:intergenic | 40.0% | |
| CAACCTTACCTAGTTAGATG+AGG | - | Chr6:7943485-7943504 | MsG0680030721.01.T01:three_prime_UTR | 40.0% | |
| CACCAGAAAAGTTGGCAATT+GGG | + | Chr6:7942747-7942766 | None:intergenic | 40.0% | |
| CAGTATTGCATGACTATGCT+GGG | - | Chr6:7942692-7942711 | MsG0680030721.01.T02:three_prime_UTR | 40.0% | |
| CCCATTACTAAAACAGCTGT+TGG | - | Chr6:7944038-7944057 | MsG0680030721.01.T01:intron | 40.0% | |
| CCTGAAACTAAAGTCTGGAA+AGG | - | Chr6:7942569-7942588 | MsG0680030721.01.T02:three_prime_UTR | 40.0% | |
| CGGGTATGTTACTAGTATGT+TGG | + | Chr6:7945140-7945159 | None:intergenic | 40.0% | |
| CTCTTGGATCCATATTCATG+GGG | + | Chr6:7944558-7944577 | None:intergenic | 40.0% | |
| CTGAACCTGAAACTAAAGTC+TGG | - | Chr6:7942564-7942583 | MsG0680030721.01.T02:three_prime_UTR | 40.0% | |
| CTGTAATGCCTCATCTAACT+AGG | + | Chr6:7943496-7943515 | None:intergenic | 40.0% | |
| GACTCTTGGATCCATATTCA+TGG | + | Chr6:7944560-7944579 | None:intergenic | 40.0% | |
| GTGTTCACAAGACTTAATGC+TGG | - | Chr6:7942825-7942844 | MsG0680030721.01.T02:three_prime_UTR | 40.0% | |
| GTTGAGGTAGTCATTAGCAA+AGG | - | Chr6:7944316-7944335 | MsG0680030721.01.T01:intron | 40.0% | |
| TACACGAGTCAATGTTGTGT+CGG | - | Chr6:7943214-7943233 | MsG0680030721.01.T02:three_prime_UTR | 40.0% | |
| TAGTGAATGGTGCTTTCCAT+TGG | + | Chr6:7942634-7942653 | None:intergenic | 40.0% | |
| TCAAAACGCGCCTATATTAC+AGG | + | Chr6:7945268-7945287 | None:intergenic | 40.0% | |
| TCAAGATGTAGCACCAGTTT+GGG | - | Chr6:7944578-7944597 | MsG0680030721.01.T01:intron | 40.0% | |
| TCAGTATTGCATGACTATGC+TGG | - | Chr6:7942691-7942710 | MsG0680030721.01.T02:three_prime_UTR | 40.0% | |
| TGAACTCAGCCTGTTTCATA+CGG | + | Chr6:7942674-7942693 | None:intergenic | 40.0% | |
| TGTCGGACAAAAACACATGT+TGG | - | Chr6:7943097-7943116 | MsG0680030721.01.T02:three_prime_UTR | 40.0% | |
| ! | AACCCAATTGCCAACTTTTC+TGG | - | Chr6:7942742-7942761 | MsG0680030721.01.T02:three_prime_UTR | 40.0% |
| ! | ATGGTAGTACGAAGCATTCA+GGG | + | Chr6:7944009-7944028 | None:intergenic | 40.0% |
| ! | CCTTTCCAGACTTTAGTTTC+AGG | + | Chr6:7942572-7942591 | None:intergenic | 40.0% |
| ! | CGAAGCTAAGAATAGTCTTG+AGG | + | Chr6:7942540-7942559 | None:intergenic | 40.0% |
| ! | TCTGAAATGTTGGTGCGTTA+TGG | - | Chr6:7943279-7943298 | MsG0680030721.01.T02:three_prime_UTR | 40.0% |
| !! | ATTCTTCACCATTTCTGGTG+AGG | - | Chr6:7944211-7944230 | MsG0680030721.01.T01:intron | 40.0% |
| !! | CAGACTTTAGTTTCAGGTTC+AGG | + | Chr6:7942566-7942585 | None:intergenic | 40.0% |
| !! | TGCCAACTTTTCTGGTGTTA+TGG | - | Chr6:7942750-7942769 | MsG0680030721.01.T02:three_prime_UTR | 40.0% |
| CAAGATGTAGCACCAGTTTG+GGG | - | Chr6:7944579-7944598 | MsG0680030721.01.T01:intron | 45.0% | |
| CTTTGGACACCTATGGGATT+AGG | + | Chr6:7943699-7943718 | None:intergenic | 45.0% | |
| GGGATATGGTAAATGCATGC+AGG | - | Chr6:7943967-7943986 | MsG0680030721.01.T01:intron | 45.0% | |
| GTCAAGATGTAGCACCAGTT+TGG | - | Chr6:7944577-7944596 | MsG0680030721.01.T01:intron | 45.0% | |
| TAAAACAGCTGTTGGAGCTG+AGG | - | Chr6:7944046-7944065 | MsG0680030721.01.T01:intron | 45.0% | |
| TAGTGTCGTGATCAGTGTCA+GGG | + | Chr6:7943000-7943019 | None:intergenic | 45.0% | |
| TCGATTCAACAACTTCGGAC+TGG | - | Chr6:7944151-7944170 | MsG0680030721.01.T01:intron | 45.0% | |
| TTAGTGTCGTGATCAGTGTC+AGG | + | Chr6:7943001-7943020 | None:intergenic | 45.0% | |
| TTGGTGCGTTATGGTAGCTT+TGG | - | Chr6:7943288-7943307 | MsG0680030721.01.T02:three_prime_UTR | 45.0% | |
| TTGTCAGAATCCGTCCTTCA+AGG | + | Chr6:7943619-7943638 | None:intergenic | 45.0% | |
| ! | AGTCAATGTTGTGTCGGTGT+CGG | - | Chr6:7943080-7943099 | MsG0680030721.01.T02:three_prime_UTR | 45.0% |
| ! | CATGGTAGTACGAAGCATTC+AGG | + | Chr6:7944010-7944029 | None:intergenic | 45.0% |
| ! | GCTAAGAATAGTCTTGAGGC+AGG | + | Chr6:7942536-7942555 | None:intergenic | 45.0% |
| !! | AAGCAGCTTTGGACACCTAT+GGG | + | Chr6:7943705-7943724 | None:intergenic | 45.0% |
| !! | GGTTGGTCGTGGATGATTTT+GGG | - | Chr6:7945178-7945197 | MsG0680030721.01.T01:intron | 45.0% |
| !! | TAAGCAGCTTTGGACACCTA+TGG | + | Chr6:7943706-7943725 | None:intergenic | 45.0% |
| !! | TGGTGCTACATCTTGACTCT+TGG | + | Chr6:7944574-7944593 | None:intergenic | 45.0% |
| !! | TGGTTGGTCGTGGATGATTT+TGG | - | Chr6:7945177-7945196 | MsG0680030721.01.T01:intron | 45.0% |
| !! | TTTGGCTCTCAAACCTTGAG+AGG | - | Chr6:7944277-7944296 | MsG0680030721.01.T01:intron | 45.0% |
| !!! | ATTTTTTATAGAATATAAAA+TGG | + | Chr6:7944627-7944646 | None:intergenic | 5.0% |
| AACATACCCGTGCATCTGCA+CGG | - | Chr6:7945150-7945169 | MsG0680030721.01.T01:intron | 50.0% | |
| CATCCAGTGTCATGCAATGG+TGG | - | Chr6:7944673-7944692 | MsG0680030721.01.T01:intron | 50.0% | |
| GGTCATCCAGTGTCATGCAA+TGG | - | Chr6:7944670-7944689 | MsG0680030721.01.T01:intron | 50.0% | |
| GTGGTTGTGCCCCATGAATA+TGG | - | Chr6:7944546-7944565 | MsG0680030721.01.T01:intron | 50.0% | |
| TAGCCACCATTGCATGACAC+TGG | + | Chr6:7944679-7944698 | None:intergenic | 50.0% | |
| TAGTGTCGTGGTCAGTGTCA+TGG | + | Chr6:7943138-7943157 | None:intergenic | 50.0% | |
| TGCACTCTTCTCAATGGCCT+TGG | + | Chr6:7944243-7944262 | None:intergenic | 50.0% | |
| TGCCAACTCAGCTGAACAGT+GGG | + | Chr6:7945365-7945384 | None:intergenic | 50.0% | |
| TTGCCAACTCAGCTGAACAG+TGG | + | Chr6:7945366-7945385 | None:intergenic | 50.0% | |
| ! | AATAGTCTTGAGGCAGGAGC+TGG | + | Chr6:7942530-7942549 | None:intergenic | 50.0% |
| ! | ACTGTGCAACTTTTGCCACG+TGG | - | Chr6:7945411-7945430 | MsG0680030721.01.T01:CDS | 50.0% |
| ! | ACTGTTCAGCTGAGTTGGCA+AGG | - | Chr6:7945365-7945384 | MsG0680030721.01.T01:CDS | 50.0% |
| ! | CTGTTCAGCTGAGTTGGCAA+GGG | - | Chr6:7945366-7945385 | MsG0680030721.01.T01:CDS | 50.0% |
| !! | AACAACTTCGGACTGGCAAG+CGG | - | Chr6:7944158-7944177 | MsG0680030721.01.T01:intron | 50.0% |
| !! | CTTCACCATTTCTGGTGAGG+TGG | - | Chr6:7944214-7944233 | MsG0680030721.01.T01:intron | 50.0% |
| !! | GTTTGCTGTCAACCCAATGC+TGG | + | Chr6:7942725-7942744 | None:intergenic | 50.0% |
| ACATACCCGTGCATCTGCAC+GGG | - | Chr6:7945151-7945170 | MsG0680030721.01.T01:intron | 55.0% | |
| CTGGGATTTCCGCCAGCATT+GGG | - | Chr6:7942710-7942729 | MsG0680030721.01.T02:three_prime_UTR | 55.0% | |
| GGTGTCCACCTCACCAGAAA+TGG | + | Chr6:7944222-7944241 | None:intergenic | 55.0% | |
| TGCTGTCAACCCAATGCTGG+CGG | + | Chr6:7942722-7942741 | None:intergenic | 55.0% | |
| TTCTGGTGAGGTGGACACCA+AGG | - | Chr6:7944223-7944242 | MsG0680030721.01.T01:intron | 55.0% | |
| ! | ATTTTGGACGCCACTCGTGC+TGG | + | Chr6:7944190-7944209 | None:intergenic | 55.0% |
| ! | CAGCTGAGTTGGCAAGGGTT+TGG | - | Chr6:7945371-7945390 | MsG0680030721.01.T01:CDS | 55.0% |
| CACAGTCAGCAACTGCCACG+TGG | + | Chr6:7945397-7945416 | None:intergenic | 60.0% | |
| CAGTACCCGTGCAGATGCAC+GGG | + | Chr6:7945159-7945178 | None:intergenic | 60.0% | |
| CCAGTACCCGTGCAGATGCA+CGG | + | Chr6:7945160-7945179 | None:intergenic | 60.0% | |
| GCTGGGATTTCCGCCAGCAT+TGG | - | Chr6:7942709-7942728 | MsG0680030721.01.T02:three_prime_UTR | 60.0% | |
| GGCCCACTGTTCAGCTGAGT+TGG | - | Chr6:7945360-7945379 | MsG0680030721.01.T01:CDS | 60.0% | |
| TCAGCTGAACAGTGGGCCCA+GGG | + | Chr6:7945358-7945377 | None:intergenic | 60.0% | |
| TTGGCAAGGGTTTGGCCACG+TGG | - | Chr6:7945379-7945398 | MsG0680030721.01.T01:CDS | 60.0% | |
| !! | GCATCTGCACGGGTACTGGT+TGG | - | Chr6:7945161-7945180 | MsG0680030721.01.T01:intron | 60.0% |
| CCGTGCATCTGCACGGGTAC+TGG | - | Chr6:7945157-7945176 | MsG0680030721.01.T01:intron | 65.0% | |
| CTCAGCTGAACAGTGGGCCC+AGG | + | Chr6:7945359-7945378 | None:intergenic | 65.0% | |
| GCGGTCTCATCCAGCACGAG+TGG | - | Chr6:7944177-7944196 | MsG0680030721.01.T01:intron | 65.0% | |
| !! | GCACGGGTACTGGTTGGTCG+TGG | - | Chr6:7945167-7945186 | MsG0680030721.01.T01:intron | 65.0% |
| !! | TTTGCCACGTGGCGCTGACG+TGG | - | Chr6:7945422-7945441 | MsG0680030721.01.T01:CDS | 65.0% |
| CACGCCACGTCAGCGCCACG+TGG | + | Chr6:7945429-7945448 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 7942494 | 7945454 | 7942494 | ID=MsG0680030721.01;Name=MsG0680030721.01 |
| Chr6 | mRNA | 7943316 | 7945454 | 7943316 | ID=MsG0680030721.01.T01;Parent=MsG0680030721.01;Name=MsG0680030721.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.5|0.66|1|0|0|3|314|161 |
| Chr6 | exon | 7943316 | 7943340 | 7943316 | ID=MsG0680030721.01.T01:exon:6933;Parent=MsG0680030721.01.T01 |
| Chr6 | exon | 7943364 | 7943959 | 7943364 | ID=MsG0680030721.01.T01:exon:6932;Parent=MsG0680030721.01.T01 |
| Chr6 | CDS | 7945276 | 7945454 | 7945276 | ID=MsG0680030721.01.T01:cds;Parent=MsG0680030721.01.T01 |
| Chr6 | CDS | 7943653 | 7943959 | 7943653 | ID=MsG0680030721.01.T01:cds;Parent=MsG0680030721.01.T01 |
| Chr6 | three_prime_UTR | 7943364 | 7943652 | 7943364 | ID=MsG0680030721.01.T01:three_prime_utr;Parent=MsG0680030721.01.T01 |
| Chr6 | three_prime_UTR | 7943316 | 7943340 | 7943316 | ID=MsG0680030721.01.T01:three_prime_utr;Parent=MsG0680030721.01.T01 |
| Chr6 | mRNA | 7942494 | 7945454 | 7942494 | ID=MsG0680030721.01.T02;Parent=MsG0680030721.01;Name=MsG0680030721.01.T02;_AED=0.46;_eAED=0.46;_QI=0|0|0.5|1|0|0.5|2|1159|161 |
| Chr6 | exon | 7942494 | 7943959 | 7942494 | ID=MsG0680030721.01.T02:exon:6934;Parent=MsG0680030721.01.T02 |
| Chr6 | CDS | 7945276 | 7945454 | 7945276 | ID=MsG0680030721.01.T02:cds;Parent=MsG0680030721.01.T02 |
| Chr6 | CDS | 7943653 | 7943959 | 7943653 | ID=MsG0680030721.01.T02:cds;Parent=MsG0680030721.01.T02 |
| Chr6 | three_prime_UTR | 7942494 | 7943652 | 7942494 | ID=MsG0680030721.01.T02:three_prime_utr;Parent=MsG0680030721.01.T02 |
| Gene Sequence |
| Protein sequence |
