Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029370.01.T01 | RHN57287.1 | 98.148 | 108 | 2 | 0 | 3 | 110 | 360 | 467 | 7.90E-67 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029370.01.T01 | Q67UF5 | 78.704 | 108 | 22 | 1 | 3 | 110 | 335 | 441 | 9.79E-54 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029370.01.T01 | A0A396I351 | 98.148 | 108 | 2 | 0 | 3 | 110 | 360 | 467 | 3.77e-67 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0580029370.01 | 0.848805 | 4.850543e-60 | 9.008224e-57 |
| MsG0080048383.01 | MsG0580029370.01 | 0.806884 | 6.623274e-50 | 3.636320e-47 |
| MsG0080048687.01 | MsG0580029370.01 | 0.844407 | 7.707975e-59 | 1.243122e-55 |
| MsG0080048784.01 | MsG0580029370.01 | 0.826181 | 3.123072e-54 | 2.907564e-51 |
| MsG0080048971.01 | MsG0580029370.01 | 0.820838 | 5.549686e-53 | 4.440425e-50 |
| MsG0180000047.01 | MsG0580029370.01 | 0.832033 | 1.190958e-55 | 1.315364e-52 |
| MsG0180000339.01 | MsG0580029370.01 | 0.836164 | 1.098868e-56 | 1.373529e-53 |
| MsG0180001237.01 | MsG0580029370.01 | 0.826009 | 3.432472e-54 | 3.180037e-51 |
| MsG0180001260.01 | MsG0580029370.01 | 0.816152 | 6.407375e-52 | 4.504929e-49 |
| MsG0180001599.01 | MsG0580029370.01 | 0.807788 | 4.259672e-50 | 2.394263e-47 |
| MsG0180002547.01 | MsG0580029370.01 | 0.815151 | 1.070866e-51 | 7.324843e-49 |
| MsG0180003651.01 | MsG0580029370.01 | 0.824437 | 8.076898e-54 | 7.153742e-51 |
| MsG0180003693.01 | MsG0580029370.01 | 0.813828 | 2.100235e-51 | 1.386112e-48 |
| MsG0180003793.01 | MsG0580029370.01 | 0.840875 | 6.680017e-58 | 9.645426e-55 |
| MsG0180004009.01 | MsG0580029370.01 | 0.816232 | 6.148446e-52 | 4.332212e-49 |
| MsG0180004128.01 | MsG0580029370.01 | 0.843865 | 1.077132e-58 | 1.708128e-55 |
| MsG0180004130.01 | MsG0580029370.01 | 0.812341 | 4.451660e-51 | 2.823137e-48 |
| MsG0180004767.01 | MsG0580029370.01 | 0.817927 | 2.558520e-52 | 1.888416e-49 |
| MsG0180004854.01 | MsG0580029370.01 | 0.828894 | 6.974977e-55 | 7.024716e-52 |
| MsG0180004861.01 | MsG0580029370.01 | 0.821141 | 4.728030e-53 | 3.814933e-50 |
| MsG0180004991.01 | MsG0580029370.01 | 0.821551 | 3.801418e-53 | 3.102490e-50 |
| MsG0180005746.01 | MsG0580029370.01 | 0.804656 | 1.945713e-49 | 1.008863e-46 |
| MsG0280006305.01 | MsG0580029370.01 | 0.818342 | 2.060548e-52 | 1.538423e-49 |
| MsG0280010801.01 | MsG0580029370.01 | 0.818793 | 1.628276e-52 | 1.230806e-49 |
| MsG0280011388.01 | MsG0580029370.01 | 0.815434 | 9.262841e-52 | 6.385594e-49 |
| MsG0380012073.01 | MsG0580029370.01 | 0.831429 | 1.677558e-55 | 1.819893e-52 |
| MsG0380013641.01 | MsG0580029370.01 | 0.802107 | 6.564435e-49 | 3.188485e-46 |
| MsG0380014778.01 | MsG0580029370.01 | 0.877146 | 7.940174e-69 | 3.950923e-65 |
| MsG0480018477.01 | MsG0580029370.01 | 0.811427 | 7.041122e-51 | 4.357297e-48 |
| MsG0480021812.01 | MsG0580029370.01 | 0.814296 | 1.656432e-51 | 1.107199e-48 |
| MsG0480021832.01 | MsG0580029370.01 | 0.827354 | 1.639026e-54 | 1.578629e-51 |
| MsG0480022960.01 | MsG0580029370.01 | 0.835796 | 1.362212e-56 | 1.683695e-53 |
| MsG0480023149.01 | MsG0580029370.01 | 0.839500 | 1.526990e-57 | 2.112751e-54 |
| MsG0480023221.01 | MsG0580029370.01 | 0.862065 | 6.599111e-64 | 1.907309e-60 |
| MsG0480023361.01 | MsG0580029370.01 | 0.806777 | 6.977495e-50 | 3.820120e-47 |
| MsG0480023387.01 | MsG0580029370.01 | 0.830696 | 2.538981e-55 | 2.695492e-52 |
| MsG0480023559.01 | MsG0580029370.01 | 0.842010 | 3.356918e-58 | 5.021354e-55 |
| MsG0480023725.01 | MsG0580029370.01 | 0.836519 | 8.925274e-57 | 1.127434e-53 |
| MsG0580024618.01 | MsG0580029370.01 | 0.802583 | 5.237857e-49 | 2.575183e-46 |
| MsG0580024819.01 | MsG0580029370.01 | 0.805263 | 1.452651e-49 | 7.650330e-47 |
| MsG0580025268.01 | MsG0580029370.01 | 0.820575 | 6.378910e-53 | 5.066357e-50 |
| MsG0380015435.01 | MsG0580029370.01 | 0.802636 | 5.107911e-49 | 2.514703e-46 |
| MsG0380016290.01 | MsG0580029370.01 | 0.868888 | 4.670715e-66 | 1.717631e-62 |
| MsG0380016389.01 | MsG0580029370.01 | 0.844320 | 8.133882e-59 | 1.308226e-55 |
| MsG0380016604.01 | MsG0580029370.01 | 0.801505 | 8.725624e-49 | 4.174069e-46 |
| MsG0380017431.01 | MsG0580029370.01 | 0.839640 | 1.403949e-57 | 1.950829e-54 |
| MsG0580028060.01 | MsG0580029370.01 | 0.819804 | 9.579218e-53 | 7.447605e-50 |
| MsG0580028897.01 | MsG0580029370.01 | 0.808128 | 3.605460e-50 | 2.044818e-47 |
| MsG0580029132.01 | MsG0580029370.01 | 0.855457 | 6.228099e-62 | 1.438889e-58 |
| MsG0580029148.01 | MsG0580029370.01 | 0.809432 | 1.897949e-50 | 1.114178e-47 |
| MsG0580029300.01 | MsG0580029370.01 | 0.839771 | 1.298407e-57 | 1.811414e-54 |
| MsG0580029370.01 | MsG0580029371.01 | 0.856450 | 3.191983e-62 | 7.621703e-59 |
| MsG0580029370.01 | MsG0580029588.01 | 0.823328 | 1.469231e-53 | 1.261084e-50 |
| MsG0580029370.01 | MsG0580029801.01 | 0.838068 | 3.581597e-57 | 4.743309e-54 |
| MsG0580029370.01 | MsG0580030003.01 | 0.827510 | 1.503604e-54 | 1.454599e-51 |
| MsG0580029370.01 | MsG0580030160.01 | 0.810971 | 8.841423e-51 | 5.406348e-48 |
| MsG0580029370.01 | MsG0580030204.01 | 0.840674 | 7.543971e-58 | 1.082440e-54 |
| MsG0580029370.01 | MsG0680030721.01 | 0.804707 | 1.898018e-49 | 9.854552e-47 |
| MsG0580029370.01 | MsG0680031507.01 | 0.821505 | 3.896817e-53 | 3.175994e-50 |
| MsG0580029370.01 | MsG0680035306.01 | 0.817356 | 3.440669e-52 | 2.500020e-49 |
| MsG0580029370.01 | MsG0680035577.01 | 0.803202 | 3.900670e-49 | 1.948320e-46 |
| MsG0580029370.01 | MsG0680035888.01 | 0.805886 | 1.074866e-49 | 5.752568e-47 |
| MsG0580029370.01 | MsG0780036240.01 | 0.835829 | 1.336431e-56 | 1.653459e-53 |
| MsG0580029370.01 | MsG0780038400.01 | 0.827529 | 1.487992e-54 | 1.440233e-51 |
| MsG0580029370.01 | MsG0780038587.01 | 0.818443 | 1.955047e-52 | 1.463783e-49 |
| MsG0580029370.01 | MsG0780039643.01 | 0.822226 | 2.652502e-53 | 2.206737e-50 |
| MsG0580029370.01 | MsG0780039845.01 | 0.807123 | 5.894459e-50 | 3.256186e-47 |
| MsG0580029370.01 | MsG0780040070.01 | 0.815924 | 7.204160e-52 | 5.033268e-49 |
| MsG0580029370.01 | MsG0780040125.01 | 0.805959 | 1.037520e-49 | 5.563127e-47 |
| MsG0580029370.01 | MsG0780040569.01 | 0.804482 | 2.115115e-49 | 1.091761e-46 |
| MsG0580029370.01 | MsG0780040718.01 | 0.801818 | 7.524268e-49 | 3.628057e-46 |
| MsG0580029370.01 | MsG0780040920.01 | 0.829337 | 5.445813e-55 | 5.558078e-52 |
| MsG0580029370.01 | MsG0780041223.01 | 0.848043 | 7.881573e-60 | 1.427889e-56 |
| MsG0580029370.01 | MsG0780041351.01 | 0.845451 | 4.028902e-59 | 6.716507e-56 |
| MsG0580029370.01 | MsG0780041423.01 | 0.820535 | 6.516504e-53 | 5.169938e-50 |
| MsG0580029370.01 | MsG0880042033.01 | 0.804415 | 2.183979e-49 | 1.125366e-46 |
| MsG0580029370.01 | MsG0880042128.01 | 0.826570 | 2.522809e-54 | 2.374766e-51 |
| MsG0580029370.01 | MsG0880042760.01 | 0.814133 | 1.799092e-51 | 1.197234e-48 |
| MsG0580029370.01 | MsG0880042795.01 | 0.808487 | 3.023436e-50 | 1.730955e-47 |
| MsG0580029370.01 | MsG0880042991.01 | 0.832006 | 1.208835e-55 | 1.334116e-52 |
| MsG0580029370.01 | MsG0880043716.01 | 0.812069 | 5.102064e-51 | 3.211768e-48 |
| MsG0580029370.01 | MsG0880043748.01 | 0.843116 | 1.707865e-58 | 2.644829e-55 |
| MsG0580029370.01 | MsG0880044565.01 | 0.802452 | 5.573850e-49 | 2.731303e-46 |
| MsG0580029370.01 | MsG0880045294.01 | 0.806923 | 6.498421e-50 | 3.571364e-47 |
| MsG0580029370.01 | MsG0880045656.01 | 0.843064 | 1.762531e-58 | 2.725045e-55 |
| MsG0580029370.01 | MsG0880046074.01 | 0.800041 | 1.735789e-48 | 8.001124e-46 |
| MsG0580029370.01 | MsG0880046177.01 | 0.822519 | 2.268832e-53 | 1.903499e-50 |
| MsG0580029370.01 | MsG0880046933.01 | 0.806746 | 7.080855e-50 | 3.873720e-47 |
| MsG0580029370.01 | MsG0880047192.01 | 0.813825 | 2.103471e-51 | 1.388153e-48 |
| MsG0580029370.01 | MsG0880047388.01 | 0.825638 | 4.202365e-54 | 3.852277e-51 |
| MsG0280006993.01 | MsG0580029370.01 | 0.853744 | 1.951271e-61 | 4.259131e-58 |
| MsG0280007440.01 | MsG0580029370.01 | 0.862431 | 5.093729e-64 | 1.491511e-60 |
| MsG0280007847.01 | MsG0580029370.01 | 0.807493 | 4.919944e-50 | 2.744329e-47 |
| MsG0280007876.01 | MsG0580029370.01 | 0.801040 | 1.086227e-48 | 5.135875e-46 |
| MsG0280008118.01 | MsG0580029370.01 | 0.848295 | 6.713885e-60 | 1.226467e-56 |
| MsG0280009141.01 | MsG0580029370.01 | 0.821162 | 4.675415e-53 | 3.774657e-50 |
| MsG0280009165.01 | MsG0580029370.01 | 0.823449 | 1.377119e-53 | 1.186051e-50 |
| MsG0280009375.01 | MsG0580029370.01 | 0.817479 | 3.227369e-52 | 2.353085e-49 |
| MsG0280009575.01 | MsG0580029370.01 | 0.827442 | 1.561162e-54 | 1.507417e-51 |
| MsG0280010002.01 | MsG0580029370.01 | 0.809024 | 2.321726e-50 | 1.348086e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029370.01.T01 | MTR_5g084930 | 98.148 | 108 | 2 | 0 | 3 | 110 | 328 | 435 | 1.27e-70 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029370.01.T01 | AT2G32920 | 71.818 | 110 | 28 | 3 | 3 | 110 | 332 | 440 | 3.29e-46 | 154 |
| MsG0580029370.01.T01 | AT1G04980 | 69.369 | 111 | 29 | 3 | 4 | 110 | 338 | 447 | 5.17e-45 | 151 |
Find 50 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATCAATTGTTCATTAA+TGG | 0.149709 | 5:+96047869 | None:intergenic |
| TACGAGAATACCTGGTTCTT+TGG | 0.232463 | 5:-96047840 | MsG0580029370.01.T01:three_prime_UTR |
| GATAGTATGTAGAATATTAA+AGG | 0.283108 | 5:-96048062 | MsG0580029370.01.T01:three_prime_UTR |
| TCAATCAATTGTTCATTAAT+GGG | 0.300305 | 5:+96047870 | None:intergenic |
| GTTTCCTTATAGTTCATCTT+TGG | 0.305542 | 5:+96048146 | None:intergenic |
| CTCAAGGTCTGGCTGCTTAC+CGG | 0.356762 | 5:+96048526 | None:intergenic |
| AACACCTTTCTTAACGTTCA+AGG | 0.373568 | 5:+96048460 | None:intergenic |
| TCAACCAAAGATGAACTATA+AGG | 0.387123 | 5:-96048150 | MsG0580029370.01.T01:exon |
| AAAGTTGGTGTTGGTGGGTA+TGG | 0.390826 | 5:-96048500 | MsG0580029370.01.T01:CDS |
| CATCTCCTATAGCATAAAAC+TGG | 0.409206 | 5:+96048084 | None:intergenic |
| GGGTCTTGAACAGCTATGTA+TGG | 0.429572 | 5:-96048556 | None:intergenic |
| AGAGAATTTGTGAAAGAAGC+TGG | 0.439854 | 5:-96048309 | MsG0580029370.01.T01:CDS |
| CCAACTTTCTGCTCAAGGTC+TGG | 0.450805 | 5:+96048515 | None:intergenic |
| TTATAGTTCATCTTTGGTTG+AGG | 0.465932 | 5:+96048152 | None:intergenic |
| ATAGTATGTAGAATATTAAA+GGG | 0.475068 | 5:-96048061 | MsG0580029370.01.T01:three_prime_UTR |
| ACGTTCAAGGCTACTAATGC+TGG | 0.481617 | 5:+96048473 | None:intergenic |
| GGTTCTGTCTTTACAATGGT+GGG | 0.490337 | 5:+96048246 | None:intergenic |
| GAACCATGGGATGGAAAAGA+TGG | 0.495841 | 5:-96048228 | MsG0580029370.01.T01:CDS |
| TGGTTCTGTCTTTACAATGG+TGG | 0.496152 | 5:+96048245 | None:intergenic |
| GAAGCTGGACGTGGAGGCAA+AGG | 0.515570 | 5:-96048294 | MsG0580029370.01.T01:CDS |
| TGGTGGGAGGAGTGTCACCT+AGG | 0.522614 | 5:+96048262 | None:intergenic |
| CCAGACCTTGAGCAGAAAGT+TGG | 0.535182 | 5:-96048515 | MsG0580029370.01.T01:CDS |
| GGTGGGAGGAGTGTCACCTA+GGG | 0.535529 | 5:+96048263 | None:intergenic |
| GAGCAGAAAGTTGGTGTTGG+TGG | 0.549595 | 5:-96048506 | MsG0580029370.01.T01:CDS |
| AACATTATTACGAGAATACC+TGG | 0.552609 | 5:-96047848 | MsG0580029370.01.T01:three_prime_UTR |
| CCATGGTTCTGTCTTTACAA+TGG | 0.553296 | 5:+96048242 | None:intergenic |
| GTAGCCTTGAACGTTAAGAA+AGG | 0.556407 | 5:-96048464 | MsG0580029370.01.T01:CDS |
| AACATACCTCAGGAAAATGT+TGG | 0.556667 | 5:-96047914 | MsG0580029370.01.T01:three_prime_UTR |
| AAAAGATGGAGAAATAATTG+AGG | 0.562273 | 5:-96048214 | MsG0580029370.01.T01:CDS |
| CAACACCAACTTTCTGCTCA+AGG | 0.577087 | 5:+96048510 | None:intergenic |
| AGCAGAAAGTTGGTGTTGGT+GGG | 0.581032 | 5:-96048505 | MsG0580029370.01.T01:CDS |
| AAGCTGGACGTGGAGGCAAA+GGG | 0.583780 | 5:-96048293 | MsG0580029370.01.T01:CDS |
| TTTGTGAAAGAAGCTGGACG+TGG | 0.587104 | 5:-96048303 | MsG0580029370.01.T01:CDS |
| AGCTATGTATGGGCAGCTGC+CGG | 0.590014 | 5:-96048545 | MsG0580029370.01.T01:CDS |
| TTCATGTCATTCTCATTCAG+TGG | 0.591892 | 5:-96047940 | MsG0580029370.01.T01:three_prime_UTR |
| GGTCTTGAACAGCTATGTAT+GGG | 0.597619 | 5:-96048555 | None:intergenic |
| TCTGTCTTTACAATGGTGGG+AGG | 0.605063 | 5:+96048249 | None:intergenic |
| AGTTCAAAAGCACTCTTGAG+AGG | 0.621890 | 5:+96048431 | None:intergenic |
| TCAGTGGTACAACATACCTC+AGG | 0.622601 | 5:-96047924 | MsG0580029370.01.T01:three_prime_UTR |
| CATTGTAAAGACAGAACCAT+GGG | 0.623172 | 5:-96048241 | MsG0580029370.01.T01:CDS |
| GGCAAAGGGAACTTGCCCCT+AGG | 0.627464 | 5:-96048279 | MsG0580029370.01.T01:CDS |
| CTTGAGCAGAAAGTTGGTGT+TGG | 0.628583 | 5:-96048509 | MsG0580029370.01.T01:CDS |
| GTAAAGACAGAACCATGGGA+TGG | 0.640244 | 5:-96048237 | MsG0580029370.01.T01:CDS |
| GAGGAACGATCCAAAGAACC+AGG | 0.646887 | 5:+96047830 | None:intergenic |
| GTGAAAGAAGCTGGACGTGG+AGG | 0.650513 | 5:-96048300 | MsG0580029370.01.T01:CDS |
| AAGACTAGTATAGTGATGAG+TGG | 0.668123 | 5:-96047976 | MsG0580029370.01.T01:three_prime_UTR |
| GTGGGAGGAGTGTCACCTAG+GGG | 0.673404 | 5:+96048264 | None:intergenic |
| GAATATTAAAGGGAAATGTG+TGG | 0.677310 | 5:-96048051 | MsG0580029370.01.T01:three_prime_UTR |
| ACAACCGGCTATGGTCAATG+AGG | 0.692842 | 5:+96047811 | None:intergenic |
| CCATTGTAAAGACAGAACCA+TGG | 0.708421 | 5:-96048242 | MsG0580029370.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAGACTTACATAATT+TGG | + | Chr5:96047972-96047991 | None:intergenic | 15.0% |
| !! | ATAGTATGTAGAATATTAAA+GGG | - | Chr5:96048313-96048332 | MsG0580029370.01.T01:intron | 15.0% |
| !! | GATAGTATGTAGAATATTAA+AGG | - | Chr5:96048312-96048331 | MsG0580029370.01.T01:intron | 20.0% |
| !! | TCAATCAATTGTTCATTAAT+GGG | + | Chr5:96048507-96048526 | None:intergenic | 20.0% |
| !! | TTCAATCAATTGTTCATTAA+TGG | + | Chr5:96048508-96048527 | None:intergenic | 20.0% |
| !!! | CTAATTTTATGCTAAATAGT+TGG | - | Chr5:96047992-96048011 | MsG0580029370.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTTCAGATTTTTCTTGTT+CGG | - | Chr5:96048370-96048389 | MsG0580029370.01.T01:intron | 20.0% |
| ! | AAAAGATGGAGAAATAATTG+AGG | - | Chr5:96048160-96048179 | MsG0580029370.01.T01:CDS | 25.0% |
| AACATTATTACGAGAATACC+TGG | - | Chr5:96048526-96048545 | MsG0580029370.01.T01:CDS | 30.0% | |
| GAATATTAAAGGGAAATGTG+TGG | - | Chr5:96048323-96048342 | MsG0580029370.01.T01:intron | 30.0% | |
| GTTTCCTTATAGTTCATCTT+TGG | + | Chr5:96048231-96048250 | None:intergenic | 30.0% | |
| TCAACCAAAGATGAACTATA+AGG | - | Chr5:96048224-96048243 | MsG0580029370.01.T01:CDS | 30.0% | |
| TTATAGTTCATCTTTGGTTG+AGG | + | Chr5:96048225-96048244 | None:intergenic | 30.0% | |
| ! | ATTTTCTCTTGAAGAACTCA+TGG | - | Chr5:96048190-96048209 | MsG0580029370.01.T01:CDS | 30.0% |
| ! | TTTTCTCTTGAAGAACTCAT+GGG | - | Chr5:96048191-96048210 | MsG0580029370.01.T01:CDS | 30.0% |
| !! | CATTACCAGTTTTATGCTAT+AGG | - | Chr5:96048285-96048304 | MsG0580029370.01.T01:CDS | 30.0% |
| AACACCTTTCTTAACGTTCA+AGG | + | Chr5:96047917-96047936 | None:intergenic | 35.0% | |
| AACATACCTCAGGAAAATGT+TGG | - | Chr5:96048460-96048479 | MsG0580029370.01.T01:CDS | 35.0% | |
| AAGACTAGTATAGTGATGAG+TGG | - | Chr5:96048398-96048417 | MsG0580029370.01.T01:intron | 35.0% | |
| AGAGAATTTGTGAAAGAAGC+TGG | - | Chr5:96048065-96048084 | MsG0580029370.01.T01:three_prime_UTR | 35.0% | |
| CATCTCCTATAGCATAAAAC+TGG | + | Chr5:96048293-96048312 | None:intergenic | 35.0% | |
| CATTGTAAAGACAGAACCAT+GGG | - | Chr5:96048133-96048152 | MsG0580029370.01.T01:exon | 35.0% | |
| GAAAAATCTGAAAAACAGCG+AGG | + | Chr5:96048365-96048384 | None:intergenic | 35.0% | |
| TTCATGTCATTCTCATTCAG+TGG | - | Chr5:96048434-96048453 | MsG0580029370.01.T01:CDS | 35.0% | |
| CCATTGTAAAGACAGAACCA+TGG | - | Chr5:96048132-96048151 | MsG0580029370.01.T01:three_prime_UTR | 40.0% | |
| GGTTCTGTCTTTACAATGGT+GGG | + | Chr5:96048131-96048150 | None:intergenic | 40.0% | |
| ! | AACATGCCAACATTTTCCTG+AGG | + | Chr5:96048469-96048488 | None:intergenic | 40.0% |
| ! | CCATGGTTCTGTCTTTACAA+TGG | + | Chr5:96048135-96048154 | None:intergenic | 40.0% |
| ! | GTAGCCTTGAACGTTAAGAA+AGG | - | Chr5:96047910-96047929 | MsG0580029370.01.T01:three_prime_UTR | 40.0% |
| ! | TACGAGAATACCTGGTTCTT+TGG | - | Chr5:96048534-96048553 | MsG0580029370.01.T01:CDS | 40.0% |
| ! | TAGTGATGAGTGGTCTTTTG+AGG | - | Chr5:96048408-96048427 | MsG0580029370.01.T01:intron | 40.0% |
| ! | TGGTTCTGTCTTTACAATGG+TGG | + | Chr5:96048132-96048151 | None:intergenic | 40.0% |
| !! | AGTTCAAAAGCACTCTTGAG+AGG | + | Chr5:96047946-96047965 | None:intergenic | 40.0% |
| ACGTTCAAGGCTACTAATGC+TGG | + | Chr5:96047904-96047923 | None:intergenic | 45.0% | |
| CAACACCAACTTTCTGCTCA+AGG | + | Chr5:96047867-96047886 | None:intergenic | 45.0% | |
| GAACCATGGGATGGAAAAGA+TGG | - | Chr5:96048146-96048165 | MsG0580029370.01.T01:exon | 45.0% | |
| GTAAAGACAGAACCATGGGA+TGG | - | Chr5:96048137-96048156 | MsG0580029370.01.T01:exon | 45.0% | |
| TCAGTGGTACAACATACCTC+AGG | - | Chr5:96048450-96048469 | MsG0580029370.01.T01:CDS | 45.0% | |
| TGCCCATACATAGCTGTTCA+AGG | + | Chr5:96047824-96047843 | None:intergenic | 45.0% | |
| TTTGTGAAAGAAGCTGGACG+TGG | - | Chr5:96048071-96048090 | MsG0580029370.01.T01:three_prime_UTR | 45.0% | |
| ! | TCTCCATCTTTTCCATCCCA+TGG | + | Chr5:96048152-96048171 | None:intergenic | 45.0% |
| ! | TCTGTCTTTACAATGGTGGG+AGG | + | Chr5:96048128-96048147 | None:intergenic | 45.0% |
| !! | AAAGTTGGTGTTGGTGGGTA+TGG | - | Chr5:96047874-96047893 | MsG0580029370.01.T01:three_prime_UTR | 45.0% |
| !! | AGCAGAAAGTTGGTGTTGGT+GGG | - | Chr5:96047869-96047888 | MsG0580029370.01.T01:three_prime_UTR | 45.0% |
| !! | CTTGAGCAGAAAGTTGGTGT+TGG | - | Chr5:96047865-96047884 | MsG0580029370.01.T01:three_prime_UTR | 45.0% |
| CCAACTTTCTGCTCAAGGTC+TGG | + | Chr5:96047862-96047881 | None:intergenic | 50.0% | |
| CCAGACCTTGAGCAGAAAGT+TGG | - | Chr5:96047859-96047878 | MsG0580029370.01.T01:three_prime_UTR | 50.0% | |
| GAGGAACGATCCAAAGAACC+AGG | + | Chr5:96048547-96048566 | None:intergenic | 50.0% | |
| !! | GAGCAGAAAGTTGGTGTTGG+TGG | - | Chr5:96047868-96047887 | MsG0580029370.01.T01:three_prime_UTR | 50.0% |
| AAGCTGGACGTGGAGGCAAA+GGG | - | Chr5:96048081-96048100 | MsG0580029370.01.T01:three_prime_UTR | 55.0% | |
| AGCTATGTATGGGCAGCTGC+CGG | - | Chr5:96047829-96047848 | MsG0580029370.01.T01:three_prime_UTR | 55.0% | |
| CTCAAGGTCTGGCTGCTTAC+CGG | + | Chr5:96047851-96047870 | None:intergenic | 55.0% | |
| GTGAAAGAAGCTGGACGTGG+AGG | - | Chr5:96048074-96048093 | MsG0580029370.01.T01:three_prime_UTR | 55.0% | |
| GAAGCTGGACGTGGAGGCAA+AGG | - | Chr5:96048080-96048099 | MsG0580029370.01.T01:three_prime_UTR | 60.0% | |
| GGCAAAGGGAACTTGCCCCT+AGG | - | Chr5:96048095-96048114 | MsG0580029370.01.T01:three_prime_UTR | 60.0% | |
| !! | GGTGGGAGGAGTGTCACCTA+GGG | + | Chr5:96048114-96048133 | None:intergenic | 60.0% |
| !! | GTGGGAGGAGTGTCACCTAG+GGG | + | Chr5:96048113-96048132 | None:intergenic | 60.0% |
| !! | TGGTGGGAGGAGTGTCACCT+AGG | + | Chr5:96048115-96048134 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 96047823 | 96048573 | 96047823 | ID=MsG0580029370.01;Name=MsG0580029370.01 |
| Chr5 | mRNA | 96047823 | 96048573 | 96047823 | ID=MsG0580029370.01.T01;Parent=MsG0580029370.01;Name=MsG0580029370.01.T01;_AED=0.50;_eAED=0.50;_QI=0|1|0.5|1|1|1|2|329|110 |
| Chr5 | exon | 96047823 | 96048329 | 96047823 | ID=MsG0580029370.01.T01:exon:36113;Parent=MsG0580029370.01.T01 |
| Chr5 | exon | 96048419 | 96048573 | 96048419 | ID=MsG0580029370.01.T01:exon:36112;Parent=MsG0580029370.01.T01 |
| Chr5 | CDS | 96048419 | 96048573 | 96048419 | ID=MsG0580029370.01.T01:cds;Parent=MsG0580029370.01.T01 |
| Chr5 | CDS | 96048152 | 96048329 | 96048152 | ID=MsG0580029370.01.T01:cds;Parent=MsG0580029370.01.T01 |
| Chr5 | three_prime_UTR | 96047823 | 96048151 | 96047823 | ID=MsG0580029370.01.T01:three_prime_utr;Parent=MsG0580029370.01.T01 |
| Gene Sequence |
| Protein sequence |
