AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021006.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021006.01.T01 MTR_4g063925 100.000 93 0 0 1 93 1 93 2.61e-66 194
MsG0480021006.01.T01 MTR_4g021715 46.237 93 33 1 1 93 1 76 9.93e-25 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021006.01.T01 AT3G46560 78.495 93 20 0 1 93 1 93 4.57e-51 155

Find 32 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGATTATACGCAGTGATTT+AGG 0.125954 4:-51986414 None:intergenic
CAAAAGCATGATTGCTGATA+TGG 0.238381 4:+51986452 MsG0480021006.01.T01:CDS
CGATTATACGCAGTGATTTA+GGG 0.278105 4:-51986413 None:intergenic
TGAGCTAGGGTTTATCTTTA+CGG 0.322138 4:+51986366 MsG0480021006.01.T01:five_prime_UTR
TATAATCGTTCGATCCAAAA+TGG 0.326606 4:+51986428 MsG0480021006.01.T01:exon
AACCTCACCTGTCACGGATT+TGG 0.342119 4:-51986527 None:intergenic
TGCTGAAATCTAAATAAGTT+CGG 0.376638 4:+51990232 MsG0480021006.01.T01:three_prime_UTR
CCAGGTTATTATACATTCTC+AGG 0.398941 4:-51989926 None:intergenic
AATCTTGAGTTGCAGCTCCT+TGG 0.400935 4:-51990088 None:intergenic
ATTCTTTGTTTATCTGCCTC+TGG 0.426356 4:-51986483 None:intergenic
TCTTCTTCCACACTTGAGCT+AGG 0.452406 4:+51986352 MsG0480021006.01.T01:five_prime_UTR
GCTGAAATCTAAATAAGTTC+GGG 0.457487 4:+51990233 MsG0480021006.01.T01:three_prime_UTR
CTTCTTCCACACTTGAGCTA+GGG 0.471850 4:+51986353 MsG0480021006.01.T01:five_prime_UTR
TGAAGTCTATTAATTAACAT+TGG 0.487889 4:+51990110 MsG0480021006.01.T01:exon
AGAGGCAGATAAACAAAGAA+TGG 0.502607 4:+51986485 MsG0480021006.01.T01:CDS
TACAGCTTTGTTTGAAAGTG+AGG 0.506466 4:+51990161 MsG0480021006.01.T01:three_prime_UTR
ATCAGCTCCAAATCCGTGAC+AGG 0.514968 4:+51986520 MsG0480021006.01.T01:CDS
CTCTGCACATCTTCGAACAC+AGG 0.526331 4:-51990015 None:intergenic
TTTGGGAACCTCACCTGTCA+CGG 0.540460 4:-51986533 None:intergenic
CTGAAGCACTCTATGCGTGT+TGG 0.545186 4:+51990044 MsG0480021006.01.T01:CDS
ATAATGACAATCAAGAATCT+CGG 0.547637 4:-51990286 None:intergenic
GATTTGGAGCTGATCGATCA+TGG 0.557131 4:-51986511 None:intergenic
CCTGAGAATGTATAATAACC+TGG 0.571370 4:+51989926 MsG0480021006.01.T01:CDS
CATGAAAGCATCTCTCCACC+AGG 0.576768 4:-51989944 None:intergenic
ACTCTATGCGTGTTGGCATG+AGG 0.597417 4:+51990051 MsG0480021006.01.T01:CDS
GATAAACCCTAGCTCAAGTG+TGG 0.600396 4:-51986359 None:intergenic
TAAATCCCTGCAAAAGCAAG+AGG 0.610554 4:+51989989 MsG0480021006.01.T01:CDS
AGGTTTGCTGAGCTCAACCA+AGG 0.659807 4:+51990071 MsG0480021006.01.T01:CDS
GAGATGCTTTCATGATTGTG+TGG 0.661772 4:+51989953 MsG0480021006.01.T01:CDS
AAGAAGATGATATATATACT+AGG 0.665897 4:-51986336 None:intergenic
GAGAATGTATAATAACCTGG+TGG 0.692374 4:+51989929 MsG0480021006.01.T01:CDS
TGATATGGAAAATCTTCCAG+AGG 0.718208 4:+51986467 MsG0480021006.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTATTAGAACTTATAA+CGG - Chr4:51989720-51989739 None:intergenic 10.0%
!!! AAAAAAAACCTAAATTTTTT+TGG - Chr4:51986674-51986693 None:intergenic 10.0%
!! AATAAATTAAGATTTAAACG+TGG + Chr4:51987728-51987747 MsG0480021006.01.T01:intron 15.0%
!! AATAATTTGAGCTTATTTAT+TGG - Chr4:51989544-51989563 None:intergenic 15.0%
!! ACATTAAATAGATCATTAAA+CGG - Chr4:51988306-51988325 None:intergenic 15.0%
!! CTTAATTTATTAGACTTTAT+TGG - Chr4:51987719-51987738 None:intergenic 15.0%
!! TTTGTTTACCAAAAAAATTT+AGG + Chr4:51986663-51986682 MsG0480021006.01.T01:intron 15.0%
!!! AATTTAGGTTTTTTTTTTGT+TGG + Chr4:51986678-51986697 MsG0480021006.01.T01:intron 15.0%
!!! ATAATGTGTTGAATTTATTT+TGG + Chr4:51986712-51986731 MsG0480021006.01.T01:intron 15.0%
!!! TGAATCTTTTTTAAAATTTG+AGG + Chr4:51988769-51988788 MsG0480021006.01.T01:intron 15.0%
!!! TTGAATTTATTTTGGAATTT+GGG + Chr4:51986720-51986739 MsG0480021006.01.T01:intron 15.0%
!! AAATAAATGTACAAACTTTG+AGG - Chr4:51988677-51988696 None:intergenic 20.0%
!! AAGAAGATGATATATATACT+AGG - Chr4:51986339-51986358 None:intergenic 20.0%
!! GTTTAATGATCTATTTAATG+TGG + Chr4:51988305-51988324 MsG0480021006.01.T01:intron 20.0%
!! TCAATATAGTACTTTACTTA+GGG - Chr4:51989580-51989599 None:intergenic 20.0%
!! TGAAGTCTATTAATTAACAT+TGG + Chr4:51990110-51990129 MsG0480021006.01.T01:exon 20.0%
!! TTATTGCTTCATTACATTAT+GGG + Chr4:51989804-51989823 MsG0480021006.01.T01:intron 20.0%
!! TTGGTTTCATAAAATATTAG+TGG + Chr4:51987611-51987630 MsG0480021006.01.T01:intron 20.0%
!!! ATTTTACATATGACTTTGTT+AGG + Chr4:51989773-51989792 MsG0480021006.01.T01:intron 20.0%
!!! CATTTTTGTTTTTGGATAAT+AGG + Chr4:51988128-51988147 MsG0480021006.01.T01:intron 20.0%
!!! CTTTTTTTTCTTTCTTTTGT+TGG + Chr4:51988726-51988745 MsG0480021006.01.T01:intron 20.0%
!!! GCTTTATTATTTACTCATTT+TGG + Chr4:51988592-51988611 MsG0480021006.01.T01:intron 20.0%
!!! GTTGAATTTATTTTGGAATT+TGG + Chr4:51986719-51986738 MsG0480021006.01.T01:intron 20.0%
!!! TGAATCTGTTTTTATATTGA+GGG + Chr4:51987894-51987913 MsG0480021006.01.T01:intron 20.0%
!!! TGAATTTATTTTGGAATTTG+GGG + Chr4:51986721-51986740 MsG0480021006.01.T01:intron 20.0%
!!! TTGAATCTGTTTTTATATTG+AGG + Chr4:51987893-51987912 MsG0480021006.01.T01:intron 20.0%
!!! TTTTACATATGACTTTGTTA+GGG + Chr4:51989774-51989793 MsG0480021006.01.T01:intron 20.0%
!!! TTTTTGTTGTCTATATAATG+TGG + Chr4:51987113-51987132 MsG0480021006.01.T01:intron 20.0%
! AAAAAACCCTAAACTTTACA+AGG - Chr4:51986646-51986665 None:intergenic 25.0%
! AAAATATTAGTGGTGTGTTT+GGG + Chr4:51987621-51987640 MsG0480021006.01.T01:intron 25.0%
! ATAGACAACAAAAATCAATG+TGG - Chr4:51987107-51987126 None:intergenic 25.0%
! CAAATTATCAACATGTCATA+AGG + Chr4:51989476-51989495 MsG0480021006.01.T01:intron 25.0%
! CTCAATATAGTACTTTACTT+AGG - Chr4:51989581-51989600 None:intergenic 25.0%
! GTAAATAATAAAGCTCAATG+TGG - Chr4:51988586-51988605 None:intergenic 25.0%
! GTTATTGCTTCATTACATTA+TGG + Chr4:51989803-51989822 MsG0480021006.01.T01:intron 25.0%
! TAAAATATTAGTGGTGTGTT+TGG + Chr4:51987620-51987639 MsG0480021006.01.T01:intron 25.0%
! TATACCTTAATACAGTCTAT+AGG + Chr4:51988435-51988454 MsG0480021006.01.T01:intron 25.0%
! TATTGCTTCATTACATTATG+GGG + Chr4:51989805-51989824 MsG0480021006.01.T01:intron 25.0%
! TCATGCTAATTTATAAGTTG+CGG + Chr4:51987919-51987938 MsG0480021006.01.T01:intron 25.0%
! TGCTGAAATCTAAATAAGTT+CGG + Chr4:51990232-51990251 MsG0480021006.01.T01:three_prime_UTR 25.0%
! TTCATTCATCTATCACTATT+TGG + Chr4:51988409-51988428 MsG0480021006.01.T01:intron 25.0%
!! AAAAAACGAAGCAATGATTT+TGG - Chr4:51986554-51986573 None:intergenic 25.0%
!! AAAAACGAAGCAATGATTTT+GGG - Chr4:51986553-51986572 None:intergenic 25.0%
!! AATTTAATGAACTAGTCTCT+GGG - Chr4:51988241-51988260 None:intergenic 25.0%
!! AGAGACTAGTTCATTAAATT+GGG + Chr4:51988241-51988260 MsG0480021006.01.T01:intron 25.0%
!!! TTCTAATGAACTAGTCTTTT+GGG - Chr4:51987539-51987558 None:intergenic 25.0%
!!! TTTTAAAATTTGAGGCTTCA+TGG + Chr4:51988777-51988796 MsG0480021006.01.T01:intron 25.0%
!!! TTTTAAGGAGAACATCAATA+TGG - Chr4:51988880-51988899 None:intergenic 25.0%
AAAACTCAATGTGGTAGTTA+AGG - Chr4:51987576-51987595 None:intergenic 30.0%
AAAGTGGTAATTAAACCATG+AGG - Chr4:51988271-51988290 None:intergenic 30.0%
AAATAAATGTACCTCCTTTG+AGG - Chr4:51986615-51986634 None:intergenic 30.0%
AACTAACCCAAAAATTTGCA+AGG - Chr4:51987839-51987858 None:intergenic 30.0%
AATAAATGTACCTCCTTTGA+GGG - Chr4:51986614-51986633 None:intergenic 30.0%
ACGGATAAGAAAAATCAAAG+TGG - Chr4:51988287-51988306 None:intergenic 30.0%
AGAAACATTCAAAAGTCACA+CGG - Chr4:51988904-51988923 None:intergenic 30.0%
AGTTATGACTTAAGCCAATA+TGG + Chr4:51988505-51988524 MsG0480021006.01.T01:intron 30.0%
ATAAGAGCCAATGTCTATAA+CGG + Chr4:51987158-51987177 MsG0480021006.01.T01:intron 30.0%
ATTTGCACCTTGTAAAGTTT+AGG + Chr4:51986636-51986655 MsG0480021006.01.T01:intron 30.0%
CATGCTAATTTATAAGTTGC+GGG + Chr4:51987920-51987939 MsG0480021006.01.T01:intron 30.0%
CATTAGATGAAGGCTTAATT+AGG + Chr4:51989016-51989035 MsG0480021006.01.T01:intron 30.0%
CTTTCTTATCTACTCAATGT+GGG + Chr4:51989601-51989620 MsG0480021006.01.T01:intron 30.0%
GCTGAAATCTAAATAAGTTC+GGG + Chr4:51990233-51990252 MsG0480021006.01.T01:three_prime_UTR 30.0%
TATAATCGTTCGATCCAAAA+TGG + Chr4:51986428-51986447 MsG0480021006.01.T01:exon 30.0%
TCTACCTATAGACTGTATTA+AGG - Chr4:51988442-51988461 None:intergenic 30.0%
TGAAGTTATCATTGTGAGTT+AGG - Chr4:51987268-51987287 None:intergenic 30.0%
TGAAGTTGTTTATCCAAACA+AGG - Chr4:51989317-51989336 None:intergenic 30.0%
TTATTTCCATAAGTTGTCCA+GGG - Chr4:51989439-51989458 None:intergenic 30.0%
TTTGCACCTTGTAAAGTTTA+GGG + Chr4:51986637-51986656 MsG0480021006.01.T01:intron 30.0%
! AATCATGCTTTTGTCCATTT+TGG - Chr4:51986445-51986464 None:intergenic 30.0%
! ATAGTGTTTTCATTGAGAGT+TGG - Chr4:51988477-51988496 None:intergenic 30.0%
! CAAAAGACTAGTTCATTAGA+AGG + Chr4:51987538-51987557 MsG0480021006.01.T01:intron 30.0%
! CAATTTAATGAACTAGTCTC+TGG - Chr4:51988242-51988261 None:intergenic 30.0%
! CAGAGACTAGTTCATTAAAT+TGG + Chr4:51988240-51988259 MsG0480021006.01.T01:intron 30.0%
! CATAGACTAGTTAGTTAGAT+GGG + Chr4:51987068-51987087 MsG0480021006.01.T01:intron 30.0%
! CATCTAACTAACTAGTCTAT+GGG - Chr4:51987069-51987088 None:intergenic 30.0%
! TGACTTTTGAATGTTTCTTC+TGG + Chr4:51988906-51988925 MsG0480021006.01.T01:intron 30.0%
! TTTCCACCTTGCAAATTTTT+GGG + Chr4:51987830-51987849 MsG0480021006.01.T01:intron 30.0%
! TTTTCCACCTTGCAAATTTT+TGG + Chr4:51987829-51987848 MsG0480021006.01.T01:intron 30.0%
! TTTTGATGTCCTCCTTAAAA+TGG + Chr4:51988822-51988841 MsG0480021006.01.T01:intron 30.0%
!! GTCTCTGTCTAAGATTTTTA+TGG + Chr4:51988188-51988207 MsG0480021006.01.T01:intron 30.0%
!! TCTGTCTAAGATTTTTATGG+TGG + Chr4:51988191-51988210 MsG0480021006.01.T01:intron 30.0%
!! TTGGTTTGTATTAGCATTAC+AGG + Chr4:51988745-51988764 MsG0480021006.01.T01:intron 30.0%
!! TTTTAAGGAGAACATCACTA+TGG - Chr4:51986816-51986835 None:intergenic 30.0%
!! TTTTAAGGAGAACGTAACTA+TGG - Chr4:51987989-51988008 None:intergenic 30.0%
!!! CTTCTAATGAACTAGTCTTT+TGG - Chr4:51987540-51987559 None:intergenic 30.0%
!!! GTAGCTGTCATTTTTGTTTT+TGG + Chr4:51988120-51988139 MsG0480021006.01.T01:intron 30.0%
!!! GTTAGTTTTTGTTCTTCTGT+TGG + Chr4:51987852-51987871 MsG0480021006.01.T01:intron 30.0%
!!! TGATTTAGGGTTTTGAGATT+GGG - Chr4:51986403-51986422 None:intergenic 30.0%
!!! TGTCATGTTTTTTGGAGAAT+AGG + Chr4:51986953-51986972 MsG0480021006.01.T01:intron 30.0%
AAATCTTAGACAGAGACCAA+AGG - Chr4:51988185-51988204 None:intergenic 35.0%
AACTTCAATTGTTACGACGT+AGG + Chr4:51987281-51987300 MsG0480021006.01.T01:intron 35.0%
AATGTGGTAGTTAAGGCATA+AGG - Chr4:51987569-51987588 None:intergenic 35.0%
ACCTAATGAACAAGTCTCTA+GGG - Chr4:51988540-51988559 None:intergenic 35.0%
ACGATTATACGCAGTGATTT+AGG - Chr4:51986417-51986436 None:intergenic 35.0%
ACTTCAATTGTTACGACGTA+GGG + Chr4:51987282-51987301 MsG0480021006.01.T01:intron 35.0%
AGAGGCAGATAAACAAAGAA+TGG + Chr4:51986485-51986504 MsG0480021006.01.T01:CDS 35.0%
AGATGAATGAAGCCATGAAA+GGG - Chr4:51988400-51988419 None:intergenic 35.0%
AGTAACCCCTAAAATTTGCA+CGG - Chr4:51988708-51988727 None:intergenic 35.0%
AGTTGACATATTACCAGACA+GGG + Chr4:51989872-51989891 MsG0480021006.01.T01:intron 35.0%
ATAAATGTACCTCCTTTGAG+GGG - Chr4:51986613-51986632 None:intergenic 35.0%
ATAGAACCGAGATTCTTGAT+TGG + Chr4:51990280-51990299 MsG0480021006.01.T01:three_prime_UTR 35.0%
CCAGGTTATTATACATTCTC+AGG - Chr4:51989929-51989948 None:intergenic 35.0%
CCTGAGAATGTATAATAACC+TGG + Chr4:51989926-51989945 MsG0480021006.01.T01:CDS 35.0%
CGATTATACGCAGTGATTTA+GGG - Chr4:51986416-51986435 None:intergenic 35.0%
CTACAGAAAGGAATAGAATG+AGG - Chr4:51989192-51989211 None:intergenic 35.0%
CTCACTAGTTCATTAGATGA+AGG + Chr4:51989006-51989025 MsG0480021006.01.T01:intron 35.0%
CTCATGATAGATTAGTGGTA+TGG + Chr4:51989625-51989644 MsG0480021006.01.T01:intron 35.0%
CTTATTTCCATAAGTTGTCC+AGG - Chr4:51989440-51989459 None:intergenic 35.0%
CTTCATGGTATGTAAGTTGT+TGG + Chr4:51988792-51988811 MsG0480021006.01.T01:intron 35.0%
GAAACATTCAAAAGTCACAC+GGG - Chr4:51988903-51988922 None:intergenic 35.0%
GAGAATGTATAATAACCTGG+TGG + Chr4:51989929-51989948 MsG0480021006.01.T01:CDS 35.0%
GCTTTCTTATCTACTCAATG+TGG + Chr4:51989600-51989619 MsG0480021006.01.T01:intron 35.0%
GTAACAGTCTAGTGTTTGTT+TGG - Chr4:51987697-51987716 None:intergenic 35.0%
GTAGACAAGAAAACTCAATG+TGG - Chr4:51987585-51987604 None:intergenic 35.0%
TAACCCAAAAATTTGCAAGG+TGG - Chr4:51987836-51987855 None:intergenic 35.0%
TACTTTACTTAGGGTCTGTT+GGG - Chr4:51989571-51989590 None:intergenic 35.0%
TAGATGAATGAAGCCATGAA+AGG - Chr4:51988401-51988420 None:intergenic 35.0%
TAGTTGACATATTACCAGAC+AGG + Chr4:51989871-51989890 MsG0480021006.01.T01:intron 35.0%
TATGACTTTGTTAGGGTGAT+TGG + Chr4:51989781-51989800 MsG0480021006.01.T01:intron 35.0%
TCGGCTCTTAAAGTCTTAAA+GGG - Chr4:51989081-51989100 None:intergenic 35.0%
TGAGCTAGGGTTTATCTTTA+CGG + Chr4:51986366-51986385 MsG0480021006.01.T01:five_prime_UTR 35.0%
TGATATGGAAAATCTTCCAG+AGG + Chr4:51986467-51986486 MsG0480021006.01.T01:CDS 35.0%
TTAAGAGCCGACATATACTA+CGG + Chr4:51989090-51989109 MsG0480021006.01.T01:intron 35.0%
TTGTATTAGACTCTCCTTGT+GGG - Chr4:51989254-51989273 None:intergenic 35.0%
TTGTGCTTTCATTGAGAGTT+AGG - Chr4:51989215-51989234 None:intergenic 35.0%
TTTGTATTAGACTCTCCTTG+TGG - Chr4:51989255-51989274 None:intergenic 35.0%
! AATGTTTCTTCTGGACGTTT+TGG + Chr4:51988915-51988934 MsG0480021006.01.T01:intron 35.0%
! ATGCTGTCTTTTAGTACCTT+TGG + Chr4:51986991-51987010 MsG0480021006.01.T01:intron 35.0%
! ATGTTTCTTCTGGACGTTTT+GGG + Chr4:51988916-51988935 MsG0480021006.01.T01:intron 35.0%
! ATTCTTTGTTTATCTGCCTC+TGG - Chr4:51986486-51986505 None:intergenic 35.0%
! CAAAAGCATGATTGCTGATA+TGG + Chr4:51986452-51986471 MsG0480021006.01.T01:CDS 35.0%
! CAAAATCTGCCACCATTTTA+AGG - Chr4:51988837-51988856 None:intergenic 35.0%
! CCATAGACTAGTTAGTTAGA+TGG + Chr4:51987067-51987086 MsG0480021006.01.T01:intron 35.0%
! CCATCTAACTAACTAGTCTA+TGG - Chr4:51987070-51987089 None:intergenic 35.0%
! GGAACTACATTTTCAACAAG+TGG + Chr4:51986873-51986892 MsG0480021006.01.T01:intron 35.0%
! GTGACTTTCAATGTTGCTTA+TGG + Chr4:51988014-51988033 MsG0480021006.01.T01:intron 35.0%
! GTTTGGGTTTCAGTTCAAAA+AGG + Chr4:51987637-51987656 MsG0480021006.01.T01:intron 35.0%
! TGACTATTGAATGTTGCTTC+TGG + Chr4:51986842-51986861 MsG0480021006.01.T01:intron 35.0%
! TGCTGTCTTTTAGTACCTTT+GGG + Chr4:51986992-51987011 MsG0480021006.01.T01:intron 35.0%
! TTATCCTTAGTTCTCCCAAA+CGG + Chr4:51989501-51989520 MsG0480021006.01.T01:intron 35.0%
! TTATGGGGCTCTTGTATTTT+TGG + Chr4:51989820-51989839 MsG0480021006.01.T01:intron 35.0%
! TTTCCACCGTGCAAATTTTA+GGG + Chr4:51988699-51988718 MsG0480021006.01.T01:intron 35.0%
! TTTTCCACCGTGCAAATTTT+AGG + Chr4:51988698-51988717 MsG0480021006.01.T01:intron 35.0%
! TTTTCTTGTCTACTCGATGT+TGG + Chr4:51987592-51987611 MsG0480021006.01.T01:intron 35.0%
!! AAACTTTGAGGCGTAAATCT+GGG - Chr4:51988665-51988684 None:intergenic 35.0%
!! AATGTTGCTTATGGACGTTT+TGG + Chr4:51988023-51988042 MsG0480021006.01.T01:intron 35.0%
!! ATAGACATTGGCTCTTATAG+AGG - Chr4:51987156-51987175 None:intergenic 35.0%
!! ATGTTGCTTATGGACGTTTT+GGG + Chr4:51988024-51988043 MsG0480021006.01.T01:intron 35.0%
!! TACAGCTTTGTTTGAAAGTG+AGG + Chr4:51990161-51990180 MsG0480021006.01.T01:three_prime_UTR 35.0%
!!! CAATAGTCACACTGGTTTTA+AGG - Chr4:51986831-51986850 None:intergenic 35.0%
!!! CTTAGTTGTGTGCTGTTTTT+CGG + Chr4:51988157-51988176 MsG0480021006.01.T01:intron 35.0%
!!! CTTGTAGCTGTCATGTTTTT+TGG + Chr4:51986945-51986964 MsG0480021006.01.T01:intron 35.0%
!!! GTGATTTAGGGTTTTGAGAT+TGG - Chr4:51986404-51986423 None:intergenic 35.0%
!!! TGAAAGTCACACTGGTTTTA+AGG - Chr4:51988004-51988023 None:intergenic 35.0%
AAACAAGGTCTTAAGCCATG+AGG - Chr4:51989302-51989321 None:intergenic 40.0%
AAACACTTGTGAGACCGTTT+GGG - Chr4:51989518-51989537 None:intergenic 40.0%
AAAGGGGAAAGGGATAAAAG+TGG - Chr4:51988383-51988402 None:intergenic 40.0%
AAATGAGTGAACCTGCCAAA+GGG - Chr4:51989143-51989162 None:intergenic 40.0%
AAGGGATAAAAGTGGGTGAA+AGG - Chr4:51988375-51988394 None:intergenic 40.0%
AAGGGGAAAGGGATAAAAGT+GGG - Chr4:51988382-51988401 None:intergenic 40.0%
AATGTGGTACTTAAGTCGTG+AGG - Chr4:51988570-51988589 None:intergenic 40.0%
AGCAACATTGAAAGTCACAC+TGG - Chr4:51988012-51988031 None:intergenic 40.0%
ATTAAATTGGGAGAGCCTCA+TGG + Chr4:51988253-51988272 MsG0480021006.01.T01:intron 40.0%
CAAAATCAGATAACCCTGTC+TGG - Chr4:51989888-51989907 None:intergenic 40.0%
CACCTAATGAACAAGTCTCT+AGG - Chr4:51988541-51988560 None:intergenic 40.0%
CATCAAGTCTAAGAACCTCA+TGG + Chr4:51989284-51989303 MsG0480021006.01.T01:intron 40.0%
CATGACAGCTACAAGTGTTT+AGG - Chr4:51986940-51986959 None:intergenic 40.0%
CCAGAATGAAGAGTTACAGA+GGG - Chr4:51989747-51989766 None:intergenic 40.0%
GAGATGCTTTCATGATTGTG+TGG + Chr4:51989953-51989972 MsG0480021006.01.T01:CDS 40.0%
GATGAATGAAGCCATGAAAG+GGG - Chr4:51988399-51988418 None:intergenic 40.0%
GCAACATTCAATAGTCACAC+TGG - Chr4:51986839-51986858 None:intergenic 40.0%
GTACTTTACTTAGGGTCTGT+TGG - Chr4:51989572-51989591 None:intergenic 40.0%
GTGAAAGCCGTAGTATATGT+CGG - Chr4:51989100-51989119 None:intergenic 40.0%
TAAATCCCTGCAAAAGCAAG+AGG + Chr4:51989989-51990008 MsG0480021006.01.T01:CDS 40.0%
TACCTTTGGGCTCTGTTTAA+TGG + Chr4:51987005-51987024 MsG0480021006.01.T01:intron 40.0%
TAGGGTTAGACTCTCCATAT+TGG - Chr4:51988522-51988541 None:intergenic 40.0%
TCATGGCTTAAGACCTTGTT+TGG + Chr4:51989301-51989320 MsG0480021006.01.T01:intron 40.0%
TCGATGAATGAAACCACCAA+CGG - Chr4:51987193-51987212 None:intergenic 40.0%
TGATGTCCTCCTTAAAATGG+TGG + Chr4:51988825-51988844 MsG0480021006.01.T01:intron 40.0%
TGGGTCTCATGATAGATTAG+TGG + Chr4:51989620-51989639 MsG0480021006.01.T01:intron 40.0%
TGGTGGTTTCATTCATCGAT+CGG + Chr4:51987194-51987213 MsG0480021006.01.T01:intron 40.0%
TGTAGCTTCATCCAACCTAT+AGG + Chr4:51987227-51987246 MsG0480021006.01.T01:intron 40.0%
TGTGAGTTAGGATACAGAGA+GGG - Chr4:51987256-51987275 None:intergenic 40.0%
TTCCATTAAACAGAGCCCAA+AGG - Chr4:51987010-51987029 None:intergenic 40.0%
TTGAGAGTTAGGCTACAGAA+AGG - Chr4:51989204-51989223 None:intergenic 40.0%
TTGTGAGTTAGGATACAGAG+AGG - Chr4:51987257-51987276 None:intergenic 40.0%
TTTATCCCTTTCCCCTTTCA+TGG + Chr4:51988385-51988404 MsG0480021006.01.T01:intron 40.0%
! ACCCTAGAGACTTGTTCATT+AGG + Chr4:51988536-51988555 MsG0480021006.01.T01:intron 40.0%
! CAAAAGTCACACGGGTTTTA+AGG - Chr4:51988895-51988914 None:intergenic 40.0%
! CTAGAGACTTGTTCATTAGG+TGG + Chr4:51988539-51988558 MsG0480021006.01.T01:intron 40.0%
! GTCGGCTCTTAAAGTCTTAA+AGG - Chr4:51989082-51989101 None:intergenic 40.0%
! TAAATGTACCTCCTTTGAGG+GGG - Chr4:51986612-51986631 None:intergenic 40.0%
! TATGTTTGGATGGAGGGTTT+TGG + Chr4:51987305-51987324 MsG0480021006.01.T01:intron 40.0%
! TTCCACCGTGCAAATTTTAG+GGG + Chr4:51988700-51988719 MsG0480021006.01.T01:intron 40.0%
!! AACTTTGAGGCGTAAATCTG+GGG - Chr4:51988664-51988683 None:intergenic 40.0%
!! AATCTGCCACCATTTTAAGG+AGG - Chr4:51988834-51988853 None:intergenic 40.0%
!! AATGTTGCTTCTGGACGTTT+TGG + Chr4:51986851-51986870 MsG0480021006.01.T01:intron 40.0%
!! ATAACGGACTAGAGTGTGTT+TGG - Chr4:51989704-51989723 None:intergenic 40.0%
!! ATGTTGCTTCTGGACGTTTT+GGG + Chr4:51986852-51986871 MsG0480021006.01.T01:intron 40.0%
!! ATTCATCGATCGGTTTTCAG+TGG + Chr4:51987204-51987223 MsG0480021006.01.T01:intron 40.0%
!! CAAACTTTGAGGCGTAAATC+TGG - Chr4:51988666-51988685 None:intergenic 40.0%
!! TTCTGGAGGAGGTTTTTGAA+GGG - Chr4:51987491-51987510 None:intergenic 40.0%
!! TTTCTGGAGGAGGTTTTTGA+AGG - Chr4:51987492-51987511 None:intergenic 40.0%
AAAACACCCTTAAGCTCTCC+AGG + Chr4:51987509-51987528 MsG0480021006.01.T01:intron 45.0%
AACCCCTAAAATTTGCACGG+TGG - Chr4:51988705-51988724 None:intergenic 45.0%
AAGGGAGCCGTTATAGACAT+TGG - Chr4:51987168-51987187 None:intergenic 45.0%
AAGTTGCCCTGGACAACTTA+TGG + Chr4:51989430-51989449 MsG0480021006.01.T01:intron 45.0%
AATGAAACCACCAACGGGAA+AGG - Chr4:51987187-51987206 None:intergenic 45.0%
AATGAGTGAACCTGCCAAAG+GGG - Chr4:51989142-51989161 None:intergenic 45.0%
ATGAAACCACCAACGGGAAA+GGG - Chr4:51987186-51987205 None:intergenic 45.0%
ATGAAGCCATGAAAGGGGAA+AGG - Chr4:51988394-51988413 None:intergenic 45.0%
CAAATGAGTGAACCTGCCAA+AGG - Chr4:51989144-51989163 None:intergenic 45.0%
CCCTCTGTAACTCTTCATTC+TGG + Chr4:51989744-51989763 MsG0480021006.01.T01:intron 45.0%
CGATGAATGAAACCACCAAC+GGG - Chr4:51987192-51987211 None:intergenic 45.0%
CTTCTTCCACACTTGAGCTA+GGG + Chr4:51986353-51986372 MsG0480021006.01.T01:five_prime_UTR 45.0%
GAAACACTTGTGAGACCGTT+TGG - Chr4:51989519-51989538 None:intergenic 45.0%
GATAAACCCTAGCTCAAGTG+TGG - Chr4:51986362-51986381 None:intergenic 45.0%
GCCAGAATGAAGAGTTACAG+AGG - Chr4:51989748-51989767 None:intergenic 45.0%
GTAGGGTATGTTTGGATGGA+GGG + Chr4:51987299-51987318 MsG0480021006.01.T01:intron 45.0%
GTTACGACGTAGGGTATGTT+TGG + Chr4:51987291-51987310 MsG0480021006.01.T01:intron 45.0%
TCTTCTTCCACACTTGAGCT+AGG + Chr4:51986352-51986371 MsG0480021006.01.T01:five_prime_UTR 45.0%
TGAAGCCATGAAAGGGGAAA+GGG - Chr4:51988393-51988412 None:intergenic 45.0%
TGTTATGACTTGAGCCCACA+AGG + Chr4:51989237-51989256 MsG0480021006.01.T01:intron 45.0%
! AAATGTACCTCCTTTGAGGG+GGG - Chr4:51986611-51986630 None:intergenic 45.0%
! AATCTTGAGTTGCAGCTCCT+TGG - Chr4:51990091-51990110 None:intergenic 45.0%
! GATTTGGAGCTGATCGATCA+TGG - Chr4:51986514-51986533 None:intergenic 45.0%
!! AGGAGGTTTTTGAAGGGTTC+TGG - Chr4:51987485-51987504 None:intergenic 45.0%
!! AGGTTTCCTCTTGCTTTTGC+AGG - Chr4:51989998-51990017 None:intergenic 45.0%
!! GACATTGGCTCTTATAGAGG+TGG - Chr4:51987153-51987172 None:intergenic 45.0%
!! GCTATTTTCAGAAGTTGCCC+TGG + Chr4:51989419-51989438 MsG0480021006.01.T01:intron 45.0%
!! GGTTTCCTCTTGCTTTTGCA+GGG - Chr4:51989997-51990016 None:intergenic 45.0%
!!! ACTAGTCTTTTGGGTTCTCC+TGG - Chr4:51987530-51987549 None:intergenic 45.0%
!!! AGCTTAAGGGTGTTTTCTGG+AGG - Chr4:51987505-51987524 None:intergenic 45.0%
!!! GAGAGCTTAAGGGTGTTTTC+TGG - Chr4:51987508-51987527 None:intergenic 45.0%
!!! GGTTTTTGAAGGGTTCTGGA+TGG - Chr4:51987481-51987500 None:intergenic 45.0%
!!! GTGCTGTTTTTCGGTACCTT+TGG + Chr4:51988166-51988185 MsG0480021006.01.T01:intron 45.0%
!!! TTAAGGGTGTTTTCTGGAGG+AGG - Chr4:51987502-51987521 None:intergenic 45.0%
!!! TTTGGATGGAGGGTTTTGGA+GGG + Chr4:51987309-51987328 MsG0480021006.01.T01:intron 45.0%
AACCTCACCTGTCACGGATT+TGG - Chr4:51986530-51986549 None:intergenic 50.0%
ATACAGAGAGGGCTGCCTAT+AGG - Chr4:51987245-51987264 None:intergenic 50.0%
ATACTACGGCTTTCACCTGC+TGG + Chr4:51989104-51989123 MsG0480021006.01.T01:intron 50.0%
ATCAGCTCCAAATCCGTGAC+AGG + Chr4:51986520-51986539 MsG0480021006.01.T01:CDS 50.0%
CGACGTAGGGTATGTTTGGA+TGG + Chr4:51987295-51987314 MsG0480021006.01.T01:intron 50.0%
CGTAGGGTATGTTTGGATGG+AGG + Chr4:51987298-51987317 MsG0480021006.01.T01:intron 50.0%
CTCTGCACATCTTCGAACAC+AGG - Chr4:51990018-51990037 None:intergenic 50.0%
GAGACCGTTTGGGAGAACTA+AGG - Chr4:51989508-51989527 None:intergenic 50.0%
GGTGGTATTCCTTTCCCCTT+TGG + Chr4:51989125-51989144 MsG0480021006.01.T01:intron 50.0%
GGTTCTCCTGGAGAGCTTAA+GGG - Chr4:51987518-51987537 None:intergenic 50.0%
GTATTCCTTTCCCCTTTGGC+AGG + Chr4:51989129-51989148 MsG0480021006.01.T01:intron 50.0%
TTTCTGTTACCCCCCCTCAA+AGG + Chr4:51986598-51986617 MsG0480021006.01.T01:intron 50.0%
TTTGGGAACCTCACCTGTCA+CGG - Chr4:51986536-51986555 None:intergenic 50.0%
! AATGTACCTCCTTTGAGGGG+GGG - Chr4:51986610-51986629 None:intergenic 50.0%
! ACTAGTCTATGGGCTCGACT+CGG - Chr4:51987059-51987078 None:intergenic 50.0%
! ACTCTATGCGTGTTGGCATG+AGG + Chr4:51990051-51990070 MsG0480021006.01.T01:CDS 50.0%
! CTGAAGCACTCTATGCGTGT+TGG + Chr4:51990044-51990063 MsG0480021006.01.T01:CDS 50.0%
!! AGGTTTGCTGAGCTCAACCA+AGG + Chr4:51990071-51990090 MsG0480021006.01.T01:CDS 50.0%
!! CATGAAAGCATCTCTCCACC+AGG - Chr4:51989947-51989966 None:intergenic 50.0%
!! GTTTGGATGGAGGGTTTTGG+AGG + Chr4:51987308-51987327 MsG0480021006.01.T01:intron 50.0%
!! TGAAGGGTTCTGGATGGCTA+AGG - Chr4:51987475-51987494 None:intergenic 50.0%
!!! TTGGATGGAGGGTTTTGGAG+GGG + Chr4:51987310-51987329 MsG0480021006.01.T01:intron 50.0%
AGAGAGGGCTGCCTATAGGT+TGG - Chr4:51987241-51987260 None:intergenic 55.0%
ATAACGGCTCCCTTTCCCGT+TGG + Chr4:51987174-51987193 MsG0480021006.01.T01:intron 55.0%
CTCCAAATCCGTGACAGGTG+AGG + Chr4:51986525-51986544 MsG0480021006.01.T01:intron 55.0%
GGGAAAGGAATACCACCAGC+AGG - Chr4:51989122-51989141 None:intergenic 55.0%
GGGTTCTCCTGGAGAGCTTA+AGG - Chr4:51987519-51987538 None:intergenic 55.0%
GTGAACCTGCCAAAGGGGAA+AGG - Chr4:51989137-51989156 None:intergenic 55.0%
CTACGGCTTTCACCTGCTGG+TGG + Chr4:51989107-51989126 MsG0480021006.01.T01:intron 60.0%
CTGTTACCCCCCCTCAAAGG+AGG + Chr4:51986601-51986620 MsG0480021006.01.T01:intron 60.0%
!!! GATGGAGGGTTTTGGAGGGG+AGG + Chr4:51987313-51987332 MsG0480021006.01.T01:intron 60.0%
ACGGCTCCCTTTCCCGTTGG+TGG + Chr4:51987177-51987196 MsG0480021006.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 51986332 51990301 51986332 ID=MsG0480021006.01;Name=MsG0480021006.01
Chr4 mRNA 51986332 51990301 51986332 ID=MsG0480021006.01.T01;Parent=MsG0480021006.01;Name=MsG0480021006.01.T01;_AED=0.48;_eAED=0.48;_QI=115|1|1|1|1|1|2|189|93
Chr4 exon 51986332 51986541 51986332 ID=MsG0480021006.01.T01:exon:7879;Parent=MsG0480021006.01.T01
Chr4 exon 51989926 51990301 51989926 ID=MsG0480021006.01.T01:exon:7880;Parent=MsG0480021006.01.T01
Chr4 five_prime_UTR 51986332 51986446 51986332 ID=MsG0480021006.01.T01:five_prime_utr;Parent=MsG0480021006.01.T01
Chr4 CDS 51986447 51986541 51986447 ID=MsG0480021006.01.T01:cds;Parent=MsG0480021006.01.T01
Chr4 CDS 51989926 51990112 51989926 ID=MsG0480021006.01.T01:cds;Parent=MsG0480021006.01.T01
Chr4 three_prime_UTR 51990113 51990301 51990113 ID=MsG0480021006.01.T01:three_prime_utr;Parent=MsG0480021006.01.T01
Gene Sequence

>MsG0480021006.01.T01

ATGGACAAAAGCATGATTGCTGATATGGAAAATCTTCCAGAGGCAGATAAACAAAGAATGGCTACCATGATCGATCAGCTCCAAATCCGTGACAGCCTGAGAATGTATAATAACCTGGTGGAGAGATGCTTTCATGATTGTGTGGATACATTTAAGCATAAATCCCTGCAAAAGCAAGAGGAAACCTGTGTTCGAAGATGTGCAGAGAAATTTCTGAAGCACTCTATGCGTGTTGGCATGAGGTTTGCTGAGCTCAACCAAGGAGCTGCAACTCAAGATTGA

Protein sequence

>MsG0480021006.01.T01

MDKSMIADMENLPEADKQRMATMIDQLQIRDSLRMYNNLVERCFHDCVDTFKHKSLQKQEETCVRRCAEKFLKHSMRVGMRFAELNQGAATQD*