Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032005.01.T01 | XP_024633292.1 | 94.366 | 71 | 4 | 0 | 23 | 93 | 42 | 112 | 1.34E-39 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032005.01.T01 | A0A072V3X9 | 94.366 | 71 | 4 | 0 | 23 | 93 | 42 | 112 | 6.39e-40 | 143 |
| MsG0680032005.01.T01 | A0A072VEZ7 | 94.366 | 71 | 4 | 0 | 23 | 93 | 42 | 112 | 1.40e-39 | 143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000209.01 | MsG0680032005.01 | 0.816985 | 4.169891e-52 | 2.999484e-49 |
| MsG0180000334.01 | MsG0680032005.01 | 0.802583 | 5.237208e-49 | 2.574918e-46 |
| MsG0180000335.01 | MsG0680032005.01 | 0.801480 | 8.827134e-49 | 4.220030e-46 |
| MsG0180000835.01 | MsG0680032005.01 | 0.821861 | 3.222833e-53 | 2.653653e-50 |
| MsG0180004481.01 | MsG0680032005.01 | 0.835344 | 1.772432e-56 | 2.161551e-53 |
| MsG0180004482.01 | MsG0680032005.01 | 0.827845 | 1.249115e-54 | 1.220282e-51 |
| MsG0180004509.01 | MsG0680032005.01 | 0.819493 | 1.128335e-52 | 8.696531e-50 |
| MsG0180005334.01 | MsG0680032005.01 | 0.811228 | 7.776375e-51 | 4.787038e-48 |
| MsG0180005575.01 | MsG0680032005.01 | 0.816555 | 5.207322e-52 | 3.701476e-49 |
| MsG0280006299.01 | MsG0680032005.01 | 0.815589 | 8.554724e-52 | 5.922695e-49 |
| MsG0280011339.01 | MsG0680032005.01 | 0.800057 | 1.722842e-48 | 7.944820e-46 |
| MsG0280011388.01 | MsG0680032005.01 | 0.802485 | 5.487250e-49 | 2.691092e-46 |
| MsG0380013085.01 | MsG0680032005.01 | 0.803449 | 3.467065e-49 | 1.742810e-46 |
| MsG0380013834.01 | MsG0680032005.01 | 0.815585 | 8.574082e-52 | 5.935269e-49 |
| MsG0680032005.01 | MsG0680035306.01 | 0.814380 | 1.586601e-51 | 1.062980e-48 |
| MsG0680032005.01 | MsG0680035346.01 | 0.804494 | 2.102489e-49 | 1.085587e-46 |
| MsG0680032005.01 | MsG0680035475.01 | 0.808900 | 2.467019e-50 | 1.427718e-47 |
| MsG0680032005.01 | MsG0680035876.01 | 0.804559 | 2.038261e-49 | 1.054204e-46 |
| MsG0680032005.01 | MsG0680035888.01 | 0.829488 | 5.005420e-55 | 5.130249e-52 |
| MsG0680032005.01 | MsG0780036477.01 | 0.807883 | 4.066574e-50 | 2.291320e-47 |
| MsG0680032005.01 | MsG0780037240.01 | 0.802200 | 6.280172e-49 | 3.057607e-46 |
| MsG0680032005.01 | MsG0780038603.01 | 0.807672 | 4.507562e-50 | 2.525942e-47 |
| MsG0680032005.01 | MsG0780040057.01 | 0.801322 | 9.512250e-49 | 4.529398e-46 |
| MsG0680032005.01 | MsG0780040841.01 | 0.801529 | 8.626586e-49 | 4.129214e-46 |
| MsG0680032005.01 | MsG0880042518.01 | 0.800129 | 1.665413e-48 | 7.694110e-46 |
| MsG0680032005.01 | MsG0880042519.01 | 0.807643 | 4.571871e-50 | 2.560028e-47 |
| MsG0680032005.01 | MsG0880044975.01 | 0.800521 | 1.386211e-48 | 6.468154e-46 |
| MsG0680032005.01 | MsG0880045145.01 | 0.818844 | 1.585779e-52 | 1.200456e-49 |
| MsG0680032005.01 | MsG0880045181.01 | 0.901163 | 3.536399e-78 | 4.718814e-74 |
| MsG0680032005.01 | MsG0880045736.01 | 0.815357 | 9.636414e-52 | 6.629070e-49 |
| MsG0680032005.01 | MsG0880047473.01 | 0.813787 | 2.144884e-51 | 1.414014e-48 |
| MsG0480018894.01 | MsG0680032005.01 | 0.803243 | 3.825999e-49 | 1.913015e-46 |
| MsG0480019206.01 | MsG0680032005.01 | 0.809629 | 1.721377e-50 | 1.015916e-47 |
| MsG0480020780.01 | MsG0680032005.01 | 0.808175 | 3.523099e-50 | 2.000678e-47 |
| MsG0480021464.01 | MsG0680032005.01 | 0.817217 | 3.698630e-52 | 2.677267e-49 |
| MsG0480021724.01 | MsG0680032005.01 | 0.810639 | 1.042841e-50 | 6.319930e-48 |
| MsG0480022164.01 | MsG0680032005.01 | 0.810854 | 9.368935e-51 | 5.710845e-48 |
| MsG0480022696.01 | MsG0680032005.01 | 0.809398 | 1.929509e-50 | 1.131710e-47 |
| MsG0480022855.01 | MsG0680032005.01 | 0.804542 | 2.054973e-49 | 1.062358e-46 |
| MsG0480022960.01 | MsG0680032005.01 | 0.802519 | 5.397784e-49 | 2.649469e-46 |
| MsG0480023221.01 | MsG0680032005.01 | 0.800792 | 1.220391e-48 | 5.733575e-46 |
| MsG0480023600.01 | MsG0680032005.01 | 0.801984 | 6.956506e-49 | 3.368302e-46 |
| MsG0480023707.01 | MsG0680032005.01 | 0.804114 | 2.523517e-49 | 1.290356e-46 |
| MsG0580024197.01 | MsG0680032005.01 | 0.804058 | 2.591396e-49 | 1.323229e-46 |
| MsG0580026718.01 | MsG0680032005.01 | 0.800320 | 1.522879e-48 | 7.069986e-46 |
| MsG0580027361.01 | MsG0680032005.01 | 0.812944 | 3.284675e-51 | 2.116425e-48 |
| MsG0280007527.01 | MsG0680032005.01 | 0.814297 | 1.655059e-51 | 1.106347e-48 |
| MsG0280009578.01 | MsG0680032005.01 | 0.803705 | 3.068922e-49 | 1.552755e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032005.01.T01 | MTR_2g021040 | 94.366 | 71 | 4 | 0 | 23 | 93 | 42 | 112 | 1.62e-43 | 143 |
| MsG0680032005.01.T01 | MTR_2g021040 | 94.366 | 71 | 4 | 0 | 23 | 93 | 42 | 112 | 3.54e-43 | 143 |
| MsG0680032005.01.T01 | MTR_2g021040 | 94.366 | 71 | 4 | 0 | 23 | 93 | 42 | 112 | 6.75e-43 | 142 |
| MsG0680032005.01.T01 | MTR_0003s0650 | 73.973 | 73 | 17 | 2 | 23 | 93 | 37 | 109 | 4.26e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032005.01.T01 | AT5G18940 | 68.000 | 75 | 23 | 1 | 23 | 97 | 42 | 115 | 1.84e-29 | 108 |
| MsG0680032005.01.T01 | AT5G18940 | 68.000 | 75 | 23 | 1 | 23 | 97 | 42 | 115 | 1.92e-29 | 107 |
Find 31 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGAGAACTATGCTTTC+TGG | 0.269593 | 6:+31804208 | MsG0680032005.01.T01:CDS |
| CGTGTCAAGAGCGGGGTTCT+TGG | 0.312982 | 6:+31804620 | MsG0680032005.01.T01:three_prime_UTR |
| TCTTGAACAATACTATAGTA+TGG | 0.338598 | 6:+31804768 | MsG0680032005.01.T01:three_prime_UTR |
| ATTCACAAGTTGCCTATACT+TGG | 0.363293 | 6:+31804313 | MsG0680032005.01.T01:CDS |
| TACTTTATTGTAGGCATTAG+AGG | 0.369327 | 6:+31804165 | MsG0680032005.01.T01:intron |
| CCTTCTAATCGCACTATGTA+TGG | 0.370960 | 6:+31804818 | MsG0680032005.01.T01:three_prime_UTR |
| CCATACATAGTGCGATTAGA+AGG | 0.384710 | 6:-31804818 | None:intergenic |
| TCAAGAAAGTTAGTAAAAGA+AGG | 0.425433 | 6:-31804751 | None:intergenic |
| CTTACTTCCCATCCAAGTAT+AGG | 0.450135 | 6:-31804325 | None:intergenic |
| ATCAGAACCGAATTTAGATC+TGG | 0.456620 | 6:+31804240 | MsG0680032005.01.T01:CDS |
| CAAGAAATCGTGTCAAGAGC+GGG | 0.461491 | 6:+31804612 | MsG0680032005.01.T01:three_prime_UTR |
| AGAACTATGCTTTCTGGAGA+TGG | 0.464715 | 6:+31804214 | MsG0680032005.01.T01:CDS |
| TGTGAAACCAGATCTAAATT+CGG | 0.477833 | 6:-31804247 | None:intergenic |
| TGCAGTAGATTCAGCTTCAC+TGG | 0.486587 | 6:+31803328 | MsG0680032005.01.T01:CDS |
| TACTAATTGAAATGTTGTGC+AGG | 0.493586 | 6:+31803273 | None:intergenic |
| ACAAGTTGCCTATACTTGGA+TGG | 0.498032 | 6:+31804317 | MsG0680032005.01.T01:CDS |
| GAAAGGATTTAGTCCACTGT+TGG | 0.511448 | 6:+31804431 | MsG0680032005.01.T01:CDS |
| AGATCTGGTTTCACAGCTTG+TGG | 0.516259 | 6:+31804255 | MsG0680032005.01.T01:CDS |
| CAAGTTGCCTATACTTGGAT+GGG | 0.523597 | 6:+31804318 | MsG0680032005.01.T01:CDS |
| ATTTGATGATCTTCATCATG+TGG | 0.570148 | 6:-31804531 | None:intergenic |
| CTCGTATCACTCTTCACCCA+CGG | 0.572581 | 6:-31804647 | None:intergenic |
| GAGTGAACACGGTTGATGCT+TGG | 0.608303 | 6:-31804574 | None:intergenic |
| CGGGGTTCTTGGAACACCGT+GGG | 0.615525 | 6:+31804631 | MsG0680032005.01.T01:three_prime_UTR |
| TCTGGTTTCACAGCTTGTGG+AGG | 0.620384 | 6:+31804258 | MsG0680032005.01.T01:CDS |
| TCAAGAAATCGTGTCAAGAG+CGG | 0.632895 | 6:+31804611 | MsG0680032005.01.T01:three_prime_UTR |
| AAGAAATCGTGTCAAGAGCG+GGG | 0.665713 | 6:+31804613 | MsG0680032005.01.T01:three_prime_UTR |
| GCTTGTGGAGGAAATCTGCA+AGG | 0.666944 | 6:+31804270 | MsG0680032005.01.T01:CDS |
| TCAACAATATCGTCCAACAG+TGG | 0.680311 | 6:-31804444 | None:intergenic |
| GCGGGGTTCTTGGAACACCG+TGG | 0.682296 | 6:+31804630 | MsG0680032005.01.T01:three_prime_UTR |
| CGTGGGTGAAGAGTGATACG+AGG | 0.709427 | 6:+31804648 | MsG0680032005.01.T01:three_prime_UTR |
| TGTGGAGGAAATCTGCAAGG+AGG | 0.743747 | 6:+31804273 | MsG0680032005.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTACTCATAAATATA+TGG | + | Chr6:31803869-31803888 | MsG0680032005.01.T01:intron | 10.0% |
| !!! | ATACATATCATTACTATTTT+TGG | + | Chr6:31803427-31803446 | MsG0680032005.01.T01:intron | 15.0% |
| !!! | TACATATCATTACTATTTTT+GGG | + | Chr6:31803428-31803447 | MsG0680032005.01.T01:intron | 15.0% |
| !! | AAATATTGTACATAAAAGCA+AGG | - | Chr6:31803679-31803698 | None:intergenic | 20.0% |
| !!! | AACACTATCAAGATTTTTAT+TGG | - | Chr6:31803739-31803758 | None:intergenic | 20.0% |
| !!! | ATTTCACTTCTTTTCATTTT+GGG | + | Chr6:31803394-31803413 | MsG0680032005.01.T01:intron | 20.0% |
| !!! | TAGTTATTTTTAGTTTGTGA+AGG | + | Chr6:31804499-31804518 | MsG0680032005.01.T01:exon | 20.0% |
| ! | AATATATGGAAAATGCTTGT+TGG | + | Chr6:31803883-31803902 | MsG0680032005.01.T01:intron | 25.0% |
| ! | CTGCAATAAAGTGATAATAA+CGG | - | Chr6:31803373-31803392 | None:intergenic | 25.0% |
| ! | GAAGAATAAAAATAGTGTAG+TGG | + | Chr6:31804670-31804689 | MsG0680032005.01.T01:three_prime_UTR | 25.0% |
| ! | TCAAGAAAGTTAGTAAAAGA+AGG | - | Chr6:31804754-31804773 | None:intergenic | 25.0% |
| ! | TCTTGAACAATACTATAGTA+TGG | + | Chr6:31804768-31804787 | MsG0680032005.01.T01:three_prime_UTR | 25.0% |
| ! | TGCAATAAAGTGATAATAAC+GGG | - | Chr6:31803372-31803391 | None:intergenic | 25.0% |
| ! | TTGTTGAAGTCTGAAAAATT+TGG | + | Chr6:31804460-31804479 | MsG0680032005.01.T01:CDS | 25.0% |
| !! | CATTTCACTTCTTTTCATTT+TGG | + | Chr6:31803393-31803412 | MsG0680032005.01.T01:intron | 25.0% |
| !! | TGCATTTTACAACTTAATGT+TGG | + | Chr6:31803506-31803525 | MsG0680032005.01.T01:intron | 25.0% |
| !!! | ATTTTTAGTTTGTGAAGGTT+CGG | + | Chr6:31804504-31804523 | MsG0680032005.01.T01:three_prime_UTR | 25.0% |
| !!! | TGCTTGTTTTACTTTATTGT+AGG | + | Chr6:31804156-31804175 | MsG0680032005.01.T01:intron | 25.0% |
| ATATCACTGGAACATATCTA+TGG | - | Chr6:31804086-31804105 | None:intergenic | 30.0% | |
| TACTTTATTGTAGGCATTAG+AGG | + | Chr6:31804165-31804184 | MsG0680032005.01.T01:intron | 30.0% | |
| TCTTGATCTATCAGTACTAT+TGG | - | Chr6:31803768-31803787 | None:intergenic | 30.0% | |
| TGTGAAACCAGATCTAAATT+CGG | - | Chr6:31804250-31804269 | None:intergenic | 30.0% | |
| TTAACAAAAGCTCAGATTCT+TGG | - | Chr6:31803614-31803633 | None:intergenic | 30.0% | |
| ! | AAAGAAAGGCATAATATCAC+TGG | - | Chr6:31804099-31804118 | None:intergenic | 30.0% |
| ! | AAGTCTGAAAAATTTGGTGA+AGG | + | Chr6:31804466-31804485 | MsG0680032005.01.T01:CDS | 30.0% |
| ! | ATTTGATGATCTTCATCATG+TGG | - | Chr6:31804534-31804553 | None:intergenic | 30.0% |
| !! | AATTTTGATACAGGCTAGAA+AGG | + | Chr6:31804414-31804433 | MsG0680032005.01.T01:intron | 30.0% |
| !! | GAGTAATTTTAGTGCTTGTT+TGG | - | Chr6:31803860-31803879 | None:intergenic | 30.0% |
| !!! | TTTTTAGTTTGTGAAGGTTC+GGG | + | Chr6:31804505-31804524 | MsG0680032005.01.T01:three_prime_UTR | 30.0% |
| ACAATGAGAACTATGCTTTC+TGG | + | Chr6:31804208-31804227 | MsG0680032005.01.T01:CDS | 35.0% | |
| AGCAACTGCAAGTAAAAGAA+AGG | - | Chr6:31804113-31804132 | None:intergenic | 35.0% | |
| ATCAGAACCGAATTTAGATC+TGG | + | Chr6:31804240-31804259 | MsG0680032005.01.T01:CDS | 35.0% | |
| ATTCACAAGTTGCCTATACT+TGG | + | Chr6:31804313-31804332 | MsG0680032005.01.T01:CDS | 35.0% | |
| TCTATCAGTACTATTGGCAT+TGG | - | Chr6:31803762-31803781 | None:intergenic | 35.0% | |
| ! | GTCTTTTATTCGAGTGAACA+CGG | - | Chr6:31804588-31804607 | None:intergenic | 35.0% |
| !! | TCGCACTATGTATGGTTTTA+TGG | + | Chr6:31804826-31804845 | MsG0680032005.01.T01:three_prime_UTR | 35.0% |
| !! | TCTTTCAAGTTAATACAGCG+TGG | + | Chr6:31803833-31803852 | MsG0680032005.01.T01:intron | 35.0% |
| ACAAGTTGCCTATACTTGGA+TGG | + | Chr6:31804317-31804336 | MsG0680032005.01.T01:CDS | 40.0% | |
| ACCCATCTAAAAAGACCAGA+GGG | - | Chr6:31803653-31803672 | None:intergenic | 40.0% | |
| ATGTGTCATCAGTTTGTCGT+GGG | + | Chr6:31804013-31804032 | MsG0680032005.01.T01:intron | 40.0% | |
| CAAGTTGCCTATACTTGGAT+GGG | + | Chr6:31804318-31804337 | MsG0680032005.01.T01:CDS | 40.0% | |
| CCATACATAGTGCGATTAGA+AGG | - | Chr6:31804821-31804840 | None:intergenic | 40.0% | |
| CCTTCTAATCGCACTATGTA+TGG | + | Chr6:31804818-31804837 | MsG0680032005.01.T01:three_prime_UTR | 40.0% | |
| CTTACTTCCCATCCAAGTAT+AGG | - | Chr6:31804328-31804347 | None:intergenic | 40.0% | |
| GAAAGGATTTAGTCCACTGT+TGG | + | Chr6:31804431-31804450 | MsG0680032005.01.T01:CDS | 40.0% | |
| GATCAAGACTCAGATTCTGA+TGG | + | Chr6:31803780-31803799 | MsG0680032005.01.T01:intron | 40.0% | |
| TACCCATCTAAAAAGACCAG+AGG | - | Chr6:31803654-31803673 | None:intergenic | 40.0% | |
| TACTCCTTATATGTACCCTC+TGG | + | Chr6:31803635-31803654 | MsG0680032005.01.T01:intron | 40.0% | |
| TACTTGCAGTTGCTCTACAT+TGG | + | Chr6:31804119-31804138 | MsG0680032005.01.T01:intron | 40.0% | |
| TATGTGTCATCAGTTTGTCG+TGG | + | Chr6:31804012-31804031 | MsG0680032005.01.T01:intron | 40.0% | |
| TCAACAATATCGTCCAACAG+TGG | - | Chr6:31804447-31804466 | None:intergenic | 40.0% | |
| TCAAGAAATCGTGTCAAGAG+CGG | + | Chr6:31804611-31804630 | MsG0680032005.01.T01:three_prime_UTR | 40.0% | |
| ! | AAGACCAGAGGGTACATATA+AGG | - | Chr6:31803642-31803661 | None:intergenic | 40.0% |
| ! | AAGTGCCGTGTTTCATCTAA+GGG | - | Chr6:31803955-31803974 | None:intergenic | 40.0% |
| ! | AGAACTATGCTTTCTGGAGA+TGG | + | Chr6:31804214-31804233 | MsG0680032005.01.T01:CDS | 40.0% |
| ! | AGTTGCTCTACATTGGTTAC+TGG | + | Chr6:31804126-31804145 | MsG0680032005.01.T01:intron | 40.0% |
| ! | ATGCATGCAGTTGACTTAAC+TGG | + | Chr6:31804371-31804390 | MsG0680032005.01.T01:intron | 40.0% |
| ! | TTTGTGCTGGTGTAAGATAG+TGG | + | Chr6:31803563-31803582 | MsG0680032005.01.T01:intron | 40.0% |
| !! | AAAGTGCCGTGTTTCATCTA+AGG | - | Chr6:31803956-31803975 | None:intergenic | 40.0% |
| !! | ACCCTCTGGTCTTTTTAGAT+GGG | + | Chr6:31803649-31803668 | MsG0680032005.01.T01:intron | 40.0% |
| !! | GGGTGCATGAATTTTGATAC+AGG | + | Chr6:31804405-31804424 | MsG0680032005.01.T01:intron | 40.0% |
| !! | TACCCTCTGGTCTTTTTAGA+TGG | + | Chr6:31803648-31803667 | MsG0680032005.01.T01:intron | 40.0% |
| AAGAAATCGTGTCAAGAGCG+GGG | + | Chr6:31804613-31804632 | MsG0680032005.01.T01:three_prime_UTR | 45.0% | |
| ACTTAACTGGTTGCTCATCG+TGG | + | Chr6:31804384-31804403 | MsG0680032005.01.T01:intron | 45.0% | |
| AGCTGTGGTGTAAAGCAGTA+AGG | - | Chr6:31803462-31803481 | None:intergenic | 45.0% | |
| CAAGAAATCGTGTCAAGAGC+GGG | + | Chr6:31804612-31804631 | MsG0680032005.01.T01:three_prime_UTR | 45.0% | |
| CTAATAAGCTCGACTAGCGA+CGG | + | Chr6:31803914-31803933 | MsG0680032005.01.T01:intron | 45.0% | |
| CTTAACTGGTTGCTCATCGT+GGG | + | Chr6:31804385-31804404 | MsG0680032005.01.T01:intron | 45.0% | |
| GTCTGTGTCTAAGTTTGTGC+TGG | + | Chr6:31803550-31803569 | MsG0680032005.01.T01:intron | 45.0% | |
| TGCAGTAGATTCAGCTTCAC+TGG | + | Chr6:31803328-31803347 | MsG0680032005.01.T01:CDS | 45.0% | |
| ! | AGATCTGGTTTCACAGCTTG+TGG | + | Chr6:31804255-31804274 | MsG0680032005.01.T01:CDS | 45.0% |
| CTCGTATCACTCTTCACCCA+CGG | - | Chr6:31804650-31804669 | None:intergenic | 50.0% | |
| GCCGACCCTTAGATGAAACA+CGG | + | Chr6:31803947-31803966 | MsG0680032005.01.T01:intron | 50.0% | |
| GCCGTGTTTCATCTAAGGGT+CGG | - | Chr6:31803951-31803970 | None:intergenic | 50.0% | |
| GCTTGTGGAGGAAATCTGCA+AGG | + | Chr6:31804270-31804289 | MsG0680032005.01.T01:CDS | 50.0% | |
| TGTGGAGGAAATCTGCAAGG+AGG | + | Chr6:31804273-31804292 | MsG0680032005.01.T01:CDS | 50.0% | |
| ! | GAGTGAACACGGTTGATGCT+TGG | - | Chr6:31804577-31804596 | None:intergenic | 50.0% |
| ! | TCTGGTTTCACAGCTTGTGG+AGG | + | Chr6:31804258-31804277 | MsG0680032005.01.T01:CDS | 50.0% |
| CGTGGGTGAAGAGTGATACG+AGG | + | Chr6:31804648-31804667 | MsG0680032005.01.T01:three_prime_UTR | 55.0% | |
| GCACACGAGCTACACATGTG+TGG | - | Chr6:31803489-31803508 | None:intergenic | 55.0% | |
| ! | CACATGTGTGGTGTCAGCTG+TGG | - | Chr6:31803477-31803496 | None:intergenic | 55.0% |
| CGGGGTTCTTGGAACACCGT+GGG | + | Chr6:31804631-31804650 | MsG0680032005.01.T01:three_prime_UTR | 60.0% | |
| CGTGTCAAGAGCGGGGTTCT+TGG | + | Chr6:31804620-31804639 | MsG0680032005.01.T01:three_prime_UTR | 60.0% | |
| GCGGGGTTCTTGGAACACCG+TGG | + | Chr6:31804630-31804649 | MsG0680032005.01.T01:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 31803284 | 31804852 | 31803284 | ID=MsG0680032005.01;Name=MsG0680032005.01 |
| Chr6 | mRNA | 31803284 | 31804852 | 31803284 | ID=MsG0680032005.01.T01;Parent=MsG0680032005.01;Name=MsG0680032005.01.T01;_AED=0.41;_eAED=0.42;_QI=0|1|0.66|1|1|1|3|351|101 |
| Chr6 | exon | 31803284 | 31803349 | 31803284 | ID=MsG0680032005.01.T01:exon:15562;Parent=MsG0680032005.01.T01 |
| Chr6 | exon | 31804178 | 31804342 | 31804178 | ID=MsG0680032005.01.T01:exon:15563;Parent=MsG0680032005.01.T01 |
| Chr6 | exon | 31804427 | 31804852 | 31804427 | ID=MsG0680032005.01.T01:exon:15564;Parent=MsG0680032005.01.T01 |
| Chr6 | CDS | 31803284 | 31803349 | 31803284 | ID=MsG0680032005.01.T01:cds;Parent=MsG0680032005.01.T01 |
| Chr6 | CDS | 31804178 | 31804342 | 31804178 | ID=MsG0680032005.01.T01:cds;Parent=MsG0680032005.01.T01 |
| Chr6 | CDS | 31804427 | 31804501 | 31804427 | ID=MsG0680032005.01.T01:cds;Parent=MsG0680032005.01.T01 |
| Chr6 | three_prime_UTR | 31804502 | 31804852 | 31804502 | ID=MsG0680032005.01.T01:three_prime_utr;Parent=MsG0680032005.01.T01 |
| Gene Sequence |
| Protein sequence |
