AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004509.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004509.01.T01 MTR_1g081410 51.825 137 15 3 1 86 1 137 2.36e-30 105
MsG0180004509.01.T01 MTR_7g114640 48.529 136 20 3 1 86 1 136 3.34e-25 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004509.01.T01 AT3G04920 46.970 132 19 3 1 81 1 132 3.37e-25 92.0
MsG0180004509.01.T01 AT5G28060 44.697 132 22 3 1 81 1 132 3.99e-23 87.0
MsG0180004509.01.T01 AT3G04920 73.585 53 8 1 1 53 1 47 1.42e-18 74.7

Find 30 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAACAGAATTCTCAAAAT+TGG 0.248098 1:-78975512 MsG0180004508.01.T01:intron
CCTGTTTGTCATGAATTTCC+TGG 0.293677 1:-78972282 None:intergenic
TTGCTGTTGGTAGTTTCTTA+AGG 0.335656 1:+78975379 MsG0180004509.01.T01:CDS
CTAACAATCCACAATCAAAA+AGG 0.377651 1:-78975581 MsG0180004508.01.T01:intron
AAATGAAGGAAAGAAAGAAC+AGG 0.391792 1:+78975161 MsG0180004509.01.T01:CDS
TTGGACACATTTGCCCTCCC+TGG 0.411146 1:-78973422 MsG0180004508.01.T01:intron
CTTGGCAGCATCACCAGCCT+TGG 0.412083 1:-78975305 MsG0180004508.01.T01:intron
AAAACTCACAAATTGCTTCC+TGG 0.412532 1:-78972312 None:intergenic
GTCATTGATGTTCTTCATCC+AGG 0.419765 1:+78973404 MsG0180004509.01.T01:CDS
GCTGGTGATGCTGCCAAGGC+TGG 0.425056 1:+78975310 MsG0180004509.01.T01:CDS
CAACACTATAACCATGTAAA+CGG 0.433061 1:-78975637 MsG0180004508.01.T01:intron
TTCTCAAAATTGGTCACTGC+TGG 0.474339 1:-78975502 MsG0180004508.01.T01:intron
CCAGGAAATTCATGACAAAC+AGG 0.483747 1:+78972282 MsG0180004509.01.T01:CDS
TGACAAACAGGCTTCTCTCC+AGG 0.487847 1:+78972294 MsG0180004509.01.T01:CDS
GTAGAATGGACTTGATACTA+AGG 0.495750 1:+78975120 MsG0180004509.01.T01:intron
CAAGGCTGGTGATGCTGCCA+AGG 0.500785 1:+78975306 MsG0180004509.01.T01:CDS
GCTCAATAGAACCGTTTACA+TGG 0.504068 1:+78975626 MsG0180004509.01.T01:three_prime_UTR
AATCATAACCATGGCGGACA+AGG 0.511646 1:+78972244 None:intergenic
GAAGATCCGTGGAGTTAAGA+AGG 0.518538 1:+78975189 MsG0180004509.01.T01:CDS
ATACTAAGGTTGAAAAGTCA+AGG 0.557383 1:+78975134 MsG0180004509.01.T01:CDS
GCTTTACCTTCTTAACTCCA+CGG 0.569745 1:-78975195 MsG0180004508.01.T01:intron
TCATTGATGTTCTTCATCCA+GGG 0.571853 1:+78973405 MsG0180004509.01.T01:CDS
AAAGTCAAGGAAGCAAATGA+AGG 0.574321 1:+78975147 MsG0180004509.01.T01:CDS
TGTCACTGCCTTGTCCGCCA+TGG 0.587558 1:-78972252 None:intergenic
AGGGAGGGCAAATGTGTCCA+AGG 0.599653 1:+78973424 MsG0180004509.01.T01:CDS
TGATGTTCTTCATCCAGGGA+GGG 0.609379 1:+78973409 MsG0180004509.01.T01:CDS
AACAGGGCAAAGAAGATCCG+TGG 0.612698 1:+78975178 MsG0180004509.01.T01:CDS
AGGCAGTGACAATCAGAACC+AGG 0.646151 1:+78972264 MsG0180004509.01.T01:CDS
TTGATGTTCTTCATCCAGGG+AGG 0.668249 1:+78973408 MsG0180004509.01.T01:CDS
AATGAAGGAAAGAAAGAACA+GGG 0.674567 1:+78975162 MsG0180004509.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTACAAATTTAAATCAAT+AGG - Chr1:78975052-78975071 MsG0180004508.01.T01:intron 10.0%
!! AAATGATTGAAATTAAATGT+AGG - Chr1:78974719-78974738 MsG0180004508.01.T01:intron 15.0%
!! AATGATTGAAATTAAATGTA+GGG - Chr1:78974718-78974737 MsG0180004508.01.T01:intron 15.0%
!! ATATATAAAACAAGAAACAT+AGG - Chr1:78973736-78973755 MsG0180004508.01.T01:intron 15.0%
!! CTTGAAAAAAATAAATGAAT+AGG - Chr1:78974564-78974583 MsG0180004508.01.T01:intron 15.0%
!! GTATTATAAACTTATGATAT+TGG + Chr1:78973959-78973978 MsG0180004509.01.T01:intron 15.0%
!! TATCATATAAACTAGATATT+TGG + Chr1:78973164-78973183 MsG0180004509.01.T01:intron 15.0%
!!! ATATTATAGTTTTCTTTTCT+TGG + Chr1:78973541-78973560 MsG0180004509.01.T01:intron 15.0%
!!! GTTTTTATTTTAAATGGATT+AGG + Chr1:78973009-78973028 MsG0180004509.01.T01:intron 15.0%
!!! TTAAATAGTTTTTTCTAGAA+TGG + Chr1:78975415-78975434 MsG0180004509.01.T01:three_prime_UTR 15.0%
!! AAAAAACAAACAAATCCATT+TGG - Chr1:78974372-78974391 MsG0180004508.01.T01:intron 20.0%
!! AGTAAATTTAAATGGTAAAC+TGG + Chr1:78972952-78972971 MsG0180004509.01.T01:intron 20.0%
!! AGTTTACCATTTAAATTTAC+TGG - Chr1:78972953-78972972 MsG0180004508.01.T01:intron 20.0%
!! CAAATAAACCACAAAAAAAA+AGG - Chr1:78974238-78974257 MsG0180004508.01.T01:intron 20.0%
!! CAATTTCATACAGTATTATT+TGG + Chr1:78973857-78973876 MsG0180004509.01.T01:intron 20.0%
!! TACAAAACAATCAAAAGATT+TGG - Chr1:78973199-78973218 MsG0180004508.01.T01:intron 20.0%
!! TCTAAACCAGTAAATTTAAA+TGG + Chr1:78972944-78972963 MsG0180004509.01.T01:intron 20.0%
!! TCTATTACCAAACAATAATA+AGG - Chr1:78973773-78973792 MsG0180004508.01.T01:intron 20.0%
!! TTATGAAGAAATAGATAACA+AGG - Chr1:78972343-78972362 None:intergenic 20.0%
!! TTTAACAGAATTCTCAAAAT+TGG - Chr1:78975515-78975534 MsG0180004508.01.T01:intron 20.0%
!! TTTATTGCATTTCTATATGT+AGG + Chr1:78973609-78973628 MsG0180004509.01.T01:intron 20.0%
!! TTTGATCATTCCTTTATATT+TGG + Chr1:78973678-78973697 MsG0180004509.01.T01:intron 20.0%
!!! AATGGATTTGTTTGTTTTTT+CGG + Chr1:78974372-78974391 MsG0180004509.01.T01:intron 20.0%
!!! AGGGTTTTATATTATGTTAT+TGG + Chr1:78973334-78973353 MsG0180004509.01.T01:intron 20.0%
!!! GGTTTGGTTTTTATTTTAAA+TGG + Chr1:78973003-78973022 MsG0180004509.01.T01:intron 20.0%
!!! GTTTTTATTGAAAAAGGTTA+TGG - Chr1:78972482-78972501 None:intergenic 20.0%
!!! TAACCTTTTTCAATAAAAAC+CGG + Chr1:78972482-78972501 MsG0180004509.01.T01:intron 20.0%
!!! TCTGGTTTTTTTTGTTTTTT+GGG + Chr1:78972978-78972997 MsG0180004509.01.T01:intron 20.0%
!!! TTCTGGTTTTTTTTGTTTTT+TGG + Chr1:78972977-78972996 MsG0180004509.01.T01:intron 20.0%
! AAATACCAATTTAGTTGAAC+TGG + Chr1:78972540-78972559 MsG0180004509.01.T01:intron 25.0%
! AACATAAATGTTAACAACCA+GGG - Chr1:78974327-78974346 MsG0180004508.01.T01:intron 25.0%
! ACTGTTATTGAAAACATAAC+CGG - Chr1:78972504-78972523 None:intergenic 25.0%
! ATAGTGTGATTCAGATAATT+AGG + Chr1:78973232-78973251 MsG0180004509.01.T01:intron 25.0%
! ATATAGTCAGCCAAATATAA+AGG - Chr1:78973691-78973710 MsG0180004508.01.T01:intron 25.0%
! ATGTATGGTTATATGTAGAT+AGG + Chr1:78973448-78973467 MsG0180004509.01.T01:intron 25.0%
! ATTAGCATATAATCACAACT+AGG - Chr1:78973099-78973118 MsG0180004508.01.T01:intron 25.0%
! TAGTGTGATTCAGATAATTA+GGG + Chr1:78973233-78973252 MsG0180004509.01.T01:intron 25.0%
! TTAAACCAGTTCAACTAAAT+TGG - Chr1:78972548-78972567 None:intergenic 25.0%
! TTAGCATATAATCACAACTA+GGG - Chr1:78973098-78973117 MsG0180004508.01.T01:intron 25.0%
!! ATTTGAGATTTGGGATTAAA+GGG + Chr1:78972766-78972785 MsG0180004509.01.T01:intron 25.0%
!! CAAGAGAGTACATAATTATA+GGG - Chr1:78974823-78974842 MsG0180004508.01.T01:intron 25.0%
!! GATTATGCCTTATTATTGTT+TGG + Chr1:78973763-78973782 MsG0180004509.01.T01:intron 25.0%
!! GATTTTACAATGAAGGTTAT+TGG - Chr1:78972659-78972678 MsG0180004508.01.T01:CDS 25.0%
!! TCAAGAGAGTACATAATTAT+AGG - Chr1:78974824-78974843 MsG0180004508.01.T01:intron 25.0%
!! TCTTTTCTTCTATTGTAGAA+TGG + Chr1:78975106-78975125 MsG0180004509.01.T01:intron 25.0%
!! TGATTACCTTTTATTGTGTT+TGG + Chr1:78973989-78974008 MsG0180004509.01.T01:intron 25.0%
!!! AATAGTTTTTTCTAGAATGG+AGG + Chr1:78975418-78975437 MsG0180004509.01.T01:three_prime_UTR 25.0%
!!! CTATTTCTGTTAAATAGTTC+TGG + Chr1:78974649-78974668 MsG0180004509.01.T01:intron 25.0%
!!! CTTTCTAGCTTTCTAATTAA+AGG + Chr1:78973571-78973590 MsG0180004509.01.T01:intron 25.0%
!!! CTTTGAAACCTTTTTTTTTG+TGG + Chr1:78974227-78974246 MsG0180004509.01.T01:intron 25.0%
!!! GGATTAGGTTTTTCAAATAT+GGG + Chr1:78973024-78973043 MsG0180004509.01.T01:intron 25.0%
!!! GTCATTTTGTTATGATATCA+AGG + Chr1:78975351-78975370 MsG0180004509.01.T01:CDS 25.0%
!!! TAAATTTACTGGTTTAGAAC+CGG - Chr1:78972942-78972961 MsG0180004508.01.T01:intron 25.0%
!!! TAACCGGTTTTTATTGAAAA+AGG - Chr1:78972488-78972507 None:intergenic 25.0%
!!! TCTATCATGTTTTTATAGTG+TGG + Chr1:78973300-78973319 MsG0180004509.01.T01:intron 25.0%
!!! TGGATTAGGTTTTTCAAATA+TGG + Chr1:78973023-78973042 MsG0180004509.01.T01:intron 25.0%
!!! TTGTTTGTTTTTTCGGAATT+TGG + Chr1:78974379-78974398 MsG0180004509.01.T01:intron 25.0%
AAATGAAGGAAAGAAAGAAC+AGG + Chr1:78975161-78975180 MsG0180004509.01.T01:CDS 30.0%
AATGAAGGAAAGAAAGAACA+GGG + Chr1:78975162-78975181 MsG0180004509.01.T01:CDS 30.0%
ACATATAACCATACATACCT+TGG - Chr1:78973444-78973463 MsG0180004508.01.T01:intron 30.0%
ACGAGATCTGATTTCAATTA+GGG - Chr1:78972367-78972386 None:intergenic 30.0%
ACTAAATTCACAAGCAAATG+AGG - Chr1:78974530-78974549 MsG0180004508.01.T01:intron 30.0%
ATACTAAGGTTGAAAAGTCA+AGG + Chr1:78975134-78975153 MsG0180004509.01.T01:CDS 30.0%
ATAGTGTGGTTCAGATAATT+AGG + Chr1:78973314-78973333 MsG0180004509.01.T01:intron 30.0%
ATGTTAAAGTCGTGATTGTT+AGG - Chr1:78972610-78972629 MsG0180004508.01.T01:CDS 30.0%
ATTCAACTCCATTGTGATTA+GGG + Chr1:78972399-78972418 MsG0180004509.01.T01:intron 30.0%
CAACACTATAACCATGTAAA+CGG - Chr1:78975640-78975659 MsG0180004508.01.T01:intron 30.0%
CAACATAAATGTTAACAACC+AGG - Chr1:78974328-78974347 MsG0180004508.01.T01:intron 30.0%
CTAACAATCCACAATCAAAA+AGG - Chr1:78975584-78975603 MsG0180004508.01.T01:intron 30.0%
CTGGTTGTTAACATTTATGT+TGG + Chr1:78974326-78974345 MsG0180004509.01.T01:intron 30.0%
GAAACTCAACGTATATTGTA+TGG - Chr1:78973796-78973815 MsG0180004508.01.T01:intron 30.0%
GAACCAAAATACAGATGTTA+GGG + Chr1:78974165-78974184 MsG0180004509.01.T01:intron 30.0%
GATTCATCAACTACATTAAC+AGG - Chr1:78975027-78975046 MsG0180004508.01.T01:intron 30.0%
GATTGAAATTAAATGTAGGG+TGG - Chr1:78974715-78974734 MsG0180004508.01.T01:intron 30.0%
GTAGTTAGAGATAATTTAGC+TGG + Chr1:78974786-78974805 MsG0180004509.01.T01:intron 30.0%
TACGAGATCTGATTTCAATT+AGG - Chr1:78972368-78972387 None:intergenic 30.0%
TAGCATATAATCACAACTAG+GGG - Chr1:78973097-78973116 MsG0180004508.01.T01:intron 30.0%
TAGTGTGGTTCAGATAATTA+GGG + Chr1:78973315-78973334 MsG0180004509.01.T01:intron 30.0%
TATTCAACTCCATTGTGATT+AGG + Chr1:78972398-78972417 MsG0180004509.01.T01:intron 30.0%
TCAAATCATAAACACAACGA+CGG - Chr1:78972869-78972888 MsG0180004508.01.T01:intron 30.0%
TGAACCAAAATACAGATGTT+AGG + Chr1:78974164-78974183 MsG0180004509.01.T01:intron 30.0%
TTCACACCAAACACAATAAA+AGG - Chr1:78973998-78974017 MsG0180004508.01.T01:intron 30.0%
TTGAATACAAACAGTGGTTT+GGG - Chr1:78974066-78974085 MsG0180004508.01.T01:intron 30.0%
! ACCAGATCAATTTTATGGTT+CGG + Chr1:78972449-78972468 MsG0180004509.01.T01:intron 30.0%
! ATAACTCTTGTCCATCTTTT+TGG + Chr1:78973887-78973906 MsG0180004509.01.T01:intron 30.0%
! GATTTGAGATTTGGGATTAA+AGG + Chr1:78972765-78972784 MsG0180004509.01.T01:intron 30.0%
! GTTAATTCTGTCTTTTCTCT+TGG + Chr1:78974191-78974210 MsG0180004509.01.T01:intron 30.0%
! TATGTTTTCAATAACAGTCC+AGG + Chr1:78972506-78972525 MsG0180004509.01.T01:intron 30.0%
! TGTCTTTTCTCTTGGATAAT+TGG + Chr1:78974199-78974218 MsG0180004509.01.T01:intron 30.0%
! TTTGCTTGTAGTGTTGTTAT+TGG + Chr1:78974923-78974942 MsG0180004509.01.T01:intron 30.0%
!! CTTAATCTCCTTTTTGATTG+TGG + Chr1:78975573-78975592 MsG0180004509.01.T01:three_prime_UTR 30.0%
!! TATCAAGGTTATTTTGCTGT+TGG + Chr1:78975366-78975385 MsG0180004509.01.T01:CDS 30.0%
!! TTCAAGTTCAGAACTCATTT+TGG + Chr1:78974081-78974100 MsG0180004509.01.T01:intron 30.0%
!!! ACTTTTCTGAAATTTGCCAA+GGG + Chr1:78974992-78975011 MsG0180004509.01.T01:intron 30.0%
!!! GGTATTTTTTATAGTAGACC+TGG - Chr1:78972527-78972546 None:intergenic 30.0%
!!! GTTTTTTTTGTTTTTTGGGC+TGG + Chr1:78972982-78973001 MsG0180004509.01.T01:intron 30.0%
!!! TAAATGGTAAACTGGTTTTC+TGG + Chr1:78972960-78972979 MsG0180004509.01.T01:intron 30.0%
!!! TTTTATTGTGTTTGGTGTGA+AGG + Chr1:78973997-78974016 MsG0180004509.01.T01:intron 30.0%
AAAACTCACAAATTGCTTCC+TGG - Chr1:78972315-78972334 None:intergenic 35.0%
AAAATTGATCTGGTCTGGTT+TGG - Chr1:78972443-78972462 None:intergenic 35.0%
AAAGTCAAGGAAGCAAATGA+AGG + Chr1:78975147-78975166 MsG0180004509.01.T01:CDS 35.0%
AAATGTGTCCAAGGTATGTA+TGG + Chr1:78973433-78973452 MsG0180004509.01.T01:intron 35.0%
ACCATAAAATTGATCTGGTC+TGG - Chr1:78972448-78972467 None:intergenic 35.0%
ACCGAACCATAAAATTGATC+TGG - Chr1:78972453-78972472 None:intergenic 35.0%
ACCTTCATTGTAAAATCTGC+TGG + Chr1:78972662-78972681 MsG0180004509.01.T01:intron 35.0%
AGTGTGATTCAGATACATAG+TGG + Chr1:78973275-78973294 MsG0180004509.01.T01:intron 35.0%
AGTTATTTGTATTGCCTGCT+GGG + Chr1:78974950-78974969 MsG0180004509.01.T01:intron 35.0%
ATAGATCAAACCAAAACCAG+TGG - Chr1:78974118-78974137 MsG0180004508.01.T01:intron 35.0%
ATAGGAAACTATCTGCTTGA+TGG - Chr1:78973718-78973737 MsG0180004508.01.T01:intron 35.0%
ATCTTAGCTCGTTTCATAAC+TGG - Chr1:78972730-78972749 MsG0180004508.01.T01:intron 35.0%
CAAATCCATAGCCAAAAAGA+TGG - Chr1:78973901-78973920 MsG0180004508.01.T01:intron 35.0%
CAACTACATTAACAGGCAAA+AGG - Chr1:78975020-78975039 MsG0180004508.01.T01:intron 35.0%
CTGAACTTGAATACAAACAG+TGG - Chr1:78974072-78974091 MsG0180004508.01.T01:intron 35.0%
CTTGAATACAAACAGTGGTT+TGG - Chr1:78974067-78974086 MsG0180004508.01.T01:intron 35.0%
TAGTTATTTGTATTGCCTGC+TGG + Chr1:78974949-78974968 MsG0180004509.01.T01:intron 35.0%
TCATTGATGTTCTTCATCCA+GGG + Chr1:78973405-78973424 MsG0180004509.01.T01:CDS 35.0%
TTCAACTCCATTGTGATTAG+GGG + Chr1:78972400-78972419 MsG0180004509.01.T01:intron 35.0%
TTTCTCTTGGATAATTGGAC+TGG + Chr1:78974204-78974223 MsG0180004509.01.T01:intron 35.0%
! AAATTGATCTGGTCTGGTTT+GGG - Chr1:78972442-78972461 None:intergenic 35.0%
! AAGTTCAGAACTCATTTTGG+AGG + Chr1:78974084-78974103 MsG0180004509.01.T01:intron 35.0%
! ACCAGACCAGATCAATTTTA+TGG + Chr1:78972444-78972463 MsG0180004509.01.T01:intron 35.0%
! ACCAGCAGATTTTACAATGA+AGG - Chr1:78972666-78972685 MsG0180004508.01.T01:CDS 35.0%
! AGATGCTATTGAAACTTGCT+TGG + Chr1:78973506-78973525 MsG0180004509.01.T01:intron 35.0%
! CAACAATTTTTCTGTGTTGC+AGG + Chr1:78973382-78973401 MsG0180004509.01.T01:intron 35.0%
! CGTGTTTGTTAACAAGTGAA+GGG + Chr1:78974684-78974703 MsG0180004509.01.T01:intron 35.0%
! CTAGATCCCAAATCTGAAAT+CGG - Chr1:78972797-78972816 MsG0180004508.01.T01:intron 35.0%
! GAGTTTCTCATTCGTCTTTT+TGG + Chr1:78973809-78973828 MsG0180004509.01.T01:intron 35.0%
! GATTCCTGAGTTGAATAATC+CGG + Chr1:78972920-78972939 MsG0180004509.01.T01:intron 35.0%
! GTAGAATGGACTTGATACTA+AGG + Chr1:78975120-78975139 MsG0180004509.01.T01:intron 35.0%
! GTGAAACCGATTTCAGATTT+GGG + Chr1:78972788-78972807 MsG0180004509.01.T01:intron 35.0%
! TCACCCTAACATCTGTATTT+TGG - Chr1:78974171-78974190 MsG0180004508.01.T01:intron 35.0%
!! ACATCAGTGTTTTTGCCAAA+TGG + Chr1:78974354-78974373 MsG0180004509.01.T01:intron 35.0%
!! AGCAACGTTGATTTGAGATT+TGG + Chr1:78972756-78972775 MsG0180004509.01.T01:intron 35.0%
!! AGTTATTTCTAGTGCACAAC+TGG - Chr1:78973642-78973661 MsG0180004508.01.T01:intron 35.0%
!! CATTGTATTTTTGCAGACCA+AGG + Chr1:78975288-78975307 MsG0180004509.01.T01:intron 35.0%
!! GCAACGTTGATTTGAGATTT+GGG + Chr1:78972757-78972776 MsG0180004509.01.T01:intron 35.0%
!! TAGGTTTTTCAAATATGGGC+AGG + Chr1:78973028-78973047 MsG0180004509.01.T01:intron 35.0%
!! TCTCAAATCAACGTTGCTTT+TGG - Chr1:78972754-78972773 MsG0180004508.01.T01:intron 35.0%
!! TGATTTAGTTTGCTATTCCC+TGG + Chr1:78974307-78974326 MsG0180004509.01.T01:intron 35.0%
!! TTGCTGTTGGTAGTTTCTTA+AGG + Chr1:78975379-78975398 MsG0180004509.01.T01:CDS 35.0%
!!! CACTTTTCTGAAATTTGCCA+AGG + Chr1:78974991-78975010 MsG0180004509.01.T01:intron 35.0%
!!! CTCAAATCAACGTTGCTTTT+GGG - Chr1:78972753-78972772 MsG0180004508.01.T01:intron 35.0%
!!! TGCACTTCCTTTTGATTTGA+CGG + Chr1:78974610-78974629 MsG0180004509.01.T01:intron 35.0%
!!! TTTTGTTTTTTGGGCTGGTT+TGG + Chr1:78972987-78973006 MsG0180004509.01.T01:intron 35.0%
ACAAATTCAAACGTGAGCAC+TGG - Chr1:78974856-78974875 MsG0180004508.01.T01:intron 40.0%
ACATCAAGTGCAGAAGATTG+AGG + Chr1:78972689-78972708 MsG0180004509.01.T01:intron 40.0%
AGAACCGGATTATTCAACTC+AGG - Chr1:78972927-78972946 MsG0180004508.01.T01:intron 40.0%
ATGAACACCCCTAATCACAA+TGG - Chr1:78972410-78972429 None:intergenic 40.0%
CATCAACGACCGAAAATACA+CGG - Chr1:78972831-78972850 MsG0180004508.01.T01:intron 40.0%
CCAGGAAATTCATGACAAAC+AGG + Chr1:78972282-78972301 MsG0180004509.01.T01:CDS 40.0%
CCTGTTTGTCATGAATTTCC+TGG - Chr1:78972285-78972304 None:intergenic 40.0%
GCTCAATAGAACCGTTTACA+TGG + Chr1:78975626-78975645 MsG0180004509.01.T01:three_prime_UTR 40.0%
GCTTTACCTTCTTAACTCCA+CGG - Chr1:78975198-78975217 MsG0180004508.01.T01:intron 40.0%
GGCTAGGATTTATGATGTGA+AGG + Chr1:78974039-78974058 MsG0180004509.01.T01:intron 40.0%
GTCATTGATGTTCTTCATCC+AGG + Chr1:78973404-78973423 MsG0180004509.01.T01:CDS 40.0%
GTTATTGGTGTGACTGAGAA+CGG - Chr1:78972644-78972663 MsG0180004508.01.T01:CDS 40.0%
TGGCAAAAACACTGATGTTG+AGG - Chr1:78974352-78974371 MsG0180004508.01.T01:intron 40.0%
TGTGGTTGTTGATCTGGTTA+TGG + Chr1:78973051-78973070 MsG0180004509.01.T01:intron 40.0%
TTCTCAAAATTGGTCACTGC+TGG - Chr1:78975505-78975524 MsG0180004508.01.T01:intron 40.0%
! ATTTTCGGTCGTTGATGTCA+TGG + Chr1:78972834-78972853 MsG0180004509.01.T01:intron 40.0%
! CTAGGGGTGTGCAAAAAATT+TGG - Chr1:78973081-78973100 MsG0180004508.01.T01:intron 40.0%
! GCGTGTTTGTTAACAAGTGA+AGG + Chr1:78974683-78974702 MsG0180004509.01.T01:intron 40.0%
! GGAAGTGCAAAGTCAAACAT+CGG - Chr1:78974599-78974618 MsG0180004508.01.T01:intron 40.0%
! GGTGAAACCGATTTCAGATT+TGG + Chr1:78972787-78972806 MsG0180004509.01.T01:intron 40.0%
! TTTTCAAATATGGGCAGGTG+TGG + Chr1:78973033-78973052 MsG0180004509.01.T01:intron 40.0%
! TTTTTGCCGCCGTGTATTTT+CGG + Chr1:78972819-78972838 MsG0180004509.01.T01:intron 40.0%
!! TTCAGAACTCATTTTGGAGG+TGG + Chr1:78974087-78974106 MsG0180004509.01.T01:intron 40.0%
!!! CTTGTCCATCTTTTTGGCTA+TGG + Chr1:78973893-78973912 MsG0180004509.01.T01:intron 40.0%
!!! GCACTTCCTTTTGATTTGAC+GGG + Chr1:78974611-78974630 MsG0180004509.01.T01:intron 40.0%
ACTGACAGAACTGACACTAC+TGG - Chr1:78974879-78974898 MsG0180004508.01.T01:intron 45.0%
AGCTCGTTTCATAACTGGAC+AGG - Chr1:78972725-78972744 MsG0180004508.01.T01:intron 45.0%
CATAAACACAACGACGGTGA+TGG - Chr1:78972863-78972882 MsG0180004508.01.T01:intron 45.0%
CTCGTTTCATAACTGGACAG+GGG - Chr1:78972723-78972742 MsG0180004508.01.T01:intron 45.0%
GAAGATCCGTGGAGTTAAGA+AGG + Chr1:78975189-78975208 MsG0180004509.01.T01:CDS 45.0%
GCTCGTTTCATAACTGGACA+GGG - Chr1:78972724-78972743 MsG0180004508.01.T01:intron 45.0%
TACGCTCCCGTCAAATCAAA+AGG - Chr1:78974620-78974639 MsG0180004508.01.T01:intron 45.0%
TGATGTTCTTCATCCAGGGA+GGG + Chr1:78973409-78973428 MsG0180004509.01.T01:CDS 45.0%
TTGATGTTCTTCATCCAGGG+AGG + Chr1:78973408-78973427 MsG0180004509.01.T01:CDS 45.0%
! ACTTTTCTTCTTGCCAGCCT+TGG - Chr1:78975326-78975345 MsG0180004508.01.T01:intron 45.0%
! TGATTTGACGGGAGCGTATT+TGG + Chr1:78974622-78974641 MsG0180004509.01.T01:intron 45.0%
!! GTATTTTTGCAGACCAAGGC+TGG + Chr1:78975292-78975311 MsG0180004509.01.T01:intron 45.0%
AACAGGGCAAAGAAGATCCG+TGG + Chr1:78975178-78975197 MsG0180004509.01.T01:CDS 50.0%
AAGTAGAACATGTGCCCAGC+AGG - Chr1:78974967-78974986 MsG0180004508.01.T01:intron 50.0%
AGCTAAAGGAGAAGCTGGCT+AGG + Chr1:78974023-78974042 MsG0180004509.01.T01:intron 50.0%
AGGCAGTGACAATCAGAACC+AGG + Chr1:78972264-78972283 MsG0180004509.01.T01:CDS 50.0%
ATTGGTGTGACTGAGAACGG+CGG - Chr1:78972641-78972660 MsG0180004508.01.T01:CDS 50.0%
CAACGACCGAAAATACACGG+CGG - Chr1:78972828-78972847 MsG0180004508.01.T01:intron 50.0%
TAACAGGCAAAAGGAGCCCT+TGG - Chr1:78975011-78975030 MsG0180004508.01.T01:intron 50.0%
TGACAAACAGGCTTCTCTCC+AGG + Chr1:78972294-78972313 MsG0180004509.01.T01:CDS 50.0%
TGGTGTGAAGGCTGAGCTAA+AGG + Chr1:78974009-78974028 MsG0180004509.01.T01:intron 50.0%
AGGGAGGGCAAATGTGTCCA+AGG + Chr1:78973424-78973443 MsG0180004509.01.T01:CDS 55.0%
GGCAGGTGTGGTTGTTGATC+TGG + Chr1:78973045-78973064 MsG0180004509.01.T01:intron 55.0%
GGCTGAGCTAAAGGAGAAGC+TGG + Chr1:78974018-78974037 MsG0180004509.01.T01:intron 55.0%
TTGGACACATTTGCCCTCCC+TGG - Chr1:78973425-78973444 MsG0180004508.01.T01:intron 55.0%
TTTGGAGGTGGCAAGTCCAC+TGG + Chr1:78974099-78974118 MsG0180004509.01.T01:intron 55.0%
!!! GGTGGCAAGTCCACTGGTTT+TGG + Chr1:78974105-78974124 MsG0180004509.01.T01:intron 55.0%
CTTGGCAGCATCACCAGCCT+TGG - Chr1:78975308-78975327 MsG0180004508.01.T01:intron 60.0%
! CAAGGCTGGTGATGCTGCCA+AGG + Chr1:78975306-78975325 MsG0180004509.01.T01:CDS 60.0%
! GCTGGTGATGCTGCCAAGGC+TGG + Chr1:78975310-78975329 MsG0180004509.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 78972254 78975660 78972254 ID=MsG0180004509.01;Name=MsG0180004509.01
Chr1 mRNA 78972254 78975660 78972254 ID=MsG0180004509.01.T01;Parent=MsG0180004509.01;Name=MsG0180004509.01.T01;_AED=0.47;_eAED=0.48;_QI=0|0.33|0.75|1|0|0|4|261|104
Chr1 exon 78972254 78972343 78972254 ID=MsG0180004509.01.T01:exon:15262;Parent=MsG0180004509.01.T01
Chr1 exon 78973404 78973445 78973404 ID=MsG0180004509.01.T01:exon:15263;Parent=MsG0180004509.01.T01
Chr1 exon 78975124 78975210 78975124 ID=MsG0180004509.01.T01:exon:15264;Parent=MsG0180004509.01.T01
Chr1 exon 78975304 78975660 78975304 ID=MsG0180004509.01.T01:exon:15265;Parent=MsG0180004509.01.T01
Chr1 CDS 78972254 78972343 78972254 ID=MsG0180004509.01.T01:cds;Parent=MsG0180004509.01.T01
Chr1 CDS 78973404 78973445 78973404 ID=MsG0180004509.01.T01:cds;Parent=MsG0180004509.01.T01
Chr1 CDS 78975124 78975210 78975124 ID=MsG0180004509.01.T01:cds;Parent=MsG0180004509.01.T01
Chr1 CDS 78975304 78975399 78975304 ID=MsG0180004509.01.T01:cds;Parent=MsG0180004509.01.T01
Chr1 three_prime_UTR 78975400 78975660 78975400 ID=MsG0180004509.01.T01:three_prime_utr;Parent=MsG0180004509.01.T01
Gene Sequence

>MsG0180004509.01.T01

ATGGCGGACAAGGCAGTGACAATCAGAACCAGGAAATTCATGACAAACAGGCTTCTCTCCAGGAAGCAATTTGTGAGTTTTCGTTTCCTTGTCATTGATGTTCTTCATCCAGGGAGGGCAAATGTGTCCAAGAATGGACTTGATACTAAGGTTGAAAAGTCAAGGAAGCAAATGAAGGAAAGAAAGAACAGGGCAAAGAAGATCCGTGGAGTTAAGAAGACCAAGGCTGGTGATGCTGCCAAGGCTGGCAAGAAGAAAAGTTTTCTGTCATTTTGTTATGATATCAAGGTTATTTTGCTGTTGGTAGTTTCTTAA

Protein sequence

>MsG0180004509.01.T01

MADKAVTIRTRKFMTNRLLSRKQFVSFRFLVIDVLHPGRANVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKAGDAAKAGKKKSFLSFCYDIKVILLLVVS*