AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034497.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034497.01.T01 MTR_6g013420 73.469 196 31 3 1 192 1 179 3.37e-96 277
MsG0680034497.01.T01 MTR_6g013200 67.961 103 26 1 70 165 54 156 2.32e-45 148
MsG0680034497.01.T01 MTR_3g117110 43.636 110 57 3 78 185 58 164 1.44e-20 84.3
MsG0680034497.01.T01 MTR_5g088170 50.000 86 42 1 80 164 46 131 1.50e-20 84.0
MsG0680034497.01.T01 MTR_5g088180 50.000 86 42 1 80 164 59 144 1.75e-20 84.0
MsG0680034497.01.T01 MTR_5g088000 50.000 86 42 1 78 162 48 133 1.99e-19 80.5
MsG0680034497.01.T01 MTR_6g013170 41.228 114 63 2 78 191 58 167 8.71e-19 79.7
MsG0680034497.01.T01 MTR_4g007250 36.190 105 58 2 78 175 56 158 4.10e-14 67.4
MsG0680034497.01.T01 MTR_5g087970 40.000 85 50 1 84 167 67 151 3.19e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034497.01.T01 AT5G15350 54.762 126 53 3 70 192 48 172 1.15e-44 146
MsG0680034497.01.T01 AT4G12880 54.430 79 36 0 70 148 48 126 2.06e-24 93.6
MsG0680034497.01.T01 AT4G12880 59.420 69 28 0 80 148 20 88 8.58e-24 90.9
MsG0680034497.01.T01 AT3G01070 61.111 108 37 4 78 180 54 161 3.97e-23 90.9
MsG0680034497.01.T01 AT2G27035 45.977 87 44 2 78 164 56 139 4.73e-18 77.8

Find 39 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTTAATGTTAGATCTTC+TGG 0.138974 6:+88557612 MsG0680034497.01.T01:CDS
ACACCATTTGGCATTGTTTA+AGG 0.143798 6:-88559886 None:intergenic
GGTTTCAGCTACAAGGTTTA+TGG 0.192835 6:+88557211 MsG0680034497.01.T01:CDS
GGGATTCATTCATTTATTTA+TGG 0.202648 6:+88559831 MsG0680034497.01.T01:CDS
CAAATTTCAACTACACTACT+TGG 0.343403 6:+88557258 MsG0680034497.01.T01:CDS
TCACTTCTAGCACATTCATT+TGG 0.386132 6:-88559538 None:intergenic
TGAACAAATGTAACACCATT+TGG 0.389046 6:-88559898 None:intergenic
CAGATCATCCACTTCACAAT+TGG 0.391448 6:+88559588 MsG0680034497.01.T01:CDS
ATAAGCAAAAGGGTTTGAAT+TGG 0.400004 6:+88557593 MsG0680034497.01.T01:intron
GTTTATGGTTGGTGGTAGAA+TGG 0.400420 6:+88557226 MsG0680034497.01.T01:CDS
TGGTTAATGTTAGATCTTCT+GGG 0.405447 6:+88557613 MsG0680034497.01.T01:CDS
ACAATGGTGTTTCTGTTACT+TGG 0.406835 6:+88557159 MsG0680034497.01.T01:CDS
GCAACATTCCTTTCTTCTAA+AGG 0.414486 6:+88559764 MsG0680034497.01.T01:CDS
AGCATTTCTACAATGGTGAT+TGG 0.420256 6:+88557291 MsG0680034497.01.T01:CDS
AGATTTGTCCTTTAGAAGAA+AGG 0.430408 6:-88559772 None:intergenic
TTGTGATGTAATAAGCAAAA+GGG 0.435347 6:+88557583 MsG0680034497.01.T01:intron
CCACTTCACAATTGGACAAC+CGG 0.443540 6:+88559596 MsG0680034497.01.T01:CDS
TGCCTATGGTTTCAGCTACA+AGG 0.448802 6:+88557204 MsG0680034497.01.T01:CDS
AGTAGTGTAGTTGAAATTTG+TGG 0.454150 6:-88557255 None:intergenic
TACTATTTCATCAGCGGCAA+AGG 0.470534 6:+88559659 MsG0680034497.01.T01:CDS
TAATGGCGAGTCACGTTCAA+TGG 0.474693 6:-88559638 None:intergenic
CACAATTGGACAACCGGAGC+TGG 0.479780 6:+88559602 MsG0680034497.01.T01:CDS
TTTATGGTTGGTGGTAGAAT+GGG 0.481424 6:+88557227 MsG0680034497.01.T01:CDS
CAACTACACTACTTGGGCTA+AGG 0.482312 6:+88557265 MsG0680034497.01.T01:CDS
AACGACATCTCTTCCAGCTC+CGG 0.493793 6:-88559615 None:intergenic
AGTAACAGAAACACCATTGT+TGG 0.496883 6:-88557156 None:intergenic
GCTACAAGGTTTATGGTTGG+TGG 0.509353 6:+88557218 MsG0680034497.01.T01:CDS
CATCCTTAAACAATGCCAAA+TGG 0.521606 6:+88559883 MsG0680034497.01.T01:three_prime_UTR
TGGTTGGTGGTAGAATGGGT+TGG 0.521638 6:+88557231 MsG0680034497.01.T01:CDS
TCAGCTACAAGGTTTATGGT+TGG 0.534033 6:+88557215 MsG0680034497.01.T01:CDS
TTCAACAATTTCACCAACAA+TGG 0.536080 6:+88557143 MsG0680034497.01.T01:CDS
AAATTTCAACTACACTACTT+GGG 0.538580 6:+88557259 MsG0680034497.01.T01:CDS
AACTACACTACTTGGGCTAA+GGG 0.546247 6:+88557266 MsG0680034497.01.T01:CDS
CGCCATTACTATTTCATCAG+CGG 0.567316 6:+88559653 MsG0680034497.01.T01:CDS
TGCCGCTGATGAAATAGTAA+TGG 0.603131 6:-88559655 None:intergenic
AAGGGCAAGCATTTCTACAA+TGG 0.634172 6:+88557284 MsG0680034497.01.T01:CDS
CCGGTTGTCCAATTGTGAAG+TGG 0.638421 6:-88559596 None:intergenic
AACCTTGTAGCTGAAACCAT+AGG 0.641103 6:-88557206 None:intergenic
AACATCATAGAACAAAACAA+AGG 0.663729 6:+88557025 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATATATCAAACAATA+TGG - Chr6:88559270-88559289 None:intergenic 10.0%
!!! ATACTTAATTTGATATTTAA+TGG + Chr6:88557681-88557700 MsG0680034497.01.T01:intron 10.0%
!!! TCATTTTCTTAAATTATTAA+TGG - Chr6:88558662-88558681 None:intergenic 10.0%
!! AAATAGAATGAAATAATCAT+TGG + Chr6:88558102-88558121 MsG0680034497.01.T01:intron 15.0%
!! ACAAATTAATTAACTAGTTA+TGG + Chr6:88558863-88558882 MsG0680034497.01.T01:intron 15.0%
!! AGAAAAAATTAAAGTTGTAT+TGG + Chr6:88558228-88558247 MsG0680034497.01.T01:intron 15.0%
!!! AATTAAACATTTTCTTCTTT+AGG + Chr6:88559074-88559093 MsG0680034497.01.T01:intron 15.0%
!!! ATACTTAATTTGCTATTTTA+TGG + Chr6:88557452-88557471 MsG0680034497.01.T01:intron 15.0%
!!! ATCATTAATTTGATGTTTTA+TGG + Chr6:88557804-88557823 MsG0680034497.01.T01:intron 15.0%
!!! ATTAAACATTTTCTTCTTTA+GGG + Chr6:88559075-88559094 MsG0680034497.01.T01:intron 15.0%
!!! ATTACCTTTTTTTAACAAAT+AGG - Chr6:88559101-88559120 None:intergenic 15.0%
!!! CATTTATAATTATTTTGCAT+TGG + Chr6:88559935-88559954 MsG0680034497.01.T01:three_prime_UTR 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + Chr6:88558268-88558287 MsG0680034497.01.T01:intron 15.0%
!!! TTAATTAATTTGTTGACATT+AGG - Chr6:88558856-88558875 None:intergenic 15.0%
!! AAAAACCAAAAAATTCAACA+AGG - Chr6:88558510-88558529 None:intergenic 20.0%
!! AAACTGAAAAAATGAAATCA+AGG - Chr6:88559502-88559521 None:intergenic 20.0%
!! CTAACAAAAATGATAGAAAA+AGG - Chr6:88558371-88558390 None:intergenic 20.0%
!! GTAGTAAATAAACAATCAAA+AGG - Chr6:88558031-88558050 None:intergenic 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - Chr6:88558150-88558169 None:intergenic 20.0%
!!! TGGATTATTTTACTTCATTT+TGG - Chr6:88558911-88558930 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - Chr6:88558151-88558170 None:intergenic 20.0%
! AAATTTCAACTACACTACTT+GGG + Chr6:88557259-88557278 MsG0680034497.01.T01:CDS 25.0%
! AAGTAATGAAAGTCAACATT+TGG - Chr6:88558982-88559001 None:intergenic 25.0%
! GGGATTCATTCATTTATTTA+TGG + Chr6:88559831-88559850 MsG0680034497.01.T01:CDS 25.0%
! GTGATTTATCATTACTCTTA+AGG + Chr6:88559010-88559029 MsG0680034497.01.T01:intron 25.0%
! TAGTGTTCTTCACTTTATTA+TGG + Chr6:88557953-88557972 MsG0680034497.01.T01:intron 25.0%
! TGAATCTTTGTAAGTTACTT+TGG + Chr6:88557349-88557368 MsG0680034497.01.T01:intron 25.0%
! TTGTGATGTAATAAGCAAAA+GGG + Chr6:88557583-88557602 MsG0680034497.01.T01:intron 25.0%
! TTTAAAAAGCCAAACATAGA+AGG - Chr6:88558770-88558789 None:intergenic 25.0%
! TTTGTGATGTAATAAGCAAA+AGG + Chr6:88557582-88557601 MsG0680034497.01.T01:intron 25.0%
!! TAGTTCATCTTAGATCTTTT+GGG + Chr6:88557498-88557517 MsG0680034497.01.T01:intron 25.0%
!! TTAGTTCATCTTAGATCTTT+TGG + Chr6:88557497-88557516 MsG0680034497.01.T01:intron 25.0%
!! TTATGGACTAATTAGCAAAA+TGG + Chr6:88557469-88557488 MsG0680034497.01.T01:intron 25.0%
!! TTTCAGTTTTTGTGTATGAT+AGG + Chr6:88559513-88559532 MsG0680034497.01.T01:intron 25.0%
!! TTTGTGTACTTTGTTTAGAT+TGG + Chr6:88557372-88557391 MsG0680034497.01.T01:intron 25.0%
!!! ACTTCATTTTGGTTGAAATA+TGG - Chr6:88558900-88558919 None:intergenic 25.0%
!!! ATTTTGAAGAGAAATCTCAA+TGG - Chr6:88558006-88558025 None:intergenic 25.0%
!!! ATTTTGGTTGAAATATGGAT+GGG - Chr6:88558895-88558914 None:intergenic 25.0%
!!! TAAGCAAGTTTAGCTATTTT+AGG + Chr6:88558795-88558814 MsG0680034497.01.T01:intron 25.0%
!!! TAATGGACTAACAGAAAAAA+GGG + Chr6:88557698-88557717 MsG0680034497.01.T01:intron 25.0%
!!! TTAATGGACTAACAGAAAAA+AGG + Chr6:88557697-88557716 MsG0680034497.01.T01:intron 25.0%
!!! TTGATGTTTTATGGACTAAT+AGG + Chr6:88557813-88557832 MsG0680034497.01.T01:intron 25.0%
!!! TTTCTCCTTGTTGAATTTTT+TGG + Chr6:88558502-88558521 MsG0680034497.01.T01:intron 25.0%
AAATTGTGTGAGAGAAAAGT+TGG + Chr6:88558189-88558208 MsG0680034497.01.T01:intron 30.0%
AGTAGTGTAGTTGAAATTTG+TGG - Chr6:88557258-88557277 None:intergenic 30.0%
ATAAGCAAAAGGGTTTGAAT+TGG + Chr6:88557593-88557612 MsG0680034497.01.T01:intron 30.0%
ATTCAACAAGGAGAAAAAAG+AGG - Chr6:88558498-88558517 None:intergenic 30.0%
CAAATTTCAACTACACTACT+TGG + Chr6:88557258-88557277 MsG0680034497.01.T01:CDS 30.0%
TGAACAAATGTAACACCATT+TGG - Chr6:88559901-88559920 None:intergenic 30.0%
TGGTTAATGTTAGATCTTCT+GGG + Chr6:88557613-88557632 MsG0680034497.01.T01:CDS 30.0%
TTACGACTATGACCAAAATT+AGG - Chr6:88559037-88559056 None:intergenic 30.0%
TTCAACAAGGAGAAAAAAGA+GGG - Chr6:88558497-88558516 None:intergenic 30.0%
TTCAACAATTTCACCAACAA+TGG + Chr6:88557143-88557162 MsG0680034497.01.T01:CDS 30.0%
TTCATTTGCAAATTAACCCA+TGG - Chr6:88558949-88558968 None:intergenic 30.0%
TTGGTTAATGTTAGATCTTC+TGG + Chr6:88557612-88557631 MsG0680034497.01.T01:CDS 30.0%
TTTACTTGTCCTTCTATGTT+TGG + Chr6:88558758-88558777 MsG0680034497.01.T01:intron 30.0%
! AGATTTGTCCTTTAGAAGAA+AGG - Chr6:88559775-88559794 None:intergenic 30.0%
! AGCTTTTTGTGTCAATTTCA+TGG + Chr6:88557887-88557906 MsG0680034497.01.T01:intron 30.0%
! AGGGCCTATTTGTTAAAAAA+AGG + Chr6:88559094-88559113 MsG0680034497.01.T01:intron 30.0%
! GCAATTTTCAGAAACAACAA+TGG + Chr6:88557095-88557114 MsG0680034497.01.T01:exon 30.0%
! GTAGTTTTTGTCCAATTTGA+GGG + Chr6:88557975-88557994 MsG0680034497.01.T01:intron 30.0%
! TACTCTTAAGGTCCTAATTT+TGG + Chr6:88559022-88559041 MsG0680034497.01.T01:intron 30.0%
! TGGTTTATCTGAAACAAGAA+AGG - Chr6:88558470-88558489 None:intergenic 30.0%
! TTATTGTCATGTTTTGCCTA+TGG + Chr6:88557190-88557209 MsG0680034497.01.T01:CDS 30.0%
! TTTTCAGAAACAACAATGGA+AGG + Chr6:88557099-88557118 MsG0680034497.01.T01:exon 30.0%
!!! ATGCCTATTGTTTTTGCTAT+TGG + Chr6:88559800-88559819 MsG0680034497.01.T01:CDS 30.0%
!!! CATTTTGGTTGAAATATGGA+TGG - Chr6:88558896-88558915 None:intergenic 30.0%
!!! TTCACTGTTTTTGTAAACTC+TGG - Chr6:88557066-88557085 None:intergenic 30.0%
ACACCATTTGGCATTGTTTA+AGG - Chr6:88559889-88559908 None:intergenic 35.0%
ACTCACAAGAGAATGTACTT+AGG - Chr6:88559351-88559370 None:intergenic 35.0%
AGCATTTCTACAATGGTGAT+TGG + Chr6:88557291-88557310 MsG0680034497.01.T01:CDS 35.0%
AGTAACAGAAACACCATTGT+TGG - Chr6:88557159-88557178 None:intergenic 35.0%
ATTCTCAGATCCACAATTCT+TGG + Chr6:88558401-88558420 MsG0680034497.01.T01:intron 35.0%
CATCCTTAAACAATGCCAAA+TGG + Chr6:88559883-88559902 MsG0680034497.01.T01:three_prime_UTR 35.0%
GCAACATTCCTTTCTTCTAA+AGG + Chr6:88559764-88559783 MsG0680034497.01.T01:CDS 35.0%
GCACCAATAGCAAAAACAAT+AGG - Chr6:88559806-88559825 None:intergenic 35.0%
TAATCTTCCAAGCACTTTCA+TGG - Chr6:88559402-88559421 None:intergenic 35.0%
TCAAAAGAAGCCAAGAATTG+TGG - Chr6:88558414-88558433 None:intergenic 35.0%
TCACTTCTAGCACATTCATT+TGG - Chr6:88559541-88559560 None:intergenic 35.0%
! ACAATGGTGTTTCTGTTACT+TGG + Chr6:88557159-88557178 MsG0680034497.01.T01:CDS 35.0%
! AGGAGAAAAAAGAGGGATTT+TGG - Chr6:88558490-88558509 None:intergenic 35.0%
! GGTAGTTTTTGTCCAATTTG+AGG + Chr6:88557974-88557993 MsG0680034497.01.T01:intron 35.0%
! TTATGGACTAATAGGCAGAT+GGG + Chr6:88557821-88557840 MsG0680034497.01.T01:intron 35.0%
! TTTATGGACTAATAGGCAGA+TGG + Chr6:88557820-88557839 MsG0680034497.01.T01:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + Chr6:88558258-88558277 MsG0680034497.01.T01:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - Chr6:88558277-88558258 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG + Chr6:88558060-88558079 MsG0680034497.01.T01:intron 35.0%
!! TTTATGGTTGGTGGTAGAAT+GGG + Chr6:88557227-88557246 MsG0680034497.01.T01:CDS 35.0%
!!! AATGTTGCACTAGCTTTTTC+AGG - Chr6:88559752-88559771 None:intergenic 35.0%
!!! GGGAGTATTTTGTTTCAAGA+TGG + Chr6:88558318-88558337 MsG0680034497.01.T01:intron 35.0%
AACCTTGTAGCTGAAACCAT+AGG - Chr6:88557209-88557228 None:intergenic 40.0%
AACTACACTACTTGGGCTAA+GGG + Chr6:88557266-88557285 MsG0680034497.01.T01:CDS 40.0%
AAGGGCAAGCATTTCTACAA+TGG + Chr6:88557284-88557303 MsG0680034497.01.T01:CDS 40.0%
AATTTCCCTCCTCAATCCAT+GGG + Chr6:88558930-88558949 MsG0680034497.01.T01:intron 40.0%
ATGTAGCGATCTTACTCAGT+GGG - Chr6:88559235-88559254 None:intergenic 40.0%
CAGATCATCCACTTCACAAT+TGG + Chr6:88559588-88559607 MsG0680034497.01.T01:CDS 40.0%
CGCCATTACTATTTCATCAG+CGG + Chr6:88559653-88559672 MsG0680034497.01.T01:CDS 40.0%
GGTTTCAGCTACAAGGTTTA+TGG + Chr6:88557211-88557230 MsG0680034497.01.T01:CDS 40.0%
TACTATTTCATCAGCGGCAA+AGG + Chr6:88559659-88559678 MsG0680034497.01.T01:CDS 40.0%
TCAGCTACAAGGTTTATGGT+TGG + Chr6:88557215-88557234 MsG0680034497.01.T01:CDS 40.0%
TGCCGCTGATGAAATAGTAA+TGG - Chr6:88559658-88559677 None:intergenic 40.0%
TGTCAATGTCGTGATTGTGT+CGG - Chr6:88558605-88558624 None:intergenic 40.0%
TGTGAGAGAAAAGTTGGAGA+GGG + Chr6:88558195-88558214 MsG0680034497.01.T01:intron 40.0%
TTCCAAGCACTTTCATGGAT+TGG - Chr6:88559397-88559416 None:intergenic 40.0%
! AATTAACCCATGGATTGAGG+AGG - Chr6:88558939-88558958 None:intergenic 40.0%
! ATAGGCAGATGGGTTTGAAT+TGG + Chr6:88557831-88557850 MsG0680034497.01.T01:intron 40.0%
! ATTAACCCATGGATTGAGGA+GGG - Chr6:88558938-88558957 None:intergenic 40.0%
! GCAAATTAACCCATGGATTG+AGG - Chr6:88558942-88558961 None:intergenic 40.0%
! GTGGTGGTAGATTTTCAACA+CGG - Chr6:88559715-88559734 None:intergenic 40.0%
! TGGTAGATTTTCAACACGGA+CGG - Chr6:88559711-88559730 None:intergenic 40.0%
!! AGCACTTTCATGGATTGGAT+TGG - Chr6:88559392-88559411 None:intergenic 40.0%
!! ATCCAATCCATGAAAGTGCT+TGG + Chr6:88559392-88559411 MsG0680034497.01.T01:intron 40.0%
!! GTTTATGGTTGGTGGTAGAA+TGG + Chr6:88557226-88557245 MsG0680034497.01.T01:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr6:88558298-88558317 MsG0680034497.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+TGG - Chr6:88558317-88558298 None:intergenic 40.0%
!!! TAGCTATTTTAGGACCACAC+TGG + Chr6:88558805-88558824 MsG0680034497.01.T01:intron 40.0%
!!! TTTTGCTATTGGTGCAGCAT+GGG + Chr6:88559811-88559830 MsG0680034497.01.T01:CDS 40.0%
!!! TTTTTGCTATTGGTGCAGCA+TGG + Chr6:88559810-88559829 MsG0680034497.01.T01:CDS 40.0%
AAAGTTGGAGAGGGTAGAGT+TGG + Chr6:88558204-88558223 MsG0680034497.01.T01:intron 45.0%
CAACTACACTACTTGGGCTA+AGG + Chr6:88557265-88557284 MsG0680034497.01.T01:CDS 45.0%
CAATGGCATTGCCCTCAAAT+TGG - Chr6:88557989-88558008 None:intergenic 45.0%
CAATTTCCCTCCTCAATCCA+TGG + Chr6:88558929-88558948 MsG0680034497.01.T01:intron 45.0%
CACTGAGTAAGATCGCTACA+TGG + Chr6:88559234-88559253 MsG0680034497.01.T01:intron 45.0%
CATGTAGCGATCTTACTCAG+TGG - Chr6:88559236-88559255 None:intergenic 45.0%
CCACTTCACAATTGGACAAC+CGG + Chr6:88559596-88559615 MsG0680034497.01.T01:CDS 45.0%
CGATCTTACTCAGTGGGATA+AGG - Chr6:88559229-88559248 None:intergenic 45.0%
GCTACAAGGTTTATGGTTGG+TGG + Chr6:88557218-88557237 MsG0680034497.01.T01:CDS 45.0%
GTGTGAGAGAAAAGTTGGAG+AGG + Chr6:88558194-88558213 MsG0680034497.01.T01:intron 45.0%
GTTCGTAAATAGTGCCAGTG+TGG - Chr6:88558822-88558841 None:intergenic 45.0%
TAATGGCGAGTCACGTTCAA+TGG - Chr6:88559641-88559660 None:intergenic 45.0%
TGCCTATGGTTTCAGCTACA+AGG + Chr6:88557204-88557223 MsG0680034497.01.T01:CDS 45.0%
TTACTCAGTGGGATAAGGCT+TGG - Chr6:88559224-88559243 None:intergenic 45.0%
! AGCGGCAAAGGATTTTGCTT+TGG + Chr6:88559671-88559690 MsG0680034497.01.T01:CDS 45.0%
! CATGGATTGAGGAGGGAAAT+TGG - Chr6:88558931-88558950 None:intergenic 45.0%
! GGCAAAGGATTTTGCTTTGG+TGG + Chr6:88559674-88559693 MsG0680034497.01.T01:CDS 45.0%
!! ATGAGTGTCGCTTTAGGCTT+TGG + Chr6:88558066-88558085 MsG0680034497.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr6:88558297-88558316 MsG0680034497.01.T01:intron 45.0%
!!! GCTTTTTCAGGTGCAGCTTT+TGG - Chr6:88559740-88559759 None:intergenic 45.0%
!!! TTTTCAGGTGCAGCTTTTGG+TGG - Chr6:88559737-88559756 None:intergenic 45.0%
!! TGTAAATTTAAAAATAAATT+TGG + Chr6:88558343-88558362 MsG0680034497.01.T01:intron 5.0%
AACGACATCTCTTCCAGCTC+CGG - Chr6:88559618-88559637 None:intergenic 50.0%
ACGACATTGACACTGACACG+TGG + Chr6:88558613-88558632 MsG0680034497.01.T01:intron 50.0%
CCGGTTGTCCAATTGTGAAG+TGG - Chr6:88559599-88559618 None:intergenic 50.0%
TGGACATTGACACTGACACG+TGG + Chr6:88558633-88558652 MsG0680034497.01.T01:intron 50.0%
!! TGGTTGGTGGTAGAATGGGT+TGG + Chr6:88557231-88557250 MsG0680034497.01.T01:CDS 50.0%
CACAATTGGACAACCGGAGC+TGG + Chr6:88559602-88559621 MsG0680034497.01.T01:CDS 55.0%
! TCAGGTGCAGCTTTTGGTGG+TGG - Chr6:88559734-88559753 None:intergenic 55.0%
!!! GGTGCAGCTTTTGGTGGTGG+TGG - Chr6:88559731-88559750 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 88557031 88559958 88557031 ID=MsG0680034497.01;Name=MsG0680034497.01
Chr6 mRNA 88557031 88559958 88557031 ID=MsG0680034497.01.T01;Parent=MsG0680034497.01;Name=MsG0680034497.01.T01;_AED=0.49;_eAED=0.52;_QI=83|0|0.66|1|0|0.66|3|102|192
Chr6 exon 88559519 88559958 88559519 ID=MsG0680034497.01.T01:exon:4251;Parent=MsG0680034497.01.T01
Chr6 exon 88557598 88557634 88557598 ID=MsG0680034497.01.T01:exon:4250;Parent=MsG0680034497.01.T01
Chr6 exon 88557031 88557317 88557031 ID=MsG0680034497.01.T01:exon:4249;Parent=MsG0680034497.01.T01
Chr6 five_prime_UTR 88557031 88557113 88557031 ID=MsG0680034497.01.T01:five_prime_utr;Parent=MsG0680034497.01.T01
Chr6 CDS 88557114 88557317 88557114 ID=MsG0680034497.01.T01:cds;Parent=MsG0680034497.01.T01
Chr6 CDS 88557598 88557634 88557598 ID=MsG0680034497.01.T01:cds;Parent=MsG0680034497.01.T01
Chr6 CDS 88559519 88559856 88559519 ID=MsG0680034497.01.T01:cds;Parent=MsG0680034497.01.T01
Chr6 three_prime_UTR 88559857 88559958 88559857 ID=MsG0680034497.01.T01:three_prime_utr;Parent=MsG0680034497.01.T01
Gene Sequence

>MsG0680034497.01.T01

ATGGAAGGAACAAAGAAGAGAGTGTTTGCTTCAACAATTTCACCAACAATGGTGTTTCTGTTACTTGGTTTTGCTATTATTGTCATGTTTTGCCTATGGTTTCAGCTACAAGGTTTATGGTTGGTGGTAGAATGGGTTGGACCACAAATTTCAACTACACTACTTGGGCTAAGGGCAAGCATTTCTACAATGGTGATTGGCTTTCAAAAGGGTTTGAATTGGTTAATGTTAGATCTTCTGGTTTTTGTGTATGATAGGAACCAAATGAATGTGCTAGAAGTGAACAAAACAGATTATGAAACTTGCAACTCAGATCATCCACTTCACAATTGGACAACCGGAGCTGGAAGAGATGTCGTTCCATTGAACGTGACTCGCCATTACTATTTCATCAGCGGCAAAGGATTTTGCTTTGGTGGTATGAAGTTAGCCGTCCGTGTTGAAAATCTACCACCACCACCAAAAGCTGCACCTGAAAAAGCTAGTGCAACATTCCTTTCTTCTAAAGGACAAATCTTTCTCATGCCTATTGTTTTTGCTATTGGTGCAGCATGGGATTCATTCATTTATTTATGGTAA
Protein sequence

>MsG0680034497.01.T01

MEGTKKRVFASTISPTMVFLLLGFAIIVMFCLWFQLQGLWLVVEWVGPQISTTLLGLRASISTMVIGFQKGLNWLMLDLLVFVYDRNQMNVLEVNKTDYETCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCFGGMKLAVRVENLPPPPKAAPEKASATFLSSKGQIFLMPIVFAIGAAWDSFIYLW*