AlfalfaGEDB | MsG0780037523.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037523.01

KEGG: -
GO: GO:0005515
PFAM: PF08387 PF12937

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037523.01.T01	KEH22408.1	68.512	289	76	5	610	893	1	279	5.69E-114	360

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037523.01.T01	Q1PED9	30.043	233	124	8	10	219	11	227	2.75E-14	79.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037523.01.T01	A0A072TZX0	68.512	289	76	5	610	893	1	279	2.72e-114	360

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
MsG0080048156.01	MsG0780037523.01	PPI
MsG0080049065.01	MsG0780037523.01	PPI
MsG0180006146.01	MsG0780037523.01	PPI
MsG0280006326.01	MsG0780037523.01	PPI
MsG0280006373.01	MsG0780037523.01	PPI
MsG0280006373.01	MsG0780037523.01	PPI
MsG0280006398.01	MsG0780037523.01	PPI
MsG0280007849.01	MsG0780037523.01	PPI
MsG0280011351.01	MsG0780037523.01	PPI
MsG0280011360.01	MsG0780037523.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037523.01.T01	MTR_7g045307	68.512	289	76	5	610	893	1	279	6.89e-118	360
MsG0780037523.01.T01	MTR_4g012680	68.403	288	80	4	610	892	1	282	1.29e-112	346
MsG0780037523.01.T01	MTR_1g015673	67.820	289	70	5	610	893	1	271	2.71e-110	340
MsG0780037523.01.T01	MTR_5g464630	64.583	288	79	5	610	892	1	270	7.29e-102	318
MsG0780037523.01.T01	MTR_7g445650	63.235	204	63	1	690	893	1	192	1.68e-73	239
MsG0780037523.01.T01	MTR_7g034090	51.246	281	115	6	10	273	3	278	4.68e-69	236
MsG0780037523.01.T01	MTR_7g034090	42.662	293	115	8	324	609	61	307	6.41e-51	185
MsG0780037523.01.T01	MTR_4g045590	49.035	259	98	4	622	879	86	311	1.76e-68	231
MsG0780037523.01.T01	MTR_6g052950	51.867	241	85	3	610	820	26	265	3.48e-68	229
MsG0780037523.01.T01	MTR_0560s0010	63.131	198	66	2	698	892	61	254	6.09e-65	219

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037523.01.T01	AT3G59000	33.628	226	120	9	11	219	2	214	5.17e-18	87.0
MsG0780037523.01.T01	AT3G59190	30.043	233	124	8	10	219	11	227	2.80e-15	79.3
MsG0780037523.01.T01	AT3G59190	30.043	233	124	8	10	219	11	227	3.90e-15	79.7
MsG0780037523.01.T01	AT4G14096	33.333	222	111	11	10	225	7	197	4.75e-15	79.3
MsG0780037523.01.T01	AT4G14096	33.333	222	111	11	10	225	7	197	4.75e-15	79.3
MsG0780037523.01.T01	AT4G14103	40.000	130	69	4	5	131	2	125	1.44e-14	77.8
MsG0780037523.01.T01	AT4G14103	40.000	130	69	4	5	131	2	125	1.51e-14	77.0
MsG0780037523.01.T01	AT4G14103	40.000	130	69	4	5	131	2	125	1.51e-14	77.0
MsG0780037523.01.T01	AT3G58900	38.931	131	67	3	11	134	2	126	1.70e-14	75.9
MsG0780037523.01.T01	AT3G58900	38.931	131	67	3	11	134	2	126	2.64e-14	75.5

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Find 177 sgRNAs with CRISPR-Local

Find 585 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATCCTCATTTCCAA+GGG	0.549722	7:+27657877	MsG0780037523.01.T01:CDS
AAAATTTCATAAGCTTTACA+AGG	0.538242	7:-27659972	None:intergenic
AAACCCATAGTTTACCTGCT+CGG	0.590060	7:-27660042	None:intergenic
AAAGAACAACATGTGATTTG+GGG	0.625789	7:+27660705	MsG0780037523.01.T01:CDS
AAATGAAAAGTTTCGAGAGA+AGG	0.520475	7:-27657067	None:intergenic
AAATTTCTTCCATTCCACAG+AGG	0.731127	7:-27657209	None:intergenic
AACACCCCGCGGTACCACAA+AGG	0.669914	7:-27656925	None:intergenic
AACCAAGAAAATTGAGGTTG+AGG	0.520352	7:+27660457	MsG0780037523.01.T01:CDS
AACCCATAGTTTACCTGCTC+GGG	0.465691	7:-27660041	None:intergenic
AAGAAATTTGAGAAGAAACT+AGG	0.540630	7:-27656443	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGACGAGAAAAAAGAG+AGG	-	Chr7:27654790-27654809	None:intergenic	30.0%
AAAGAACAACATGTGATTTG+GGG	+	Chr7:27660705-27660724	MsG0780037523.01.T01:CDS	30.0%
AAATGAAAAGTTTCGAGAGA+AGG	-	Chr7:27657070-27657089	None:intergenic	30.0%
AATAAAAACCCTTGTCCATA+TGG	-	Chr7:27652277-27652296	None:intergenic	30.0%
AATCTCTTAGATCTGAAGAA+TGG	+	Chr7:27652433-27652452	MsG0780037523.01.T01:CDS	30.0%
ACTATCACATGAAAAGGATA+AGG	+	Chr7:27653651-27653670	MsG0780037523.01.T01:intron	30.0%
AGAAAGAACAACATGTGATT+TGG	+	Chr7:27660703-27660722	MsG0780037523.01.T01:CDS	30.0%
ATAAATTTCGTAGTCTCATC+CGG	+	Chr7:27652886-27652905	MsG0780037523.01.T01:intron	30.0%
ATAAGTCTAATGACGTAATC+CGG	+	Chr7:27659001-27659020	MsG0780037523.01.T01:intron	30.0%
ATACAACGTATAAAGTGCAA+GGG	-	Chr7:27654235-27654254	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	27651816	27660781	27651816	ID=MsG0780037523.01;Name=MsG0780037523.01
Chr7	mRNA	27651816	27660781	27651816	ID=MsG0780037523.01.T01;Parent=MsG0780037523.01;Name=MsG0780037523.01.T01;_AED=0.16;_eAED=0.16;_QI=0\|0\|0\|0.9\|1\|1\|10\|0\|893
Chr7	exon	27651816	27652202	27651816	ID=MsG0780037523.01.T01:exon:12778;Parent=MsG0780037523.01.T01
Chr7	exon	27652432	27652566	27652432	ID=MsG0780037523.01.T01:exon:12779;Parent=MsG0780037523.01.T01
Chr7	exon	27652655	27652792	27652655	ID=MsG0780037523.01.T01:exon:12780;Parent=MsG0780037523.01.T01
Chr7	exon	27652970	27653106	27652970	ID=MsG0780037523.01.T01:exon:12781;Parent=MsG0780037523.01.T01
Chr7	exon	27656413	27656544	27656413	ID=MsG0780037523.01.T01:exon:12782;Parent=MsG0780037523.01.T01
Chr7	exon	27656737	27656932	27656737	ID=MsG0780037523.01.T01:exon:12783;Parent=MsG0780037523.01.T01
Chr7	exon	27657016	27657333	27657016	ID=MsG0780037523.01.T01:exon:12784;Parent=MsG0780037523.01.T01
Chr7	exon	27657422	27657559	27657422	ID=MsG0780037523.01.T01:exon:12785;Parent=MsG0780037523.01.T01
Chr7	exon	27657668	27657911	27657668	ID=MsG0780037523.01.T01:exon:12786;Parent=MsG0780037523.01.T01
Chr7	exon	27659925	27660781	27659925	ID=MsG0780037523.01.T01:exon:12787;Parent=MsG0780037523.01.T01
Chr7	CDS	27651816	27652202	27651816	ID=MsG0780037523.01.T01:cds;Parent=MsG0780037523.01.T01
Chr7	CDS	27652432	27652566	27652432	ID=MsG0780037523.01.T01:cds;Parent=MsG0780037523.01.T01
Chr7	CDS	27652655	27652792	27652655	ID=MsG0780037523.01.T01:cds;Parent=MsG0780037523.01.T01
Chr7	CDS	27652970	27653106	27652970	ID=MsG0780037523.01.T01:cds;Parent=MsG0780037523.01.T01
Chr7	CDS	27656413	27656544	27656413	ID=MsG0780037523.01.T01:cds;Parent=MsG0780037523.01.T01
Chr7	CDS	27656737	27656932	27656737	ID=MsG0780037523.01.T01:cds;Parent=MsG0780037523.01.T01
Chr7	CDS	27657016	27657333	27657016	ID=MsG0780037523.01.T01:cds;Parent=MsG0780037523.01.T01
Chr7	CDS	27657422	27657559	27657422	ID=MsG0780037523.01.T01:cds;Parent=MsG0780037523.01.T01
Chr7	CDS	27657668	27657911	27657668	ID=MsG0780037523.01.T01:cds;Parent=MsG0780037523.01.T01
Chr7	CDS	27659925	27660781	27659925	ID=MsG0780037523.01.T01:cds;Parent=MsG0780037523.01.T01

Gene Sequence

>MsG0780037523.01.T01

ATGTCAATGGCGGATAAGGAGGAGGAGAAGGATATCATAAGCACTTTACCAGACGAGATTCTCTGTCATATTCTCTCTTTTCTCCAAACCAAACAAGCAAATGTCACAACCATTCTTTCCAAACGGTGGAAACATCTCTGGCTTTCAGTTCCCACTCTCTACTTCAATAACAGGCGGACAGGGACGGAGAAAAACATTGAATTTCGATTTAACGACTTTGTATACTCAGTTTTGCTGTCCCGAGATGCTGCACTTCCTATTAAAACTTTCCGTCTCAAAGCGCTATATGATTATCCTGAACATCACTGCCCCAGTAACAGTATCCCTATATGGCTCAACTTTGTGGTTCCACGGGGTGTTGAAAATCTTCATCTCTATGTGAACAGAGAATCTCTTAGATCTGAAGAATGGAAGAGCTTTTGCTTAAATAACTTGATCCAAGCGGATATTGATATCGTTGGTTGTTATTTTCCATTGAAAGCAGTTCGCAATGTACTCTCTCTGAGCTTTGAATTTGATCAGGATCCTTGCTGTGAAGATTTCCTTCCTACTTTTCATAATTTGACCAGGCTGGAGTTTACTTCTCGTAGATATAGTTTGAAATTCTTGATAGAAGTTCTCAACCACTGCCCTAAGCTTCAAAAGCTTGACATTGATCCGACTGACGTAGCATGGCCTAGAGATGACAGTGAAAAATGGGTAGAGCCAGATGTTGTTCCCCAATGCCTTTCATTACACCTTAAAACTTGCTATCTTTTCAACTTCTTAGGCTTACAATATGAGCTTATGGTGGCGAGGGTGTATGATAAAGAGTATCGAGAATCTGACCTAGTTTCTTCTCAAATTTCTTTGCTTCCGTCCCTCTCTGTGCATACACTTCGTCTAGCTAGTCGCTGCCACGTCTCTACGTCCTTCACTTCGTTTCAGCGTTCCCACTCTCTACTTCAAAAACACTACAGCGGTGGGCGAGAAAAACATGAGTTTCGATTTAACGACTTTGTATACTCAGTTTTGCTGTCCCGAGATACTGCACTTCCTATTAAGACTTTCTGTCTCAAGGCACTATATGATTCTCCTGAACATCACTGCCCCACTAACAGTATCCCCATATGGCTCACCTTTGTGGACGCTTTTTTTGGTTTCCGTATGGACAAGGGTTTTTCTTCGGTTCTACTTCCTTCTCTCGAAACTTTTCATTTGGAACGGATTCGGTTTTGGTTTCTTGAACTTCGAGATTTTATGTCATTTCTAAAGGGTTGGCCAATACTTGAGAATTTACTCACATATGATGTGCCCTTTAATCGTGAGGAATCTCTTACCTCTGTGGAATGGAAGAAATTTTGCTTAAATAACTTGATCCAAGCGGATATTGATTGTGTTGGTTCTTATTTTCCATTGAAAGCAGTTCGCAATGTACTGTCTCTGAGCTTTGAGTTTGATCAGGATCCTTGCTGTAAAGATTTCCTTCCTACTTTTCATAATTTGACCCGGCTGGAGTTTACTTCTCGTAATTTTAGTTTGAATTTCTTAATAGAAGTTCTCAACCACTGCCCTAAGCTTCAAAAGCTTGACATTGATCCGACGGACGTAGCATGGCCTAGAGATGACAATGAAAAATGGGTAGACCCAGATGTTGTTCCACAATGCCTTTCATTATACCTTAAAACTTGCAATCTTTTCAACTTCTTAGGCTTACAATATGAGCTTATGATAGCGAGGTATATTTTGAAGAATGCAATAGTATTACAAACCATGAAAATCTGGAATGGTGGACAACCTGAAATAGAAAGAAAATTATCCTCATTTCCAAGGGTTTCTTCAACATGCATGGCTCAAAACCTTTATCAATGGACCTTTTCTCCCCTTTCACCACCTTGTAAAGCTTATGAAATTTTTGGTCACACTGGTGTTGAATGTCAACTAGGTAGTGTTGTTAGAAGTCCCGAGCAGGTAAACTATGGGTTTAGGAATGATCAAATTTTTTCTCAAACCCCTCAAAATCTTTTTGGACAACAAATATCACCACCCGGTTTTGCAAACAACCAAAGAGTCTCTCAAAAATCCGACTTGGAACTTTTGATAGAAAATTTTGAATTAGATAACATTAGGCATAACCAAGAGTTTAAAGTCAAAGCTGGAATTTTGAATGACTCTCTCAATAGGCTTTCCGCAAATGTGGATTCTCTTTCTACTCACAACAAAATGCTTGAGACTCAAATCCCTCAAGTAACCCAACAAGTAACCTCTTACCCACAACCCTCCAGAGTCTTCCCAAGTCAAACTGAAACCAACCCCAAAAGCCCAATAAATGCTATTACACCTAGGGATGGTAAGCAATTAGAAGACCCCGTTGTGGAAACCAAGAAAATTGAGGTTGAGGTAGAGAGTGAAAAGCCACAAAGTGAGAAAGTTGTAGTAGAAAGTGGAAAGCCTCACATATCACCACCATATGAGCCAAAAATTCATTTCCCACAAGGGTTTGATGAGTCCAAGTTAGATGAGCAGTTTAGGAAATCTATTGCAATCATTCAAAGCAAACTGTCATCTAAACTTAAGGATCCCGGGAGTTTTTCCATACCATGTGACATAGGATCCAAGACTATAGAAAGAACAACATGTGATTTGGGGGAGAATATTAGTTTGATGCCATTGTCCCTTAGTGAGAGATTAGGTATCGGATAG

Protein sequence

>MsG0780037523.01.T01

MSMADKEEEKDIISTLPDEILCHILSFLQTKQANVTTILSKRWKHLWLSVPTLYFNNRRTGTEKNIEFRFNDFVYSVLLSRDAALPIKTFRLKALYDYPEHHCPSNSIPIWLNFVVPRGVENLHLYVNRESLRSEEWKSFCLNNLIQADIDIVGCYFPLKAVRNVLSLSFEFDQDPCCEDFLPTFHNLTRLEFTSRRYSLKFLIEVLNHCPKLQKLDIDPTDVAWPRDDSEKWVEPDVVPQCLSLHLKTCYLFNFLGLQYELMVARVYDKEYRESDLVSSQISLLPSLSVHTLRLASRCHVSTSFTSFQRSHSLLQKHYSGGREKHEFRFNDFVYSVLLSRDTALPIKTFCLKALYDSPEHHCPTNSIPIWLTFVDAFFGFRMDKGFSSVLLPSLETFHLERIRFWFLELRDFMSFLKGWPILENLLTYDVPFNREESLTSVEWKKFCLNNLIQADIDCVGSYFPLKAVRNVLSLSFEFDQDPCCKDFLPTFHNLTRLEFTSRNFSLNFLIEVLNHCPKLQKLDIDPTDVAWPRDDNEKWVDPDVVPQCLSLYLKTCNLFNFLGLQYELMIARYILKNAIVLQTMKIWNGGQPEIERKLSSFPRVSSTCMAQNLYQWTFSPLSPPCKAYEIFGHTGVECQLGSVVRSPEQVNYGFRNDQIFSQTPQNLFGQQISPPGFANNQRVSQKSDLELLIENFELDNIRHNQEFKVKAGILNDSLNRLSANVDSLSTHNKMLETQIPQVTQQVTSYPQPSRVFPSQTETNPKSPINAITPRDGKQLEDPVVETKKIEVEVESEKPQSEKVVVESGKPHISPPYEPKIHFPQGFDESKLDEQFRKSIAIIQSKLSSKLKDPGSFSIPCDIGSKTIERTTCDLGENISLMPLSLSERLGIG*