AlfalfaGEDB | MsG0780040053.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040053.01

KEGG: -
GO: GO:0005515
PFAM: PF00646 PF08387

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040053.01.T01	PNY06253.1	64.722	360	118	5	441	799	12	363	6.58E-144	448
MsG0780040053.01.T01	PNY06253.1	60.218	367	123	7	16	374	12	363	3.97E-126	402
MsG0780040053.01.T01	PNY06253.1	39.623	159	91	3	810	967	5	159	4.91E-19	103
MsG0780040053.01.T01	PNY06253.1	58.14	86	33	1	959	1044	267	349	8.72E-18	99.8

Showing 1 to 4 of 4 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040053.01.T01	Q9FZ52	27.02	396	208	12	18	363	15	379	1.59E-23	108

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040053.01.T01	A0A2K3NTA4	64.722	360	118	5	441	799	12	363	3.14e-144	448

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0280006398.01	MsG0780040053.01	PPI
MsG0280011351.01	MsG0780040053.01	PPI
MsG0380017413.01	MsG0780040053.01	PPI
MsG0380017414.01	MsG0780040053.01	PPI
MsG0380017479.01	MsG0780040053.01	PPI
MsG0380017513.01	MsG0780040053.01	PPI
MsG0480019459.01	MsG0780040053.01	PPI
MsG0480019463.01	MsG0780040053.01	PPI
MsG0580024321.01	MsG0780040053.01	PPI
MsG0780037367.01	MsG0780040053.01	PPI

Showing 1 to 10 of 77 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040053.01.T01	MTR_2g007450	54.907	428	186	5	426	851	1	423	3.54e-143	436
MsG0780040053.01.T01	MTR_2g007450	53.435	393	159	9	1	382	1	380	1.90e-118	372
MsG0780040053.01.T01	MTR_2g007450	57.143	84	29	2	972	1055	288	364	2.67e-21	98.6
MsG0780040053.01.T01	MTR_2g007450	46.809	94	47	1	877	967	70	163	1.00e-16	84.3
MsG0780040053.01.T01	MTR_7g083740	55.478	429	123	10	426	848	1	367	8.40e-132	405
MsG0780040053.01.T01	MTR_7g083740	53.351	388	100	9	3	378	2	320	8.25e-109	344
MsG0780040053.01.T01	MTR_7g083740	47.191	89	36	4	972	1057	231	311	1.82e-12	70.9
MsG0780040053.01.T01	MTR_1g053025	50.735	408	181	7	442	848	1	389	1.88e-116	365
MsG0780040053.01.T01	MTR_1g053025	49.867	375	153	10	17	382	1	349	6.27e-96	310
MsG0780040053.01.T01	MTR_1g053025	49.451	91	34	5	968	1056	254	334	1.78e-14	77.0

Showing 1 to 10 of 325 entries

Previous1 2 3 4 5…33Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040053.01.T01	AT1G16930	27.020	396	208	12	18	363	15	379	1.62e-24	108
MsG0780040053.01.T01	AT1G16930	33.200	250	132	10	420	666	1	218	4.56e-23	104
MsG0780040053.01.T01	AT1G16930	27.020	396	208	12	18	363	15	379	1.62e-24	108
MsG0780040053.01.T01	AT1G16930	33.200	250	132	10	420	666	1	218	4.56e-23	104
MsG0780040053.01.T01	AT1G16930	27.020	396	208	12	18	363	15	379	1.62e-24	108
MsG0780040053.01.T01	AT1G16930	33.200	250	132	10	420	666	1	218	4.56e-23	104
MsG0780040053.01.T01	AT1G78750	29.208	404	195	18	2	343	3	377	1.60e-23	105
MsG0780040053.01.T01	AT1G78750	25.941	478	247	20	442	848	17	458	4.04e-18	89.4
MsG0780040053.01.T01	AT1G78750	29.208	404	195	18	2	343	3	377	1.60e-23	105
MsG0780040053.01.T01	AT1G78750	25.941	478	247	20	442	848	17	458	4.04e-18	89.4

Showing 1 to 10 of 267 entries

Previous1 2 3 4 5…27Next

Find 253 sgRNAs with CRISPR-Local

Find 694 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCACAAATTCTTCC+AGG	0.388189	7:+72469575	MsG0780040053.01.T01:CDS
AAAAGATGATGAAGAAAATT+GGG	0.412690	7:+72470108	MsG0780040053.01.T01:CDS
AAAGGTCATCCACACGGATA+TGG	0.316697	7:-72473224	None:intergenic
AAATGAAGGACATTGAGTGA+TGG	0.599122	7:-72469294	None:intergenic
AAATTAGATAGTGCTTTCAA+CGG	0.589096	7:-72469516	None:intergenic
AAATTCTGAGATATGATGAC+AGG	0.585974	7:-72474254	None:intergenic
AACAAGAAGAAATGGGGCGA+CGG	0.574256	7:+72468704	None:intergenic
AACACCACCACCACCAGCGG+TGG	0.639768	7:+72472849	MsG0780040053.01.T01:CDS
AACCCTAATTGTAATTGTAG+AGG	0.568528	7:+72472762	MsG0780040053.01.T01:CDS
AACCCTTCACTTGGAAGCGA+CGG	0.541950	7:-72473320	None:intergenic

Showing 1 to 10 of 253 entries

Previous1 2 3 4 5…26Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCAAAACCCTTCACT+TGG	-	Chr7:72473332-72473351	None:intergenic	30.0%
AAAAGATCACAAATTCTTCC+AGG	+	Chr7:72469575-72469594	MsG0780040053.01.T01:CDS	30.0%
AAAGACACACTATCAAATTG+GGG	-	Chr7:72469850-72469869	None:intergenic	30.0%
AAAGACGCACTATCAAATTA+GGG	-	Chr7:72478243-72478262	None:intergenic	30.0%
AAATGAATACCATACACTGA+TGG	+	Chr7:72473854-72473873	MsG0780040053.01.T01:intron	30.0%
AAATTTGCCTTATGCTTTAG+GGG	+	Chr7:72479697-72479716	MsG0780040053.01.T01:intron	30.0%
AACACGGATATGATATGTAA+TGG	+	Chr7:72479563-72479582	MsG0780040053.01.T01:intron	30.0%
AACCCTAATTGTAATTGTAG+AGG	+	Chr7:72472762-72472781	MsG0780040053.01.T01:CDS	30.0%
ACAACCTCTATTAAAGTTCT+AGG	+	Chr7:72476574-72476593	MsG0780040053.01.T01:intron	30.0%
ACACCTTCAATATGAAATGT+CGG	-	Chr7:72478054-72478073	None:intergenic	30.0%

Showing 1 to 10 of 694 entries

Previous1 2 3 4 5…70Next

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	72468715	72479852	72468715	ID=MsG0780040053.01;Name=MsG0780040053.01
Chr7	mRNA	72468715	72479852	72468715	ID=MsG0780040053.01.T01;Parent=MsG0780040053.01;Name=MsG0780040053.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|0.18\|0.08\|0.75\|1\|1\|12\|0\|1088
Chr7	exon	72468715	72469596	72468715	ID=MsG0780040053.01.T01:exon:9830;Parent=MsG0780040053.01.T01
Chr7	exon	72469883	72470020	72469883	ID=MsG0780040053.01.T01:exon:9831;Parent=MsG0780040053.01.T01
Chr7	exon	72470106	72470218	72470106	ID=MsG0780040053.01.T01:exon:9832;Parent=MsG0780040053.01.T01
Chr7	exon	72470585	72470667	72470585	ID=MsG0780040053.01.T01:exon:9833;Parent=MsG0780040053.01.T01
Chr7	exon	72472761	72473680	72472761	ID=MsG0780040053.01.T01:exon:9834;Parent=MsG0780040053.01.T01
Chr7	exon	72473961	72474092	72473961	ID=MsG0780040053.01.T01:exon:9835;Parent=MsG0780040053.01.T01
Chr7	exon	72474177	72474435	72474177	ID=MsG0780040053.01.T01:exon:9836;Parent=MsG0780040053.01.T01
Chr7	exon	72476778	72476889	72476778	ID=MsG0780040053.01.T01:exon:9837;Parent=MsG0780040053.01.T01
Chr7	exon	72477355	72477613	72477355	ID=MsG0780040053.01.T01:exon:9838;Parent=MsG0780040053.01.T01
Chr7	exon	72478267	72478416	72478267	ID=MsG0780040053.01.T01:exon:9839;Parent=MsG0780040053.01.T01
Chr7	exon	72478491	72478573	72478491	ID=MsG0780040053.01.T01:exon:9840;Parent=MsG0780040053.01.T01
Chr7	exon	72479717	72479852	72479717	ID=MsG0780040053.01.T01:exon:9841;Parent=MsG0780040053.01.T01
Chr7	CDS	72468715	72469596	72468715	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72469883	72470020	72469883	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72470106	72470218	72470106	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72470585	72470667	72470585	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72472761	72473680	72472761	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72473961	72474092	72473961	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72474177	72474435	72474177	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72476778	72476889	72476778	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72477355	72477613	72477355	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72478267	72478416	72478267	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72478491	72478573	72478491	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01
Chr7	CDS	72479717	72479852	72479717	ID=MsG0780040053.01.T01:cds;Parent=MsG0780040053.01.T01

Gene Sequence

>MsG0780040053.01.T01

ATGGGGCGACGGAGGAAGAGAATTTCAGAAGCACCACCACCACCAGCGGTGGATAAGATCAGCAGTTTACCGGACGCAATTCTGAGCGGGATTCTGTCTCGTATCCCTACCAAAGAGGCAGTTGCCACAAGCATTCTCTCAAAGAGATGGACTCATCTCTGGAAATTTACCGACGGTATCAACTTCTCCGGCATCATCACAGTGAATAACATTGAATCTAATTACAGTTTAAATGAGTCTATATACTCGATTTTGGTCTCTCGCGACGCCGCTGGCTCTCATTTCATCGATAGTTTTAGTCTCGAAATTGAATATGGTAGTTATGATCTAGCCTTACGTTTTGGCATTCACAACGTCAACAAATGGATTAACTTCATTGTTCAACGCAAACTCAAGCATCTTCGTCTCCACGTCAGTGTGAATAGCCTTGATGATGATGATGATGATGATGATGATGAATATGGCATACCCAAATTGCCTGTTGGTATTCTCACATGTACAACACTTGTAAGCCTCGACCTCGGTTGGTTCCTTGTGAAGCCTTTCGATTCTTCTTCTATTAGATTTGGATTTGGATTTCCATCACTCAATGTCCTTCATTTGGACAATGTGATCTTTGATGAACTTCAAGATTTTTTGTTGCTTTTAGCTGGATGTCCAAATCTTGAGCATCTACGAGTTGTGGGTATATACTTCCATGATGAGGAAGTAGATCCGCTATTCATTCAAGAGTTTAAAAGCTTTAGCTTACCCAAATTGATTAGTGCACATATCACTCATTGTTGTTTGTCTTCATATTTTCCGTTGAAAGCACTATCTAATTTGAAGTCTCTGAGGATAGATACATTCATGTTTCGCACAAAAGATCACAAATTCTTCCAGGCGAATCAGCTGCAACGCCGTTACGATGATATTCCTATCTTTCATAATTTGTCCCGATTGGAGCTTTACGATGATTGGGAGGTGGTACCGCAAGTGCTCCAACACTGCCCTAAGCTTCAACATCTCAAACTTTACAAGGAAAAAGATGATGAAGAAAATTGGGTGGAACCAGAGCTTGTTCCTCAATGCCTGTCATCATACCTTAGAACTTGCACTATTCATGACTTTTCAGGCCTACACAGCGAGCTTATATCAAGGTTCATCCATTGTACGGGCACATGTATGCAAAATTCAGACTTGATTGCACAGCCACAGGGCAGAGGCGTGTATGAAGAAACCCTAATTGTAATTGTAGAGGCGCTGCACACAGTCCAATTGAGGGAAGAAGAAGCAATGCGTCGACGGAGGAGAATTTCTGAAGCAACACCACCACCACCAGCGGTGGATAAGATCAGCAGTCTACCTGACGCGATTCTGAGTCAGATTCTGTCTCGTCTCTCTACCAAAGAGGCAGTTGCCACAAGCATTCTGTCAAAGAGATGGACTCATCTCTGGAAATTTACCGACCATATCGAATTCACCGACATCACACTGAATGACATTGTTTCTACTTACAGATTCAATGATTCTATGTACTCCATTTTGGTCCCTCGTGAAGCCTCTGCCTCTCATTTCCTCAACAGATTCACCCTTGAAATTGAATACGGTAACACTGATCTTGCCTTTCGTTTCGGCATTCACAATGTCAACAAATGGATTAACCTTGTTGTTCAACATGGACTCAAGCATCTTTCTCTCCATATCCGTGTGGATGACCTTTATGATAATGACGACCAATTACCCAAATTGCCTATTGGTATTCTCACATGCACAACATTAGTGAGTCTCAACCTCCGTCGCTTCCAAGTGAAGGGTTTTGATTTTTCTTCCGTTGGATTTGGATTTCCATCGCTCAATATCCTTCAATTGAGTGATATGGTCTTTCATGAAGTTCGTGATTTTATGTTGCTTCTGGCTGGATGTCCGAATCTTGAGCATCTAGGAGCGGTAGATATACACTTCCATTGTGAGGAAGTAGATTCTCTTACCATTCAAGAGTTTAAAAGCTTAAGCTTACCCAAATTGACCACTGTTGATATCACTGAATGGTGGGCTTCATGGTTTCCGGTGAAAGCACTTTCCAATTCGAAGCATATGTGCTTGCATACATTCATGTTAAGCACAAAAGATCACAAAATCTACAAGCTCTACGAGGTGCCGCAACGCCCTTACAATGGTACTCTGATATTTCATAATTTGACCTACTTGGAGCTACATGATAACTGGGAGTTGGTAGCACAAGTGCTCCATTGCTGCCCTAAGCTTCAAAGTCTCGAACTTTACCAGGATTCATATGACGCAAGGAGGAGGAATGAAGAAGGTGGTCAAGAAAATTGGGTGGAACCAGAACTTGTTCCACAAAGCCTGTCATCATATCTCAGAATTTGCACCATTCATAACTTTTTAGGCCTAGAAAGCGAGCTTATGTTAGCAAAATATATTTTGAAGAAAGCTAAAAGTTTACTAATCTTGGAAATCTGGAACCAAAGGGAGCAAGCTGAAATAGAAAGAAGATTGTCCACATGCCCAAAGGCCTCTGCAACATCTCGGTCTCTCATTTTTAAAAGAATTTCATTTTGGTTCCTAGAGTTGAATGGGAATTTACCGTCATCGACCTTGGCCATGAATGGGATGGCAAAATGGGTTGGATCTTTTAGTTTCAATGATTCTATGTACTCCATTTTGGTCCCTCGTGAAGCCTCTGCCTCTCATTTCCTCAACAGACTCACCCTCGAAATCGAATACGGTAACACTGATCTTGCCTTTCGTTTCGGCTTTCACAATTTCTATAAATGGATTAACCTTGTTGTTCAACGCGGACTCAAGTATCTCCACCTCAGTATTTATGTGAATGGCATTTTGAGGTATATCCAATTACCCAAATTGCCAACTAGTATTCTCACATGTACAAAACTTGTAATTCATGTGCCGCAACGCCCTTACGATGGTACTCTTATATTTCATAATTTGACCCACTTGGAGCTCTATGATAATTGGGAGTTCGTAGCACAACTTGCACAAATGCTCCATTGCTGCCCTAAGCTTCAAAGTCTAAAACTTTACCAGGATTCATACGAGACGACGGGGAATGAAGAAGATGATCAAGAAAATTGGGTGGAACCAGAACTTGTTCCACAAAGCCTGTCATCGGGAAAGTTTGTCTACGTTGATCCATGTGCTTTAGGCTCAATTGAAAGTAAATATATCAATGTTCAGGTAAACCTTTTTTGTGATGCCACTATTGAACGGTTAACTGAGATCAGTTTATTGCATAACTCAGTCTAG

Protein sequence

>MsG0780040053.01.T01

MGRRRKRISEAPPPPAVDKISSLPDAILSGILSRIPTKEAVATSILSKRWTHLWKFTDGINFSGIITVNNIESNYSLNESIYSILVSRDAAGSHFIDSFSLEIEYGSYDLALRFGIHNVNKWINFIVQRKLKHLRLHVSVNSLDDDDDDDDDEYGIPKLPVGILTCTTLVSLDLGWFLVKPFDSSSIRFGFGFPSLNVLHLDNVIFDELQDFLLLLAGCPNLEHLRVVGIYFHDEEVDPLFIQEFKSFSLPKLISAHITHCCLSSYFPLKALSNLKSLRIDTFMFRTKDHKFFQANQLQRRYDDIPIFHNLSRLELYDDWEVVPQVLQHCPKLQHLKLYKEKDDEENWVEPELVPQCLSSYLRTCTIHDFSGLHSELISRFIHCTGTCMQNSDLIAQPQGRGVYEETLIVIVEALHTVQLREEEAMRRRRRISEATPPPPAVDKISSLPDAILSQILSRLSTKEAVATSILSKRWTHLWKFTDHIEFTDITLNDIVSTYRFNDSMYSILVPREASASHFLNRFTLEIEYGNTDLAFRFGIHNVNKWINLVVQHGLKHLSLHIRVDDLYDNDDQLPKLPIGILTCTTLVSLNLRRFQVKGFDFSSVGFGFPSLNILQLSDMVFHEVRDFMLLLAGCPNLEHLGAVDIHFHCEEVDSLTIQEFKSLSLPKLTTVDITEWWASWFPVKALSNSKHMCLHTFMLSTKDHKIYKLYEVPQRPYNGTLIFHNLTYLELHDNWELVAQVLHCCPKLQSLELYQDSYDARRRNEEGGQENWVEPELVPQSLSSYLRICTIHNFLGLESELMLAKYILKKAKSLLILEIWNQREQAEIERRLSTCPKASATSRSLIFKRISFWFLELNGNLPSSTLAMNGMAKWVGSFSFNDSMYSILVPREASASHFLNRLTLEIEYGNTDLAFRFGFHNFYKWINLVVQRGLKYLHLSIYVNGILRYIQLPKLPTSILTCTKLVIHVPQRPYDGTLIFHNLTHLELYDNWEFVAQLAQMLHCCPKLQSLKLYQDSYETTGNEEDDQENWVEPELVPQSLSSGKFVYVDPCALGSIESKYINVQVNLFCDATIERLTEISLLHNSV*