Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027183.01.T01 | XP_003619012.1 | 80.435 | 138 | 22 | 1 | 48 | 185 | 254 | 386 | 7.80E-67 | 219 |
| MsG0580027183.01.T01 | XP_003619012.1 | 70 | 70 | 21 | 0 | 30 | 99 | 171 | 240 | 3.55E-19 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027183.01.T01 | Q9C503 | 36.449 | 214 | 102 | 4 | 3 | 184 | 142 | 353 | 4.41E-35 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027183.01.T01 | G7KQ57 | 80.435 | 138 | 22 | 1 | 48 | 185 | 254 | 386 | 3.72e-67 | 219 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048727.01 | MsG0580027183.01 | 0.807235 | 5.580207e-50 | 3.091786e-47 |
| MsG0080049070.01 | MsG0580027183.01 | 0.851916 | 6.497070e-61 | 1.335068e-57 |
| MsG0180000489.01 | MsG0580027183.01 | 0.814270 | 1.677949e-51 | 1.120797e-48 |
| MsG0180000549.01 | MsG0580027183.01 | 0.857674 | 1.389972e-62 | 3.458003e-59 |
| MsG0180000793.01 | MsG0580027183.01 | 0.821466 | 3.978792e-53 | 3.239353e-50 |
| MsG0180000833.01 | MsG0580027183.01 | 0.841306 | 5.148420e-58 | 7.533005e-55 |
| MsG0180000834.01 | MsG0580027183.01 | 0.840945 | 6.403836e-58 | 9.266126e-55 |
| MsG0180001137.01 | MsG0580027183.01 | 0.813330 | 2.702929e-51 | 1.759959e-48 |
| MsG0180001175.01 | MsG0580027183.01 | 0.831511 | 1.601166e-55 | 1.741390e-52 |
| MsG0180001270.01 | MsG0580027183.01 | 0.806501 | 7.976449e-50 | 4.336377e-47 |
| MsG0180001548.01 | MsG0580027183.01 | 0.876202 | 1.684375e-68 | 8.094699e-65 |
| MsG0180001704.01 | MsG0580027183.01 | 0.803087 | 4.121743e-49 | 2.052566e-46 |
| MsG0180002700.01 | MsG0580027183.01 | 0.862564 | 4.634605e-64 | 1.363221e-60 |
| MsG0180003196.01 | MsG0580027183.01 | 0.854323 | 1.328982e-61 | 2.956564e-58 |
| MsG0180003320.01 | MsG0580027183.01 | -0.814191 | 1.747057e-51 | 1.164417e-48 |
| MsG0180003547.01 | MsG0580027183.01 | 0.814743 | 1.318780e-51 | 8.921905e-49 |
| MsG0180003942.01 | MsG0580027183.01 | -0.827037 | 1.951579e-54 | 1.862069e-51 |
| MsG0180004733.01 | MsG0580027183.01 | 0.800188 | 1.620410e-48 | 7.497238e-46 |
| MsG0180004792.01 | MsG0580027183.01 | 0.842494 | 2.498216e-58 | 3.794623e-55 |
| MsG0180005137.01 | MsG0580027183.01 | 0.812437 | 4.240914e-51 | 2.696596e-48 |
| MsG0180005395.01 | MsG0580027183.01 | -0.826662 | 2.398348e-54 | 2.263668e-51 |
| MsG0180005612.01 | MsG0580027183.01 | 0.835681 | 1.456350e-56 | 1.793996e-53 |
| MsG0180005636.01 | MsG0580027183.01 | -0.817295 | 3.551127e-52 | 2.575933e-49 |
| MsG0180005822.01 | MsG0580027183.01 | 0.826726 | 2.315528e-54 | 2.189401e-51 |
| MsG0180005918.01 | MsG0580027183.01 | -0.811559 | 6.588868e-51 | 4.091654e-48 |
| MsG0180005964.01 | MsG0580027183.01 | 0.848823 | 4.792804e-60 | 8.906395e-57 |
| MsG0180006028.01 | MsG0580027183.01 | 0.823851 | 1.108544e-53 | 9.657665e-51 |
| MsG0180006135.01 | MsG0580027183.01 | 0.802941 | 4.417958e-49 | 2.191963e-46 |
| MsG0180006217.01 | MsG0580027183.01 | 0.843964 | 1.013192e-58 | 1.611671e-55 |
| MsG0280011110.01 | MsG0580027183.01 | -0.822861 | 1.888056e-53 | 1.599494e-50 |
| MsG0280011180.01 | MsG0580027183.01 | 0.814474 | 1.512740e-51 | 1.016069e-48 |
| MsG0280011218.01 | MsG0580027183.01 | 0.838180 | 3.351307e-57 | 4.453043e-54 |
| MsG0380012868.01 | MsG0580027183.01 | 0.868453 | 6.458639e-66 | 2.337313e-62 |
| MsG0380014909.01 | MsG0580027183.01 | 0.808513 | 2.984505e-50 | 1.709836e-47 |
| MsG0480018592.01 | MsG0580027183.01 | 0.832266 | 1.042690e-55 | 1.159347e-52 |
| MsG0480018644.01 | MsG0580027183.01 | 0.836754 | 7.774174e-57 | 9.890980e-54 |
| MsG0480018666.01 | MsG0580027183.01 | 0.813625 | 2.328850e-51 | 1.528587e-48 |
| MsG0480018676.01 | MsG0580027183.01 | 0.869296 | 3.444768e-66 | 1.286044e-62 |
| MsG0480019644.01 | MsG0580027183.01 | 0.805054 | 1.606689e-49 | 8.416738e-47 |
| MsG0480019812.01 | MsG0580027183.01 | 0.866734 | 2.295938e-65 | 7.820202e-62 |
| MsG0480020363.01 | MsG0580027183.01 | 0.803061 | 4.171947e-49 | 2.076216e-46 |
| MsG0480020473.01 | MsG0580027183.01 | 0.842999 | 1.834655e-58 | 2.830552e-55 |
| MsG0480020596.01 | MsG0580027183.01 | 0.874793 | 5.114248e-68 | 2.333083e-64 |
| MsG0480020753.01 | MsG0580027183.01 | 0.827020 | 1.969561e-54 | 1.878327e-51 |
| MsG0480021038.01 | MsG0580027183.01 | 0.883519 | 4.187856e-71 | 2.663903e-67 |
| MsG0480021101.01 | MsG0580027183.01 | 0.869128 | 3.904928e-66 | 1.448989e-62 |
| MsG0480021124.01 | MsG0580027183.01 | 0.805858 | 1.089861e-49 | 5.828757e-47 |
| MsG0480021213.01 | MsG0580027183.01 | 0.880186 | 6.754303e-70 | 3.769145e-66 |
| MsG0480021248.01 | MsG0580027183.01 | 0.812417 | 4.283695e-51 | 2.722296e-48 |
| MsG0480021377.01 | MsG0580027183.01 | 0.829346 | 5.420561e-55 | 5.533468e-52 |
| MsG0480021783.01 | MsG0580027183.01 | 0.811827 | 5.760835e-51 | 3.602797e-48 |
| MsG0480021967.01 | MsG0580027183.01 | 0.840123 | 1.050685e-57 | 1.482189e-54 |
| MsG0480022113.01 | MsG0580027183.01 | 0.832920 | 7.176365e-56 | 8.137009e-53 |
| MsG0480022154.01 | MsG0580027183.01 | 0.848816 | 4.815362e-60 | 8.946408e-57 |
| MsG0480022162.01 | MsG0580027183.01 | 0.832529 | 8.972687e-56 | 1.005610e-52 |
| MsG0480022240.01 | MsG0580027183.01 | 0.831248 | 1.859263e-55 | 2.006062e-52 |
| MsG0480022773.01 | MsG0580027183.01 | 0.810895 | 9.180031e-51 | 5.601846e-48 |
| MsG0480023406.01 | MsG0580027183.01 | 0.844785 | 6.096828e-59 | 9.951528e-56 |
| MsG0480023466.01 | MsG0580027183.01 | 0.829480 | 5.029006e-55 | 5.153226e-52 |
| MsG0480023649.01 | MsG0580027183.01 | 0.801698 | 7.964876e-49 | 3.828642e-46 |
| MsG0480024011.01 | MsG0580027183.01 | 0.814414 | 1.559752e-51 | 1.045956e-48 |
| MsG0580024950.01 | MsG0580027183.01 | 0.817645 | 2.962297e-52 | 2.169509e-49 |
| MsG0580025252.01 | MsG0580027183.01 | 0.807543 | 4.801780e-50 | 2.681799e-47 |
| MsG0580025366.01 | MsG0580027183.01 | 0.822567 | 2.211144e-53 | 1.857684e-50 |
| MsG0580025610.01 | MsG0580027183.01 | 0.836358 | 9.804866e-57 | 1.232766e-53 |
| MsG0580025627.01 | MsG0580027183.01 | 0.831224 | 1.884139e-55 | 2.031694e-52 |
| MsG0380016057.01 | MsG0580027183.01 | 0.835480 | 1.637632e-56 | 2.005095e-53 |
| MsG0380016172.01 | MsG0580027183.01 | 0.817301 | 3.541012e-52 | 2.568998e-49 |
| MsG0380016188.01 | MsG0580027183.01 | -0.830484 | 2.861071e-55 | 3.018281e-52 |
| MsG0380016543.01 | MsG0580027183.01 | 0.800704 | 1.272036e-48 | 5.962800e-46 |
| MsG0380016568.01 | MsG0580027183.01 | 0.811044 | 8.524282e-51 | 5.222235e-48 |
| MsG0380016764.01 | MsG0580027183.01 | 0.803413 | 3.527304e-49 | 1.771425e-46 |
| MsG0380017143.01 | MsG0580027183.01 | 0.836865 | 7.283376e-57 | 9.297430e-54 |
| MsG0380017162.01 | MsG0580027183.01 | 0.800500 | 1.399885e-48 | 6.528467e-46 |
| MsG0380017411.01 | MsG0580027183.01 | -0.845846 | 3.148086e-59 | 5.316456e-56 |
| MsG0380017427.01 | MsG0580027183.01 | 0.898225 | 6.535679e-77 | 7.654901e-73 |
| MsG0480018337.01 | MsG0580027183.01 | 0.915227 | 7.560031e-85 | 1.955751e-80 |
| MsG0480018338.01 | MsG0580027183.01 | 0.857746 | 1.323169e-62 | 3.299695e-59 |
| MsG0580027183.01 | MsG0580027189.01 | 0.891476 | 3.836194e-74 | 3.368749e-70 |
| MsG0580027183.01 | MsG0580027394.01 | 0.800808 | 1.211091e-48 | 5.692254e-46 |
| MsG0580027183.01 | MsG0580027887.01 | 0.806542 | 7.819993e-50 | 4.255888e-47 |
| MsG0580027183.01 | MsG0580028306.01 | 0.815472 | 9.085833e-52 | 6.270563e-49 |
| MsG0580027183.01 | MsG0580028419.01 | 0.800846 | 1.189648e-48 | 5.597179e-46 |
| MsG0580027183.01 | MsG0580028422.01 | 0.815058 | 1.122985e-51 | 7.662042e-49 |
| MsG0580027183.01 | MsG0580028912.01 | -0.802187 | 6.319437e-49 | 3.075728e-46 |
| MsG0580027183.01 | MsG0580029325.01 | 0.805250 | 1.461780e-49 | 7.695950e-47 |
| MsG0580027183.01 | MsG0580029862.01 | 0.827261 | 1.725317e-54 | 1.657162e-51 |
| MsG0580027183.01 | MsG0680030627.01 | 0.801296 | 9.626959e-49 | 4.581143e-46 |
| MsG0580027183.01 | MsG0680030957.01 | 0.817481 | 3.224842e-52 | 2.351354e-49 |
| MsG0580027183.01 | MsG0680031826.01 | 0.847852 | 8.894127e-60 | 1.601865e-56 |
| MsG0580027183.01 | MsG0680031852.01 | -0.807677 | 4.496983e-50 | 2.520347e-47 |
| MsG0580027183.01 | MsG0680032191.01 | 0.819777 | 9.719975e-53 | 7.551151e-50 |
| MsG0580027183.01 | MsG0680032850.01 | 0.887056 | 1.995414e-72 | 1.461250e-68 |
| MsG0580027183.01 | MsG0780035965.01 | 0.858122 | 1.023209e-62 | 2.583850e-59 |
| MsG0580027183.01 | MsG0780035976.01 | -0.828195 | 1.028827e-54 | 1.015439e-51 |
| MsG0580027183.01 | MsG0780036008.01 | 0.809260 | 2.065609e-50 | 1.207078e-47 |
| MsG0580027183.01 | MsG0780036620.01 | 0.823290 | 1.500226e-53 | 1.286315e-50 |
| MsG0580027183.01 | MsG0780036792.01 | 0.800108 | 1.682488e-48 | 7.768601e-46 |
| MsG0580027183.01 | MsG0780037351.01 | 0.838023 | 3.678046e-57 | 4.864928e-54 |
| MsG0580027183.01 | MsG0780037363.01 | 0.857659 | 1.404267e-62 | 3.491857e-59 |
| MsG0580027183.01 | MsG0780037507.01 | 0.824952 | 6.105454e-54 | 5.488906e-51 |
| MsG0580027183.01 | MsG0780038313.01 | -0.818068 | 2.376521e-52 | 1.760803e-49 |
| MsG0580027183.01 | MsG0780038784.01 | 0.801273 | 9.731257e-49 | 4.628083e-46 |
| MsG0580027183.01 | MsG0780039161.01 | 0.847068 | 1.460913e-59 | 2.566222e-56 |
| MsG0580027183.01 | MsG0780039675.01 | 0.801451 | 8.947506e-49 | 4.274447e-46 |
| MsG0580027183.01 | MsG0780039902.01 | 0.838688 | 2.478078e-57 | 3.344642e-54 |
| MsG0580027183.01 | MsG0780039955.01 | 0.802879 | 4.548884e-49 | 2.253451e-46 |
| MsG0580027183.01 | MsG0780040236.01 | 0.805094 | 1.575428e-49 | 8.261543e-47 |
| MsG0580027183.01 | MsG0780040343.01 | 0.803177 | 3.947237e-49 | 1.970359e-46 |
| MsG0580027183.01 | MsG0780040550.01 | 0.894297 | 2.814413e-75 | 2.781386e-71 |
| MsG0580027183.01 | MsG0780040684.01 | 0.888275 | 6.822156e-73 | 5.251007e-69 |
| MsG0580027183.01 | MsG0780040826.01 | -0.823333 | 1.465299e-53 | 1.257892e-50 |
| MsG0580027183.01 | MsG0780040965.01 | 0.837317 | 5.582828e-57 | 7.224606e-54 |
| MsG0580027183.01 | MsG0780041174.01 | 0.822186 | 2.710946e-53 | 2.252624e-50 |
| MsG0580027183.01 | MsG0780041331.01 | 0.878177 | 3.467956e-69 | 1.792915e-65 |
| MsG0580027183.01 | MsG0780041361.01 | 0.855897 | 4.635336e-62 | 1.086578e-58 |
| MsG0580027183.01 | MsG0780041385.01 | 0.810584 | 1.071871e-50 | 6.486391e-48 |
| MsG0580027183.01 | MsG0780041474.01 | 0.800815 | 1.207599e-48 | 5.676714e-46 |
| MsG0580027183.01 | MsG0780041828.01 | 0.816779 | 4.637676e-52 | 3.317047e-49 |
| MsG0580027183.01 | MsG0880041847.01 | 0.887796 | 1.041287e-72 | 7.858351e-69 |
| MsG0580027183.01 | MsG0880042044.01 | 0.808490 | 3.019083e-50 | 1.728602e-47 |
| MsG0580027183.01 | MsG0880042086.01 | 0.862163 | 6.153712e-64 | 1.785036e-60 |
| MsG0580027183.01 | MsG0880042415.01 | 0.891900 | 2.602132e-74 | 2.324666e-70 |
| MsG0580027183.01 | MsG0880043024.01 | 0.829168 | 5.987001e-55 | 6.079409e-52 |
| MsG0580027183.01 | MsG0880043107.01 | 0.814506 | 1.488460e-51 | 1.000633e-48 |
| MsG0580027183.01 | MsG0880043476.01 | 0.822076 | 2.874245e-53 | 2.380875e-50 |
| MsG0580027183.01 | MsG0880044487.01 | 0.802540 | 5.346222e-49 | 2.625633e-46 |
| MsG0580027183.01 | MsG0880044712.01 | -0.808267 | 3.368811e-50 | 1.917669e-47 |
| MsG0580027183.01 | MsG0880044901.01 | -0.813375 | 2.642107e-51 | 1.722540e-48 |
| MsG0580027183.01 | MsG0880045327.01 | 0.839642 | 1.402214e-57 | 1.948534e-54 |
| MsG0580027183.01 | MsG0880045402.01 | 0.807407 | 5.132508e-50 | 2.856481e-47 |
| MsG0580027183.01 | MsG0880045648.01 | 0.852599 | 4.152995e-61 | 8.722646e-58 |
| MsG0580027183.01 | MsG0880045724.01 | -0.805670 | 1.193391e-49 | 6.351543e-47 |
| MsG0580027183.01 | MsG0880046054.01 | 0.815806 | 7.656244e-52 | 5.332079e-49 |
| MsG0580027183.01 | MsG0880046124.01 | 0.825456 | 4.642401e-54 | 4.233360e-51 |
| MsG0580027183.01 | MsG0880046200.01 | 0.818394 | 2.005348e-52 | 1.499376e-49 |
| MsG0580027183.01 | MsG0880046434.01 | -0.842567 | 2.389776e-58 | 3.638203e-55 |
| MsG0580027183.01 | MsG0880046765.01 | 0.820050 | 8.418047e-53 | 6.589989e-50 |
| MsG0580027183.01 | MsG0880046791.01 | 0.806603 | 7.593557e-50 | 4.138883e-47 |
| MsG0580027183.01 | MsG0880046946.01 | -0.826351 | 2.845967e-54 | 2.662415e-51 |
| MsG0580027183.01 | MsG0880047312.01 | -0.851460 | 8.746318e-61 | 1.771506e-57 |
| MsG0580027183.01 | MsG0880047383.01 | -0.800071 | 1.712033e-48 | 7.897745e-46 |
| MsG0580027183.01 | MsG0880047392.01 | 0.815445 | 9.213650e-52 | 6.353679e-49 |
| MsG0580027183.01 | MsG0880047578.01 | 0.818133 | 2.297434e-52 | 1.705321e-49 |
| MsG0580027183.01 | MsG0880047656.01 | 0.801003 | 1.105277e-48 | 5.221143e-46 |
| MsG0280006571.01 | MsG0580027183.01 | 0.811834 | 5.741160e-51 | 3.591154e-48 |
| MsG0280006607.01 | MsG0580027183.01 | 0.815197 | 1.045741e-51 | 7.161986e-49 |
| MsG0280006718.01 | MsG0580027183.01 | 0.822892 | 1.857164e-53 | 1.574650e-50 |
| MsG0280007406.01 | MsG0580027183.01 | 0.859971 | 2.858432e-63 | 7.689441e-60 |
| MsG0280007647.01 | MsG0580027183.01 | 0.803610 | 3.211711e-49 | 1.621124e-46 |
| MsG0280007852.01 | MsG0580027183.01 | 0.878994 | 1.789686e-69 | 9.541970e-66 |
| MsG0280007853.01 | MsG0580027183.01 | 0.886264 | 3.977700e-72 | 2.821231e-68 |
| MsG0280008343.01 | MsG0580027183.01 | 0.805728 | 1.160480e-49 | 6.185880e-47 |
| MsG0280008388.01 | MsG0580027183.01 | 0.825967 | 3.511420e-54 | 3.249326e-51 |
| MsG0280008394.01 | MsG0580027183.01 | 0.800386 | 1.476857e-48 | 6.867649e-46 |
| MsG0280008452.01 | MsG0580027183.01 | -0.823324 | 1.472373e-53 | 1.263632e-50 |
| MsG0280009431.01 | MsG0580027183.01 | 0.815304 | 9.901844e-52 | 6.801595e-49 |
| MsG0280009445.01 | MsG0580027183.01 | 0.819833 | 9.436090e-53 | 7.342045e-50 |
| MsG0280009675.01 | MsG0580027183.01 | 0.808700 | 2.722368e-50 | 1.567219e-47 |
| MsG0280009756.01 | MsG0580027183.01 | 0.820243 | 7.604431e-53 | 5.984462e-50 |
| MsG0280010353.01 | MsG0580027183.01 | 0.837630 | 4.641020e-57 | 6.064757e-54 |
| MsG0280010376.01 | MsG0580027183.01 | 0.815588 | 8.560430e-52 | 5.926409e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027183.01.T01 | MTR_6g032880 | 80.435 | 138 | 22 | 1 | 48 | 185 | 254 | 386 | 9.44e-71 | 219 |
| MsG0580027183.01.T01 | MTR_6g032880 | 70.000 | 70 | 21 | 0 | 30 | 99 | 171 | 240 | 4.29e-23 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027183.01.T01 | AT1G55370 | 36.449 | 214 | 102 | 4 | 3 | 184 | 142 | 353 | 4.49e-36 | 129 |
Find 35 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACATGATATTATATATT+TGG | 0.110960 | 5:-55718762 | None:intergenic |
| GAACCTTGCAACGGTCATTT+TGG | 0.155770 | 5:+55716622 | MsG0580027183.01.T01:CDS |
| TCTTGTGGACTTAATACTAT+TGG | 0.306506 | 5:-55718708 | None:intergenic |
| TGGGAAAGATTTGAAGGCTT+TGG | 0.332452 | 5:+55716642 | MsG0580027183.01.T01:CDS |
| TATATTTGGATTGTGTAGAT+AGG | 0.365670 | 5:-55718748 | None:intergenic |
| TCAGTATTAGTTGAAAGAAA+TGG | 0.369710 | 5:+55718588 | MsG0580027183.01.T01:CDS |
| TTTAATCCAATCATTTCATA+TGG | 0.389242 | 5:-55717847 | None:intergenic |
| AGATATGAGTGGTGAGGAAA+TGG | 0.407819 | 5:+55718179 | MsG0580027183.01.T01:CDS |
| AAAGGACCATATGAAATGAT+TGG | 0.428403 | 5:+55717841 | MsG0580027183.01.T01:CDS |
| CTGTTCAGTCCAGGCTCATC+AGG | 0.435338 | 5:+55718627 | MsG0580027183.01.T01:CDS |
| TATTAAGTCCACAAGATGTA+TGG | 0.449867 | 5:+55718715 | MsG0580027183.01.T01:CDS |
| CCTCCTTTCCATACATCTTG+TGG | 0.476094 | 5:-55718723 | None:intergenic |
| CTGATGAGCCTGGACTGAAC+AGG | 0.479462 | 5:-55718626 | None:intergenic |
| TCTTTCCCTCTTCAAATGAC+AGG | 0.486076 | 5:+55717931 | MsG0580027183.01.T01:CDS |
| TCGATCAGTGTAAAACTTCG+AGG | 0.495155 | 5:-55718252 | None:intergenic |
| GTGGACTTAATACTATTGGT+TGG | 0.500437 | 5:-55718704 | None:intergenic |
| TACTGTCAAATGACTCAAGA+TGG | 0.504674 | 5:-55717956 | None:intergenic |
| CTTTCAATTCCTGATGAGCC+TGG | 0.508570 | 5:-55718636 | None:intergenic |
| ATTAAAATACATTGTGACAT+TGG | 0.516339 | 5:+55717864 | MsG0580027183.01.T01:CDS |
| ATTGTGACATTGGAAGAAGA+TGG | 0.536047 | 5:+55717874 | MsG0580027183.01.T01:CDS |
| ACATTGGAAGAAGATGGATT+AGG | 0.545100 | 5:+55717880 | MsG0580027183.01.T01:CDS |
| GACTTAATACTATTGGTTGG+AGG | 0.550217 | 5:-55718701 | None:intergenic |
| GAAACATACCTGTTCAGTCC+AGG | 0.552112 | 5:+55718618 | MsG0580027183.01.T01:CDS |
| TTCCCAAAATGACCGTTGCA+AGG | 0.563787 | 5:-55716625 | None:intergenic |
| ATGGAACCTGTCATTTGAAG+AGG | 0.572878 | 5:-55717937 | None:intergenic |
| AAAGCAATGCAGAAGACTAG+TGG | 0.573246 | 5:+55716600 | None:intergenic |
| TAGTGAAGATATGAGTGGTG+AGG | 0.575265 | 5:+55718173 | MsG0580027183.01.T01:CDS |
| TGGAACCTGTCATTTGAAGA+GGG | 0.598388 | 5:-55717936 | None:intergenic |
| GAGGATAGTGAAGATATGAG+TGG | 0.603114 | 5:+55718168 | MsG0580027183.01.T01:CDS |
| TAATCAGGACAATGAAGCAG+AGG | 0.615604 | 5:+55718149 | MsG0580027183.01.T01:intron |
| AAGTATGCTTACATATGTGT+TGG | 0.616114 | 5:+55718666 | MsG0580027183.01.T01:CDS |
| AGTCCACAAGATGTATGGAA+AGG | 0.619952 | 5:+55718720 | MsG0580027183.01.T01:CDS |
| CCACAAGATGTATGGAAAGG+AGG | 0.629918 | 5:+55718723 | MsG0580027183.01.T01:CDS |
| CAGGTAGTATTATTAAACAA+AGG | 0.634880 | 5:+55717823 | MsG0580027183.01.T01:intron |
| AGACTAGTGGAACCTTGCAA+CGG | 0.678469 | 5:+55716613 | MsG0580027183.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAAAGTTGTATTGA+TGG | + | Chr5:55717657-55717676 | MsG0580027183.01.T01:intron | 15.0% |
| !! | TTAAGATGTTTATTCATAAA+TGG | - | Chr5:55718340-55718359 | None:intergenic | 15.0% |
| !! | AAATTGTGAGAAAAAACATA+AGG | - | Chr5:55717758-55717777 | None:intergenic | 20.0% |
| !! | ATTAAAATACATTGTGACAT+TGG | + | Chr5:55717864-55717883 | MsG0580027183.01.T01:CDS | 20.0% |
| !! | TAAGATTAAAACAAAGTCAA+TGG | + | Chr5:55718376-55718395 | MsG0580027183.01.T01:intron | 20.0% |
| !! | TTTAATCCAATCATTTCATA+TGG | - | Chr5:55717850-55717869 | None:intergenic | 20.0% |
| !!! | ATGTAATTTTGATCAATGAA+GGG | + | Chr5:55718483-55718502 | MsG0580027183.01.T01:intron | 20.0% |
| !!! | CGTTTGTTTTTTTTTTATCA+GGG | + | Chr5:55718555-55718574 | MsG0580027183.01.T01:intron | 20.0% |
| !!! | CTTACACATTCTTATTATTT+TGG | + | Chr5:55717614-55717633 | MsG0580027183.01.T01:intron | 20.0% |
| !!! | TATGTAATTTTGATCAATGA+AGG | + | Chr5:55718482-55718501 | MsG0580027183.01.T01:intron | 20.0% |
| !!! | TCGTTTGTTTTTTTTTTATC+AGG | + | Chr5:55718554-55718573 | MsG0580027183.01.T01:intron | 20.0% |
| ! | AAAATAAACTCCGATTCAAT+AGG | - | Chr5:55718042-55718061 | None:intergenic | 25.0% |
| ! | AGAAAGGATTTGGAAAAATA+TGG | + | Chr5:55718085-55718104 | MsG0580027183.01.T01:intron | 25.0% |
| ! | CAAAGATGTTCCTTTATAAT+GGG | + | Chr5:55716789-55716808 | MsG0580027183.01.T01:intron | 25.0% |
| ! | CAGGTAGTATTATTAAACAA+AGG | + | Chr5:55717823-55717842 | MsG0580027183.01.T01:intron | 25.0% |
| ! | TATATTTGGATTGTGTAGAT+AGG | - | Chr5:55718751-55718770 | None:intergenic | 25.0% |
| ! | TCAGTATTAGTTGAAAGAAA+TGG | + | Chr5:55718588-55718607 | MsG0580027183.01.T01:CDS | 25.0% |
| !! | ATTTCAAATTGGTTCTTCAT+AGG | + | Chr5:55716817-55716836 | MsG0580027183.01.T01:intron | 25.0% |
| !!! | CACATTCTTATTATTTTGGT+TGG | + | Chr5:55717618-55717637 | MsG0580027183.01.T01:intron | 25.0% |
| !!! | TAAGCAATTTTAACCAAGTT+GGG | + | Chr5:55718119-55718138 | MsG0580027183.01.T01:intron | 25.0% |
| !!! | TTAAGCAATTTTAACCAAGT+TGG | + | Chr5:55718118-55718137 | MsG0580027183.01.T01:intron | 25.0% |
| AAAGGACCATATGAAATGAT+TGG | + | Chr5:55717841-55717860 | MsG0580027183.01.T01:CDS | 30.0% | |
| AACACTTGATTTACAATCAG+AGG | - | Chr5:55717121-55717140 | None:intergenic | 30.0% | |
| AAGACACAAAGCAATTATAC+TGG | - | Chr5:55717380-55717399 | None:intergenic | 30.0% | |
| AAGTATGCTTACATATGTGT+TGG | + | Chr5:55718666-55718685 | MsG0580027183.01.T01:CDS | 30.0% | |
| AAGTTGAGAAAAACACAAGA+AGG | - | Chr5:55717539-55717558 | None:intergenic | 30.0% | |
| ACATTGAAGATATCTTATGC+AGG | + | Chr5:55717804-55717823 | MsG0580027183.01.T01:intron | 30.0% | |
| AGTTGAGAAAAACACAAGAA+GGG | - | Chr5:55717538-55717557 | None:intergenic | 30.0% | |
| ATACACTTGCACATATACTT+AGG | + | Chr5:55718314-55718333 | MsG0580027183.01.T01:intron | 30.0% | |
| CAAATTAGGCAAAAGATCAT+TGG | + | Chr5:55716848-55716867 | MsG0580027183.01.T01:intron | 30.0% | |
| GAAATCCATTCCCATTATAA+AGG | - | Chr5:55716802-55716821 | None:intergenic | 30.0% | |
| GCAAAGATGTTCCTTTATAA+TGG | + | Chr5:55716788-55716807 | MsG0580027183.01.T01:intron | 30.0% | |
| TATTAAGTCCACAAGATGTA+TGG | + | Chr5:55718715-55718734 | MsG0580027183.01.T01:CDS | 30.0% | |
| TCTTGTGGACTTAATACTAT+TGG | - | Chr5:55718711-55718730 | None:intergenic | 30.0% | |
| TCTTTCACACCTCTATATAA+AGG | + | Chr5:55716927-55716946 | MsG0580027183.01.T01:intron | 30.0% | |
| TTATAAAGGAACATCTTTGC+AGG | - | Chr5:55716788-55716807 | None:intergenic | 30.0% | |
| ! | AATGGGAATGGATTTCAAAT+TGG | + | Chr5:55716806-55716825 | MsG0580027183.01.T01:intron | 30.0% |
| ! | ATGTTCCTTTATAATGGGAA+TGG | + | Chr5:55716794-55716813 | MsG0580027183.01.T01:intron | 30.0% |
| ! | CAATGATCTTTTGCCTAATT+TGG | - | Chr5:55716850-55716869 | None:intergenic | 30.0% |
| !! | AAGCAATTTTAACCAAGTTG+GGG | + | Chr5:55718120-55718139 | MsG0580027183.01.T01:intron | 30.0% |
| !! | TCATTTTGGGAAAGATTTGA+AGG | + | Chr5:55716636-55716655 | MsG0580027183.01.T01:CDS | 30.0% |
| !!! | CTTATTATTTTGGTTGGCAA+AGG | + | Chr5:55717624-55717643 | MsG0580027183.01.T01:intron | 30.0% |
| AAGTTGGGGAACAAATAATC+AGG | + | Chr5:55718134-55718153 | MsG0580027183.01.T01:intron | 35.0% | |
| ACATTCTAGTGAAATCTCCT+TGG | + | Chr5:55717312-55717331 | MsG0580027183.01.T01:intron | 35.0% | |
| ATAAACTCCGATTCAATAGG+CGG | - | Chr5:55718039-55718058 | None:intergenic | 35.0% | |
| ATTGTGACATTGGAAGAAGA+TGG | + | Chr5:55717874-55717893 | MsG0580027183.01.T01:CDS | 35.0% | |
| CATAGGACAACAACCAAATT+AGG | + | Chr5:55716834-55716853 | MsG0580027183.01.T01:intron | 35.0% | |
| CTGTCTCTTGAGGTTATAAA+AGG | + | Chr5:55717714-55717733 | MsG0580027183.01.T01:intron | 35.0% | |
| GATTTAAACTCTGTCTCTTG+AGG | + | Chr5:55717704-55717723 | MsG0580027183.01.T01:intron | 35.0% | |
| GTCTTCACTCCTTTATATAG+AGG | - | Chr5:55716939-55716958 | None:intergenic | 35.0% | |
| GTGGACTTAATACTATTGGT+TGG | - | Chr5:55718707-55718726 | None:intergenic | 35.0% | |
| GTTGAGAAAAACACAAGAAG+GGG | - | Chr5:55717537-55717556 | None:intergenic | 35.0% | |
| TACTGTCAAATGACTCAAGA+TGG | - | Chr5:55717959-55717978 | None:intergenic | 35.0% | |
| TATCGTTAAACCTATCGTTG+AGG | - | Chr5:55718297-55718316 | None:intergenic | 35.0% | |
| TGATTATTTGTTCCCCAACT+TGG | - | Chr5:55718135-55718154 | None:intergenic | 35.0% | |
| TTGAGAAAAACACAAGAAGG+GGG | - | Chr5:55717536-55717555 | None:intergenic | 35.0% | |
| TTGATTGTGTTCTTGAGCAT+AGG | + | Chr5:55717217-55717236 | MsG0580027183.01.T01:intron | 35.0% | |
| ! | AAGTTTTACACTGATCGACA+GGG | + | Chr5:55718257-55718276 | MsG0580027183.01.T01:CDS | 35.0% |
| ! | ACAAAACAAAGTAGTGGAGA+AGG | - | Chr5:55716721-55716740 | None:intergenic | 35.0% |
| ! | ACATTGGAAGAAGATGGATT+AGG | + | Chr5:55717880-55717899 | MsG0580027183.01.T01:CDS | 35.0% |
| ! | GACTTAATACTATTGGTTGG+AGG | - | Chr5:55718704-55718723 | None:intergenic | 35.0% |
| !! | CAGATAAGACTCTAAGACTT+AGG | - | Chr5:55717082-55717101 | None:intergenic | 35.0% |
| ACACACTATCTCACACATCT+AGG | + | Chr5:55718512-55718531 | MsG0580027183.01.T01:intron | 40.0% | |
| ACGAGCAAAGAGAAAGGATT+TGG | + | Chr5:55718075-55718094 | MsG0580027183.01.T01:intron | 40.0% | |
| AGATATGAGTGGTGAGGAAA+TGG | + | Chr5:55718179-55718198 | MsG0580027183.01.T01:CDS | 40.0% | |
| AGTCCACAAGATGTATGGAA+AGG | + | Chr5:55718720-55718739 | MsG0580027183.01.T01:CDS | 40.0% | |
| ATGCAGAACAATTTCAGCAG+AGG | - | Chr5:55717017-55717036 | None:intergenic | 40.0% | |
| CCAGAAGCAACTTATGCAAT+AGG | + | Chr5:55717985-55718004 | MsG0580027183.01.T01:intron | 40.0% | |
| CCTATTGCATAAGTTGCTTC+TGG | - | Chr5:55717988-55718007 | None:intergenic | 40.0% | |
| CCTTTCTCTTTGCTCGTATT+CGG | - | Chr5:55718072-55718091 | None:intergenic | 40.0% | |
| GAACAATTTCAGCAGAGGTT+TGG | - | Chr5:55717012-55717031 | None:intergenic | 40.0% | |
| GAGGATAGTGAAGATATGAG+TGG | + | Chr5:55718168-55718187 | MsG0580027183.01.T01:CDS | 40.0% | |
| GGAGTGAAGACATAGAGATT+TGG | + | Chr5:55716948-55716967 | MsG0580027183.01.T01:intron | 40.0% | |
| GTGGACACAAAACAAAGTAG+TGG | - | Chr5:55716727-55716746 | None:intergenic | 40.0% | |
| TAATCAGAATCTGAACGCAG+CGG | - | Chr5:55717429-55717448 | None:intergenic | 40.0% | |
| TAATCAGGACAATGAAGCAG+AGG | + | Chr5:55718149-55718168 | MsG0580027183.01.T01:intron | 40.0% | |
| TAATCGTCATCCTCAACGAT+AGG | + | Chr5:55718284-55718303 | MsG0580027183.01.T01:intron | 40.0% | |
| TAGTGAAGATATGAGTGGTG+AGG | + | Chr5:55718173-55718192 | MsG0580027183.01.T01:CDS | 40.0% | |
| TCGATCAGTGTAAAACTTCG+AGG | - | Chr5:55718255-55718274 | None:intergenic | 40.0% | |
| TCTTTCCCTCTTCAAATGAC+AGG | + | Chr5:55717931-55717950 | MsG0580027183.01.T01:CDS | 40.0% | |
| TGAGAAAAACACAAGAAGGG+GGG | - | Chr5:55717535-55717554 | None:intergenic | 40.0% | |
| TGGGAAAGATTTGAAGGCTT+TGG | + | Chr5:55716642-55716661 | MsG0580027183.01.T01:CDS | 40.0% | |
| TGTAAAGTGTGCTTGAGCAA+AGG | + | Chr5:55717248-55717267 | MsG0580027183.01.T01:intron | 40.0% | |
| TTCTCCTAAACTGAACACAC+TGG | - | Chr5:55717484-55717503 | None:intergenic | 40.0% | |
| ! | AAACAAAGTAGTGGAGAAGG+TGG | - | Chr5:55716718-55716737 | None:intergenic | 40.0% |
| ! | ATGGAACCTGTCATTTGAAG+AGG | - | Chr5:55717940-55717959 | None:intergenic | 40.0% |
| ! | GAAGTTTTACACTGATCGAC+AGG | + | Chr5:55718256-55718275 | MsG0580027183.01.T01:CDS | 40.0% |
| ! | TGGAACCTGTCATTTGAAGA+GGG | - | Chr5:55717939-55717958 | None:intergenic | 40.0% |
| ! | TGTTTTCTTGTCTTGTAGCG+TGG | - | Chr5:55716746-55716765 | None:intergenic | 40.0% |
| !! | AACCTTGCAACGGTCATTTT+GGG | + | Chr5:55716623-55716642 | MsG0580027183.01.T01:CDS | 40.0% |
| !! | TCGCTCTTTTAACTGCTTGT+AGG | - | Chr5:55718208-55718227 | None:intergenic | 40.0% |
| AAGTGGGATTGGACTACTTC+CGG | + | Chr5:55717341-55717360 | MsG0580027183.01.T01:intron | 45.0% | |
| AGACTAGTGGAACCTTGCAA+CGG | + | Chr5:55716613-55716632 | MsG0580027183.01.T01:CDS | 45.0% | |
| ATTGGACTACTTCCGGATTG+TGG | + | Chr5:55717348-55717367 | MsG0580027183.01.T01:intron | 45.0% | |
| CCACAAGATGTATGGAAAGG+AGG | + | Chr5:55718723-55718742 | MsG0580027183.01.T01:CDS | 45.0% | |
| CCGAATACGAGCAAAGAGAA+AGG | + | Chr5:55718069-55718088 | MsG0580027183.01.T01:intron | 45.0% | |
| CCTCCTTTCCATACATCTTG+TGG | - | Chr5:55718726-55718745 | None:intergenic | 45.0% | |
| CTGACCAGTGTGTTCAGTTT+AGG | + | Chr5:55717477-55717496 | MsG0580027183.01.T01:intron | 45.0% | |
| CTTTCAATTCCTGATGAGCC+TGG | - | Chr5:55718639-55718658 | None:intergenic | 45.0% | |
| GAAACATACCTGTTCAGTCC+AGG | + | Chr5:55718618-55718637 | MsG0580027183.01.T01:CDS | 45.0% | |
| TAGCCAACCGCCTATTGAAT+CGG | + | Chr5:55718029-55718048 | MsG0580027183.01.T01:intron | 45.0% | |
| TTCCCAAAATGACCGTTGCA+AGG | - | Chr5:55716628-55716647 | None:intergenic | 45.0% | |
| TTCTCTTTGCTCGTATTCGG+AGG | - | Chr5:55718069-55718088 | None:intergenic | 45.0% | |
| ! | AATCTCCTTGGAAGTGCAAG+TGG | + | Chr5:55717324-55717343 | MsG0580027183.01.T01:intron | 45.0% |
| ! | ATCTCCTTGGAAGTGCAAGT+GGG | + | Chr5:55717325-55717344 | MsG0580027183.01.T01:intron | 45.0% |
| ! | CAACGACTCTTTTGATGTGC+TGG | + | Chr5:55716889-55716908 | MsG0580027183.01.T01:intron | 45.0% |
| ! | GAACCTTGCAACGGTCATTT+TGG | + | Chr5:55716622-55716641 | MsG0580027183.01.T01:CDS | 45.0% |
| !! | TACTGGTTCCTTCCACAATC+CGG | - | Chr5:55717363-55717382 | None:intergenic | 45.0% |
| ACTCCGATTCAATAGGCGGT+TGG | - | Chr5:55718035-55718054 | None:intergenic | 50.0% | |
| CAATCCCACTTGCACTTCCA+AGG | - | Chr5:55717332-55717351 | None:intergenic | 50.0% | |
| GACTACTTCCGGATTGTGGA+AGG | + | Chr5:55717352-55717371 | MsG0580027183.01.T01:intron | 50.0% | |
| TTGCAGGCGTAGCTGTATTC+TGG | - | Chr5:55716772-55716791 | None:intergenic | 50.0% | |
| ! | CTTGGAAGTGCAAGTGGGAT+TGG | + | Chr5:55717330-55717349 | MsG0580027183.01.T01:intron | 50.0% |
| CTGATGAGCCTGGACTGAAC+AGG | - | Chr5:55718629-55718648 | None:intergenic | 55.0% | |
| CTGTTCAGTCCAGGCTCATC+AGG | + | Chr5:55718627-55718646 | MsG0580027183.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 55716606 | 55718773 | 55716606 | ID=MsG0580027183.01;Name=MsG0580027183.01 |
| Chr5 | mRNA | 55716606 | 55718773 | 55716606 | ID=MsG0580027183.01.T01;Parent=MsG0580027183.01;Name=MsG0580027183.01.T01;_AED=0.49;_eAED=0.57;_QI=0|0|0|1|1|1|4|0|185 |
| Chr5 | exon | 55716606 | 55716692 | 55716606 | ID=MsG0580027183.01.T01:exon:41688;Parent=MsG0580027183.01.T01 |
| Chr5 | exon | 55717826 | 55717975 | 55717826 | ID=MsG0580027183.01.T01:exon:41689;Parent=MsG0580027183.01.T01 |
| Chr5 | exon | 55718156 | 55718278 | 55718156 | ID=MsG0580027183.01.T01:exon:41690;Parent=MsG0580027183.01.T01 |
| Chr5 | exon | 55718576 | 55718773 | 55718576 | ID=MsG0580027183.01.T01:exon:41691;Parent=MsG0580027183.01.T01 |
| Chr5 | CDS | 55716606 | 55716692 | 55716606 | ID=MsG0580027183.01.T01:cds;Parent=MsG0580027183.01.T01 |
| Chr5 | CDS | 55717826 | 55717975 | 55717826 | ID=MsG0580027183.01.T01:cds;Parent=MsG0580027183.01.T01 |
| Chr5 | CDS | 55718156 | 55718278 | 55718156 | ID=MsG0580027183.01.T01:cds;Parent=MsG0580027183.01.T01 |
| Chr5 | CDS | 55718576 | 55718773 | 55718576 | ID=MsG0580027183.01.T01:cds;Parent=MsG0580027183.01.T01 |
| Gene Sequence |
| Protein sequence |
