AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007852.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007852.01.T01 MTR_2g034140 95.089 224 11 0 52 275 187 410 7.83e-139 397
MsG0280007852.01.T01 MTR_2g034140 90.566 53 5 0 3 55 70 122 3.17e-25 103
MsG0280007852.01.T01 MTR_2g034140 95.089 224 11 0 52 275 201 424 7.98e-139 398
MsG0280007852.01.T01 MTR_2g034140 90.566 53 5 0 3 55 84 136 2.96e-25 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTGAGCATCTCTTAT+TGG 0.255116 2:-21867070 MsG0280007852.01.T01:CDS
AATATTACCTTGCACTTGTA+TGG 0.266728 2:+21868572 None:intergenic
GCAGGCTTTCTTCAACTTGC+TGG 0.275625 2:-21867561 MsG0280007852.01.T01:intron
AGCATCTCTTATTGGCTCTA+AGG 0.283609 2:-21867062 MsG0280007852.01.T01:CDS
AACCAAGCAAATTCAAGAAT+TGG 0.303130 2:-21869392 MsG0280007852.01.T01:five_prime_UTR
ACATCTTATGCTGCCTTAGA+AGG 0.333220 2:-21869278 MsG0280007852.01.T01:CDS
GAAGAACTATGGCGTGCTTT+AGG 0.333345 2:-21868373 MsG0280007852.01.T01:CDS
AAGTTGAAGTTTCTAAGATT+TGG 0.338252 2:+21868135 None:intergenic
CGTCCCATGAGTGGAGATAT+TGG 0.340408 2:-21867986 MsG0280007852.01.T01:CDS
ATCTTAGAAACTTCAACTTA+TGG 0.342098 2:-21868131 MsG0280007852.01.T01:CDS
ATTGTTGAATCTCCAACATT+AGG 0.343139 2:+21868192 None:intergenic
ATAGATTATTGACATTTAAC+AGG 0.344744 2:+21867018 None:intergenic
GTGAAGATCTTTATCATGAT+TGG 0.346513 2:+21869236 None:intergenic
TATGCTGCCTTAGAAGGCCT+TGG 0.350897 2:-21869272 MsG0280007852.01.T01:CDS
TCATAACCCAAGGCCTTCTA+AGG 0.373122 2:+21869265 None:intergenic
TCTAAGGGAAGCACTTGCTT+TGG 0.385951 2:-21867046 MsG0280007852.01.T01:CDS
GGCATACATGTTCAGATTGT+TGG 0.392739 2:-21867147 MsG0280007852.01.T01:intron
ATCCAATTCTTGAATTTGCT+TGG 0.404030 2:+21869390 None:intergenic
ATGCTGCCTTAGAAGGCCTT+GGG 0.406090 2:-21869271 MsG0280007852.01.T01:CDS
GTAGACTGTTTGAAGAACTA+TGG 0.410606 2:-21868384 MsG0280007852.01.T01:CDS
TGAAGCAGCTCCACCATGTT+GGG 0.410865 2:+21867101 None:intergenic
TTGTTTGTTTCCAGAATACT+TGG 0.412856 2:-21867377 MsG0280007852.01.T01:intron
GAGGAACACGAGTAGATTGT+AGG 0.423694 2:+21866787 None:intergenic
ATTTATGCTTTATCTAAACT+TGG 0.425417 2:+21866696 None:intergenic
AATTCAAGAATTGGATTATG+TGG 0.441744 2:-21869383 MsG0280007852.01.T01:exon
CAGGTTAGTTTACCTAATGT+TGG 0.448264 2:-21868204 MsG0280007852.01.T01:CDS
CTTGATTGAAACTTTGATGT+TGG 0.455698 2:-21866980 MsG0280007852.01.T01:three_prime_UTR
GTCCCATGAGTGGAGATATT+GGG 0.462790 2:-21867985 MsG0280007852.01.T01:CDS
GGCTTTCTTCAACTTGCTGG+TGG 0.463509 2:-21867558 MsG0280007852.01.T01:CDS
CCATCACAAGCTTTAATTAG+CGG 0.477742 2:-21867322 MsG0280007852.01.T01:CDS
AGGGAAGCACTTGCTTTGGT+TGG 0.480501 2:-21867042 MsG0280007852.01.T01:CDS
TTAATTAGCGGCATAGCCTA+TGG 0.486305 2:-21867310 MsG0280007852.01.T01:CDS
AGAGCCAATAAGAGATGCTC+AGG 0.491628 2:+21867066 None:intergenic
ACTAATGCTCACACAATTGA+AGG 0.491760 2:-21867534 MsG0280007852.01.T01:CDS
TATTGGGAGAGGAGCAACTA+AGG 0.521422 2:-21867969 MsG0280007852.01.T01:CDS
TAGAAACTTCAACTTATGGC+AGG 0.529444 2:-21868127 MsG0280007852.01.T01:intron
CCGCTAATTAAAGCTTGTGA+TGG 0.532669 2:+21867322 None:intergenic
TCTCCCAATATCTCCACTCA+TGG 0.532854 2:+21867982 None:intergenic
AATAGCCTTTGCTGTTCAGT+TGG 0.533122 2:-21867942 MsG0280007852.01.T01:CDS
AAAGCAAAAGATAGACCTCC+TGG 0.545248 2:-21867917 MsG0280007852.01.T01:intron
GCATCTCTTATTGGCTCTAA+GGG 0.555107 2:-21867061 MsG0280007852.01.T01:CDS
TTGAAGCAGCTCCACCATGT+TGG 0.555464 2:+21867100 None:intergenic
CTTTCGCGCGTAGCCACCAT+AGG 0.556649 2:+21867294 None:intergenic
TCCACCATGTTGGGATTGCA+TGG 0.562511 2:+21867110 None:intergenic
GTTGTGAGTGCTGTGAATGA+AGG 0.582088 2:-21869318 MsG0280007852.01.T01:CDS
ATGAGTGGAGATATTGGGAG+AGG 0.585956 2:-21867980 MsG0280007852.01.T01:CDS
TTAGACGGCCGTCCCATGAG+TGG 0.597393 2:-21867995 MsG0280007852.01.T01:CDS
CTATGGTGGCTACGCGCGAA+AGG 0.602405 2:-21867293 MsG0280007852.01.T01:intron
CTCCCAATATCTCCACTCAT+GGG 0.614980 2:+21867983 None:intergenic
TAGAAATCCATACAAGTGCA+AGG 0.617877 2:-21868579 MsG0280007852.01.T01:intron
CTGTATAAACTCAAGTTAGA+CGG 0.620531 2:-21868010 MsG0280007852.01.T01:intron
TTTAGCCAACTGAACAGCAA+AGG 0.629790 2:+21867937 None:intergenic
AGATCCATGCAATCCCAACA+TGG 0.647702 2:-21867114 MsG0280007852.01.T01:CDS
CAATATCTCCACTCATGGGA+CGG 0.650068 2:+21867987 None:intergenic
ATTAGCGGCATAGCCTATGG+TGG 0.654448 2:-21867307 MsG0280007852.01.T01:CDS
TTGGCACTGATCATAACCCA+AGG 0.695152 2:+21869255 None:intergenic
TCCATGCAATCCCAACATGG+TGG 0.701127 2:-21867111 MsG0280007852.01.T01:CDS
TGTGAATGAAGGAATTGAAG+TGG 0.703438 2:-21869307 MsG0280007852.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGATTATTGACATTTAAC+AGG + Chr2:21869108-21869127 None:intergenic 20.0%
!! ATTTACTATTAAAATGATCC+AGG - Chr2:21867900-21867919 MsG0280007852.01.T01:intron 20.0%
!! TAAAACTTGTGATGTTTAAT+TGG - Chr2:21867277-21867296 MsG0280007852.01.T01:intron 20.0%
!! TAAATATTAAAAGAGGTTGA+AGG + Chr2:21867817-21867836 None:intergenic 20.0%
!!! AACCTCTTTTAATATTTAAG+GGG - Chr2:21867819-21867838 MsG0280007852.01.T01:intron 20.0%
!!! CAACCTCTTTTAATATTTAA+GGG - Chr2:21867818-21867837 MsG0280007852.01.T01:intron 20.0%
!!! TCAACCTCTTTTAATATTTA+AGG - Chr2:21867817-21867836 MsG0280007852.01.T01:intron 20.0%
!!! TCAATTTGTTAAAAGAAACA+TGG + Chr2:21868085-21868104 None:intergenic 20.0%
!!! TGAACAACAATTTTGAATTT+TGG + Chr2:21869243-21869262 None:intergenic 20.0%
! AAAGTTTAATCTATGCTTAC+CGG - Chr2:21867010-21867029 MsG0280007852.01.T01:exon 25.0%
! AACCCCTTAAATATTAAAAG+AGG + Chr2:21867824-21867843 None:intergenic 25.0%
! AAGAAACATGGAATAGAATT+TGG + Chr2:21868073-21868092 None:intergenic 25.0%
! AATTCAAGAATTGGATTATG+TGG - Chr2:21866740-21866759 MsG0280007852.01.T01:three_prime_UTR 25.0%
! ACGTTACACAAAACTAATTA+AGG + Chr2:21867432-21867451 None:intergenic 25.0%
! ATCTTAGAAACTTCAACTTA+TGG - Chr2:21867992-21868011 MsG0280007852.01.T01:CDS 25.0%
! ATTGAAGGATTGAAAAAAGA+AGG - Chr2:21868604-21868623 MsG0280007852.01.T01:CDS 25.0%
! CGTTACACAAAACTAATTAA+GGG + Chr2:21867431-21867450 None:intergenic 25.0%
! GACATGATATGAATCTAAAA+TGG - Chr2:21868440-21868459 MsG0280007852.01.T01:intron 25.0%
! TTCCATAAATACTTGTTTCA+AGG - Chr2:21867856-21867875 MsG0280007852.01.T01:intron 25.0%
!! AATTTAGAACAGAAACAGAA+TGG + Chr2:21868893-21868912 None:intergenic 25.0%
!! ACACCAATTTTACATTTTAG+AGG + Chr2:21869358-21869377 None:intergenic 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG + Chr2:21867991-21868010 None:intergenic 25.0%
!!! ACGATATTTTCTAGTTTCAT+CGG - Chr2:21867385-21867404 MsG0280007852.01.T01:intron 25.0%
!!! ATCGTACTTATTTTATCGTA+GGG + Chr2:21867370-21867389 None:intergenic 25.0%
!!! GGAAAAGATTTTAATGAGAT+AGG - Chr2:21868353-21868372 MsG0280007852.01.T01:CDS 25.0%
!!! GTTCCTCTAAAATGTAAAAT+TGG - Chr2:21869352-21869371 MsG0280007852.01.T01:CDS 25.0%
!!! TATCGTACTTATTTTATCGT+AGG + Chr2:21867371-21867390 None:intergenic 25.0%
!!! TTTCTGTTCTAAATTTTCTG+TGG - Chr2:21868898-21868917 MsG0280007852.01.T01:intron 25.0%
AACCAAGCAAATTCAAGAAT+TGG - Chr2:21866731-21866750 MsG0280007852.01.T01:three_prime_UTR 30.0%
AATATTACCTTGCACTTGTA+TGG + Chr2:21867554-21867573 None:intergenic 30.0%
AATGTTTCATTCCCTTAACA+TGG - Chr2:21868540-21868559 MsG0280007852.01.T01:intron 30.0%
AGCCTTGAAACAAGTATTTA+TGG + Chr2:21867861-21867880 None:intergenic 30.0%
AGGATCAAATTCTGTTAAGA+AGG + Chr2:21867061-21867080 None:intergenic 30.0%
ATTGTTGAATCTCCAACATT+AGG + Chr2:21867934-21867953 None:intergenic 30.0%
CAGTTATATCCTAGTATTTC+GGG + Chr2:21867583-21867602 None:intergenic 30.0%
CTGTATAAACTCAAGTTAGA+CGG - Chr2:21868113-21868132 MsG0280007852.01.T01:intron 30.0%
CTTGATTGAAACTTTGATGT+TGG - Chr2:21869143-21869162 MsG0280007852.01.T01:intron 30.0%
CTTTAGTACTCTTGGTATTT+CGG + Chr2:21867184-21867203 None:intergenic 30.0%
GCAGTTATATCCTAGTATTT+CGG + Chr2:21867584-21867603 None:intergenic 30.0%
GTCAAGTTATCATATCATGA+TGG - Chr2:21868397-21868416 MsG0280007852.01.T01:intron 30.0%
GTCTAACTTGAGTTTATACA+GGG + Chr2:21868114-21868133 None:intergenic 30.0%
GTGAAGATCTTTATCATGAT+TGG + Chr2:21866890-21866909 None:intergenic 30.0%
GTTAAAACCTTTAGTACTCT+TGG + Chr2:21867192-21867211 None:intergenic 30.0%
GTTGAATAAGAACTGTCTTA+CGG + Chr2:21866924-21866943 None:intergenic 30.0%
TAACAACATTGAGTGATTTC+CGG + Chr2:21867032-21867051 None:intergenic 30.0%
TTGAATAAGAACTGTCTTAC+GGG + Chr2:21866923-21866942 None:intergenic 30.0%
TTGTTTGTTTCCAGAATACT+TGG - Chr2:21868746-21868765 MsG0280007852.01.T01:intron 30.0%
TTTAATTGGATTGAACATGC+AGG - Chr2:21867291-21867310 MsG0280007852.01.T01:intron 30.0%
TTTGTGAAGTAGATTTCTCT+TGG + Chr2:21867149-21867168 None:intergenic 30.0%
! ATCCAATTCTTGAATTTGCT+TGG + Chr2:21866736-21866755 None:intergenic 30.0%
! TTTTCATGATCCAAGTATTC+TGG + Chr2:21868759-21868778 None:intergenic 30.0%
!! AAGATTTTAATGAGATAGGC+AGG - Chr2:21868357-21868376 MsG0280007852.01.T01:CDS 30.0%
!! CAATTTTGAATTTTGGTGCA+TGG + Chr2:21869236-21869255 None:intergenic 30.0%
!! TGTACTTTTCATTTTGATCC+AGG - Chr2:21867453-21867472 MsG0280007852.01.T01:intron 30.0%
!!! TCGTACTTATTTTATCGTAG+GGG + Chr2:21867369-21867388 None:intergenic 30.0%
ACTAATGCTCACACAATTGA+AGG - Chr2:21868589-21868608 MsG0280007852.01.T01:CDS 35.0%
ATTAGTGTTCCCGAAATACT+AGG - Chr2:21867571-21867590 MsG0280007852.01.T01:intron 35.0%
CAACATTAGGTAAACTAACC+TGG + Chr2:21867921-21867940 None:intergenic 35.0%
CGTCTAACTTGAGTTTATAC+AGG + Chr2:21868115-21868134 None:intergenic 35.0%
CTTAACAGAATTTGATCCTG+AGG - Chr2:21867062-21867081 MsG0280007852.01.T01:CDS 35.0%
GATAGGATATGGACATGATA+AGG - Chr2:21868302-21868321 MsG0280007852.01.T01:intron 35.0%
GTAGACTGTTTGAAGAACTA+TGG - Chr2:21867739-21867758 MsG0280007852.01.T01:intron 35.0%
GTCACATTATGTGATGACAT+TGG - Chr2:21868955-21868974 MsG0280007852.01.T01:intron 35.0%
TAGAAACTTCAACTTATGGC+AGG - Chr2:21867996-21868015 MsG0280007852.01.T01:CDS 35.0%
TAGAAATCCATACAAGTGCA+AGG - Chr2:21867544-21867563 MsG0280007852.01.T01:CDS 35.0%
TGTGAATGAAGGAATTGAAG+TGG - Chr2:21866816-21866835 MsG0280007852.01.T01:three_prime_UTR 35.0%
! ATAAGGTCTTATCCTCATGT+TGG - Chr2:21868319-21868338 MsG0280007852.01.T01:intron 35.0%
! CCATCACAAGCTTTAATTAG+CGG - Chr2:21868801-21868820 MsG0280007852.01.T01:intron 35.0%
! TTTGATGGTCATGATAGAGA+CGG - Chr2:21868280-21868299 MsG0280007852.01.T01:intron 35.0%
!! CAGGTTAGTTTACCTAATGT+TGG - Chr2:21867919-21867938 MsG0280007852.01.T01:CDS 35.0%
!! CGAAATACCAAGAGTACTAA+AGG - Chr2:21867182-21867201 MsG0280007852.01.T01:intron 35.0%
!! TTTTCATTTTGATCCAGGAG+AGG - Chr2:21867458-21867477 MsG0280007852.01.T01:intron 35.0%
AAAGCAAAAGATAGACCTCC+TGG - Chr2:21868206-21868225 MsG0280007852.01.T01:intron 40.0%
AAATGTGAATACGAACCAGG+AGG + Chr2:21868224-21868243 None:intergenic 40.0%
AAGAAAGCCTGCCATGTTAA+GGG + Chr2:21868554-21868573 None:intergenic 40.0%
ACATCTTATGCTGCCTTAGA+AGG - Chr2:21866845-21866864 MsG0280007852.01.T01:three_prime_UTR 40.0%
ATGATGCGTATAAACCCTGA+AGG + Chr2:21868511-21868530 None:intergenic 40.0%
ATTGGATTGAACATGCAGGA+CGG - Chr2:21867295-21867314 MsG0280007852.01.T01:CDS 40.0%
CCGCTAATTAAAGCTTGTGA+TGG + Chr2:21868804-21868823 None:intergenic 40.0%
CTCTATCATGACCATCAAAC+AGG + Chr2:21868279-21868298 None:intergenic 40.0%
CTTACATATGTTACCTCTCC+TGG + Chr2:21867474-21867493 None:intergenic 40.0%
GCAGGATATTATATGCGACA+TGG - Chr2:21868375-21868394 MsG0280007852.01.T01:CDS 40.0%
GGAATGAGATTGCATTAGCA+GGG + Chr2:21867128-21867147 None:intergenic 40.0%
GGCATACATGTTCAGATTGT+TGG - Chr2:21868976-21868995 MsG0280007852.01.T01:intron 40.0%
TCATCCTGAGCATCTCTTAT+TGG - Chr2:21869053-21869072 MsG0280007852.01.T01:intron 40.0%
TGATAGAGACGGATAGGATA+TGG - Chr2:21868291-21868310 MsG0280007852.01.T01:intron 40.0%
TGGAAATGTGAATACGAACC+AGG + Chr2:21868227-21868246 None:intergenic 40.0%
TGGAATGAGATTGCATTAGC+AGG + Chr2:21867129-21867148 None:intergenic 40.0%
TTAATTAGCGGCATAGCCTA+TGG - Chr2:21868813-21868832 MsG0280007852.01.T01:intron 40.0%
TTTAGCCAACTGAACAGCAA+AGG + Chr2:21868189-21868208 None:intergenic 40.0%
TTTCATTCCCTTAACATGGC+AGG - Chr2:21868544-21868563 MsG0280007852.01.T01:intron 40.0%
! ATTTTATCGTAGGGGCAAAC+TGG + Chr2:21867361-21867380 None:intergenic 40.0%
! CAGGGCAAACATTTTCACAA+GGG + Chr2:21867110-21867129 None:intergenic 40.0%
! GATGTATCGACACAAGGAAA+TGG + Chr2:21867705-21867724 None:intergenic 40.0%
! GGTTTTCAAAGGACTGTTGA+TGG + Chr2:21868247-21868266 None:intergenic 40.0%
! GTGTCGATACATCCTTCTAT+AGG - Chr2:21867712-21867731 MsG0280007852.01.T01:intron 40.0%
! TAGAAGGATGTATCGACACA+AGG + Chr2:21867711-21867730 None:intergenic 40.0%
!! AATAGCCTTTGCTGTTCAGT+TGG - Chr2:21868181-21868200 MsG0280007852.01.T01:CDS 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG - Chr2:21869061-21869080 MsG0280007852.01.T01:intron 40.0%
!! CCTCATGTTGGTTTCTTACT+CGG - Chr2:21868331-21868350 MsG0280007852.01.T01:intron 40.0%
!! CTCATGTTGGTTTCTTACTC+GGG - Chr2:21868332-21868351 MsG0280007852.01.T01:intron 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG - Chr2:21869062-21869081 MsG0280007852.01.T01:intron 40.0%
!! GGTCTTGTGAAGGTTTTCAA+AGG + Chr2:21868258-21868277 None:intergenic 40.0%
ACTTCAACTTATGGCAGGTG+TGG - Chr2:21868001-21868020 MsG0280007852.01.T01:intron 45.0%
AGAGCCAATAAGAGATGCTC+AGG + Chr2:21869060-21869079 None:intergenic 45.0%
AGATCCATGCAATCCCAACA+TGG - Chr2:21869009-21869028 MsG0280007852.01.T01:intron 45.0%
ATGAGTGGAGATATTGGGAG+AGG - Chr2:21868143-21868162 MsG0280007852.01.T01:CDS 45.0%
CAATATCTCCACTCATGGGA+CGG + Chr2:21868139-21868158 None:intergenic 45.0%
CAGTCTACTCTGCCTATAGA+AGG + Chr2:21867727-21867746 None:intergenic 45.0%
CATGCAGGACGGAGTTATAA+CGG - Chr2:21867306-21867325 MsG0280007852.01.T01:CDS 45.0%
CCGAGTAAGAAACCAACATG+AGG + Chr2:21868334-21868353 None:intergenic 45.0%
CCTTCACAAGACCTGTTTGA+TGG - Chr2:21868265-21868284 MsG0280007852.01.T01:intron 45.0%
CTCCCAATATCTCCACTCAT+GGG + Chr2:21868143-21868162 None:intergenic 45.0%
GAAGAAAGCCTGCCATGTTA+AGG + Chr2:21868555-21868574 None:intergenic 45.0%
GAAGAACTATGGCGTGCTTT+AGG - Chr2:21867750-21867769 MsG0280007852.01.T01:intron 45.0%
GAGGAACACGAGTAGATTGT+AGG + Chr2:21869339-21869358 None:intergenic 45.0%
GTATGCTGACGTGTGATGTA+TGG + Chr2:21866956-21866975 None:intergenic 45.0%
GTCAGGATAAGAGACACGAT+AGG + Chr2:21868477-21868496 None:intergenic 45.0%
GTCCCATGAGTGGAGATATT+GGG - Chr2:21868138-21868157 MsG0280007852.01.T01:CDS 45.0%
TATTGGGAGAGGAGCAACTA+AGG - Chr2:21868154-21868173 MsG0280007852.01.T01:CDS 45.0%
TCATAACCCAAGGCCTTCTA+AGG + Chr2:21866861-21866880 None:intergenic 45.0%
TCTCCCAATATCTCCACTCA+TGG + Chr2:21868144-21868163 None:intergenic 45.0%
TGGTCATGATAGAGACGGAT+AGG - Chr2:21868285-21868304 MsG0280007852.01.T01:intron 45.0%
TTGAAGCTAGTAGCCGTAAG+TGG - Chr2:21867789-21867808 MsG0280007852.01.T01:intron 45.0%
! CCATCAAACAGGTCTTGTGA+AGG + Chr2:21868268-21868287 None:intergenic 45.0%
! GCAGGGCAAACATTTTCACA+AGG + Chr2:21867111-21867130 None:intergenic 45.0%
! GTTGTGAGTGCTGTGAATGA+AGG - Chr2:21866805-21866824 MsG0280007852.01.T01:three_prime_UTR 45.0%
!! TCTAAGGGAAGCACTTGCTT+TGG - Chr2:21869077-21869096 MsG0280007852.01.T01:intron 45.0%
!! TTGGCACTGATCATAACCCA+AGG + Chr2:21866871-21866890 None:intergenic 45.0%
ATGCTGCCTTAGAAGGCCTT+GGG - Chr2:21866852-21866871 MsG0280007852.01.T01:three_prime_UTR 50.0%
ATTAGCGGCATAGCCTATGG+TGG - Chr2:21868816-21868835 MsG0280007852.01.T01:intron 50.0%
CGTCCCATGAGTGGAGATAT+TGG - Chr2:21868137-21868156 MsG0280007852.01.T01:CDS 50.0%
GCAGGCTTTCTTCAACTTGC+TGG - Chr2:21868562-21868581 MsG0280007852.01.T01:intron 50.0%
TATGCTGCCTTAGAAGGCCT+TGG - Chr2:21866851-21866870 MsG0280007852.01.T01:three_prime_UTR 50.0%
TCCACCATGTTGGGATTGCA+TGG + Chr2:21869016-21869035 None:intergenic 50.0%
TCCATGCAATCCCAACATGG+TGG - Chr2:21869012-21869031 MsG0280007852.01.T01:intron 50.0%
TCTTATCCTGACCATCGAGC+AGG - Chr2:21868485-21868504 MsG0280007852.01.T01:intron 50.0%
TGAAGCAGCTCCACCATGTT+GGG + Chr2:21869025-21869044 None:intergenic 50.0%
TGATCCTGAGGACTGTCCAT+CGG - Chr2:21867074-21867093 MsG0280007852.01.T01:CDS 50.0%
TTGAAGCAGCTCCACCATGT+TGG + Chr2:21869026-21869045 None:intergenic 50.0%
!! AGGGAAGCACTTGCTTTGGT+TGG - Chr2:21869081-21869100 MsG0280007852.01.T01:intron 50.0%
!! GAGGTTGAAGGCACCACTTA+CGG + Chr2:21867805-21867824 None:intergenic 50.0%
!! GGCTTTCTTCAACTTGCTGG+TGG - Chr2:21868565-21868584 MsG0280007852.01.T01:intron 50.0%
!! GTTATAACGGAGCGCTGCTA+TGG - Chr2:21867319-21867338 MsG0280007852.01.T01:CDS 50.0%
AACCCTGAAGGCCTGCTCGA+TGG + Chr2:21868499-21868518 None:intergenic 60.0%
CAGTCCGATGGACAGTCCTC+AGG + Chr2:21867081-21867100 None:intergenic 60.0%
CTATGGTGGCTACGCGCGAA+AGG - Chr2:21868830-21868849 MsG0280007852.01.T01:intron 60.0%
CTTTCGCGCGTAGCCACCAT+AGG + Chr2:21868832-21868851 None:intergenic 60.0%
GACCATCGAGCAGGCCTTCA+GGG - Chr2:21868494-21868513 MsG0280007852.01.T01:intron 60.0%
TGAAGGCCTGCTCGATGGTC+AGG + Chr2:21868494-21868513 None:intergenic 60.0%
TGACCATCGAGCAGGCCTTC+AGG - Chr2:21868493-21868512 MsG0280007852.01.T01:intron 60.0%
TTAGACGGCCGTCCCATGAG+TGG - Chr2:21868128-21868147 MsG0280007852.01.T01:CDS 60.0%
! CAAGGGCGTGAACAGTCCGA+TGG + Chr2:21867093-21867112 None:intergenic 60.0%
!! ACGGAGCGCTGCTATGGCTG+TGG - Chr2:21867325-21867344 MsG0280007852.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 21866699 21869446 21866699 ID=MsG0280007852.01;Name=MsG0280007852.01
Chr2 mRNA 21866699 21869446 21866699 ID=MsG0280007852.01.T01;Parent=MsG0280007852.01;Name=MsG0280007852.01.T01;_AED=0.47;_eAED=0.47;_QI=58|0.87|1|1|0.87|0.77|9|289|276
Chr2 exon 21866699 21866760 21866699 ID=MsG0280007852.01.T01:exon:40196;Parent=MsG0280007852.01.T01
Chr2 exon 21866796 21867154 21866796 ID=MsG0280007852.01.T01:exon:40195;Parent=MsG0280007852.01.T01
Chr2 exon 21867294 21867385 21867294 ID=MsG0280007852.01.T01:exon:40194;Parent=MsG0280007852.01.T01
Chr2 exon 21867496 21867579 21867496 ID=MsG0280007852.01.T01:exon:40193;Parent=MsG0280007852.01.T01
Chr2 exon 21867918 21868017 21867918 ID=MsG0280007852.01.T01:exon:40192;Parent=MsG0280007852.01.T01
Chr2 exon 21868128 21868223 21868128 ID=MsG0280007852.01.T01:exon:40191;Parent=MsG0280007852.01.T01
Chr2 exon 21868342 21868411 21868342 ID=MsG0280007852.01.T01:exon:40190;Parent=MsG0280007852.01.T01
Chr2 exon 21868580 21868670 21868580 ID=MsG0280007852.01.T01:exon:40189;Parent=MsG0280007852.01.T01
Chr2 exon 21869223 21869446 21869223 ID=MsG0280007852.01.T01:exon:40188;Parent=MsG0280007852.01.T01
Chr2 five_prime_UTR 21869389 21869446 21869389 ID=MsG0280007852.01.T01:five_prime_utr;Parent=MsG0280007852.01.T01
Chr2 CDS 21869223 21869388 21869223 ID=MsG0280007852.01.T01:cds;Parent=MsG0280007852.01.T01
Chr2 CDS 21868580 21868670 21868580 ID=MsG0280007852.01.T01:cds;Parent=MsG0280007852.01.T01
Chr2 CDS 21868342 21868411 21868342 ID=MsG0280007852.01.T01:cds;Parent=MsG0280007852.01.T01
Chr2 CDS 21868128 21868223 21868128 ID=MsG0280007852.01.T01:cds;Parent=MsG0280007852.01.T01
Chr2 CDS 21867918 21868017 21867918 ID=MsG0280007852.01.T01:cds;Parent=MsG0280007852.01.T01
Chr2 CDS 21867496 21867579 21867496 ID=MsG0280007852.01.T01:cds;Parent=MsG0280007852.01.T01
Chr2 CDS 21867294 21867385 21867294 ID=MsG0280007852.01.T01:cds;Parent=MsG0280007852.01.T01
Chr2 CDS 21867023 21867154 21867023 ID=MsG0280007852.01.T01:cds;Parent=MsG0280007852.01.T01
Chr2 three_prime_UTR 21866796 21867022 21866796 ID=MsG0280007852.01.T01:three_prime_utr;Parent=MsG0280007852.01.T01
Chr2 three_prime_UTR 21866699 21866760 21866699 ID=MsG0280007852.01.T01:three_prime_utr;Parent=MsG0280007852.01.T01
Gene Sequence

>MsG0280007852.01.T01

ATGTGGTTGATTGCAGTTGACTGCATTGACTGTGCTGCTGATGCATCTGTTGTGAGTGCTGTGAATGAAGGAATTGAAGTGGCAAGAGACATCTTATGCTGCCTTAGAAGGCCTTGGGTTATGATCAGTGCCAATCATGATAAAGATCTTCACTTTCGCAAAGCCCGAGAGGTAACATATGTAAGAGATGCTGTTACAACTTCTGATCTCATCAAGAGAAACGATGTTGATGCTATAGAAATCCATACAAGTGCAAGGCAGAGTAGACTGTTTGAAGAACTATGGCGTGCTTTAGGAGATTCAGTAGAAAATTTGAAGCTAGTAGCCGTTAGTTTACCTAATGTTGGAGATTCAACAATATCTTCTATGAACAAAATGTTCTCTATTATGAAACCAAATCTTAGAAACTTCAACTTATGGCAGTTAGACGGCCGTCCCATGAGTGGAGATATTGGGAGAGGAGCAACTAAGGCGTCAATAGCCTTTGCTGTTCAGTTGGCTAAAGCAAAAGATAGACCTCCTGGCTTTCTTCAACTTGCTGGTGGAACTAATGCTCACACAATTGAAGGATTGAAAAAAGAAGGACTCTTTCAAACAACTAGTTTAAAATACTTGGATCATGAAAATTCAACAATCAGTACATCTAATCCATCACAAGCTTTAATTAGCGGCATAGCCTATGGTGGCTACGCGCGAAAGATTGTTGGTAGAGTATTGAGATCCATGCAATCCCAACATGGTGGAGCTGCTTCAATTGAAGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCACTTGCTTTGGTTGGACCTGTTAAATGTCAATAA

Protein sequence

>MsG0280007852.01.T01

MWLIAVDCIDCAADASVVSAVNEGIEVARDILCCLRRPWVMISANHDKDLHFRKAREVTYVRDAVTTSDLIKRNDVDAIEIHTSARQSRLFEELWRALGDSVENLKLVAVSLPNVGDSTISSMNKMFSIMKPNLRNFNLWQLDGRPMSGDIGRGATKASIAFAVQLAKAKDRPPGFLQLAGGTNAHTIEGLKKEGLFQTTSLKYLDHENSTISTSNPSQALISGIAYGGYARKIVGRVLRSMQSQHGGAASIEDHPEHLLLALREALALVGPVKCQ*