AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005961.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005961.01.T01 MTR_1g110750 80.263 304 13 1 1 304 1 257 2.32e-168 467
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005961.01.T01 AT3G25920 58.803 284 58 3 17 290 24 258 3.99e-102 300

Find 94 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATTGGTTTCTTCTTT+AGG 0.207614 1:+98147523 MsG0180005961.01.T01:three_prime_UTR
TCGGTTTCGGTTGGACAATT+TGG 0.209684 1:+98142646 MsG0180005961.01.T01:CDS
CAAGGAGCGAGTTGTGGTTT+TGG 0.247810 1:+98142728 MsG0180005961.01.T01:CDS
ATCAATCATCATCAACAAAT+TGG 0.250968 1:+98147510 MsG0180005961.01.T01:three_prime_UTR
CGCTCTTCCCTCTGTCAAAA+TGG 0.254189 1:-98142189 None:intergenic
TCCTGCAATTCCTCTAAGTT+TGG 0.258498 1:-98142834 None:intergenic
CTTCTCTTATTCCTGTTTCC+TGG 0.269459 1:+98142249 MsG0180005961.01.T01:CDS
CGGTTTCGGTTGGACAATTT+GGG 0.284648 1:+98142647 MsG0180005961.01.T01:CDS
CTGTGTTGGATCAACAAGTT+TGG 0.290494 1:+98144894 MsG0180005961.01.T01:CDS
AGCAGCTGCTTCTCGCTTCT+TGG 0.291577 1:-98147440 None:intergenic
TTGCATATTTAAACAGAATC+TGG 0.313222 1:-98147469 None:intergenic
CGACGATTGCCCAAACTTAG+AGG 0.316218 1:+98142824 MsG0180005961.01.T01:CDS
AGATTGATGTGGACATATTT+CGG 0.336463 1:-98143867 None:intergenic
CTCCTTTGCTGATGTGGAAA+AGG 0.349946 1:-98147314 None:intergenic
CTCTTTCTTGAACCTGGTTG+TGG 0.358662 1:-98142671 None:intergenic
CTCTCTCGCTTCTCCATTCA+AGG 0.359377 1:+98142277 MsG0180005961.01.T01:CDS
TTAAGACATGGACATAGATA+TGG 0.367880 1:-98142545 None:intergenic
GAGAAAACTTCAATACAAAA+AGG 0.369347 1:-98147586 None:intergenic
TGTTCCATCACTGTGATTCC+TGG 0.369456 1:+98147355 MsG0180005961.01.T01:CDS
CCCAAACTTAGAGGAATTGC+AGG 0.376415 1:+98142833 MsG0180005961.01.T01:CDS
TGATTCCTGGCCGTAAGAAA+TGG 0.380224 1:+98147368 MsG0180005961.01.T01:CDS
CCTGCAATTCCTCTAAGTTT+GGG 0.397805 1:-98142833 None:intergenic
CAAGGCTCCATCAAGGAGTT+GGG 0.407704 1:+98144775 MsG0180005961.01.T01:intron
TTTGCTCTCTTTCTTGAACC+TGG 0.419614 1:-98142677 None:intergenic
GTGAGGAAGTAATTTCAGTT+GGG 0.425278 1:+98144861 MsG0180005961.01.T01:CDS
AAGTTTCTCCTTTGCTGATG+TGG 0.426566 1:-98147320 None:intergenic
TAATAAGGCTGCTTCTGCTT+CGG 0.436199 1:+98142601 MsG0180005961.01.T01:CDS
TGTGGCGGGAATAAGAATAA+AGG 0.441124 1:+98144817 MsG0180005961.01.T01:CDS
AAGAAAGAGAGCAAAGAGAA+AGG 0.443452 1:+98142685 MsG0180005961.01.T01:CDS
TGTGTTGGATCAACAAGTTT+GGG 0.443597 1:+98144895 MsG0180005961.01.T01:CDS
AGAGAGGGTAACCAGGAAAC+AGG 0.445145 1:-98142260 None:intergenic
CTCTGTCAAAATGGAACAAA+CGG 0.445922 1:-98142180 None:intergenic
ATGGCTTAACCCATTTCTTA+CGG 0.452810 1:-98147378 None:intergenic
AACCAGCAGGTGAAAATGTT+CGG 0.456863 1:+98142627 MsG0180005961.01.T01:CDS
CGATTTGTGCTGGAAACCTT+TGG 0.460118 1:+98147713 MsG0180005961.01.T01:three_prime_UTR
TAAAATGGAAGTACCTTGAA+TGG 0.460890 1:-98142290 None:intergenic
AGAAGGGGAAGAGGTGTCTC+TGG 0.461261 1:+98143917 MsG0180005961.01.T01:CDS
TCAAGGCTCCATCAAGGAGT+TGG 0.465680 1:+98144774 MsG0180005961.01.T01:intron
CAGGTGAAAATGTTCGGTTT+CGG 0.473561 1:+98142633 MsG0180005961.01.T01:CDS
GTTTGCTTGTCGATTTGTGC+TGG 0.476311 1:+98147703 MsG0180005961.01.T01:three_prime_UTR
GACAATTTGGGTCCACAACC+AGG 0.479320 1:+98142659 MsG0180005961.01.T01:CDS
AGAAAGAGAGCAAAGAGAAA+GGG 0.484644 1:+98142686 MsG0180005961.01.T01:CDS
TGAAAATGTTCGGTTTCGGT+TGG 0.487169 1:+98142637 MsG0180005961.01.T01:CDS
AGAAGCGAGAGAGGGTAACC+AGG 0.489358 1:-98142267 None:intergenic
TTAACCCATTTCTTACGGCC+AGG 0.492636 1:-98147373 None:intergenic
GAAATATGTCCACATCAATC+TGG 0.495258 1:+98143869 MsG0180005961.01.T01:CDS
GGAACGGAAACTTCTATTGA+AGG 0.496485 1:+98143980 MsG0180005961.01.T01:CDS
AGTTTCCGTTCCCTTCCTGA+TGG 0.497026 1:-98143969 None:intergenic
ACTTAATAAGGTATGCATGC+TGG 0.498536 1:+98143840 MsG0180005961.01.T01:intron
ATCATTGAAGATTATGTGGC+GGG 0.503515 1:+98144803 MsG0180005961.01.T01:CDS
TCTGCTTCGGTGAAACCAGC+AGG 0.507750 1:+98142614 MsG0180005961.01.T01:CDS
AGAGCAAAGAGAAAGGGAAG+AGG 0.509714 1:+98142692 MsG0180005961.01.T01:CDS
GATTCCTGGCCGTAAGAAAT+GGG 0.511756 1:+98147369 MsG0180005961.01.T01:CDS
GGTGAGGAAGTAATTTCAGT+TGG 0.519421 1:+98144860 MsG0180005961.01.T01:CDS
GAAGATGCTGGATTTCAAGA+AGG 0.525528 1:+98143900 MsG0180005961.01.T01:CDS
AAGGAGAAACTTGAGTCTGC+TGG 0.526406 1:+98147331 MsG0180005961.01.T01:CDS
CTGGTAGACATAGAAGATGC+TGG 0.527862 1:+98143888 MsG0180005961.01.T01:CDS
AAACGTGTGATTAACCCATC+AGG 0.531753 1:+98143954 MsG0180005961.01.T01:CDS
AAAGGCACACATGGATGTCA+TGG 0.532756 1:+98144835 MsG0180005961.01.T01:CDS
AAGATGCTGGATTTCAAGAA+GGG 0.537870 1:+98143901 MsG0180005961.01.T01:CDS
GTTTCCGTTCCCTTCCTGAT+GGG 0.539207 1:-98143968 None:intergenic
AGAGGTATTGCCGCAGGACA+AGG 0.557884 1:+98142710 MsG0180005961.01.T01:CDS
ATTAAACACACTACTACCAA+AGG 0.559616 1:-98147729 None:intergenic
TTGGGCAATCGTCGATAAAG+TGG 0.564517 1:-98142815 None:intergenic
GCAGGGAAACGTGAAAACCT+TGG 0.567301 1:+98142514 MsG0180005961.01.T01:intron
AAGAAGTTGACAATAAAAGC+TGG 0.573815 1:+98147289 MsG0180005961.01.T01:CDS
GCAGGACAAGGAGCGAGTTG+TGG 0.577933 1:+98142722 MsG0180005961.01.T01:CDS
GTATATCATTGAAGATTATG+TGG 0.578735 1:+98144799 MsG0180005961.01.T01:CDS
TGGATTTCAAGAAGGGGAAG+AGG 0.578835 1:+98143908 MsG0180005961.01.T01:CDS
AAGGCTCCATCAAGGAGTTG+GGG 0.581539 1:+98144776 MsG0180005961.01.T01:intron
AAGGGAAGAGGTATTGCCGC+AGG 0.588347 1:+98142704 MsG0180005961.01.T01:CDS
TGGGGAAGATGCATCTGTGT+TGG 0.588917 1:+98144880 MsG0180005961.01.T01:CDS
CTTGAATGGAGAAGCGAGAG+AGG 0.590843 1:-98142276 None:intergenic
TGAGGAAGTAATTTCAGTTG+GGG 0.595007 1:+98144862 MsG0180005961.01.T01:CDS
GGTGTCTCTGGAGACACTGA+CGG 0.598433 1:+98143929 MsG0180005961.01.T01:CDS
TTGGTATCAAGGCTCCATCA+AGG 0.605869 1:+98144768 MsG0180005961.01.T01:intron
GTGTGATTAACCCATCAGGA+AGG 0.611754 1:+98143958 MsG0180005961.01.T01:CDS
TTGAATGGAGAAGCGAGAGA+GGG 0.622388 1:-98142275 None:intergenic
CTTCTTGGCGAAGTATTCGT+CGG 0.627986 1:-98147425 None:intergenic
ACGGCCAGGAATCACAGTGA+TGG 0.630385 1:-98147359 None:intergenic
TGTGATTAACCCATCAGGAA+GGG 0.634878 1:+98143959 MsG0180005961.01.T01:CDS
TCTGGACCTGGTATCATGAG+AGG 0.634957 1:+98142773 MsG0180005961.01.T01:CDS
AATAAGAATAAAGGCACACA+TGG 0.637108 1:+98144826 MsG0180005961.01.T01:CDS
TATCATTGAAGATTATGTGG+CGG 0.640005 1:+98144802 MsG0180005961.01.T01:CDS
TCAAAACCTCTCATGATACC+AGG 0.646172 1:-98142779 None:intergenic
CTATGTCTACCAGATTGATG+TGG 0.650882 1:-98143878 None:intergenic
GTTGGATCAACAAGTTTGGG+AGG 0.658417 1:+98144898 MsG0180005961.01.T01:CDS
TTAACCCATCAGGAAGGGAA+CGG 0.658603 1:+98143964 MsG0180005961.01.T01:CDS
AGATGCTGGATTTCAAGAAG+GGG 0.662527 1:+98143902 MsG0180005961.01.T01:CDS
CATGGATGTCATGGATGGTG+AGG 0.675988 1:+98144844 MsG0180005961.01.T01:CDS
GCACACATGGATGTCATGGA+TGG 0.678312 1:+98144839 MsG0180005961.01.T01:CDS
AGGCTCCATCAAGGAGTTGG+GGG 0.683689 1:+98144777 MsG0180005961.01.T01:intron
ACAACTCGCTCCTTGTCCTG+CGG 0.686055 1:-98142720 None:intergenic
AAACTTAGAGGAATTGCAGG+AGG 0.696930 1:+98142836 MsG0180005961.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATATTTTATAATA+AGG + Chr1:98147748-98147767 MsG0180005961.01.T01:three_prime_UTR 0.0%
!! TTTAATTAAATGTACATTTA+GGG - Chr1:98144731-98144750 None:intergenic 10.0%
!!! ATACACAAATATTTTTAAAA+AGG + Chr1:98147204-98147223 MsG0180005961.01.T01:intron 10.0%
!!! TTTTAATTAAATGTACATTT+AGG - Chr1:98144732-98144751 None:intergenic 10.0%
!! AATTTCAACAATAAAACAAT+AGG - Chr1:98142893-98142912 None:intergenic 15.0%
!! ACTAAAAAAATTAAATTCGA+AGG - Chr1:98142362-98142381 None:intergenic 15.0%
!! GAATTATATTAGGATAATTT+AGG + Chr1:98143278-98143297 MsG0180005961.01.T01:intron 15.0%
!!! AAAAGCAATTATTTTATGAA+AGG + Chr1:98143707-98143726 MsG0180005961.01.T01:intron 15.0%
!!! GAAAATAATGTTTTTAACTA+TGG + Chr1:98142930-98142949 MsG0180005961.01.T01:intron 15.0%
!!! GATTATTTTAGATTAACTAT+AGG - Chr1:98144524-98144543 None:intergenic 15.0%
!!! TATTAATCTTTTTCACTTTA+AGG + Chr1:98146109-98146128 MsG0180005961.01.T01:intron 15.0%
!!! TCTAATATCATTTAGAATTT+TGG + Chr1:98146574-98146593 MsG0180005961.01.T01:intron 15.0%
!!! TTTTTTTCAAGATATTTTGA+TGG - Chr1:98147668-98147687 None:intergenic 15.0%
!! AAAGAGTTAAAGTTAGTTAA+TGG + Chr1:98144381-98144400 MsG0180005961.01.T01:intron 20.0%
!! AAATAGAAATATCTTGAATG+AGG - Chr1:98142439-98142458 None:intergenic 20.0%
!! AAATATCAATTTCTGTCTAT+TGG + Chr1:98144749-98144768 MsG0180005961.01.T01:intron 20.0%
!! AACAAAACATCGTAAAAAAA+GGG - Chr1:98143206-98143225 None:intergenic 20.0%
!! ACCAGATAGAATATTTAAAA+GGG + Chr1:98145168-98145187 MsG0180005961.01.T01:intron 20.0%
!! GAGAATTCAAGAATATAAAA+TGG + Chr1:98145315-98145334 MsG0180005961.01.T01:intron 20.0%
!! TAACAAAACATCGTAAAAAA+AGG - Chr1:98143207-98143226 None:intergenic 20.0%
!! TACCAGATAGAATATTTAAA+AGG + Chr1:98145167-98145186 MsG0180005961.01.T01:intron 20.0%
!! TTTCATATTATGCCTTTAAT+CGG + Chr1:98144224-98144243 MsG0180005961.01.T01:intron 20.0%
!!! AATAATGTTTTTAACTATGG+CGG + Chr1:98142933-98142952 MsG0180005961.01.T01:intron 20.0%
!!! ATTTCTAAAGTGATATTTAG+CGG + Chr1:98146846-98146865 MsG0180005961.01.T01:intron 20.0%
!!! CTTTGAAAATCAACATATTA+GGG - Chr1:98143496-98143515 None:intergenic 20.0%
!!! GGATTTTGTTGAATTATATT+AGG + Chr1:98143268-98143287 MsG0180005961.01.T01:intron 20.0%
!!! TATTTTCAACAAGAGAAATA+AGG + Chr1:98144560-98144579 MsG0180005961.01.T01:intron 20.0%
!!! TCTTTGAAAATCAACATATT+AGG - Chr1:98143497-98143516 None:intergenic 20.0%
!!! TTCACTTTTAAAAACAAATG+AGG + Chr1:98144110-98144129 MsG0180005961.01.T01:intron 20.0%
! AAAAGGAAAAGATGTCTTTA+TGG + Chr1:98145495-98145514 MsG0180005961.01.T01:intron 25.0%
! AAAGGAAAAGATGTCTTTAT+GGG + Chr1:98145496-98145515 MsG0180005961.01.T01:intron 25.0%
! AACAAAATCATTGTTGAATG+CGG + Chr1:98145533-98145552 MsG0180005961.01.T01:intron 25.0%
! AATAAAAAAGATTACCGAAC+AGG + Chr1:98145420-98145439 MsG0180005961.01.T01:intron 25.0%
! AGAAGTCTTTCTTGATATAT+GGG - Chr1:98144156-98144175 None:intergenic 25.0%
! ATAAAAAAGATTACCGAACA+GGG + Chr1:98145421-98145440 MsG0180005961.01.T01:intron 25.0%
! ATCAATCATCATCAACAAAT+TGG + Chr1:98147510-98147529 MsG0180005961.01.T01:three_prime_UTR 25.0%
! ATTCATATGAAATAGGTGTT+GGG + Chr1:98144922-98144941 MsG0180005961.01.T01:intron 25.0%
! CATTTCAAGATGTCAATAAA+GGG - Chr1:98143534-98143553 None:intergenic 25.0%
! CTCTTGTTGAAAATATGTTT+AGG - Chr1:98144555-98144574 None:intergenic 25.0%
! GAGAAAACTTCAATACAAAA+AGG - Chr1:98147589-98147608 None:intergenic 25.0%
! GAGAGAAAATGAAGTTAAAA+TGG - Chr1:98142308-98142327 None:intergenic 25.0%
! GTATATCATTGAAGATTATG+TGG + Chr1:98144799-98144818 MsG0180005961.01.T01:CDS 25.0%
! GTTGTCTATAAATAAGAAGA+GGG + Chr1:98144586-98144605 MsG0180005961.01.T01:intron 25.0%
! TAGTCTATATACTACCAAAT+GGG + Chr1:98143069-98143088 MsG0180005961.01.T01:intron 25.0%
! TATTCATATGAAATAGGTGT+TGG + Chr1:98144921-98144940 MsG0180005961.01.T01:intron 25.0%
! TCATTAGTAGGAAAAAACAA+TGG + Chr1:98143345-98143364 MsG0180005961.01.T01:intron 25.0%
! TGATGTGTCATAATGTTATT+AGG + Chr1:98145027-98145046 MsG0180005961.01.T01:intron 25.0%
! TGTCAGATTCTAAACATATT+TGG - Chr1:98145706-98145725 None:intergenic 25.0%
! TGTTGTCTATAAATAAGAAG+AGG + Chr1:98144585-98144604 MsG0180005961.01.T01:intron 25.0%
! TTAGTCTATATACTACCAAA+TGG + Chr1:98143068-98143087 MsG0180005961.01.T01:intron 25.0%
! TTATTAACAACAAAAACACG+AGG - Chr1:98142587-98142606 None:intergenic 25.0%
! TTATTGTCTAAAGAGAATCA+TGG + Chr1:98143558-98143577 MsG0180005961.01.T01:intron 25.0%
! TTGCATATTTAAACAGAATC+TGG - Chr1:98147472-98147491 None:intergenic 25.0%
!! AAAGTTAGTTAATGGATGTT+GGG + Chr1:98144389-98144408 MsG0180005961.01.T01:intron 25.0%
!! AACAAATTGGTTTCTTCTTT+AGG + Chr1:98147523-98147542 MsG0180005961.01.T01:three_prime_UTR 25.0%
!! AATATTTTCCTGAGTTTATG+AGG - Chr1:98147051-98147070 None:intergenic 25.0%
!! ACAATGATTTTGTTCTTCAT+TGG - Chr1:98145527-98145546 None:intergenic 25.0%
!! ACCCTTTTAAATATTCTATC+TGG - Chr1:98145172-98145191 None:intergenic 25.0%
!! TAAAGTTAGTTAATGGATGT+TGG + Chr1:98144388-98144407 MsG0180005961.01.T01:intron 25.0%
!! TAAGTTCAAACGCAATATTT+TGG + Chr1:98144296-98144315 MsG0180005961.01.T01:intron 25.0%
!! TGAATTTGAAACTGTAAAGT+TGG + Chr1:98144336-98144355 MsG0180005961.01.T01:intron 25.0%
!! TTAAAAGGGTTTTTCTTGAA+AGG + Chr1:98145182-98145201 MsG0180005961.01.T01:intron 25.0%
!! TTCGTAGATATGAAAAGTAT+TGG - Chr1:98146814-98146833 None:intergenic 25.0%
!! TTTTGTATTGAAGTTTTCTC+TGG + Chr1:98147589-98147608 MsG0180005961.01.T01:three_prime_UTR 25.0%
!!! AATTCTATTTCTAAGTTGGT+TGG - Chr1:98146328-98146347 None:intergenic 25.0%
!!! CTTTTAAAAACAAATGAGGA+TGG + Chr1:98144114-98144133 MsG0180005961.01.T01:intron 25.0%
!!! TCGTGTTTTTGTTGTTAATA+AGG + Chr1:98142586-98142605 MsG0180005961.01.T01:CDS 25.0%
!!! TCTTGTCATTTTAGTATAGT+CGG + Chr1:98144632-98144651 MsG0180005961.01.T01:intron 25.0%
!!! TCTTTTTCACTTTAAGGATA+AGG + Chr1:98146115-98146134 MsG0180005961.01.T01:intron 25.0%
!!! TTGCTTTTGAAATGAAATCA+TGG - Chr1:98143695-98143714 None:intergenic 25.0%
!!! TTTTGAAATGAAATCATGGA+AGG - Chr1:98143691-98143710 None:intergenic 25.0%
AAATGGAGAAGTAAGAAGAA+AGG + Chr1:98145332-98145351 MsG0180005961.01.T01:intron 30.0%
AACATGTAAGACAACAACTA+AGG - Chr1:98144046-98144065 None:intergenic 30.0%
AACCAAAATTCTCCGATTAA+AGG - Chr1:98144239-98144258 None:intergenic 30.0%
AACTACTACATCAAGCTAAA+AGG + Chr1:98146029-98146048 MsG0180005961.01.T01:intron 30.0%
AACTTTATTCACGATAGACA+AGG - Chr1:98144190-98144209 None:intergenic 30.0%
AAGAAGAAAGGTGAAAGAAA+TGG + Chr1:98145344-98145363 MsG0180005961.01.T01:intron 30.0%
AAGAAGTTGACAATAAAAGC+TGG + Chr1:98147289-98147308 MsG0180005961.01.T01:CDS 30.0%
AAGACTTCCTTTATAAGAAG+AGG + Chr1:98145890-98145909 MsG0180005961.01.T01:intron 30.0%
ACATGTAAGACAACAACTAA+GGG - Chr1:98144045-98144064 None:intergenic 30.0%
ACCATTGTATTTGTATTTGC+AGG + Chr1:98142496-98142515 MsG0180005961.01.T01:intron 30.0%
ACTACTACATCAAGCTAAAA+GGG + Chr1:98146030-98146049 MsG0180005961.01.T01:intron 30.0%
ACTTCTAATTAGTCATGCAT+TGG + Chr1:98147132-98147151 MsG0180005961.01.T01:intron 30.0%
ACTTTAACTCTTTCAACCAA+CGG - Chr1:98144374-98144393 None:intergenic 30.0%
ACTTTATTCACGATAGACAA+GGG - Chr1:98144189-98144208 None:intergenic 30.0%
AGAAGAGCTCTTTCAAATAA+TGG - Chr1:98147023-98147042 None:intergenic 30.0%
AGATTGATGTGGACATATTT+CGG - Chr1:98143870-98143889 None:intergenic 30.0%
AGGAAGAGAAATTTAGGTAT+TGG - Chr1:98143606-98143625 None:intergenic 30.0%
AGGTGAAATTGTGATAGATA+AGG - Chr1:98142342-98142361 None:intergenic 30.0%
ATACCCAACAAAATACCAAA+TGG - Chr1:98145080-98145099 None:intergenic 30.0%
ATCTTGAATGAGGTGAAAAT+GGG - Chr1:98142429-98142448 None:intergenic 30.0%
ATGACTTTCAAATGTGATGT+AGG - Chr1:98143430-98143449 None:intergenic 30.0%
ATTAAACACACTACTACCAA+AGG - Chr1:98147732-98147751 None:intergenic 30.0%
ATTATTTGAAAGAGCTCTTC+TGG + Chr1:98147022-98147041 MsG0180005961.01.T01:intron 30.0%
ATTTCTGTCTATTGGTATCA+AGG + Chr1:98144757-98144776 MsG0180005961.01.T01:intron 30.0%
CAAACATGCATAAACTTCTA+GGG + Chr1:98146477-98146496 MsG0180005961.01.T01:intron 30.0%
CAGAGTTTCACAATTTGTAA+TGG - Chr1:98145598-98145617 None:intergenic 30.0%
CCATTGTATTTGTATTTGCA+GGG + Chr1:98142497-98142516 MsG0180005961.01.T01:intron 30.0%
CCATTTCAAACAACTTATAC+AGG + Chr1:98147088-98147107 MsG0180005961.01.T01:intron 30.0%
CCATTTCAAGATGTCAATAA+AGG - Chr1:98143535-98143554 None:intergenic 30.0%
CCTGTATAAGTTGTTTGAAA+TGG - Chr1:98147091-98147110 None:intergenic 30.0%
CCTTTATTGACATCTTGAAA+TGG + Chr1:98143532-98143551 MsG0180005961.01.T01:intron 30.0%
CGTGAGAAAATGAAATGAAA+TGG - Chr1:98142462-98142481 None:intergenic 30.0%
CTGTAAAGTTGGAATATAAG+AGG + Chr1:98144347-98144366 MsG0180005961.01.T01:intron 30.0%
CTTCTAATTAGTCATGCATT+GGG + Chr1:98147133-98147152 MsG0180005961.01.T01:intron 30.0%
GAAGGATATAGAAGAATAAG+GGG - Chr1:98143673-98143692 None:intergenic 30.0%
GAAGTCTTTCTTGATATATG+GGG - Chr1:98144155-98144174 None:intergenic 30.0%
GAGAAGTCTTTCTTGATATA+TGG - Chr1:98144157-98144176 None:intergenic 30.0%
GGAAGGATATAGAAGAATAA+GGG - Chr1:98143674-98143693 None:intergenic 30.0%
GTATCTACCTCTTCTTATAA+AGG - Chr1:98145900-98145919 None:intergenic 30.0%
TAAAAAAGATTACCGAACAG+GGG + Chr1:98145422-98145441 MsG0180005961.01.T01:intron 30.0%
TAAAGAGAATCATGGCATTA+TGG + Chr1:98143566-98143585 MsG0180005961.01.T01:intron 30.0%
TACCCAACAAAATACCAAAT+GGG - Chr1:98145079-98145098 None:intergenic 30.0%
TATATATAAGAAGAGGCTGA+AGG + Chr1:98146243-98146262 MsG0180005961.01.T01:intron 30.0%
TATCATTGAAGATTATGTGG+CGG + Chr1:98144802-98144821 MsG0180005961.01.T01:CDS 30.0%
TATCTTGAATGAGGTGAAAA+TGG - Chr1:98142430-98142449 None:intergenic 30.0%
TCAAACATGCATAAACTTCT+AGG + Chr1:98146476-98146495 MsG0180005961.01.T01:intron 30.0%
TGCTCTACATGAATAATACT+TGG - Chr1:98145932-98145951 None:intergenic 30.0%
TGCTGTCTATATATAAGAAG+AGG + Chr1:98146236-98146255 MsG0180005961.01.T01:intron 30.0%
TGGAAGGATATAGAAGAATA+AGG - Chr1:98143675-98143694 None:intergenic 30.0%
TGTTGGATTGTATTTCAAAG+AGG + Chr1:98145822-98145841 MsG0180005961.01.T01:intron 30.0%
TTAAGACATGGACATAGATA+TGG - Chr1:98142548-98142567 None:intergenic 30.0%
TTAGGGAAAATTTCCTTGTA+TGG - Chr1:98144714-98144733 None:intergenic 30.0%
TTGACAGTGTAATTCAATGA+TGG + Chr1:98142966-98142985 MsG0180005961.01.T01:intron 30.0%
TTTCTTTCATTCTTTGTCGT+AGG + Chr1:98143732-98143751 MsG0180005961.01.T01:intron 30.0%
TTTCTTTGAGCCTTACAAAA+CGG - Chr1:98144460-98144479 None:intergenic 30.0%
! AACCCATTTGGTATTTTGTT+GGG + Chr1:98145074-98145093 MsG0180005961.01.T01:intron 30.0%
! AATAAGAATAAAGGCACACA+TGG + Chr1:98144826-98144845 MsG0180005961.01.T01:CDS 30.0%
! AATATAATTTGCCCGCTAAT+AGG + Chr1:98143177-98143196 MsG0180005961.01.T01:intron 30.0%
! AATTTAGGATCCTACTGTTA+GGG + Chr1:98143293-98143312 MsG0180005961.01.T01:intron 30.0%
! TAACCCATTTGGTATTTTGT+TGG + Chr1:98145073-98145092 MsG0180005961.01.T01:intron 30.0%
! TAATTTAGGATCCTACTGTT+AGG + Chr1:98143292-98143311 MsG0180005961.01.T01:intron 30.0%
! TCTAGCATCATGAATTTTGT+TGG + Chr1:98146912-98146931 MsG0180005961.01.T01:intron 30.0%
! TTTTCCTTCACAAAGCTTAT+AGG - Chr1:98146410-98146429 None:intergenic 30.0%
!! AAATTTAGGTATTGGAAGCT+TGG - Chr1:98143598-98143617 None:intergenic 30.0%
!! AATAATAGTTTGTTGTGCTC+TGG + Chr1:98147236-98147255 MsG0180005961.01.T01:intron 30.0%
!! ACACATTACTTGTTGGTTTA+TGG + Chr1:98144004-98144023 MsG0180005961.01.T01:intron 30.0%
!! GAGCAATTCTATTTCTAAGT+TGG - Chr1:98146332-98146351 None:intergenic 30.0%
!! TAAAATGGAAGTACCTTGAA+TGG - Chr1:98142293-98142312 None:intergenic 30.0%
!! TAAACATGAAGATGGATTGT+TGG + Chr1:98145805-98145824 MsG0180005961.01.T01:intron 30.0%
!!! ATTCGCTGAATTTTAAGACA+TGG - Chr1:98142560-98142579 None:intergenic 30.0%
!!! CTTGTCATTTTAGTATAGTC+GGG + Chr1:98144633-98144652 MsG0180005961.01.T01:intron 30.0%
!!! CTTGTTATTTTGATAGAGCT+GGG + Chr1:98146274-98146293 MsG0180005961.01.T01:intron 30.0%
!!! TCTTGTTATTTTGATAGAGC+TGG + Chr1:98146273-98146292 MsG0180005961.01.T01:intron 30.0%
!!! TTGTCATTTTAGTATAGTCG+GGG + Chr1:98144634-98144653 MsG0180005961.01.T01:intron 30.0%
AAAAAAGGGCAACCTATTAG+CGG - Chr1:98143192-98143211 None:intergenic 35.0%
AAAATCATTGTTGAATGCGG+AGG + Chr1:98145536-98145555 MsG0180005961.01.T01:intron 35.0%
AAACGAGTGAAGAAAAGAGT+CGG + Chr1:98145270-98145289 MsG0180005961.01.T01:intron 35.0%
AAAGAAACTGTAGCATGTTC+TGG + Chr1:98146872-98146891 MsG0180005961.01.T01:intron 35.0%
AAGAAAGAGAGCAAAGAGAA+AGG + Chr1:98142685-98142704 MsG0180005961.01.T01:CDS 35.0%
AAGATGCTGGATTTCAAGAA+GGG + Chr1:98143901-98143920 MsG0180005961.01.T01:CDS 35.0%
ACATATAATACGCTACCAAG+TGG + Chr1:98146964-98146983 MsG0180005961.01.T01:intron 35.0%
ACTATTGGAGGAGATGAATT+TGG + Chr1:98145237-98145256 MsG0180005961.01.T01:intron 35.0%
ACTTAATAAGGTATGCATGC+TGG + Chr1:98143840-98143859 MsG0180005961.01.T01:intron 35.0%
AGAAAGAGAGCAAAGAGAAA+GGG + Chr1:98142686-98142705 MsG0180005961.01.T01:CDS 35.0%
ATCAATTTGACATACAGGTC+AGG + Chr1:98145131-98145150 MsG0180005961.01.T01:intron 35.0%
ATCATTGAAGATTATGTGGC+GGG + Chr1:98144803-98144822 MsG0180005961.01.T01:CDS 35.0%
ATCTCTTCTTACACAACACT+TGG + Chr1:98142860-98142879 MsG0180005961.01.T01:intron 35.0%
ATGGCTTAACCCATTTCTTA+CGG - Chr1:98147381-98147400 None:intergenic 35.0%
ATTGATGAGAGGCAGATTAA+TGG + Chr1:98145865-98145884 MsG0180005961.01.T01:intron 35.0%
CAAGAAAGACTTCTCATATG+AGG + Chr1:98144162-98144181 MsG0180005961.01.T01:intron 35.0%
CAAGGATCAATTTGACATAC+AGG + Chr1:98145126-98145145 MsG0180005961.01.T01:intron 35.0%
CATATAATACGCTACCAAGT+GGG + Chr1:98146965-98146984 MsG0180005961.01.T01:intron 35.0%
CCCTGCAAATACAAATACAA+TGG - Chr1:98142500-98142519 None:intergenic 35.0%
CTAACAGAAGTGGAATGAAA+AGG + Chr1:98145478-98145497 MsG0180005961.01.T01:intron 35.0%
CTACTTGTAGCATCATTAGT+AGG + Chr1:98143333-98143352 MsG0180005961.01.T01:intron 35.0%
CTCTGTCAAAATGGAACAAA+CGG - Chr1:98142183-98142202 None:intergenic 35.0%
GAAATATGTCCACATCAATC+TGG + Chr1:98143869-98143888 MsG0180005961.01.T01:CDS 35.0%
GAAATGGAGTGAAATGACTA+TGG + Chr1:98145360-98145379 MsG0180005961.01.T01:intron 35.0%
GAACTGAGGAAGAGAAATTT+AGG - Chr1:98143612-98143631 None:intergenic 35.0%
GCATTCTTTACCTTACAAAC+TGG - Chr1:98146619-98146638 None:intergenic 35.0%
GGAAAACTACAGAACTTCAA+AGG - Chr1:98144693-98144712 None:intergenic 35.0%
GTATATGCATAAATCTCGCT+TGG + Chr1:98143774-98143793 MsG0180005961.01.T01:intron 35.0%
GTCAAGCATAATAAGAACTG+AGG - Chr1:98143626-98143645 None:intergenic 35.0%
GTGAAGGAAAATAACATGCT+CGG + Chr1:98146419-98146438 MsG0180005961.01.T01:intron 35.0%
GTGAGGAAGTAATTTCAGTT+GGG + Chr1:98144861-98144880 MsG0180005961.01.T01:CDS 35.0%
TACATAATCAATCTGCAACC+AGG - Chr1:98143394-98143413 None:intergenic 35.0%
TAGCATCATAATGCTTCACA+TGG + Chr1:98143236-98143255 MsG0180005961.01.T01:intron 35.0%
TCATGAAGTATGCCTATTAC+AGG + Chr1:98143446-98143465 MsG0180005961.01.T01:intron 35.0%
TCTCTTCTTACACAACACTT+GGG + Chr1:98142861-98142880 MsG0180005961.01.T01:intron 35.0%
TGAGGAAGTAATTTCAGTTG+GGG + Chr1:98144862-98144881 MsG0180005961.01.T01:CDS 35.0%
TGAGTTAAGCTTGTAGTTTG+TGG + Chr1:98146185-98146204 MsG0180005961.01.T01:intron 35.0%
TGCTTCACATGGAGTTTAAA+TGG + Chr1:98143247-98143266 MsG0180005961.01.T01:intron 35.0%
TGTGTTGGATCAACAAGTTT+GGG + Chr1:98144895-98144914 MsG0180005961.01.T01:CDS 35.0%
TTCATGTTTAGCAACAGCAT+AGG - Chr1:98145795-98145814 None:intergenic 35.0%
TTGATACACCTGTTAGTTGA+AGG + Chr1:98146158-98146177 MsG0180005961.01.T01:intron 35.0%
! AAAAGTGTGCTCTTGTACAA+AGG + Chr1:98145564-98145583 MsG0180005961.01.T01:intron 35.0%
! AAGGGTTTTTCTTGAAAGGA+CGG + Chr1:98145186-98145205 MsG0180005961.01.T01:intron 35.0%
! ATAATCGAGTCCGTTTTGTA+AGG + Chr1:98144447-98144466 MsG0180005961.01.T01:intron 35.0%
! ATCTGACAACTTCAACCTTT+TGG + Chr1:98145718-98145737 MsG0180005961.01.T01:intron 35.0%
! ATTGTTTTCACGATGTCTAG+AGG + Chr1:98144076-98144095 MsG0180005961.01.T01:intron 35.0%
! CTTTTCATTCCACTTCTGTT+AGG - Chr1:98145480-98145499 None:intergenic 35.0%
! GAGTTAAGCTTGTAGTTTGT+GGG + Chr1:98146186-98146205 MsG0180005961.01.T01:intron 35.0%
! GTTCTGTAGTTTTCCATACA+AGG + Chr1:98144698-98144717 MsG0180005961.01.T01:intron 35.0%
! TGAAGGTACACATTACTTGT+TGG + Chr1:98143997-98144016 MsG0180005961.01.T01:intron 35.0%
! TGCCTTTAATCGGAGAATTT+TGG + Chr1:98144234-98144253 MsG0180005961.01.T01:intron 35.0%
! TGTGAAGCATTATGATGCTA+CGG - Chr1:98143236-98143255 None:intergenic 35.0%
! TTCTTGATATATGGGGTACT+AGG - Chr1:98144148-98144167 None:intergenic 35.0%
!! ATTTCTAAGTTGGTTGGAAG+AGG - Chr1:98146322-98146341 None:intergenic 35.0%
!! GGGAGGTATTCATATGAAAT+AGG + Chr1:98144915-98144934 MsG0180005961.01.T01:intron 35.0%
!! GTTCAAACGCAATATTTTGG+TGG + Chr1:98144299-98144318 MsG0180005961.01.T01:intron 35.0%
!! GTTTGTTCCATTTTGACAGA+GGG + Chr1:98142182-98142201 MsG0180005961.01.T01:five_prime_UTR 35.0%
!! TAGATATGGTTTTGCTACCA+AGG - Chr1:98142534-98142553 None:intergenic 35.0%
!! TTTCTAAGTTGGTTGGAAGA+GGG - Chr1:98146321-98146340 None:intergenic 35.0%
!! TTTGTACAAGAGCACACTTT+TGG - Chr1:98145565-98145584 None:intergenic 35.0%
!!! TGTCATTTTAGTATAGTCGG+GGG + Chr1:98144635-98144654 MsG0180005961.01.T01:intron 35.0%
AAAAAGGGCAACCTATTAGC+GGG - Chr1:98143191-98143210 None:intergenic 40.0%
AAACGTGTGATTAACCCATC+AGG + Chr1:98143954-98143973 MsG0180005961.01.T01:CDS 40.0%
AAACTTAGAGGAATTGCAGG+AGG + Chr1:98142836-98142855 MsG0180005961.01.T01:CDS 40.0%
AAAGAGTTCTTTGGCATGAC+TGG + Chr1:98145984-98146003 MsG0180005961.01.T01:intron 40.0%
AAATGACTATGGCATGGAAG+TGG + Chr1:98145371-98145390 MsG0180005961.01.T01:intron 40.0%
AACCAGCAGGTGAAAATGTT+CGG + Chr1:98142627-98142646 MsG0180005961.01.T01:CDS 40.0%
AAGAATGCCCAAGCTCTATT+TGG + Chr1:98146631-98146650 MsG0180005961.01.T01:intron 40.0%
AAGAGGGCTTAGATTTGAGA+GGG + Chr1:98144602-98144621 MsG0180005961.01.T01:intron 40.0%
AAGAGTTCTTTGGCATGACT+GGG + Chr1:98145985-98146004 MsG0180005961.01.T01:intron 40.0%
AAGTTTCTCCTTTGCTGATG+TGG - Chr1:98147323-98147342 None:intergenic 40.0%
AGAATGCCCAAGCTCTATTT+GGG + Chr1:98146632-98146651 MsG0180005961.01.T01:intron 40.0%
AGAGCAACACAAAGTTTGAG+AGG + Chr1:98145946-98145965 MsG0180005961.01.T01:intron 40.0%
AGAGGTCAAAAATCTCGATC+TGG + Chr1:98142755-98142774 MsG0180005961.01.T01:CDS 40.0%
AGATGCTGGATTTCAAGAAG+GGG + Chr1:98143902-98143921 MsG0180005961.01.T01:CDS 40.0%
AGCTTGAAGATGAAGTTGTG+GGG + Chr1:98145749-98145768 MsG0180005961.01.T01:intron 40.0%
AGGATAAGGTGAAACTTGAG+AGG + Chr1:98146129-98146148 MsG0180005961.01.T01:intron 40.0%
AGTAGCCAAGGTGATATCAA+AGG + Chr1:98145669-98145688 MsG0180005961.01.T01:intron 40.0%
ATAAGTCATCTGTGTAGCCA+TGG + Chr1:98144957-98144976 MsG0180005961.01.T01:intron 40.0%
ATACGAGATTCGTTGTTCGA+TGG - Chr1:98145649-98145668 None:intergenic 40.0%
CAAAAAACCTTACCGGAAGA+TGG + Chr1:98146381-98146400 MsG0180005961.01.T01:intron 40.0%
CACACTCAGGACTGAATATT+TGG - Chr1:98146679-98146698 None:intergenic 40.0%
CAGGTGAAAATGTTCGGTTT+CGG + Chr1:98142633-98142652 MsG0180005961.01.T01:CDS 40.0%
CATTAGGTCTTCATGCATGT+AGG - Chr1:98145622-98145641 None:intergenic 40.0%
CCTGCAATTCCTCTAAGTTT+GGG - Chr1:98142836-98142855 None:intergenic 40.0%
CTATGTCTACCAGATTGATG+TGG - Chr1:98143881-98143900 None:intergenic 40.0%
CTCAAACTCCTTCAACTAAC+AGG - Chr1:98146169-98146188 None:intergenic 40.0%
CTGTGTTGGATCAACAAGTT+TGG + Chr1:98144894-98144913 MsG0180005961.01.T01:CDS 40.0%
CTTCTCTTATTCCTGTTTCC+TGG + Chr1:98142249-98142268 MsG0180005961.01.T01:CDS 40.0%
CTTTGCCTTTGATATCACCT+TGG - Chr1:98145677-98145696 None:intergenic 40.0%
GAAAATAACATGCTCGGCAA+CGG + Chr1:98146425-98146444 MsG0180005961.01.T01:intron 40.0%
GAAGATGCTGGATTTCAAGA+AGG + Chr1:98143900-98143919 MsG0180005961.01.T01:CDS 40.0%
GAGCTTGAAGATGAAGTTGT+GGG + Chr1:98145748-98145767 MsG0180005961.01.T01:intron 40.0%
GATTATGCGGTTGAGAAACA+CGG - Chr1:98144433-98144452 None:intergenic 40.0%
GCTGTTGCTAAACATGAAGA+TGG + Chr1:98145797-98145816 MsG0180005961.01.T01:intron 40.0%
GGAAAAGATGTCTTTATGGG+TGG + Chr1:98145499-98145518 MsG0180005961.01.T01:intron 40.0%
GGAACGGAAACTTCTATTGA+AGG + Chr1:98143980-98143999 MsG0180005961.01.T01:CDS 40.0%
GGTGAGGAAGTAATTTCAGT+TGG + Chr1:98144860-98144879 MsG0180005961.01.T01:CDS 40.0%
GTTTCGGCAAAAAACCTTAC+CGG + Chr1:98146374-98146393 MsG0180005961.01.T01:intron 40.0%
TAATAAGGCTGCTTCTGCTT+CGG + Chr1:98142601-98142620 MsG0180005961.01.T01:CDS 40.0%
TCAAAACCTCTCATGATACC+AGG - Chr1:98142782-98142801 None:intergenic 40.0%
TCCATGATTCGTAACCCATT+TGG + Chr1:98145062-98145081 MsG0180005961.01.T01:intron 40.0%
TCCTGCAATTCCTCTAAGTT+TGG - Chr1:98142837-98142856 None:intergenic 40.0%
TGAAAATGTTCGGTTTCGGT+TGG + Chr1:98142637-98142656 MsG0180005961.01.T01:CDS 40.0%
TGAGAATTGTGAGTGATTCC+TGG + Chr1:98143373-98143392 MsG0180005961.01.T01:intron 40.0%
TGAGCTTGAAGATGAAGTTG+TGG + Chr1:98145747-98145766 MsG0180005961.01.T01:intron 40.0%
TGTGATTAACCCATCAGGAA+GGG + Chr1:98143959-98143978 MsG0180005961.01.T01:CDS 40.0%
TTATGACACATCACCCAAGT+CGG - Chr1:98145020-98145039 None:intergenic 40.0%
TTGGAATATAAGAGGTCCGT+TGG + Chr1:98144355-98144374 MsG0180005961.01.T01:intron 40.0%
TTGTTGGGTATGAAGCAAGA+GGG + Chr1:98145089-98145108 MsG0180005961.01.T01:intron 40.0%
TTTGCTCTCTTTCTTGAACC+TGG - Chr1:98142680-98142699 None:intergenic 40.0%
TTTGTTGGGTATGAAGCAAG+AGG + Chr1:98145088-98145107 MsG0180005961.01.T01:intron 40.0%
! ACAAAACGGACTCGATTATG+CGG - Chr1:98144446-98144465 None:intergenic 40.0%
! AGGACTGAATATTTGGAGTG+AGG - Chr1:98146672-98146691 None:intergenic 40.0%
! GCTTCCTATAAGCTTTGTGA+AGG + Chr1:98146403-98146422 MsG0180005961.01.T01:intron 40.0%
! TCTGGTTTCCTCATAAACTC+AGG + Chr1:98147040-98147059 MsG0180005961.01.T01:intron 40.0%
! TGACAACTTCAACCTTTTGG+TGG + Chr1:98145721-98145740 MsG0180005961.01.T01:intron 40.0%
! TGTGGCGGGAATAAGAATAA+AGG + Chr1:98144817-98144836 MsG0180005961.01.T01:CDS 40.0%
! TTTTTATTCTCCTCTGCCCT+AGG - Chr1:98145408-98145427 None:intergenic 40.0%
!! AATGGGTTACGAATCATGGA+TGG - Chr1:98145062-98145081 None:intergenic 40.0%
!! ACCAAATGGGTTACGAATCA+TGG - Chr1:98145066-98145085 None:intergenic 40.0%
!! ACCTTACAAACTGGTCTTGT+CGG - Chr1:98146610-98146629 None:intergenic 40.0%
!! CATATGAAATAGGTGTTGGG+AGG + Chr1:98144925-98144944 MsG0180005961.01.T01:intron 40.0%
!! CGTTTGTTCCATTTTGACAG+AGG + Chr1:98142181-98142200 MsG0180005961.01.T01:five_prime_UTR 40.0%
!! GGTATCATGAGAGGTTTTGA+AGG + Chr1:98142782-98142801 MsG0180005961.01.T01:CDS 40.0%
!! GTTCTGGATCCAGGTTTTTA+GGG - Chr1:98146523-98146542 None:intergenic 40.0%
!!! AGTTGTGGTTTTGGAATGAG+AGG + Chr1:98142737-98142756 MsG0180005961.01.T01:CDS 40.0%
!!! ATCATGAGAGGTTTTGAAGG+TGG + Chr1:98142785-98142804 MsG0180005961.01.T01:CDS 40.0%
!!! GCAAGATTTTTGGCAACTGA+TGG - Chr1:98147400-98147419 None:intergenic 40.0%
AAACAAAGCTCGTCCTTCCA+TGG - Chr1:98144977-98144996 None:intergenic 45.0%
AAATACGCTGTTACCAGAGC+AGG - Chr1:98146545-98146564 None:intergenic 45.0%
AAGAAAAGAGTCGGTCGGTT+TGG + Chr1:98145279-98145298 MsG0180005961.01.T01:intron 45.0%
AAGGAGAAACTTGAGTCTGC+TGG + Chr1:98147331-98147350 MsG0180005961.01.T01:CDS 45.0%
AAGGCTTCCCAAATAGAGCT+TGG - Chr1:98146642-98146661 None:intergenic 45.0%
AATGCTCCAAAACCCGACTT+GGG + Chr1:98145004-98145023 MsG0180005961.01.T01:intron 45.0%
ACCGACAAGACCAGTTTGTA+AGG + Chr1:98146606-98146625 MsG0180005961.01.T01:intron 45.0%
ACCTGGTAACCTAACAGAAG+TGG + Chr1:98145468-98145487 MsG0180005961.01.T01:intron 45.0%
ACTGGGAGTCAAACTGTCAA+AGG + Chr1:98146002-98146021 MsG0180005961.01.T01:intron 45.0%
ACTTCTGTTAGGTTACCAGG+TGG - Chr1:98145469-98145488 None:intergenic 45.0%
AGAGCAAAGAGAAAGGGAAG+AGG + Chr1:98142692-98142711 MsG0180005961.01.T01:CDS 45.0%
AGATTGAAGCTACCCTTGGA+CGG + Chr1:98145211-98145230 MsG0180005961.01.T01:intron 45.0%
AGGCTTCCCAAATAGAGCTT+GGG - Chr1:98146641-98146660 None:intergenic 45.0%
AGGGTTTGTGCATGAATGCA+AGG + Chr1:98145108-98145127 MsG0180005961.01.T01:intron 45.0%
AGTATGCCTATTACAGGAGC+AGG + Chr1:98143452-98143471 MsG0180005961.01.T01:intron 45.0%
AGTCTTGCTGCGCTAGAATA+AGG - Chr1:98146080-98146099 None:intergenic 45.0%
ATACGCTACCAAGTGGGAAA+AGG + Chr1:98146971-98146990 MsG0180005961.01.T01:intron 45.0%
ATATACCCCCAACTCCTTGA+TGG - Chr1:98144785-98144804 None:intergenic 45.0%
ATCCATTGTGACGAAAAGCG+TGG - Chr1:98147175-98147194 None:intergenic 45.0%
ATTCAGTCCTGAGTGTGTGA+GGG + Chr1:98146682-98146701 MsG0180005961.01.T01:intron 45.0%
ATTGCGCAAAAGCTCCCATT+TGG - Chr1:98143086-98143105 None:intergenic 45.0%
CAAAAATCTCGATCTGGACC+TGG + Chr1:98142761-98142780 MsG0180005961.01.T01:CDS 45.0%
CAACACAAAGTTTGAGAGGC+GGG + Chr1:98145950-98145969 MsG0180005961.01.T01:intron 45.0%
CATCAATGCATGAGCCTATG+CGG - Chr1:98145852-98145871 None:intergenic 45.0%
CCCAAACTTAGAGGAATTGC+AGG + Chr1:98142833-98142852 MsG0180005961.01.T01:CDS 45.0%
CCTCCTGTATGGTTCAGTTT+CGG + Chr1:98146358-98146377 MsG0180005961.01.T01:intron 45.0%
CGAATCTCGTATAGTAGCCA+AGG + Chr1:98145657-98145676 MsG0180005961.01.T01:intron 45.0%
CGATTTGTGCTGGAAACCTT+TGG + Chr1:98147713-98147732 MsG0180005961.01.T01:three_prime_UTR 45.0%
CGGTTTCGGTTGGACAATTT+GGG + Chr1:98142647-98142666 MsG0180005961.01.T01:CDS 45.0%
CTCCTTTGCTGATGTGGAAA+AGG - Chr1:98147317-98147336 None:intergenic 45.0%
CTCTTTCTTGAACCTGGTTG+TGG - Chr1:98142674-98142693 None:intergenic 45.0%
CTGGGAGTCAAACTGTCAAA+GGG + Chr1:98146003-98146022 MsG0180005961.01.T01:intron 45.0%
CTGGTAGACATAGAAGATGC+TGG + Chr1:98143888-98143907 MsG0180005961.01.T01:CDS 45.0%
CTTCTCTACTCCCTATACCA+AGG - Chr1:98144662-98144681 None:intergenic 45.0%
CTTGATCACTCCCTAACAGT+AGG - Chr1:98143306-98143325 None:intergenic 45.0%
GAAGAGGGCTTAGATTTGAG+AGG + Chr1:98144601-98144620 MsG0180005961.01.T01:intron 45.0%
GAGTGAAGAAAAGAGTCGGT+CGG + Chr1:98145274-98145293 MsG0180005961.01.T01:intron 45.0%
GATTCCTGGCCGTAAGAAAT+GGG + Chr1:98147369-98147388 MsG0180005961.01.T01:CDS 45.0%
GCAACACAAAGTTTGAGAGG+CGG + Chr1:98145949-98145968 MsG0180005961.01.T01:intron 45.0%
GCATATCCTGCTCCTGTAAT+AGG - Chr1:98143461-98143480 None:intergenic 45.0%
GCTTATAGGAAGCCATCTTC+CGG - Chr1:98146396-98146415 None:intergenic 45.0%
GGAGTGAAATGACTATGGCA+TGG + Chr1:98145365-98145384 MsG0180005961.01.T01:intron 45.0%
GTGTGATTAACCCATCAGGA+AGG + Chr1:98143958-98143977 MsG0180005961.01.T01:CDS 45.0%
GTGTGCTCTTGTACAAAGGA+TGG + Chr1:98145568-98145587 MsG0180005961.01.T01:intron 45.0%
GTTGGATCAACAAGTTTGGG+AGG + Chr1:98144898-98144917 MsG0180005961.01.T01:CDS 45.0%
TATGACACATCACCCAAGTC+GGG - Chr1:98145019-98145038 None:intergenic 45.0%
TATTCAGTCCTGAGTGTGTG+AGG + Chr1:98146681-98146700 MsG0180005961.01.T01:intron 45.0%
TCAAGCTCAATGCCACCAAA+AGG - Chr1:98145736-98145755 None:intergenic 45.0%
TCCACTTCTGTTAGGTTACC+AGG - Chr1:98145472-98145491 None:intergenic 45.0%
TCGGTTTCGGTTGGACAATT+TGG + Chr1:98142646-98142665 MsG0180005961.01.T01:CDS 45.0%
TGATTCCTGGCCGTAAGAAA+TGG + Chr1:98147368-98147387 MsG0180005961.01.T01:CDS 45.0%
TGGATTTCAAGAAGGGGAAG+AGG + Chr1:98143908-98143927 MsG0180005961.01.T01:CDS 45.0%
TGTTCCATCACTGTGATTCC+TGG + Chr1:98147355-98147374 MsG0180005961.01.T01:CDS 45.0%
TTAACCCATCAGGAAGGGAA+CGG + Chr1:98143964-98143983 MsG0180005961.01.T01:CDS 45.0%
TTAACCCATTTCTTACGGCC+AGG - Chr1:98147376-98147395 None:intergenic 45.0%
TTGAATGGAGAAGCGAGAGA+GGG - Chr1:98142278-98142297 None:intergenic 45.0%
TTGCCGAAACTGAACCATAC+AGG - Chr1:98146364-98146383 None:intergenic 45.0%
TTGGGCAATCGTCGATAAAG+TGG - Chr1:98142818-98142837 None:intergenic 45.0%
TTGGTATCAAGGCTCCATCA+AGG + Chr1:98144768-98144787 MsG0180005961.01.T01:intron 45.0%
! AAAGGCACACATGGATGTCA+TGG + Chr1:98144835-98144854 MsG0180005961.01.T01:CDS 45.0%
! AACCGAACATTTTCACCTGC+TGG - Chr1:98142632-98142651 None:intergenic 45.0%
! CTTCTTGGCGAAGTATTCGT+CGG - Chr1:98147428-98147447 None:intergenic 45.0%
! GCATGGAAGTGGAAGTTGAT+CGG + Chr1:98145382-98145401 MsG0180005961.01.T01:intron 45.0%
! TAGGCTCATGCATTGATGAG+AGG + Chr1:98145854-98145873 MsG0180005961.01.T01:intron 45.0%
! TGCCTTTTCCACATCAGCAA+AGG + Chr1:98147312-98147331 MsG0180005961.01.T01:CDS 45.0%
! TTCCACGCTTTTCGTCACAA+TGG + Chr1:98147170-98147189 MsG0180005961.01.T01:intron 45.0%
! TTTGGAGTGAGGACAAACGA+AGG - Chr1:98146661-98146680 None:intergenic 45.0%
!! CATTTTGACAGAGGGAAGAG+CGG + Chr1:98142190-98142209 MsG0180005961.01.T01:five_prime_UTR 45.0%
!! GTACAAGAGCACACTTTTGG+TGG - Chr1:98145562-98145581 None:intergenic 45.0%
!! GTTGTTCGATGGTGGACATT+AGG - Chr1:98145638-98145657 None:intergenic 45.0%
!! GTTTGCTTGTCGATTTGTGC+TGG + Chr1:98147703-98147722 MsG0180005961.01.T01:three_prime_UTR 45.0%
!! GTTTGTTGTGCTCTGGTTTC+AGG + Chr1:98147243-98147262 MsG0180005961.01.T01:intron 45.0%
!!! GGTTCTGGATCCAGGTTTTT+AGG - Chr1:98146524-98146543 None:intergenic 45.0%
!!! GTGCTCTGGTTTCAGGTTTT+GGG + Chr1:98147250-98147269 MsG0180005961.01.T01:intron 45.0%
!!! TGGATCCAGGTTTTTAGGGT+TGG - Chr1:98146519-98146538 None:intergenic 45.0%
!!! TGGTTTCAGGTTTTGGGTGA+AGG + Chr1:98147256-98147275 MsG0180005961.01.T01:intron 45.0%
!!! TGTGCTCTGGTTTCAGGTTT+TGG + Chr1:98147249-98147268 MsG0180005961.01.T01:intron 45.0%
!! TTTATAAAAAAAACTTAATA+AGG + Chr1:98143828-98143847 MsG0180005961.01.T01:intron 5.0%
!!! TTTTATAAAAATAAAAGAAA+AGG - Chr1:98143817-98143836 None:intergenic 5.0%
AAGGCTCCATCAAGGAGTTG+GGG + Chr1:98144776-98144795 MsG0180005961.01.T01:intron 50.0%
AGAGAGGGTAACCAGGAAAC+AGG - Chr1:98142263-98142282 None:intergenic 50.0%
AGTTTCCGTTCCCTTCCTGA+TGG - Chr1:98143972-98143991 None:intergenic 50.0%
ATTACCGAACAGGGGACAGT+AGG + Chr1:98145430-98145449 MsG0180005961.01.T01:intron 50.0%
CAAGGCTCCATCAAGGAGTT+GGG + Chr1:98144775-98144794 MsG0180005961.01.T01:intron 50.0%
CAATCCTACTGTCCCCTGTT+CGG - Chr1:98145437-98145456 None:intergenic 50.0%
CAATGCTCCAAAACCCGACT+TGG + Chr1:98145003-98145022 MsG0180005961.01.T01:intron 50.0%
CATGGATGTCATGGATGGTG+AGG + Chr1:98144844-98144863 MsG0180005961.01.T01:CDS 50.0%
CCGAAACTGAACCATACAGG+AGG - Chr1:98146361-98146380 None:intergenic 50.0%
CGACGATTGCCCAAACTTAG+AGG + Chr1:98142824-98142843 MsG0180005961.01.T01:CDS 50.0%
CGAGATTCGTTGTTCGATGG+TGG - Chr1:98145646-98145665 None:intergenic 50.0%
CGCTCTTCCCTCTGTCAAAA+TGG - Chr1:98142192-98142211 None:intergenic 50.0%
CTACCAAGTGGGAAAAGGCA+TGG + Chr1:98146976-98146995 MsG0180005961.01.T01:intron 50.0%
CTCTCTCGCTTCTCCATTCA+AGG + Chr1:98142277-98142296 MsG0180005961.01.T01:CDS 50.0%
CTTGAATGGAGAAGCGAGAG+AGG - Chr1:98142279-98142298 None:intergenic 50.0%
GACAATTTGGGTCCACAACC+AGG + Chr1:98142659-98142678 MsG0180005961.01.T01:CDS 50.0%
GATTGAAGCTACCCTTGGAC+GGG + Chr1:98145212-98145231 MsG0180005961.01.T01:intron 50.0%
GCACACATGGATGTCATGGA+TGG + Chr1:98144839-98144858 MsG0180005961.01.T01:CDS 50.0%
GCAGGCGTCAAAGAGTTCTT+TGG + Chr1:98145975-98145994 MsG0180005961.01.T01:intron 50.0%
GCAGGGAAACGTGAAAACCT+TGG + Chr1:98142514-98142533 MsG0180005961.01.T01:intron 50.0%
GGCAAGATTGAAGCTACCCT+TGG + Chr1:98145207-98145226 MsG0180005961.01.T01:intron 50.0%
GGCCAACTGAAGACTCATCA+GGG - Chr1:98146300-98146319 None:intergenic 50.0%
GGTTACGAATCATGGATGGC+TGG - Chr1:98145058-98145077 None:intergenic 50.0%
GTCATCTGTGTAGCCATGGA+AGG + Chr1:98144961-98144980 MsG0180005961.01.T01:intron 50.0%
GTTTCCGTTCCCTTCCTGAT+GGG - Chr1:98143971-98143990 None:intergenic 50.0%
TAGGAAGCCATCTTCCGGTA+AGG - Chr1:98146391-98146410 None:intergenic 50.0%
TCAAGGCTCCATCAAGGAGT+TGG + Chr1:98144774-98144793 MsG0180005961.01.T01:intron 50.0%
TCCAATAGTGACCCGTCCAA+GGG - Chr1:98145226-98145245 None:intergenic 50.0%
TCTGGACCTGGTATCATGAG+AGG + Chr1:98142773-98142792 MsG0180005961.01.T01:CDS 50.0%
TGCTCTTTGAGCCTCCTGTA+TGG + Chr1:98146347-98146366 MsG0180005961.01.T01:intron 50.0%
TGGGGAAGATGCATCTGTGT+TGG + Chr1:98144880-98144899 MsG0180005961.01.T01:CDS 50.0%
TTAGTATAGTCGGGGGTCCT+TGG + Chr1:98144642-98144661 MsG0180005961.01.T01:intron 50.0%
TTCAAAGAGGCTGACCGCAT+AGG + Chr1:98145835-98145854 MsG0180005961.01.T01:intron 50.0%
TTCAGTCCTGAGTGTGTGAG+GGG + Chr1:98146683-98146702 MsG0180005961.01.T01:intron 50.0%
! AAGTGGAAGTTGATCGGCCT+AGG + Chr1:98145388-98145407 MsG0180005961.01.T01:intron 50.0%
! ACATCACCCAAGTCGGGTTT+TGG - Chr1:98145013-98145032 None:intergenic 50.0%
! AGTGGAAGTTGATCGGCCTA+GGG + Chr1:98145389-98145408 MsG0180005961.01.T01:intron 50.0%
! CAAGGAGCGAGTTGTGGTTT+TGG + Chr1:98142728-98142747 MsG0180005961.01.T01:CDS 50.0%
! CTAGCGCAGCAAGACTGTTT+TGG + Chr1:98146084-98146103 MsG0180005961.01.T01:intron 50.0%
! GCTTGTAGTTTGTGGGAGCT+AGG + Chr1:98146193-98146212 MsG0180005961.01.T01:intron 50.0%
! GTCGGCACGTGCAAGATTTT+TGG - Chr1:98147410-98147429 None:intergenic 50.0%
!! CTGGTCTTGTCGGTTCAGTT+AGG - Chr1:98146600-98146619 None:intergenic 50.0%
!! TCTAGGGTTAGCCTTGACGA+CGG + Chr1:98146493-98146512 MsG0180005961.01.T01:intron 50.0%
AAGTTTGAGAGGCGGGATGC+AGG + Chr1:98145957-98145976 MsG0180005961.01.T01:intron 55.0%
ACAACTCGCTCCTTGTCCTG+CGG - Chr1:98142723-98142742 None:intergenic 55.0%
ACCCTTGGACGGGTCACTAT+TGG + Chr1:98145222-98145241 MsG0180005961.01.T01:intron 55.0%
ACGGCCAGGAATCACAGTGA+TGG - Chr1:98147362-98147381 None:intergenic 55.0%
AGAAGCGAGAGAGGGTAACC+AGG - Chr1:98142270-98142289 None:intergenic 55.0%
AGCAGCTGCTTCTCGCTTCT+TGG - Chr1:98147443-98147462 None:intergenic 55.0%
AGGCTCCATCAAGGAGTTGG+GGG + Chr1:98144777-98144796 MsG0180005961.01.T01:intron 55.0%
AGTCGGGGGTCCTTGGTATA+GGG + Chr1:98144649-98144668 MsG0180005961.01.T01:intron 55.0%
CAGGGGACAGTAGGATTGCA+AGG + Chr1:98145439-98145458 MsG0180005961.01.T01:intron 55.0%
CTCCAATAGTGACCCGTCCA+AGG - Chr1:98145227-98145246 None:intergenic 55.0%
CTTGGACGGGTCACTATTGG+AGG + Chr1:98145225-98145244 MsG0180005961.01.T01:intron 55.0%
GACGGCCAACCCTAAAAACC+TGG + Chr1:98146511-98146530 MsG0180005961.01.T01:intron 55.0%
GCTGTTACCAGAGCAGGTTC+TGG - Chr1:98146539-98146558 None:intergenic 55.0%
GGATTGCAAGGTCAACCACC+TGG + Chr1:98145451-98145470 MsG0180005961.01.T01:intron 55.0%
GGCCCTGATGAGTCTTCAGT+TGG + Chr1:98146295-98146314 MsG0180005961.01.T01:intron 55.0%
GGGCCAACTGAAGACTCATC+AGG - Chr1:98146301-98146320 None:intergenic 55.0%
TAGTCGGGGGTCCTTGGTAT+AGG + Chr1:98144648-98144667 MsG0180005961.01.T01:intron 55.0%
TCTGCTTCGGTGAAACCAGC+AGG + Chr1:98142614-98142633 MsG0180005961.01.T01:CDS 55.0%
! AGTGGGAAAAGGCATGGTGG+TGG + Chr1:98146982-98147001 MsG0180005961.01.T01:intron 55.0%
! CCAAGTGGGAAAAGGCATGG+TGG + Chr1:98146979-98146998 MsG0180005961.01.T01:intron 55.0%
! CCACCATGCCTTTTCCCACT+TGG - Chr1:98146982-98147001 None:intergenic 55.0%
! GGTGTCTCTGGAGACACTGA+CGG + Chr1:98143929-98143948 MsG0180005961.01.T01:CDS 55.0%
!! AAGGGAAGAGGTATTGCCGC+AGG + Chr1:98142704-98142723 MsG0180005961.01.T01:CDS 55.0%
!! AGAAGGGGAAGAGGTGTCTC+TGG + Chr1:98143917-98143936 MsG0180005961.01.T01:CDS 55.0%
!! AGAGGTATTGCCGCAGGACA+AGG + Chr1:98142710-98142729 MsG0180005961.01.T01:CDS 55.0%
!! TTTAGGGTTGGCCGTCGTCA+AGG - Chr1:98146507-98146526 None:intergenic 55.0%
ACACCTCCCCTCACACACTC+AGG - Chr1:98146692-98146711 None:intergenic 60.0%
AGTCCTGAGTGTGTGAGGGG+AGG + Chr1:98146686-98146705 MsG0180005961.01.T01:intron 60.0%
AGTTGATCGGCCTAGGGCAG+AGG + Chr1:98145395-98145414 MsG0180005961.01.T01:intron 60.0%
CCTGGATCCAGAACCTGCTC+TGG + Chr1:98146529-98146548 MsG0180005961.01.T01:intron 60.0%
GCAGGACAAGGAGCGAGTTG+TGG + Chr1:98142722-98142741 MsG0180005961.01.T01:CDS 60.0%
!! CCAGAGCAGGTTCTGGATCC+AGG - Chr1:98146532-98146551 None:intergenic 60.0%
CATGCTCGGCAACGGCAGTG+CGG + Chr1:98146433-98146452 MsG0180005961.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 98142153 98147796 98142153 ID=MsG0180005961.01;Name=MsG0180005961.01
Chr1 mRNA 98142153 98147796 98142153 ID=MsG0180005961.01.T01;Parent=MsG0180005961.01;Name=MsG0180005961.01.T01;_AED=0.40;_eAED=0.46;_QI=83|0.5|0.8|1|1|1|5|313|304
Chr1 exon 98142153 98142298 98142153 ID=MsG0180005961.01.T01:exon:16413;Parent=MsG0180005961.01.T01
Chr1 exon 98142518 98142857 98142518 ID=MsG0180005961.01.T01:exon:16414;Parent=MsG0180005961.01.T01
Chr1 exon 98143850 98144001 98143850 ID=MsG0180005961.01.T01:exon:16415;Parent=MsG0180005961.01.T01
Chr1 exon 98144779 98144919 98144779 ID=MsG0180005961.01.T01:exon:16416;Parent=MsG0180005961.01.T01
Chr1 exon 98147265 98147796 98147265 ID=MsG0180005961.01.T01:exon:16417;Parent=MsG0180005961.01.T01
Chr1 five_prime_UTR 98142153 98142235 98142153 ID=MsG0180005961.01.T01:five_prime_utr;Parent=MsG0180005961.01.T01
Chr1 CDS 98142236 98142298 98142236 ID=MsG0180005961.01.T01:cds;Parent=MsG0180005961.01.T01
Chr1 CDS 98142518 98142857 98142518 ID=MsG0180005961.01.T01:cds;Parent=MsG0180005961.01.T01
Chr1 CDS 98143850 98144001 98143850 ID=MsG0180005961.01.T01:cds;Parent=MsG0180005961.01.T01
Chr1 CDS 98144779 98144919 98144779 ID=MsG0180005961.01.T01:cds;Parent=MsG0180005961.01.T01
Chr1 CDS 98147265 98147483 98147265 ID=MsG0180005961.01.T01:cds;Parent=MsG0180005961.01.T01
Chr1 three_prime_UTR 98147484 98147796 98147484 ID=MsG0180005961.01.T01:three_prime_utr;Parent=MsG0180005961.01.T01
Gene Sequence

>MsG0180005961.01.T01

ATGAGTGCTGCTGCTTCTCTTATTCCTGTTTCCTGGTTACCCTCTCTCGCTTCTCCATTCAAGGGAAACGTGAAAACCTTGGTAGCAAAACCATATCTATGTCCATGTCTTAAAATTCAGCGAATGAAACCTCGTGTTTTTGTTGTTAATAAGGCTGCTTCTGCTTCGGTGAAACCAGCAGGTGAAAATGTTCGGTTTCGGTTGGACAATTTGGGTCCACAACCAGGTTCAAGAAAGAGAGCAAAGAGAAAGGGAAGAGGTATTGCCGCAGGACAAGGAGCGAGTTGTGGTTTTGGAATGAGAGGTCAAAAATCTCGATCTGGACCTGGTATCATGAGAGGTTTTGAAGGTGGTCAGATGCCACTTTATCGACGATTGCCCAAACTTAGAGGAATTGCAGGAGGTATGCATGCTGGATTGCCGAAATATGTCCACATCAATCTGGTAGACATAGAAGATGCTGGATTTCAAGAAGGGGAAGAGGTGTCTCTGGAGACACTGACGGAGAAACGTGTGATTAACCCATCAGGAAGGGAACGGAAACTTCTATTGAAGGCTCCATCAAGGAGTTGGGGGTATATCATTGAAGATTATGTGGCGGGAATAAGAATAAAGGCACACATGGATGTCATGGATGGTGAGGAAGTAATTTCAGTTGGGGAAGATGCATCTGTGTTGGATCAACAAGTTTGGGAGGTTTTGGGTGAAGGAGAACTAAGCAAGAAGTTGACAATAAAAGCTGGTGCCTTTTCCACATCAGCAAAGGAGAAACTTGAGTCTGCTGGTTGTTCCATCACTGTGATTCCTGGCCGTAAGAAATGGGTTAAGCCATCAGTTGCCAAAAATCTTGCACGTGCCGACGAATACTTCGCCAAGAAGCGAGAAGCAGCTGCTTCTGAACCAGATTCTGTTTAA

Protein sequence

>MsG0180005961.01.T01

MSAAASLIPVSWLPSLASPFKGNVKTLVAKPYLCPCLKIQRMKPRVFVVNKAASASVKPAGENVRFRLDNLGPQPGSRKRAKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVHINLVDIEDAGFQEGEEVSLETLTEKRVINPSGRERKLLLKAPSRSWGYIIEDYVAGIRIKAHMDVMDGEEVISVGEDASVLDQQVWEVLGEGELSKKLTIKAGAFSTSAKEKLESAGCSITVIPGRKKWVKPSVAKNLARADEYFAKKREAAASEPDSV*