AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020753.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020753.01.T01 MTR_4g057845 88.811 143 13 1 12 151 2 144 2.69e-87 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020753.01.T01 AT3G45050 60.284 141 51 2 12 151 22 158 6.89e-53 165
MsG0480020753.01.T01 AT3G45050 60.284 141 51 2 12 151 22 158 6.89e-53 165
MsG0480020753.01.T01 AT3G45050 60.284 141 51 2 12 151 22 158 6.89e-53 165
MsG0480020753.01.T01 AT3G45050 56.637 113 44 2 12 123 22 130 7.58e-35 118

Find 9 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCAGTAGCTCCACTTCTT+TGG 0.304778 4:-47654956 None:intergenic
TCTTGATCCATTCCACTTGA+AGG 0.374765 4:+47655142 MsG0480020753.01.T01:exon
TACTGCACAAAATGCTCTTC+TGG 0.383793 4:+47654971 MsG0480020753.01.T01:exon
TATGAACTAAATCTAGTGAT+TGG 0.403779 4:+47655099 MsG0480020753.01.T01:exon
ACTAAATCTAGTGATTGGTT+AGG 0.471718 4:+47655104 MsG0480020753.01.T01:exon
TGTTCAACATGTGGTGGAAG+TGG 0.492050 4:+47655001 MsG0480020753.01.T01:exon
ACACCAGACTTCCAAAGAAG+TGG 0.545200 4:+47654945 MsG0480020753.01.T01:intron
GGCAGAAATTGTTCAACATG+TGG 0.656597 4:+47654992 MsG0480020753.01.T01:exon
AGAAATTGTTCAACATGTGG+TGG 0.674411 4:+47654995 MsG0480020753.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAATTTAGAAGAA+AGG - Chr4:47654895-47654914 None:intergenic 10.0%
!! TCAAAAAAAAAAAAAATCAT+TGG + Chr4:47653253-47653272 MsG0480020753.01.T01:intron 10.0%
!! CAATTAAATCATATTAAGAA+TGG - Chr4:47654673-47654692 None:intergenic 15.0%
!!! ATTATTTTTTTGACTGAATA+CGG + Chr4:47655245-47655264 MsG0480020753.01.T01:exon 15.0%
!!! TAATTATGGTAACTTAATTT+TGG - Chr4:47652652-47652671 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG + Chr4:47653933-47653952 MsG0480020753.01.T01:intron 15.0%
!! AAGAAAACTATCTAAAAACA+TGG + Chr4:47654832-47654851 MsG0480020753.01.T01:CDS 20.0%
!! ACAGTTAAAATAAGAAGAAA+AGG + Chr4:47652189-47652208 MsG0480020753.01.T01:intron 20.0%
!! ATAGTTTCACATGAAAAATT+TGG - Chr4:47654700-47654719 None:intergenic 20.0%
!! CAGGTAATAATTTAAGAAAA+CGG - Chr4:47654333-47654352 None:intergenic 20.0%
!! CAGTTAAAATAAGAAGAAAA+GGG + Chr4:47652190-47652209 MsG0480020753.01.T01:intron 20.0%
!! CTATAGTAAAACTTAATCAT+TGG + Chr4:47653109-47653128 MsG0480020753.01.T01:intron 20.0%
!! TAAAATTTCATAAAGCTTAG+TGG + Chr4:47652445-47652464 MsG0480020753.01.T01:intron 20.0%
!! TCTATGTTAATAGCATAAAA+CGG - Chr4:47651975-47651994 None:intergenic 20.0%
!! TTGATGTTGTAAAATGAAAA+GGG + Chr4:47653591-47653610 MsG0480020753.01.T01:intron 20.0%
!!! AAAAGATTTTGTAGAATTTG+AGG + Chr4:47653368-47653387 MsG0480020753.01.T01:intron 20.0%
!!! AATAATTTTTTTTTTGGTGG+TGG - Chr4:47654429-47654448 None:intergenic 20.0%
!!! ACTATGATGATTTTTAACAT+AGG - Chr4:47652554-47652573 None:intergenic 20.0%
!!! CAATGATTAAGTTTTACTAT+AGG - Chr4:47653111-47653130 None:intergenic 20.0%
!!! GCAGGTAATAATTTTTTTTT+TGG - Chr4:47654435-47654454 None:intergenic 20.0%
!!! GGTAATAATTTTTTTTTTGG+TGG - Chr4:47654432-47654451 None:intergenic 20.0%
!!! GTTTTAGGTACTAAATAAAT+TGG + Chr4:47652848-47652867 MsG0480020753.01.T01:intron 20.0%
!!! TATATAGTATTTGATGATTC+TGG + Chr4:47653447-47653466 MsG0480020753.01.T01:intron 20.0%
!!! TTTCTTCTTATTTTAACTGT+GGG - Chr4:47652189-47652208 None:intergenic 20.0%
!!! TTTTCTTCTTATTTTAACTG+TGG - Chr4:47652190-47652209 None:intergenic 20.0%
!!! TTTTTAACATAGGAATGAAT+TGG - Chr4:47652544-47652563 None:intergenic 20.0%
! ACATACACTAATATCAATCA+CGG - Chr4:47654163-47654182 None:intergenic 25.0%
! ATGATTTATGACTAGACATT+TGG - Chr4:47652971-47652990 None:intergenic 25.0%
! CTTTACTAGTATTAGAATAG+TGG + Chr4:47653069-47653088 MsG0480020753.01.T01:intron 25.0%
! GTGTTTGAATTAAATGAGTT+TGG + Chr4:47652778-47652797 MsG0480020753.01.T01:intron 25.0%
! GTTGATGTTGTAAAATGAAA+AGG + Chr4:47653590-47653609 MsG0480020753.01.T01:intron 25.0%
! TAAATTGAAATCTCACTTTG+AGG - Chr4:47652366-47652385 None:intergenic 25.0%
! TAACAAGACAGTTATCTAAA+TGG + Chr4:47652302-47652321 MsG0480020753.01.T01:intron 25.0%
! TACCTCATAATTTAAACTGA+GGG - Chr4:47653487-47653506 None:intergenic 25.0%
! TATGAACTAAATCTAGTGAT+TGG + Chr4:47655099-47655118 MsG0480020753.01.T01:exon 25.0%
! TATGTTTATGACTAGACATT+TGG - Chr4:47653019-47653038 None:intergenic 25.0%
! TATTCTAATACTAGTAAAGC+TGG - Chr4:47653068-47653087 None:intergenic 25.0%
! TCTCAGATTATTAACAATGT+TGG + Chr4:47654135-47654154 MsG0480020753.01.T01:intron 25.0%
! TTACCTCATAATTTAAACTG+AGG - Chr4:47653488-47653507 None:intergenic 25.0%
! TTGAATTAAATGAGTTTGGT+AGG + Chr4:47652782-47652801 MsG0480020753.01.T01:intron 25.0%
!! AAGATTTTCATGTTCTTGTT+TGG - Chr4:47654218-47654237 None:intergenic 25.0%
!! ACATAAAATTTTCCTTCAAG+TGG - Chr4:47655157-47655176 None:intergenic 25.0%
!! CTTTGATGATAAGTTTCAAA+AGG + Chr4:47653400-47653419 MsG0480020753.01.T01:intron 25.0%
!! TACTCTTGCAACAATTTTAA+AGG + Chr4:47652235-47652254 MsG0480020753.01.T01:intron 25.0%
!! TCATTAATTTTCAGAACAGT+AGG + Chr4:47652595-47652614 MsG0480020753.01.T01:intron 25.0%
!! TGCAATGTATAGTATGTTTT+TGG + Chr4:47655190-47655209 MsG0480020753.01.T01:exon 25.0%
!!! ACTGTTCTGAAAATTAATGA+AGG - Chr4:47652595-47652614 None:intergenic 25.0%
!!! ATGTGGTTTTTACTTTTTAC+TGG + Chr4:47652488-47652507 MsG0480020753.01.T01:intron 25.0%
!!! TCATTTTTCTCCAAAAATAG+AGG - Chr4:47652112-47652131 None:intergenic 25.0%
!!! TGTAGTTTTGCTCTTATATA+TGG + Chr4:47655035-47655054 MsG0480020753.01.T01:exon 25.0%
!!! TGTGGTTTTTACTTTTTACT+GGG + Chr4:47652489-47652508 MsG0480020753.01.T01:intron 25.0%
AAAATCATCATAGTCACGTT+AGG + Chr4:47652560-47652579 MsG0480020753.01.T01:intron 30.0%
AAAGGATAAGAAAGCAGAAA+GGG + Chr4:47652253-47652272 MsG0480020753.01.T01:intron 30.0%
AATTAATGCTGCTGGAAAAT+AGG + Chr4:47652667-47652686 MsG0480020753.01.T01:intron 30.0%
ACAATACAAAGAAGGATGAT+TGG - Chr4:47652396-47652415 None:intergenic 30.0%
ACTGATACTAACAATAGAGA+TGG - Chr4:47653815-47653834 None:intergenic 30.0%
ATCCCTCAGTTTAAATTATG+AGG + Chr4:47653482-47653501 MsG0480020753.01.T01:intron 30.0%
ATGACATAATTCGATGTAAG+AGG - Chr4:47653917-47653936 None:intergenic 30.0%
CAATTTCATGTGAGAATAGT+CGG - Chr4:47653514-47653533 None:intergenic 30.0%
CATTGGAGAGAGTTTATATA+CGG - Chr4:47652156-47652175 None:intergenic 30.0%
CTGATACTAACAATAGAGAT+GGG - Chr4:47653814-47653833 None:intergenic 30.0%
GACAATGCATAAAATATGCA+AGG + Chr4:47654384-47654403 MsG0480020753.01.T01:intron 30.0%
GCAGATCTAATAAATGACTA+TGG + Chr4:47651871-47651890 MsG0480020753.01.T01:exon 30.0%
GTCTTAATTTAACTCTTGTG+TGG + Chr4:47652701-47652720 MsG0480020753.01.T01:intron 30.0%
TAAAGGATAAGAAAGCAGAA+AGG + Chr4:47652252-47652271 MsG0480020753.01.T01:intron 30.0%
TATGACTATATTCAAGTCTC+CGG - Chr4:47651931-47651950 None:intergenic 30.0%
TTGAATATAGTCATATGCGT+AGG + Chr4:47651936-47651955 MsG0480020753.01.T01:intron 30.0%
! AAATTTTCCTTCAAGTGGAA+TGG - Chr4:47655152-47655171 None:intergenic 30.0%
! AATTTTCAGAACAGTAGGAT+TGG + Chr4:47652600-47652619 MsG0480020753.01.T01:intron 30.0%
! ACTAAATCTAGTGATTGGTT+AGG + Chr4:47655104-47655123 MsG0480020753.01.T01:exon 30.0%
! ATGTTCTTGTTTGGAAAGTA+AGG - Chr4:47654209-47654228 None:intergenic 30.0%
! TTTTCCAGCAGCATTAATTA+TGG - Chr4:47652666-47652685 None:intergenic 30.0%
! TTTTCTCCAAAAATAGAGGT+GGG - Chr4:47652108-47652127 None:intergenic 30.0%
! TTTTTCTCCAAAAATAGAGG+TGG - Chr4:47652109-47652128 None:intergenic 30.0%
!!! TAAAGCTTAGTGGTTAGTTT+TGG + Chr4:47652455-47652474 MsG0480020753.01.T01:intron 30.0%
AACATAGGAATGAATTGGCA+CGG - Chr4:47652539-47652558 None:intergenic 35.0%
ACTCTTGTGTGGTTTCTATA+TGG + Chr4:47652712-47652731 MsG0480020753.01.T01:intron 35.0%
AGAAATTGTTCAACATGTGG+TGG + Chr4:47654995-47655014 MsG0480020753.01.T01:exon 35.0%
AGCACAAACTAGCAACATAT+AGG + Chr4:47654510-47654529 MsG0480020753.01.T01:intron 35.0%
ATCAGTGGATCATTTGCTTA+GGG - Chr4:47653548-47653567 None:intergenic 35.0%
CTGCAAGTACAATACAAAGA+AGG - Chr4:47652404-47652423 None:intergenic 35.0%
GAGAGTTTATATACGGATGA+TGG - Chr4:47652149-47652168 None:intergenic 35.0%
GATCCACTGATAAGAACTTA+TGG + Chr4:47653557-47653576 MsG0480020753.01.T01:intron 35.0%
GTCATTTATTAGATCTGCAC+TGG - Chr4:47651869-47651888 None:intergenic 35.0%
GTTACCATAATTAATGCTGC+TGG + Chr4:47652659-47652678 MsG0480020753.01.T01:intron 35.0%
TAGCCATAAGTTCTTATCAG+TGG - Chr4:47653563-47653582 None:intergenic 35.0%
TAGGTCTCTAGCATAGAAAA+TGG + Chr4:47653302-47653321 MsG0480020753.01.T01:intron 35.0%
TATAATGTAACCATGTGTGC+TGG - Chr4:47654104-47654123 None:intergenic 35.0%
TATCAGTGGATCATTTGCTT+AGG - Chr4:47653549-47653568 None:intergenic 35.0%
TGAAGTCACAATTGCAAACA+AGG + Chr4:47653657-47653676 MsG0480020753.01.T01:CDS 35.0%
TGCATAAAATATGCAAGGTC+CGG + Chr4:47654389-47654408 MsG0480020753.01.T01:intron 35.0%
TGGAGTTCTTAAACTCACTT+GGG + Chr4:47653129-47653148 MsG0480020753.01.T01:intron 35.0%
TTCAAAGAATGTGAAGCTTG+TGG + Chr4:47654731-47654750 MsG0480020753.01.T01:CDS 35.0%
TTGGAGTTCTTAAACTCACT+TGG + Chr4:47653128-47653147 MsG0480020753.01.T01:intron 35.0%
! ACAAAGAAGGATGATTGGTT+AGG - Chr4:47652391-47652410 None:intergenic 35.0%
! GTGATTCGTTCAGTAGTTTT+AGG + Chr4:47652833-47652852 MsG0480020753.01.T01:intron 35.0%
! TTCTTGTTTGGAAAGTAAGG+TGG - Chr4:47654206-47654225 None:intergenic 35.0%
!! TAAATTTAGCTGGGCTAGTT+TGG + Chr4:47653225-47653244 MsG0480020753.01.T01:intron 35.0%
!! TTTTGTTTGTCGTCTTTGTG+CGG + Chr4:47651778-47651797 MsG0480020753.01.T01:exon 35.0%
!!! ATTTTTTTTTTGGTGGTGGC+CGG - Chr4:47654425-47654444 None:intergenic 35.0%
AAACATGGCAACTCGATTCA+CGG + Chr4:47654847-47654866 MsG0480020753.01.T01:CDS 40.0%
AAAGAATGTGAAGCTTGTGG+AGG + Chr4:47654734-47654753 MsG0480020753.01.T01:CDS 40.0%
AGTTGCTATATTGCTGCTCT+AGG + Chr4:47653283-47653302 MsG0480020753.01.T01:intron 40.0%
ATCGAAATTGAGACCTTGAG+AGG - Chr4:47653194-47653213 None:intergenic 40.0%
CAAATGCGGTTTGTGTACTT+GGG + Chr4:47652892-47652911 MsG0480020753.01.T01:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + Chr4:47654391-47654410 MsG0480020753.01.T01:intron 40.0%
CTTGTGTGGTTTCTATATGG+TGG + Chr4:47652715-47652734 MsG0480020753.01.T01:intron 40.0%
GCATAAAATATGCAAGGTCC+GGG + Chr4:47654390-47654409 MsG0480020753.01.T01:intron 40.0%
GGCAGAAATTGTTCAACATG+TGG + Chr4:47654992-47655011 MsG0480020753.01.T01:exon 40.0%
GTAAGCAGCGAAGTGATATT+GGG - Chr4:47652344-47652363 None:intergenic 40.0%
GTGTCTCTCTTCTACATAAG+TGG - Chr4:47654050-47654069 None:intergenic 40.0%
GTTCTTAAACTCACTTGGGT+TGG + Chr4:47653133-47653152 MsG0480020753.01.T01:intron 40.0%
TACACAAACCGCATTTGAGA+TGG - Chr4:47652889-47652908 None:intergenic 40.0%
TACTGCACAAAATGCTCTTC+TGG + Chr4:47654971-47654990 MsG0480020753.01.T01:exon 40.0%
TACTGGGCTGTTCTTTAGTT+TGG + Chr4:47652505-47652524 MsG0480020753.01.T01:intron 40.0%
TAGCCCAGCTAAATTTACAC+CGG - Chr4:47653222-47653241 None:intergenic 40.0%
TCAAATGCGGTTTGTGTACT+TGG + Chr4:47652891-47652910 MsG0480020753.01.T01:intron 40.0%
TCTTGATCCATTCCACTTGA+AGG + Chr4:47655142-47655161 MsG0480020753.01.T01:exon 40.0%
TGACACTAACATGTAGATGC+AGG - Chr4:47654453-47654472 None:intergenic 40.0%
TGCTCTTTCCATCTCAAATG+CGG + Chr4:47652878-47652897 MsG0480020753.01.T01:intron 40.0%
TGTAAGAGGATCATTTGTGC+CGG - Chr4:47653903-47653922 None:intergenic 40.0%
! ACTCAACCCACCTCTATTTT+TGG + Chr4:47652099-47652118 MsG0480020753.01.T01:intron 40.0%
!! TTCTGAAGAAAGTGCTGAGA+AGG + Chr4:47654808-47654827 MsG0480020753.01.T01:CDS 40.0%
!!! TTTTTTTTTTGGTGGTGGCC+GGG - Chr4:47654424-47654443 None:intergenic 40.0%
ACACCAGACTTCCAAAGAAG+TGG + Chr4:47654945-47654964 MsG0480020753.01.T01:intron 45.0%
AGATCGGAGACATGGTATTC+CGG + Chr4:47651909-47651928 MsG0480020753.01.T01:CDS 45.0%
AGCCCAGCTAAATTTACACC+GGG - Chr4:47653221-47653240 None:intergenic 45.0%
ATACGTATTGTGTCCGACAC+CGG + Chr4:47653881-47653900 MsG0480020753.01.T01:intron 45.0%
ATGAAGCACAGTCTCAGACA+TGG - Chr4:47653981-47654000 None:intergenic 45.0%
CAGTAGCAGCAACGTTTGTT+GGG + Chr4:47653729-47653748 MsG0480020753.01.T01:CDS 45.0%
GACCCGGTGTAAATTTAGCT+GGG + Chr4:47653216-47653235 MsG0480020753.01.T01:intron 45.0%
GGATCTCTGTACAAGAAGAG+TGG - Chr4:47653762-47653781 None:intergenic 45.0%
GGTAAGCAGCGAAGTGATAT+TGG - Chr4:47652345-47652364 None:intergenic 45.0%
GTTAGTGTCATGTGTCTCTG+TGG + Chr4:47654463-47654482 MsG0480020753.01.T01:intron 45.0%
TCATCAGATTAAGCGTGTCC+TGG + Chr4:47653852-47653871 MsG0480020753.01.T01:intron 45.0%
! AGTAGCAGCAACGTTTGTTG+GGG + Chr4:47653730-47653749 MsG0480020753.01.T01:CDS 45.0%
! GTCTCAATTTCGATTCGACC+CGG + Chr4:47653200-47653219 MsG0480020753.01.T01:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + Chr4:47654362-47654381 MsG0480020753.01.T01:intron 45.0%
! TGTCTGAGACTGTGCTTCAT+AGG + Chr4:47653981-47654000 MsG0480020753.01.T01:intron 45.0%
! TGTTCAACATGTGGTGGAAG+TGG + Chr4:47655001-47655020 MsG0480020753.01.T01:exon 45.0%
!! AAAGCAGAAAGGGTACCAGT+TGG + Chr4:47652263-47652282 MsG0480020753.01.T01:intron 45.0%
!! GTTTTGGTGTGCATGCAATG+TGG + Chr4:47652471-47652490 MsG0480020753.01.T01:intron 45.0%
!! TGGGCTGTTCTTTAGTTTGG+TGG + Chr4:47652508-47652527 MsG0480020753.01.T01:intron 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+GGG - Chr4:47654423-47654442 None:intergenic 45.0%
AACGTTGCAGATCGGAGACA+TGG + Chr4:47651901-47651920 MsG0480020753.01.T01:CDS 50.0%
ATGGCAACTCGATTCACGGA+TGG + Chr4:47654851-47654870 MsG0480020753.01.T01:CDS 50.0%
CAAAACTTCCGAGTCCACAC+AGG + Chr4:47653781-47653800 MsG0480020753.01.T01:CDS 50.0%
CACAATACGTATCCGACACC+AGG - Chr4:47653873-47653892 None:intergenic 50.0%
CACGTATCCTTCACCTTTGC+AGG - Chr4:47654777-47654796 None:intergenic 50.0%
CGACCCGGTGTAAATTTAGC+TGG + Chr4:47653215-47653234 MsG0480020753.01.T01:intron 50.0%
CTGTGGGACACACATCTCAT+TGG - Chr4:47652173-47652192 None:intergenic 50.0%
CTTGGAGTATGCTCCTCTCA+AGG + Chr4:47653178-47653197 MsG0480020753.01.T01:intron 50.0%
GATTAAGCGTGTCCTGGTGT+CGG + Chr4:47653858-47653877 MsG0480020753.01.T01:intron 50.0%
GCAGTAGCAGCAACGTTTGT+TGG + Chr4:47653728-47653747 MsG0480020753.01.T01:CDS 50.0%
GGTATATGTCCAGCCTGCAA+AGG + Chr4:47654761-47654780 MsG0480020753.01.T01:CDS 50.0%
GTGCAGTAGCTCCACTTCTT+TGG - Chr4:47654959-47654978 None:intergenic 50.0%
GTGTACTTGGGAGCCTATCT+AGG + Chr4:47652904-47652923 MsG0480020753.01.T01:intron 50.0%
GTTACTGACCTGTGTGGACT+CGG - Chr4:47653792-47653811 None:intergenic 50.0%
GTTCTGTTCTCTCCACCAAC+TGG - Chr4:47652281-47652300 None:intergenic 50.0%
TATCCTTCACCTTTGCAGGC+TGG - Chr4:47654773-47654792 None:intergenic 50.0%
TGACCTGAGTGACTCGACAA+CGG - Chr4:47652944-47652963 None:intergenic 50.0%
TGGCAACTCGATTCACGGAT+GGG + Chr4:47654852-47654871 MsG0480020753.01.T01:CDS 50.0%
TGGCTCAACGGAACCTAGAT+AGG - Chr4:47652920-47652939 None:intergenic 50.0%
TGTGAAGCTTGTGGAGGTTC+TGG + Chr4:47654740-47654759 MsG0480020753.01.T01:CDS 50.0%
! AGGATCATTTGTGCCGGTGT+CGG - Chr4:47653897-47653916 None:intergenic 50.0%
! CTGTGTGGACTCGGAAGTTT+TGG - Chr4:47653783-47653802 None:intergenic 50.0%
! CTTGAGAGGAGCATACTCCA+AGG - Chr4:47653180-47653199 None:intergenic 50.0%
! GCTCCACTTCTTTGGAAGTC+TGG - Chr4:47654951-47654970 None:intergenic 50.0%
! TGTAACCATGTGTGCTGGTG+TGG - Chr4:47654099-47654118 None:intergenic 50.0%
! TTGGCCTGATGATGTTGGCT+TGG + Chr4:47653152-47653171 MsG0480020753.01.T01:intron 50.0%
!! AGATGGGTTACTGACCTGTG+TGG - Chr4:47653798-47653817 None:intergenic 50.0%
!! ATGATGTTGGCTTGGGACCT+TGG + Chr4:47653160-47653179 MsG0480020753.01.T01:intron 50.0%
!! TGGCCTGATGATGTTGGCTT+GGG + Chr4:47653153-47653172 MsG0480020753.01.T01:intron 50.0%
!! TTGGGTTGGCCTGATGATGT+TGG + Chr4:47653147-47653166 MsG0480020753.01.T01:intron 50.0%
CCAACTGAGCTAAGCTCACG+AGG - Chr4:47654360-47654379 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + Chr4:47654357-47654376 MsG0480020753.01.T01:intron 55.0%
CTGCTACACGTGACGCAACT+CGG + Chr4:47654565-47654584 MsG0480020753.01.T01:intron 55.0%
GACCTGAGTGACTCGACAAC+GGG - Chr4:47652943-47652962 None:intergenic 55.0%
GAGATCAGTCGCCGTCTCAT+CGG + Chr4:47653679-47653698 MsG0480020753.01.T01:CDS 55.0%
GCCACTGAAACTGCAGTCTC+AGG - Chr4:47653710-47653729 None:intergenic 55.0%
GCCTGAGACTGCAGTTTCAG+TGG + Chr4:47653706-47653725 MsG0480020753.01.T01:CDS 55.0%
GCGTCGTCAACGTTGCAGAT+CGG + Chr4:47651893-47651912 MsG0480020753.01.T01:CDS 55.0%
GGTCCCAAGCCAACATCATC+AGG - Chr4:47653159-47653178 None:intergenic 55.0%
GTGTACCACACCAGCACACA+TGG + Chr4:47654091-47654110 MsG0480020753.01.T01:intron 55.0%
GTTGCGTCACGTGTAGCAGT+TGG - Chr4:47654564-47654583 None:intergenic 55.0%
TGTCCAGCCTGCAAAGGTGA+AGG + Chr4:47654767-47654786 MsG0480020753.01.T01:CDS 55.0%
! TGTGTGCTGGTGTGGTACAC+TGG - Chr4:47654091-47654110 None:intergenic 55.0%
!! GCAGAAAGGGTACCAGTTGG+TGG + Chr4:47652266-47652285 MsG0480020753.01.T01:intron 55.0%
CACCCGTTGTCGAGTCACTC+AGG + Chr4:47652938-47652957 MsG0480020753.01.T01:intron 60.0%
CTCGACAACGGGTGGCTCAA+CGG - Chr4:47652932-47652951 None:intergenic 60.0%
CTGAGTGACTCGACAACGGG+TGG - Chr4:47652940-47652959 None:intergenic 60.0%
GCTAAGCTCACGAGGACAGC+AGG - Chr4:47654352-47654371 None:intergenic 60.0%
!! CTCAGGCAGTGCCGATGAGA+CGG - Chr4:47653693-47653712 None:intergenic 60.0%
AAGGTCCGGGGTTCGATCCC+CGG + Chr4:47654403-47654422 MsG0480020753.01.T01:intron 65.0%
GGTGGCCGGGGATCGAACCC+CGG - Chr4:47654411-47654430 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 47651774 47655288 47651774 ID=MsG0480020753.01;
Chr4 mRNA 47651774 47655288 47651774 ID=MsG0480020753.01.T01;Parent=MsG0480020753.01
Chr4 exon 47651774 47651953 47651774 ID=MsG0480020753.01.T01.exon;Parent=MsG0480020753.01.T01
Chr4 CDS 47651884 47651953 47651884 ID=MsG0480020753.01.T01.cds;Parent=MsG0480020753.01.T01
Chr4 CDS 47653654 47653802 47653654 ID=MsG0480020753.01.T01.cds;Parent=MsG0480020753.01.T01
Chr4 exon 47653654 47653802 47653654 ID=MsG0480020753.01.T01.exon;Parent=MsG0480020753.01.T01
Chr4 CDS 47654725 47654873 47654725 ID=MsG0480020753.01.T01.cds;Parent=MsG0480020753.01.T01
Chr4 exon 47654725 47654873 47654725 ID=MsG0480020753.01.T01.exon;Parent=MsG0480020753.01.T01
Chr4 CDS 47654952 47655039 47654952 ID=MsG0480020753.01.T01.cds;Parent=MsG0480020753.01.T01
Chr4 exon 47654952 47655288 47654952 ID=MsG0480020753.01.T01.exon;Parent=MsG0480020753.01.T01
Gene Sequence

>MsG0480020753.01.T01

ATGACTATGGCGTCGTCAACGTTGCAGATCGGAGACATGGTATTCCGGAGACTTGAATATAGTCATATGCATGTGAAGTCACAATTGCAAACAAGGAGATCAGTCGCCGTCTCATCGGCACTGCCTGAGACTGCAGTTTCAGTGGCAGTAGCAGCAACGTTTGTTGGGGCAGCAGCCACTCTTCTTGTACAGAGATCCAAAACTTCCGAGTCCACACAGATTGAATTCAAAGAATGTGAAGCTTGTGGAGGTTCTGGTATATGTCCAGCCTGCAAAGGTGAAGGATACGTGCTTAAAAAACGTTCTGAAGAAAGTGCTGAGAAGGCAAGAAAACTATCTAAAAACATGGCAACTCGATTCACGGATGGACTTCCAAAGAAGTGGAGCTACTGCACAAAATGCTCTTCTGGCAGAAATTGTTCAACATGTGGTGGAAGTGGAAAGCTAAACTTGTAG

Protein sequence

>MsG0480020753.01.T01

MTMASSTLQIGDMVFRRLEYSHMHVKSQLQTRRSVAVSSALPETAVSVAVAATFVGAAATLLVQRSKTSESTQIEFKECEACGGSGICPACKGEGYVLKKRSEESAEKARKLSKNMATRFTDGLPKKWSYCTKCSSGRNCSTCGGSGKLNL*