AlfalfaGEDB | MsG0680030881.01

M. sativa cultivar ZhongmuNo.1 / MsG0680030881.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030881.01.T01	XP_024641978.2	57.764	161	62	4	1	161	82	236	4.54E-49	179

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030881.01.T01	A0A396HGV7	57.764	161	62	4	1	161	84	238	2.23e-49	179

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0680030881.01	0.809741	1.629180e-50	9.643078e-48
MsG0080047957.01	MsG0680030881.01	0.808064	3.721775e-50	2.107114e-47
MsG0080048404.01	MsG0680030881.01	0.826114	3.239563e-54	3.010209e-51
MsG0080048461.01	MsG0680030881.01	0.823333	1.465943e-53	1.258419e-50
MsG0080048462.01	MsG0680030881.01	0.829501	4.968563e-55	5.094362e-52
MsG0080048785.01	MsG0680030881.01	0.803783	2.956732e-49	1.499057e-46
MsG0080048787.01	MsG0680030881.01	0.842465	2.543258e-58	3.859737e-55
MsG0080048856.01	MsG0680030881.01	0.855442	6.291976e-62	1.452847e-58
MsG0080048874.01	MsG0680030881.01	0.800556	1.363753e-48	6.368982e-46
MsG0080048892.01	MsG0680030881.01	0.815886	7.344639e-52	5.126158e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 40 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGAATGAAGTGGCTGT+TGG	0.490439	6:+11095136	MsG0680030881.01.T01:CDS
AAATGATGTTGAAGTTTGTG+AGG	0.647447	6:+11095018	MsG0680030881.01.T01:CDS
AAGCTTCTCGAGCGGTTGCA+AGG	0.538858	6:+11095245	MsG0680030881.01.T01:CDS
AAGGGAATGAAGTGGCTGTT+GGG	0.455501	6:+11095137	MsG0680030881.01.T01:CDS
AATGATGTTGAAGTTTGTGA+GGG	0.658615	6:+11095019	MsG0680030881.01.T01:CDS
ACGGAAGAAGTTAAGTTGAA+GGG	0.527662	6:+11095400	MsG0680030881.01.T01:CDS
AGCTATTGCTGTCAATAACA+TGG	0.628294	6:+11095201	MsG0680030881.01.T01:CDS
AGGTGAGAGAGGAAATGCTG+GGG	0.642079	6:+11095053	MsG0680030881.01.T01:CDS
AGTCATGAGGAAGGGTGTGT+TGG	0.428618	6:+11095097	MsG0680030881.01.T01:CDS
ATGGTTAAGAAGACTTTGAG+AGG	0.598226	6:+11095220	MsG0680030881.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAAAAGGGAATGAAG+TGG	+	Chr6:11095129-11095148	MsG0680030881.01.T01:CDS	30.0%
AAATGATGTTGAAGTTTGTG+AGG	+	Chr6:11095018-11095037	MsG0680030881.01.T01:CDS	30.0%
AATGATGTTGAAGTTTGTGA+GGG	+	Chr6:11095019-11095038	MsG0680030881.01.T01:CDS	30.0%
CCGTCAAATATTTACCTTTA+AGG	-	Chr6:11095384-11095403	None:intergenic	30.0%
GTTTATTACTATGTGTGAGT+TGG	+	Chr6:11095315-11095334	MsG0680030881.01.T01:CDS	30.0%
AGCTATTGCTGTCAATAACA+TGG	+	Chr6:11095201-11095220	MsG0680030881.01.T01:CDS	35.0%
ATGGTTAAGAAGACTTTGAG+AGG	+	Chr6:11095220-11095239	MsG0680030881.01.T01:CDS	35.0%
CTAGAGATGATTTGAAAAGG+AGG	+	Chr6:11095164-11095183	MsG0680030881.01.T01:CDS	35.0%
TTAAGGTCATCAAAAGAAGG+TGG	-	Chr6:11095367-11095386	None:intergenic	35.0%
TTGGTTTCAAGACATGGATT+AGG	+	Chr6:11095334-11095353	MsG0680030881.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	11094935	11095441	11094935	ID=MsG0680030881.01;Name=MsG0680030881.01
Chr6	mRNA	11094935	11095441	11094935	ID=MsG0680030881.01.T01;Parent=MsG0680030881.01;Name=MsG0680030881.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|168
Chr6	exon	11094935	11095441	11094935	ID=MsG0680030881.01.T01:exon:8201;Parent=MsG0680030881.01.T01
Chr6	CDS	11094935	11095441	11094935	ID=MsG0680030881.01.T01:cds;Parent=MsG0680030881.01.T01

Gene Sequence

>MsG0680030881.01.T01

ATGATAAGTTGTAGATATTGTGATGACTACTTGTCTCGCGGGGTTTTTGCGTTTTTACGTCACTTGGCTGGAACTGGAACTGAAAATGATGTTGAAGTTTGTGAGGGTGTTGGTGATGAGGTGAGAGAGGAAATGCTGGGGATTTTTAGTGATTTGCAAGAGAGTCATGAGGAAGGGTGTGTTGGAGTTGGTGAAAAAAGAAAAGGGAATGAAGTGGCTGTTGGGAGTTCTAGAGATGATTTGAAAAGGAGGAGAGTTGGCTCGCAAGCTATTGCTGTCAATAACATGGTTAAGAAGACTTTGAGAGGGGAAGCTTCTCGAGCGGTTGCAAGGTTTTTCTACAACAATGACATACCGCTCGATGCGGTAAAGAGTGATGAGTTTATTACTATGTGTGAGTTGGTTTCAAGACATGGATTAGGATTTGTGCCACCTTCTTTTGATGACCTTAAAGGTAAATATTTGACGGAAGAAGTTAAGTTGAAGGGAAGCTTTGGAAGAACATAG

Protein sequence

>MsG0680030881.01.T01

MISCRYCDDYLSRGVFAFLRHLAGTGTENDVEVCEGVGDEVREEMLGIFSDLQESHEEGCVGVGEKRKGNEVAVGSSRDDLKRRRVGSQAIAVNNMVKKTLRGEASRAVARFFYNNDIPLDAVKSDEFITMCELVSRHGLGFVPPSFDDLKGKYLTEEVKLKGSFGRT*