AlfalfaGEDB | MsG0780038598.01

M. sativa cultivar ZhongmuNo.1 / MsG0780038598.01

KEGG: -
GO: GO:0004861 GO:0005634 GO:0007050
PFAM: PF02234

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038598.01.T01	KEH22814.1	91.827	208	17	0	1	208	1	208	3.69E-139	397

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038598.01.T01	Q9FKB5	47.577	227	96	9	1	209	1	222	8.64E-51	166

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038598.01.T01	A0A072TZ90	91.827	208	17	0	1	208	1	208	1.76e-139	397

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000218.01	MsG0780038598.01	0.801327	9.487997e-49	4.518435e-46
MsG0180003767.01	MsG0780038598.01	0.863345	2.659877e-64	8.038344e-61
MsG0180004605.01	MsG0780038598.01	0.834392	3.077315e-56	3.646994e-53
MsG0280010604.01	MsG0780038598.01	0.808409	3.141676e-50	1.794977e-47
MsG0280011027.01	MsG0780038598.01	-0.802879	4.550566e-49	2.254237e-46
MsG0280011059.01	MsG0780038598.01	0.831851	1.320341e-55	1.450646e-52
MsG0280011272.01	MsG0780038598.01	0.800221	1.595408e-48	7.387836e-46
MsG0380013794.01	MsG0780038598.01	0.805551	1.263879e-49	6.705806e-47
MsG0680031333.01	MsG0780038598.01	0.805435	1.336613e-49	7.070863e-47
MsG0680034230.01	MsG0780038598.01	-0.808110	3.638396e-50	2.062422e-47
MsG0680035498.01	MsG0780038598.01	-0.816024	6.844046e-52	4.795104e-49
MsG0480019689.01	MsG0780038598.01	0.852194	5.417236e-61	1.123242e-57
MsG0480020935.01	MsG0780038598.01	0.861892	7.454798e-64	2.141577e-60
MsG0480022491.01	MsG0780038598.01	0.831933	1.260304e-55	1.388019e-52
MsG0480023400.01	MsG0780038598.01	0.805751	1.147281e-49	6.119283e-47
MsG0480023936.01	MsG0780038598.01	0.847531	1.090041e-59	1.943492e-56
MsG0580024790.01	MsG0780038598.01	0.849932	2.353809e-60	4.535207e-57
MsG0580024928.01	MsG0780038598.01	0.804332	2.272837e-49	1.168665e-46
MsG0580025182.01	MsG0780038598.01	0.815753	7.866554e-52	5.470902e-49
MsG0580025357.01	MsG0780038598.01	0.804801	1.814839e-49	9.445686e-47
MsG0580025369.01	MsG0780038598.01	0.826325	2.886753e-54	2.698503e-51
MsG0580025407.01	MsG0780038598.01	0.875698	2.510049e-68	1.183529e-64
MsG0580025561.01	MsG0780038598.01	0.813962	1.962646e-51	1.300005e-48
MsG0380015066.01	MsG0780038598.01	0.815769	7.800720e-52	5.427671e-49
MsG0380016191.01	MsG0780038598.01	0.838166	3.379262e-57	4.488399e-54
MsG0380016347.01	MsG0780038598.01	0.842303	2.807223e-58	4.238482e-55
MsG0380016671.01	MsG0780038598.01	-0.812609	3.889515e-51	2.484172e-48
MsG0380017094.01	MsG0780038598.01	0.839035	2.015585e-57	2.749143e-54
MsG0480018091.01	MsG0780038598.01	0.800780	1.227200e-48	5.763780e-46
MsG0580027103.01	MsG0780038598.01	-0.801130	1.041015e-48	4.933244e-46
MsG0580028232.01	MsG0780038598.01	0.826943	2.055272e-54	1.955720e-51
MsG0580028428.01	MsG0780038598.01	-0.802672	5.020511e-49	2.473941e-46
MsG0580028613.01	MsG0780038598.01	0.802817	4.686099e-49	2.317879e-46
MsG0680030356.01	MsG0780038598.01	0.806542	7.819211e-50	4.255472e-47
MsG0280006526.01	MsG0780038598.01	0.824127	9.553441e-54	8.387152e-51
MsG0280006711.01	MsG0780038598.01	0.846754	1.780227e-59	3.095815e-56
MsG0280008304.01	MsG0780038598.01	0.819507	1.119936e-52	8.635077e-50
MsG0280008307.01	MsG0780038598.01	0.808627	2.822611e-50	1.621783e-47
MsG0280008660.01	MsG0780038598.01	0.812556	3.994506e-51	2.547735e-48
MsG0280010532.01	MsG0780038598.01	0.805246	1.464166e-49	7.707908e-47
MsG0780038309.01	MsG0780038598.01	0.816602	5.082441e-52	3.617443e-49
MsG0780038598.01	MsG0780038744.01	-0.803514	3.361871e-49	1.692782e-46
MsG0780038598.01	MsG0780039830.01	0.802545	5.332669e-49	2.619304e-46
MsG0780038598.01	MsG0780039867.01	0.827938	1.186447e-54	1.162212e-51
MsG0780038598.01	MsG0780040576.01	0.815588	8.561378e-52	5.926951e-49
MsG0780038598.01	MsG0780040834.01	-0.806188	9.284569e-50	5.007632e-47
MsG0780038598.01	MsG0780041468.01	-0.821226	4.517932e-53	3.654149e-50
MsG0780038598.01	MsG0880043937.01	-0.800513	1.391699e-48	6.492347e-46
MsG0780038598.01	MsG0880044611.01	0.852533	4.338139e-61	9.091624e-58
MsG0780038598.01	MsG0880045548.01	0.844889	5.715155e-59	9.358158e-56
MsG0780038598.01	MsG0880046289.01	0.811129	8.168376e-51	5.015301e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038598.01.T01	MTR_7g057920	91.827	208	17	0	1	208	1	208	4.47e-143	397
MsG0780038598.01.T01	MTR_7g058390	90.865	208	18	1	1	208	1	207	3.58e-141	392
MsG0780038598.01.T01	MTR_1g072860	33.745	243	106	10	1	209	1	222	2.17e-23	93.6
MsG0780038598.01.T01	MTR_5g017600	30.808	198	105	8	25	209	5	183	6.73e-17	75.5
MsG0780038598.01.T01	MTR_4g086450	63.158	38	14	0	168	205	113	150	7.36e-12	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780038598.01.T01	AT5G48820	47.577	227	96	9	1	209	1	222	8.81e-52	166
MsG0780038598.01.T01	AT5G48820	44.262	244	97	9	1	209	1	240	4.45e-49	160
MsG0780038598.01.T01	AT2G32710	40.526	190	82	5	47	207	97	284	1.11e-31	117
MsG0780038598.01.T01	AT2G32710	39.896	193	82	5	47	207	97	287	1.80e-31	116
MsG0780038598.01.T01	AT3G24810	34.348	230	89	8	1	209	1	189	8.98e-29	106
MsG0780038598.01.T01	AT1G49620	55.319	47	21	0	163	209	149	195	9.18e-14	67.4
MsG0780038598.01.T01	AT1G49620	55.319	47	21	0	163	209	154	200	9.48e-14	67.4

Find 71 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTGATTCGGCGGAGATTTC+TGG	0.134094	7:+49563451	None:intergenic
GCAGCAACAAGCATTATTTA+TGG	0.177822	7:-49560756	MsG0780038598.01.T01:CDS
GGCGACATCGCCGGTGGTTT+TGG	0.265337	7:+49563545	None:intergenic
CTGCTCCCGTTGGAAATTCT+AGG	0.303380	7:-49563350	MsG0780038598.01.T01:CDS
CTTTGTCTTGTGGTTGAACC+AGG	0.312665	7:+49560863	None:intergenic
GCACACCTTGTAGTTTAATC+AGG	0.331031	7:-49560907	MsG0780038598.01.T01:CDS
TTCGCTGTTGAAGGTTCTTT+TGG	0.335129	7:-49563255	MsG0780038598.01.T01:CDS
TTTCTGGAGAGCAAGGGTTT+TGG	0.359471	7:+49563467	None:intergenic
GATGGTGATTTCGCTGTTGA+AGG	0.380464	7:-49563264	MsG0780038598.01.T01:CDS
TTCTAGGCTTCGTGAATGTT+CGG	0.405692	7:-49563334	MsG0780038598.01.T01:CDS
GAAAATTTCGCAGAGATTGA+TGG	0.418505	7:-49563231	MsG0780038598.01.T01:CDS
GGCTGGTCCTAGGGAAGTAC+AGG	0.433584	7:+49560487	None:intergenic
CCTTACGGAGGCGGCGGCTA+CGG	0.433971	7:+49563403	None:intergenic
GGAGGCGGCGGCTACGGAGC+TGG	0.441102	7:+49563409	None:intergenic
CGATGTCGCCGCCGTAATCA+TGG	0.456695	7:-49563532	MsG0780038598.01.T01:CDS
TTGCGAGGTGGAAGCGGCGG+AGG	0.461128	7:+49563378	None:intergenic
CAGAGATTGATGGTAGAGAT+AGG	0.461294	7:-49563221	MsG0780038598.01.T01:intron
ACACCACCGCCGTTGGTGTC+CGG	0.463024	7:-49563497	MsG0780038598.01.T01:CDS
CCAGGGGTATGAATGATACT+TGG	0.467708	7:+49560881	None:intergenic
TCATCCACTTCATAAGTTGT+TGG	0.469285	7:+49560800	None:intergenic
CCGTAGCCGCCGCCTCCGTA+AGG	0.481312	7:-49563403	MsG0780038598.01.T01:CDS
GCGGAGGAACCTTACGGAGG+CGG	0.492682	7:+49563394	None:intergenic
TTGTTGCTGCTTCTCTGCCA+AGG	0.495579	7:+49560769	None:intergenic
AGACGGTGATTCCATGATTA+CGG	0.496172	7:+49563521	None:intergenic
GTGTCCTTGCGAGGTGGAAG+CGG	0.498314	7:+49563372	None:intergenic
TTGTCTTGTGGTTGAACCAG+GGG	0.501803	7:+49560865	None:intergenic
GAAGAGGAATCAGAGTGATT+CGG	0.505537	7:+49563438	None:intergenic
GGGACCCATTCGTATCGTCC+TGG	0.507892	7:+49560508	None:intergenic
TACTCCAACAACTTATGAAG+TGG	0.508794	7:-49560804	MsG0780038598.01.T01:CDS
GCGGCTACGGAGCTGGAGGA+AGG	0.510998	7:+49563416	None:intergenic
GAGGAACCTTACGGAGGCGG+CGG	0.520521	7:+49563397	None:intergenic
GAAGCGGCGGAGGAACCTTA+CGG	0.521844	7:+49563388	None:intergenic
TGTCCGGACACCAACGGCGG+TGG	0.531487	7:+49563494	None:intergenic
CGAAGCCTAGAATTTCCAAC+GGG	0.536187	7:+49563345	None:intergenic
CGCAAGGACACTGCTCCCGT+TGG	0.536478	7:-49563360	MsG0780038598.01.T01:CDS
CCAAGTATCATTCATACCCC+TGG	0.539760	7:-49560881	MsG0780038598.01.T01:CDS
GCGGAGATTTCTGGAGAGCA+AGG	0.540908	7:+49563460	None:intergenic
CGGAGATTTCTGGAGAGCAA+GGG	0.542546	7:+49563461	None:intergenic
TCCGCCGCTTCCACCTCGCA+AGG	0.544264	7:-49563376	MsG0780038598.01.T01:CDS
CACACCTTGTAGTTTAATCA+GGG	0.545905	7:-49560906	MsG0780038598.01.T01:CDS
TTTGTCTTGTGGTTGAACCA+GGG	0.547862	7:+49560864	None:intergenic
GATTACGGCGGCGACATCGC+CGG	0.550115	7:+49563536	None:intergenic
ACGGAGCTGGAGGAAGGAAG+AGG	0.555343	7:+49563422	None:intergenic
GGCACGTGTCCGGACACCAA+CGG	0.561914	7:+49563488	None:intergenic
GGACCCATTCGTATCGTCCT+GGG	0.567033	7:+49560509	None:intergenic
CATTCGTATCGTCCTGGGAG+AGG	0.568346	7:+49560514	None:intergenic
GGCGGCGGCTACGGAGCTGG+AGG	0.568674	7:+49563412	None:intergenic
TCTCCCAGGACGATACGAAT+GGG	0.569573	7:-49560512	MsG0780038598.01.T01:CDS
AGTGGATGAATTCTTTGCCT+TGG	0.571053	7:-49560786	MsG0780038598.01.T01:CDS
ATGGGTCCCTGTACTTCCCT+AGG	0.571550	7:-49560494	None:intergenic
CTCTCCCAGGACGATACGAA+TGG	0.575529	7:-49560513	MsG0780038598.01.T01:CDS
TCCTTGCGAGGTGGAAGCGG+CGG	0.577776	7:+49563375	None:intergenic
ACGGGAGCAGTGTCCTTGCG+AGG	0.590790	7:+49563363	None:intergenic
GTGAATGATGTACCTCTCCC+AGG	0.597885	7:-49560526	MsG0780038598.01.T01:CDS
ATTCAATGGGTAAATACATG+AGG	0.605964	7:-49563572	None:intergenic
GCGGTTCGTCCTTTGTCTTG+TGG	0.610884	7:+49560853	None:intergenic
CCGTCTCACACCACCGCCGT+TGG	0.622789	7:-49563504	MsG0780038598.01.T01:CDS
TACGGCGGCGACATCGCCGG+TGG	0.623097	7:+49563539	None:intergenic
ATGAGGAAATCCAAAACCAC+CGG	0.623986	7:-49563555	MsG0780038598.01.T01:CDS
GCATGTGTTCTTGAATAGTG+CGG	0.632168	7:+49560834	None:intergenic
GGATCCCTGATTAAACTACA+AGG	0.636161	7:+49560902	None:intergenic
CCAACGGCGGTGGTGTGAGA+CGG	0.637228	7:+49563504	None:intergenic
ACGAAGCCTAGAATTTCCAA+CGG	0.645481	7:+49563344	None:intergenic
CTGGTTCAACCACAAGACAA+AGG	0.647709	7:-49560862	MsG0780038598.01.T01:CDS
GAGGAATCAGAGTGATTCGG+CGG	0.652108	7:+49563441	None:intergenic
GGAGCAGTGTCCTTGCGAGG+TGG	0.670925	7:+49563366	None:intergenic
GCGGCGGAGGAACCTTACGG+AGG	0.674543	7:+49563391	None:intergenic
ACGTGTCCGGACACCAACGG+CGG	0.703244	7:+49563491	None:intergenic
GATGAGAATGAGAATCGCGA+TGG	0.711593	7:-49563282	MsG0780038598.01.T01:CDS
GCTGGTCCTAGGGAAGTACA+GGG	0.716168	7:+49560488	None:intergenic
CGGTGATTCCATGATTACGG+CGG	0.758790	7:+49563524	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATTAGTGAAAAAATAAAA+TGG	+	Chr7:49562966-49562985	None:intergenic	10.0%
!!	AATTCTTAAAATTAAAACAT+GGG	+	Chr7:49563367-49563386	None:intergenic	10.0%
!!	CAAAAAAATTACTATTAAAA+TGG	+	Chr7:49563111-49563130	None:intergenic	10.0%
!!!	ATTAGAATTTTTCAAATAAT+AGG	-	Chr7:49561195-49561214	MsG0780038598.01.T01:intron	10.0%
!!!	TGTAAAAAATTGTTTTTTAA+TGG	+	Chr7:49561246-49561265	None:intergenic	10.0%
!!!	TTAAAAAACAATTTTTTACA+TGG	-	Chr7:49561246-49561265	MsG0780038598.01.T01:intron	10.0%
!!!	TTAGAATTTTTCAAATAATA+GGG	-	Chr7:49561196-49561215	MsG0780038598.01.T01:intron	10.0%
!!	ATTCTTAAAATTAAAACATG+GGG	+	Chr7:49563366-49563385	None:intergenic	15.0%
!!	GAATTCTTAAAATTAAAACA+TGG	+	Chr7:49563368-49563387	None:intergenic	15.0%
!!	TAGGAAAAAATTAAAAGTAA+TGG	+	Chr7:49563065-49563084	None:intergenic	15.0%
!!!	ATTTCTTTTTTTTTATTGTG+TGG	-	Chr7:49561424-49561443	MsG0780038598.01.T01:intron	15.0%
!!!	ATTTTTTAGAAATAACACAA+AGG	+	Chr7:49560939-49560958	None:intergenic	15.0%
!!!	TTGCTTTTTATTTTTTGTTT+TGG	-	Chr7:49563429-49563448	MsG0780038598.01.T01:CDS	15.0%
!!!	TTTTTTAGAAATAACACAAA+GGG	+	Chr7:49560938-49560957	None:intergenic	15.0%
!!	AAAACATTAAACGAAAATCT+AGG	+	Chr7:49561459-49561478	None:intergenic	20.0%
!!	AAACATTAAACGAAAATCTA+GGG	+	Chr7:49561458-49561477	None:intergenic	20.0%
!!	ACAAAATGGAAAATAATTTC+TGG	-	Chr7:49561834-49561853	MsG0780038598.01.T01:intron	20.0%
!!	CAAAATGGAAAATAATTTCT+GGG	-	Chr7:49561835-49561854	MsG0780038598.01.T01:intron	20.0%
!!	TAGTAAAAATCATTTCATCT+TGG	+	Chr7:49562671-49562690	None:intergenic	20.0%
!!!	ATGTTTCTATTTTTGTATGA+AGG	-	Chr7:49561045-49561064	MsG0780038598.01.T01:intron	20.0%
!!!	CTACTTTTAAAGTAGTTATT+GGG	-	Chr7:49561887-49561906	MsG0780038598.01.T01:intron	20.0%
!!!	GAAATTATTTTCCATTTTGT+TGG	+	Chr7:49561834-49561853	None:intergenic	20.0%
!!!	GTATAATTACTCTTCTATTT+TGG	-	Chr7:49560863-49560882	MsG0780038598.01.T01:CDS	20.0%
!!!	TACTTTTAAAGTAGTTATTG+GGG	-	Chr7:49561888-49561907	MsG0780038598.01.T01:intron	20.0%
!!!	TGGTTTTTAGAATTTTCATT+TGG	-	Chr7:49561014-49561033	MsG0780038598.01.T01:intron	20.0%
!!!	TTTTTAGAAATAACACAAAG+GGG	+	Chr7:49560937-49560956	None:intergenic	20.0%
!	AAAAAAAAGCAACTTTGCAT+TGG	-	Chr7:49562121-49562140	MsG0780038598.01.T01:intron	25.0%
!	AAAAAATACAAGGAAAGAGA+TGG	+	Chr7:49562826-49562845	None:intergenic	25.0%
!	AAAAAGCTGAAGAAGTAAAA+AGG	+	Chr7:49561291-49561310	None:intergenic	25.0%
!	AAAATAACACAAAAAACGAG+TGG	+	Chr7:49562002-49562021	None:intergenic	25.0%
!	AAACACATCAAACTGAAAAT+AGG	+	Chr7:49562762-49562781	None:intergenic	25.0%
!	AACATTAAACGAAAATCTAG+GGG	+	Chr7:49561457-49561476	None:intergenic	25.0%
!	AATATATGACTAATTGAGGA+AGG	+	Chr7:49562255-49562274	None:intergenic	25.0%
!	AATTTAATCCTCAAAACTGT+AGG	+	Chr7:49563403-49563422	None:intergenic	25.0%
!	ATACAAACAACATAACACAT+TGG	+	Chr7:49563493-49563512	None:intergenic	25.0%
!	ATTTAATCCTCAAAACTGTA+GGG	+	Chr7:49563402-49563421	None:intergenic	25.0%
!	CAAGCAACAAAAAAAATACA+AGG	+	Chr7:49562836-49562855	None:intergenic	25.0%
!	CAGAATCTTAAAATCCAAAA+GGG	+	Chr7:49562296-49562315	None:intergenic	25.0%
!	GGTTAATATATGACTAATTG+AGG	+	Chr7:49562259-49562278	None:intergenic	25.0%
!	TCAGAATCTTAAAATCCAAA+AGG	+	Chr7:49562297-49562316	None:intergenic	25.0%
!	TGATTACATAACCAACAAAA+TGG	-	Chr7:49561820-49561839	MsG0780038598.01.T01:intron	25.0%
!!	CATTATAGAGTCATATTTTG+AGG	-	Chr7:49561963-49561982	MsG0780038598.01.T01:intron	25.0%
!!	CCAATAACTACTTTAAAAGT+AGG	+	Chr7:49561889-49561908	None:intergenic	25.0%
!!	GACAAATCATATTTTACGTT+AGG	+	Chr7:49562498-49562517	None:intergenic	25.0%
!!	TTTAACTTTCATGTGATTGT+TGG	-	Chr7:49561367-49561386	MsG0780038598.01.T01:intron	25.0%
!!!	ACTTTTAAAGTAGTTATTGG+GGG	-	Chr7:49561889-49561908	MsG0780038598.01.T01:intron	25.0%
!!!	ATGCAAAGTTGCTTTTTTTT+TGG	+	Chr7:49562121-49562140	None:intergenic	25.0%
!!!	CCTACTTTTAAAGTAGTTAT+TGG	-	Chr7:49561886-49561905	MsG0780038598.01.T01:intron	25.0%
!!!	TGCAAAGTTGCTTTTTTTTT+GGG	+	Chr7:49562120-49562139	None:intergenic	25.0%
!!!	TTATGTTGTTTGTATTTTGC+AGG	-	Chr7:49563498-49563517	MsG0780038598.01.T01:CDS	25.0%
!!!	TTTTTTACATGGACATACAA+AGG	-	Chr7:49561257-49561276	MsG0780038598.01.T01:intron	25.0%
	AAAAGGGATTCTAATATCTC+AGG	+	Chr7:49562280-49562299	None:intergenic	30.0%
	AACGAGTGGAAATTACAAAA+TGG	-	Chr7:49562045-49562064	MsG0780038598.01.T01:intron	30.0%
	ATCTCTCAAGAGTTAATCTA+AGG	+	Chr7:49562323-49562342	None:intergenic	30.0%
	ATGTGTTTCAGATTTCTGTT+TGG	-	Chr7:49562774-49562793	MsG0780038598.01.T01:intron	30.0%
	CACTCAAAAACTCTTCAAAT+TGG	+	Chr7:49562931-49562950	None:intergenic	30.0%
	CTATTAAAATGGCTTAGCAA+AGG	+	Chr7:49563100-49563119	None:intergenic	30.0%
	CTTCTTACATTAATGAGTTG+TGG	-	Chr7:49561744-49561763	MsG0780038598.01.T01:intron	30.0%
	GAAAAGTAACTGGCATTTAT+TGG	+	Chr7:49562883-49562902	None:intergenic	30.0%
	GAAATTCATAGCAGAGAATA+GGG	-	Chr7:49561073-49561092	MsG0780038598.01.T01:intron	30.0%
	GAATGTTCGGATGAAAAATT+GGG	-	Chr7:49560741-49560760	MsG0780038598.01.T01:intron	30.0%
	GCAAAGGAATCTAATAGAAT+AGG	+	Chr7:49563084-49563103	None:intergenic	30.0%
	GTCATAGAAAATGCAAATGT+TGG	+	Chr7:49563040-49563059	None:intergenic	30.0%
	TGAAATTCATAGCAGAGAAT+AGG	-	Chr7:49561072-49561091	MsG0780038598.01.T01:intron	30.0%
	TGAATGTTCGGATGAAAAAT+TGG	-	Chr7:49560740-49560759	MsG0780038598.01.T01:intron	30.0%
	TTTAATCCTCAAAACTGTAG+GGG	+	Chr7:49563401-49563420	None:intergenic	30.0%
	TTTGTCCAATCTTCATTAAC+CGG	-	Chr7:49562512-49562531	MsG0780038598.01.T01:intron	30.0%
!	ATTTTCCACTCGTCTTTTTA+AGG	-	Chr7:49562017-49562036	MsG0780038598.01.T01:intron	30.0%
!	GTATAGTTCTGTTAGTACAA+AGG	-	Chr7:49561510-49561529	MsG0780038598.01.T01:intron	30.0%
!	TGAGATATTAGAATCCCTTT+TGG	-	Chr7:49562279-49562298	MsG0780038598.01.T01:intron	30.0%
!	TTTTCATGAGCGAATATTTC+TGG	-	Chr7:49562565-49562584	MsG0780038598.01.T01:intron	30.0%
!	TTTTCCACTCGTCTTTTTAA+GGG	-	Chr7:49562018-49562037	MsG0780038598.01.T01:intron	30.0%
!!	GTTGCATATTAGTGTTGATT+TGG	-	Chr7:49560994-49561013	MsG0780038598.01.T01:intron	30.0%
!!	TTTTTAAGGGAAAAAACGAG+TGG	-	Chr7:49562031-49562050	MsG0780038598.01.T01:intron	30.0%
!!!	GTATTTTTTATCTGCTGCAT+TGG	-	Chr7:49561629-49561648	MsG0780038598.01.T01:intron	30.0%
	AGGTGTGTCATATACATACA+TGG	-	Chr7:49562734-49562753	MsG0780038598.01.T01:intron	35.0%
	ATCCCAGATGAATAGTAAAC+AGG	+	Chr7:49562376-49562395	None:intergenic	35.0%
	CACACCTTGTAGTTTAATCA+GGG	-	Chr7:49563156-49563175	MsG0780038598.01.T01:intron	35.0%
	CATTCAAGCTGTCAGTAAAT+TGG	+	Chr7:49562540-49562559	None:intergenic	35.0%
	GAAAATTTCGCAGAGATTGA+TGG	-	Chr7:49560831-49560850	MsG0780038598.01.T01:CDS	35.0%
	GCAGCAACAAGCATTATTTA+TGG	-	Chr7:49563306-49563325	MsG0780038598.01.T01:CDS	35.0%
	GGTGTGTCATATACATACAT+GGG	-	Chr7:49562735-49562754	MsG0780038598.01.T01:intron	35.0%
	GTGTGTCATATACATACATG+GGG	-	Chr7:49562736-49562755	MsG0780038598.01.T01:intron	35.0%
	TACTCCAACAACTTATGAAG+TGG	-	Chr7:49563258-49563277	MsG0780038598.01.T01:CDS	35.0%
	TCATCCACTTCATAAGTTGT+TGG	+	Chr7:49563265-49563284	None:intergenic	35.0%
	TCCCAGATGAATAGTAAACA+GGG	+	Chr7:49562375-49562394	None:intergenic	35.0%
	TGCAGTGAATGAGAAAGATA+TGG	-	Chr7:49562800-49562819	MsG0780038598.01.T01:intron	35.0%
!	TAACTTCTGTGACTTGTGAT+AGG	-	Chr7:49561547-49561566	MsG0780038598.01.T01:intron	35.0%
!	TCCTACTCTAGAAAAGTAAC+TGG	+	Chr7:49562893-49562912	None:intergenic	35.0%
!	TTTTCCCTTAAAAAGACGAG+TGG	+	Chr7:49562025-49562044	None:intergenic	35.0%
	AACACGACACATGAGAGTTA+TGG	+	Chr7:49562709-49562728	None:intergenic	40.0%
	ACGAAGCCTAGAATTTCCAA+CGG	+	Chr7:49560721-49560740	None:intergenic	40.0%
	AGACGGTGATTCCATGATTA+CGG	+	Chr7:49560544-49560563	None:intergenic	40.0%
	AGCTGTCAGTAAATTGGAAC+CGG	+	Chr7:49562534-49562553	None:intergenic	40.0%
	AGGAAGGCAAATGCTAACTT+GGG	+	Chr7:49562239-49562258	None:intergenic	40.0%
	AGTGGATGAATTCTTTGCCT+TGG	-	Chr7:49563276-49563295	MsG0780038598.01.T01:CDS	40.0%
	ATAGTAAACAGGGGCAATCA+AGG	+	Chr7:49562365-49562384	None:intergenic	40.0%
	ATGAGGAAATCCAAAACCAC+CGG	-	Chr7:49560507-49560526	MsG0780038598.01.T01:CDS	40.0%
	CATTCACTTGTCGAGTAAGT+TGG	-	Chr7:49562419-49562438	MsG0780038598.01.T01:intron	40.0%
	CATTTCATCTTGGCTGCTTA+TGG	+	Chr7:49562661-49562680	None:intergenic	40.0%
	CCCAGATGAATAGTAAACAG+GGG	+	Chr7:49562374-49562393	None:intergenic	40.0%
	CCCCTGTTTACTATTCATCT+GGG	-	Chr7:49562371-49562390	MsG0780038598.01.T01:intron	40.0%
	GAAGAGGAATCAGAGTGATT+CGG	+	Chr7:49560627-49560646	None:intergenic	40.0%
	GCACACCTTGTAGTTTAATC+AGG	-	Chr7:49563155-49563174	MsG0780038598.01.T01:intron	40.0%
	GCATGTGTTCTTGAATAGTG+CGG	+	Chr7:49563231-49563250	None:intergenic	40.0%
	GGATCCCTGATTAAACTACA+AGG	+	Chr7:49563163-49563182	None:intergenic	40.0%
	GGTACCACTGAATGAAAGAT+TGG	-	Chr7:49562440-49562459	MsG0780038598.01.T01:intron	40.0%
	GTGGTACCAATAATGCAGAA+GGG	-	Chr7:49561763-49561782	MsG0780038598.01.T01:intron	40.0%
	TCAACACCCTTCTGCATTAT+TGG	+	Chr7:49561772-49561791	None:intergenic	40.0%
	TGAGCATGAGCGAATATTTC+TGG	-	Chr7:49562595-49562614	MsG0780038598.01.T01:intron	40.0%
	TGGAACCGGTTAATGAAGAT+TGG	+	Chr7:49562520-49562539	None:intergenic	40.0%
	TGTGGTACCAATAATGCAGA+AGG	-	Chr7:49561762-49561781	MsG0780038598.01.T01:intron	40.0%
	TTCTAGGCTTCGTGAATGTT+CGG	-	Chr7:49560728-49560747	MsG0780038598.01.T01:intron	40.0%
	TTTGTCTTGTGGTTGAACCA+GGG	+	Chr7:49563201-49563220	None:intergenic	40.0%
!	CAGAGATTGATGGTAGAGAT+AGG	-	Chr7:49560841-49560860	MsG0780038598.01.T01:CDS	40.0%
!	TTCGCTGTTGAAGGTTCTTT+TGG	-	Chr7:49560807-49560826	MsG0780038598.01.T01:CDS	40.0%
!!	ATTCATCTGGGATTTTCTGC+AGG	-	Chr7:49562383-49562402	MsG0780038598.01.T01:intron	40.0%
!!	CATGTTAACTTGTGCCCTAA+GGG	-	Chr7:49562080-49562099	MsG0780038598.01.T01:intron	40.0%
!!	TCATGTTAACTTGTGCCCTA+AGG	-	Chr7:49562079-49562098	MsG0780038598.01.T01:intron	40.0%
!!!	GCCAGTTACTTTTCTAGAGT+AGG	-	Chr7:49562889-49562908	MsG0780038598.01.T01:intron	40.0%
	ACTGTGTGATAACTGCAGAC+AGG	+	Chr7:49562990-49563009	None:intergenic	45.0%
	AGGGCACAAGTTAACATGAG+AGG	+	Chr7:49562078-49562097	None:intergenic	45.0%
	ATCCTCAAAACTGTAGGGGT+TGG	+	Chr7:49563397-49563416	None:intergenic	45.0%
	CCAAGTATCATTCATACCCC+TGG	-	Chr7:49563181-49563200	MsG0780038598.01.T01:intron	45.0%
	CGAAGCCTAGAATTTCCAAC+GGG	+	Chr7:49560720-49560739	None:intergenic	45.0%
	CTCATGTGTCGTGTTAGCAA+AGG	-	Chr7:49562714-49562733	MsG0780038598.01.T01:intron	45.0%
	CTCCTTAACATGTGCCCTTA+GGG	+	Chr7:49562097-49562116	None:intergenic	45.0%
	CTGCAGTTATCACACAGTTC+TGG	-	Chr7:49562992-49563011	MsG0780038598.01.T01:intron	45.0%
	CTGGTTCAACCACAAGACAA+AGG	-	Chr7:49563200-49563219	MsG0780038598.01.T01:intron	45.0%
	CTTTGTCTTGTGGTTGAACC+AGG	+	Chr7:49563202-49563221	None:intergenic	45.0%
	GAGGAAGGCAAATGCTAACT+TGG	+	Chr7:49562240-49562259	None:intergenic	45.0%
	GATGAGAATGAGAATCGCGA+TGG	-	Chr7:49560780-49560799	MsG0780038598.01.T01:CDS	45.0%
	GATGGTGATTTCGCTGTTGA+AGG	-	Chr7:49560798-49560817	MsG0780038598.01.T01:CDS	45.0%
	GCCCCTGTTTACTATTCATC+TGG	-	Chr7:49562370-49562389	MsG0780038598.01.T01:intron	45.0%
	GCGTCCAATCTTTCATTCAG+TGG	+	Chr7:49562447-49562466	None:intergenic	45.0%
	TCCTTAACATGTGCCCTTGA+GGG	-	Chr7:49562213-49562232	MsG0780038598.01.T01:intron	45.0%
	TTCCTTAACATGTGCCCTTG+AGG	-	Chr7:49562212-49562231	MsG0780038598.01.T01:intron	45.0%
	TTGTCTTGTGGTTGAACCAG+GGG	+	Chr7:49563200-49563219	None:intergenic	45.0%
!	CCAGGGGTATGAATGATACT+TGG	+	Chr7:49563184-49563203	None:intergenic	45.0%
!!	ATCTGGGATTTTCTGCAGGT+AGG	-	Chr7:49562387-49562406	MsG0780038598.01.T01:intron	45.0%
!!	TCTGGGATTTTCTGCAGGTA+GGG	-	Chr7:49562388-49562407	MsG0780038598.01.T01:intron	45.0%
!!	TGTGATTGTTGGTAGCACTG+AGG	-	Chr7:49561488-49561507	MsG0780038598.01.T01:intron	45.0%
!!	TTTCTGGAGAGCAAGGGTTT+TGG	+	Chr7:49560598-49560617	None:intergenic	45.0%
	AATGCTAACTTGGGCCCTCA+AGG	+	Chr7:49562230-49562249	None:intergenic	50.0%
	ATGCTAACTTGGGCCCTCAA+GGG	+	Chr7:49562229-49562248	None:intergenic	50.0%
	CACATGAGAGTTATGGCTGC+TGG	+	Chr7:49562702-49562721	None:intergenic	50.0%
	CGGTGATTCCATGATTACGG+CGG	+	Chr7:49560541-49560560	None:intergenic	50.0%
	CTGCTCCCGTTGGAAATTCT+AGG	-	Chr7:49560712-49560731	MsG0780038598.01.T01:intron	50.0%
	GCTCCTTAACATGTGCCCTT+AGG	+	Chr7:49562098-49562117	None:intergenic	50.0%
	GTGAATGATGTACCTCTCCC+AGG	-	Chr7:49563536-49563555	MsG0780038598.01.T01:CDS	50.0%
	TCTCCCAGGACGATACGAAT+GGG	-	Chr7:49563550-49563569	MsG0780038598.01.T01:CDS	50.0%
!	AGTGATTCGGCGGAGATTTC+TGG	+	Chr7:49560614-49560633	None:intergenic	50.0%
!	CGGAGATTTCTGGAGAGCAA+GGG	+	Chr7:49560604-49560623	None:intergenic	50.0%
!	GAGGAATCAGAGTGATTCGG+CGG	+	Chr7:49560624-49560643	None:intergenic	50.0%
!	GTCCAACCCCTACAGTTTTG+AGG	-	Chr7:49563392-49563411	MsG0780038598.01.T01:CDS	50.0%
!	TGCCCTAAGGGCACATGTTA+AGG	-	Chr7:49562092-49562111	MsG0780038598.01.T01:intron	50.0%
!	TTGTTGCTGCTTCTCTGCCA+AGG	+	Chr7:49563296-49563315	None:intergenic	50.0%
	CATTCGTATCGTCCTGGGAG+AGG	+	Chr7:49563551-49563570	None:intergenic	55.0%
	CTCTCCCAGGACGATACGAA+TGG	-	Chr7:49563549-49563568	MsG0780038598.01.T01:CDS	55.0%
	GAGACAAGCCCTGACTCAGT+GGG	+	Chr7:49562861-49562880	None:intergenic	55.0%
	GCGGTTCGTCCTTTGTCTTG+TGG	+	Chr7:49563212-49563231	None:intergenic	55.0%
	GGACCCATTCGTATCGTCCT+GGG	+	Chr7:49563556-49563575	None:intergenic	55.0%
	TGCTTGAGCCCACTGAGTCA+GGG	-	Chr7:49562850-49562869	MsG0780038598.01.T01:intron	55.0%
	TTGCTTGAGCCCACTGAGTC+AGG	-	Chr7:49562849-49562868	MsG0780038598.01.T01:intron	55.0%
!	GCCCTCAAGGGCACATGTTA+AGG	+	Chr7:49562217-49562236	None:intergenic	55.0%
!	GCGGAGATTTCTGGAGAGCA+AGG	+	Chr7:49560605-49560624	None:intergenic	55.0%
!!	CAAGGGTTTTGGCACGTGTC+CGG	+	Chr7:49560587-49560606	None:intergenic	55.0%
	ACGGAGCTGGAGGAAGGAAG+AGG	+	Chr7:49560643-49560662	None:intergenic	60.0%
	CGATGTCGCCGCCGTAATCA+TGG	-	Chr7:49560530-49560549	MsG0780038598.01.T01:CDS	60.0%
	GAAGCGGCGGAGGAACCTTA+CGG	+	Chr7:49560677-49560696	None:intergenic	60.0%
	GGAGACAAGCCCTGACTCAG+TGG	+	Chr7:49562862-49562881	None:intergenic	60.0%
	GGGACCCATTCGTATCGTCC+TGG	+	Chr7:49563557-49563576	None:intergenic	60.0%
	GTGTCCTTGCGAGGTGGAAG+CGG	+	Chr7:49560693-49560712	None:intergenic	60.0%
	ACGGGAGCAGTGTCCTTGCG+AGG	+	Chr7:49560702-49560721	None:intergenic	65.0%
	ACGTGTCCGGACACCAACGG+CGG	+	Chr7:49560574-49560593	None:intergenic	65.0%
	CCAACGGCGGTGGTGTGAGA+CGG	+	Chr7:49560561-49560580	None:intergenic	65.0%
	CGCAAGGACACTGCTCCCGT+TGG	-	Chr7:49560702-49560721	MsG0780038598.01.T01:intron	65.0%
	GAGGAACCTTACGGAGGCGG+CGG	+	Chr7:49560668-49560687	None:intergenic	65.0%
	GATTACGGCGGCGACATCGC+CGG	+	Chr7:49560529-49560548	None:intergenic	65.0%
	GCGGAGGAACCTTACGGAGG+CGG	+	Chr7:49560671-49560690	None:intergenic	65.0%
	GGAGCAGTGTCCTTGCGAGG+TGG	+	Chr7:49560699-49560718	None:intergenic	65.0%
	GGCACGTGTCCGGACACCAA+CGG	+	Chr7:49560577-49560596	None:intergenic	65.0%
	TCCTTGCGAGGTGGAAGCGG+CGG	+	Chr7:49560690-49560709	None:intergenic	65.0%
!	ACACCACCGCCGTTGGTGTC+CGG	-	Chr7:49560565-49560584	MsG0780038598.01.T01:intron	65.0%
!	GGCGACATCGCCGGTGGTTT+TGG	+	Chr7:49560520-49560539	None:intergenic	65.0%
	CCGTCTCACACCACCGCCGT+TGG	-	Chr7:49560558-49560577	MsG0780038598.01.T01:intron	70.0%
	CCTTACGGAGGCGGCGGCTA+CGG	+	Chr7:49560662-49560681	None:intergenic	70.0%
	GCGGCGGAGGAACCTTACGG+AGG	+	Chr7:49560674-49560693	None:intergenic	70.0%
	GCGGCTACGGAGCTGGAGGA+AGG	+	Chr7:49560649-49560668	None:intergenic	70.0%
	TCCGCCGCTTCCACCTCGCA+AGG	-	Chr7:49560686-49560705	MsG0780038598.01.T01:intron	70.0%
	TGTCCGGACACCAACGGCGG+TGG	+	Chr7:49560571-49560590	None:intergenic	70.0%
	TTGCGAGGTGGAAGCGGCGG+AGG	+	Chr7:49560687-49560706	None:intergenic	70.0%
	CCGTAGCCGCCGCCTCCGTA+AGG	-	Chr7:49560659-49560678	MsG0780038598.01.T01:intron	75.0%
	TACGGCGGCGACATCGCCGG+TGG	+	Chr7:49560526-49560545	None:intergenic	75.0%
!	GGAGGCGGCGGCTACGGAGC+TGG	+	Chr7:49560656-49560675	None:intergenic	80.0%
!	GGCGGCGGCTACGGAGCTGG+AGG	+	Chr7:49560653-49560672	None:intergenic	80.0%

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	49560495	49563589	49560495	ID=MsG0780038598.01;Name=MsG0780038598.01
Chr7	mRNA	49560495	49563589	49560495	ID=MsG0780038598.01.T01;Parent=MsG0780038598.01;Name=MsG0780038598.01.T01;_AED=0.42;_eAED=0.42;_QI=0\|0\|0\|1\|1\|1\|3\|0\|209
Chr7	exon	49563222	49563589	49563222	ID=MsG0780038598.01.T01:exon:6691;Parent=MsG0780038598.01.T01
Chr7	exon	49560752	49560943	49560752	ID=MsG0780038598.01.T01:exon:6690;Parent=MsG0780038598.01.T01
Chr7	exon	49560495	49560564	49560495	ID=MsG0780038598.01.T01:exon:6689;Parent=MsG0780038598.01.T01
Chr7	CDS	49563222	49563589	49563222	ID=MsG0780038598.01.T01:cds;Parent=MsG0780038598.01.T01
Chr7	CDS	49560752	49560943	49560752	ID=MsG0780038598.01.T01:cds;Parent=MsG0780038598.01.T01
Chr7	CDS	49560495	49560564	49560495	ID=MsG0780038598.01.T01:cds;Parent=MsG0780038598.01.T01

Gene Sequence

>MsG0780038598.01.T01

ATGGGTAAATACATGAGGAAATCCAAAACCACCGGCGATGTCGCCGCCGTAATCATGGAATCACCGTCTCACACCACCGCCGTTGGTGTCCGGACACGTGCCAAAACCCTTGCTCTCCAGAAATCTCCGCCGAATCACTCTGATTCCTCTTCCTTCCTCCAGCTCCGTAGCCGCCGCCTCCGTAAGGTTCCTCCGCCGCTTCCACCTCGCAAGGACACTGCTCCCGTTGGAAATTCTAGGCTTCGTGAATGTTCGGATGAAAAATTGGGAAATTTATGTGCTGAAGATGAGAATGAGAATCGCGATGGTGATTTCGCTGTTGAAGGTTCTTTTGGTGAAAATTTCGCAGAGATTGATGGTAGAGATAGAAGCACTAGAGAAAGCACACCTTGTAGTTTAATCAGGGATCCAAGTATCATTCATACCCCTGGTTCAACCACAAGACAAAGGACGAACCGCACTATTCAAGAACACATGCAAAGAAATACTCCAACAACTTATGAAGTGGATGAATTCTTTGCCTTGGCAGAGAAGCAGCAACAAGCATTATTTATGGAAAAGTACAATTTTGATGTAGTGAATGATGTACCTCTCCCAGGACGATACGAATGGGTCCCTGTACTTCCCTAG

Protein sequence

>MsG0780038598.01.T01

MGKYMRKSKTTGDVAAVIMESPSHTTAVGVRTRAKTLALQKSPPNHSDSSSFLQLRSRRLRKVPPPLPPRKDTAPVGNSRLRECSDEKLGNLCAEDENENRDGDFAVEGSFGENFAEIDGRDRSTRESTPCSLIRDPSIIHTPGSTTRQRTNRTIQEHMQRNTPTTYEVDEFFALAEKQQQALFMEKYNFDVVNDVPLPGRYEWVPVLP*