AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025987.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025987.01.T01 MTR_5g037140 97.778 90 1 1 20 108 35 124 2.60e-43 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025987.01.T01 AT1G69970 34.375 96 58 3 15 108 10 102 2.13e-12 58.9

Find 48 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAGGTTCTTAGAATTTC+TGG 0.050081 5:+28716592 MsG0580025987.01.T01:three_prime_UTR
TTCAGGAGAGCTGGAAATTC+TGG 0.279686 5:+28716466 MsG0580025987.01.T01:intron
TTATGGAAATTGATTTGTTA+AGG 0.309246 5:+28716639 MsG0580025987.01.T01:three_prime_UTR
GCAAGGGCTAATCACACTTA+TGG 0.311116 5:+28716622 MsG0580025987.01.T01:three_prime_UTR
TCTATATGTCTTATAGTATA+GGG 0.318965 5:+28714488 MsG0580025987.01.T01:five_prime_UTR
GGAAGAGTAGTATAACTATA+AGG 0.344414 5:-28714388 None:intergenic
CCAGAAATTCTAAGAACCTT+AGG 0.344623 5:-28716592 None:intergenic
TTCTATATGTCTTATAGTAT+AGG 0.362452 5:+28714487 MsG0580025987.01.T01:five_prime_UTR
GAAAACAAGAGAGAAAATAG+AGG 0.367300 5:-28714418 None:intergenic
TTTATGTCATAGGACTATAT+AGG 0.386534 5:-28714529 None:intergenic
TAAACAAACCTGTTGTGAAT+AGG 0.400300 5:-28714855 None:intergenic
TATGGAAATTGATTTGTTAA+GGG 0.410545 5:+28716640 MsG0580025987.01.T01:three_prime_UTR
TTTAGAGTACTTGTAGTGGT+GGG 0.429193 5:+28714633 MsG0580025987.01.T01:CDS
TTAGTTAGTGGTGGAGGAAC+AGG 0.433994 5:+28714684 MsG0580025987.01.T01:CDS
TTTAGTAGCTTAGTTAGTGG+TGG 0.443725 5:+28714675 MsG0580025987.01.T01:CDS
GTGAACTTATATTGTGAAGA+TGG 0.444473 5:+28716786 MsG0580025987.01.T01:three_prime_UTR
CTTTAGAGTACTTGTAGTGG+TGG 0.451220 5:+28714632 MsG0580025987.01.T01:CDS
TGTCAACCATGATGCACAAT+TGG 0.454537 5:+28714788 MsG0580025987.01.T01:CDS
GACCAGATCCTATTCACAAC+AGG 0.455835 5:+28714847 MsG0580025987.01.T01:CDS
CATGATGAACAAGTTGTTGT+TGG 0.456308 5:+28714747 MsG0580025987.01.T01:CDS
CAGAAATTCTAAGAACCTTA+GGG 0.467727 5:-28716591 None:intergenic
TGAACTTATATTGTGAAGAT+GGG 0.468741 5:+28716787 MsG0580025987.01.T01:three_prime_UTR
AGAGAAAATAGAGGGAGAGA+AGG 0.476996 5:-28714409 None:intergenic
TGAATAGGATCTGGTCCATT+GGG 0.478116 5:-28714840 None:intergenic
TGGAGAGTCACAAATTTCAA+TGG 0.493022 5:+28716822 MsG0580025987.01.T01:three_prime_UTR
GAATTTCTGGCTTGTATGCA+AGG 0.494361 5:+28716605 MsG0580025987.01.T01:three_prime_UTR
GTGGCCTTAAAAGGGAAAAG+AGG 0.499391 5:+28716672 MsG0580025987.01.T01:three_prime_UTR
GGAAATTCTGGTAGACCTCC+TGG 0.500969 5:+28716478 MsG0580025987.01.T01:CDS
AGTAGCTTAGTTAGTGGTGG+AGG 0.503163 5:+28714678 MsG0580025987.01.T01:CDS
TTAGAGTACTTGTAGTGGTG+GGG 0.504583 5:+28714634 MsG0580025987.01.T01:CDS
AAGATGGGGTTAGACAGAAA+TGG 0.513157 5:+28716802 MsG0580025987.01.T01:three_prime_UTR
AACCTGTTGTGAATAGGATC+TGG 0.513984 5:-28714849 None:intergenic
TGATTTCATTTACATCCCTA+AGG 0.541887 5:+28716576 MsG0580025987.01.T01:three_prime_UTR
AAAACAAGAGAGAAAATAGA+GGG 0.547310 5:-28714417 None:intergenic
TTTCTTTAGAGTACTTGTAG+TGG 0.554539 5:+28714629 MsG0580025987.01.T01:CDS
GTGAATAGGATCTGGTCCAT+TGG 0.561168 5:-28714841 None:intergenic
AATTTCTGGCTTGTATGCAA+GGG 0.564648 5:+28716606 MsG0580025987.01.T01:three_prime_UTR
TGAAGTCCAATTGTGCATCA+TGG 0.582511 5:-28714794 None:intergenic
TCAGTTGACTAAGTTTGACC+AGG 0.583639 5:-28716496 None:intergenic
AGTTGTTGTTGGTAAAGACA+AGG 0.593670 5:+28714758 MsG0580025987.01.T01:CDS
TTTAGGACTATATGTTTGAG+GGG 0.612589 5:+28716957 MsG0580025987.01.T01:three_prime_UTR
TTAGGACTATATGTTTGAGG+GGG 0.628123 5:+28716958 MsG0580025987.01.T01:three_prime_UTR
AACTACAAGACAATGGTCAG+AGG 0.649811 5:+28714713 MsG0580025987.01.T01:CDS
GTTGTTGTTGGTAAAGACAA+GGG 0.652393 5:+28714759 MsG0580025987.01.T01:CDS
AGTAAAAGAAGAGTTCCCAA+TGG 0.653384 5:+28714825 MsG0580025987.01.T01:CDS
GAACTTATATTGTGAAGATG+GGG 0.662145 5:+28716788 MsG0580025987.01.T01:three_prime_UTR
GACAAACAACTACAAGACAA+TGG 0.664124 5:+28714706 MsG0580025987.01.T01:CDS
GTTGACTAAGTTTGACCAGG+AGG 0.677258 5:-28716493 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAGATAAAAACTA+AGG + Chr5:28715465-28715484 MsG0580025987.01.T01:intron 10.0%
!! AAAAAAAAGATAAAAACTAA+GGG + Chr5:28715466-28715485 MsG0580025987.01.T01:intron 10.0%
!! ATTATAGATGAATAATATAT+TGG - Chr5:28716397-28716416 None:intergenic 10.0%
!! TTTGAAGATATTTAATATAT+AGG - Chr5:28716212-28716231 None:intergenic 10.0%
!!! ATCTTTTTTTTTTTTTTTAG+TGG - Chr5:28715457-28715476 None:intergenic 10.0%
!!! TTATATTATTTTTATGTCAT+AGG - Chr5:28714542-28714561 None:intergenic 10.0%
!! ATATAGAAGAAGATAAAAAA+AGG - Chr5:28714475-28714494 None:intergenic 15.0%
!! TATCTGTTAACTTATTATAA+AGG - Chr5:28715847-28715866 None:intergenic 15.0%
!! TTATACAACATTTAGAAAAT+AGG + Chr5:28715094-28715113 MsG0580025987.01.T01:intron 15.0%
!! TTTACTTTCTATTTATTTGT+TGG - Chr5:28715191-28715210 None:intergenic 15.0%
!!! GAATTTTGAAATAGATATTT+AGG - Chr5:28716085-28716104 None:intergenic 15.0%
!!! GTTTTTGGATTATTTTTTTT+TGG + Chr5:28715590-28715609 MsG0580025987.01.T01:intron 15.0%
!! AAAAAAAAATATCTTGGCTT+TGG + Chr5:28716982-28717001 MsG0580025987.01.T01:three_prime_UTR 20.0%
!! AAAAAAAATGTTACCTAATG+AGG - Chr5:28716435-28716454 None:intergenic 20.0%
!! AAAAAAACAGATAAAGTGTA+TGG + Chr5:28715877-28715896 MsG0580025987.01.T01:intron 20.0%
!! AAATATCTTCAAATACTTCA+AGG + Chr5:28716219-28716238 MsG0580025987.01.T01:intron 20.0%
!! GATATATAAGTGAAAAGAAA+AGG + Chr5:28715488-28715507 MsG0580025987.01.T01:intron 20.0%
!! TCTATATGTCTTATAGTATA+GGG + Chr5:28714488-28714507 MsG0580025987.01.T01:five_prime_UTR 20.0%
!! TGAAATAGATATTTAGGAAA+TGG - Chr5:28716079-28716098 None:intergenic 20.0%
!! TTCTATATGTCTTATAGTAT+AGG + Chr5:28714487-28714506 MsG0580025987.01.T01:five_prime_UTR 20.0%
!!! AACTTTTGATATTATGCTAA+GGG + Chr5:28715420-28715439 MsG0580025987.01.T01:intron 20.0%
!!! AAGGACCAATATATATATTT+TGG + Chr5:28716238-28716257 MsG0580025987.01.T01:intron 20.0%
!!! ACGTATTAAACATTAGTTTT+TGG + Chr5:28715575-28715594 MsG0580025987.01.T01:intron 20.0%
!!! ATGAATAATATATTGGTTTC+TGG - Chr5:28716390-28716409 None:intergenic 20.0%
!!! CTTTTGAACTTATTTTCTTT+GGG - Chr5:28716712-28716731 None:intergenic 20.0%
!!! GGTTTTCTCAATATAAAATT+TGG + Chr5:28717003-28717022 MsG0580025987.01.T01:three_prime_UTR 20.0%
!!! TAACTTTTGATATTATGCTA+AGG + Chr5:28715419-28715438 MsG0580025987.01.T01:intron 20.0%
!!! TATGGAAATTGATTTGTTAA+GGG + Chr5:28716640-28716659 MsG0580025987.01.T01:three_prime_UTR 20.0%
!!! TCATTAGGTAACATTTTTTT+TGG + Chr5:28716434-28716453 MsG0580025987.01.T01:intron 20.0%
!!! TCTTTTGAACTTATTTTCTT+TGG - Chr5:28716713-28716732 None:intergenic 20.0%
!!! TTATGGAAATTGATTTGTTA+AGG + Chr5:28716639-28716658 MsG0580025987.01.T01:three_prime_UTR 20.0%
!!! TTTATTTGTTGGTCATTATT+CGG - Chr5:28715180-28715199 None:intergenic 20.0%
!!! TTTCAATTGTTTTTAGTTCA+TGG + Chr5:28716185-28716204 MsG0580025987.01.T01:intron 20.0%
!!! TTTTTTGGTAACATATTTTC+AGG + Chr5:28716449-28716468 MsG0580025987.01.T01:intron 20.0%
! AAAACAAGAGAGAAAATAGA+GGG - Chr5:28714420-28714439 None:intergenic 25.0%
! AAATCTTTATCCTGCTATAT+TGG + Chr5:28715720-28715739 MsG0580025987.01.T01:intron 25.0%
! AAGAAGATCGAATCTAATTA+AGG - Chr5:28715638-28715657 None:intergenic 25.0%
! ACTAATGTTTAATACGTGTT+AGG - Chr5:28715572-28715591 None:intergenic 25.0%
! AGTCCTAAAAAATATGCATA+TGG - Chr5:28716946-28716965 None:intergenic 25.0%
! CATTTAGAAAATAGGATATG+AGG + Chr5:28715102-28715121 MsG0580025987.01.T01:intron 25.0%
! CCTGACCAAAATATATATAT+TGG - Chr5:28716246-28716265 None:intergenic 25.0%
! TAACTTTGAATTTCCTCATT+AGG + Chr5:28716419-28716438 MsG0580025987.01.T01:intron 25.0%
! TGAACTTATATTGTGAAGAT+GGG + Chr5:28716787-28716806 MsG0580025987.01.T01:three_prime_UTR 25.0%
! TTTATGTCATAGGACTATAT+AGG - Chr5:28714532-28714551 None:intergenic 25.0%
!! AAATTTTAAATGTGGAGAAG+TGG + Chr5:28716289-28716308 MsG0580025987.01.T01:intron 25.0%
!! AATCTAGTTCGATTAGATTA+GGG + Chr5:28715317-28715336 MsG0580025987.01.T01:intron 25.0%
!! AATTTTAAATGTGGAGAAGT+GGG + Chr5:28716290-28716309 MsG0580025987.01.T01:intron 25.0%
!! GTTTAAATCGGTTCAATTAA+AGG + Chr5:28715291-28715310 MsG0580025987.01.T01:intron 25.0%
!!! AGATTTTAAAGTCAGAGTTA+AGG - Chr5:28715706-28715725 None:intergenic 25.0%
!!! CCAATATATATATTTTGGTC+AGG + Chr5:28716243-28716262 MsG0580025987.01.T01:intron 25.0%
!!! GTAGTAGTTATTTCTTTTCA+AGG + Chr5:28714604-28714623 MsG0580025987.01.T01:CDS 25.0%
!!! TAGTTAGCTTTCTTTCTTTT+TGG - Chr5:28715754-28715773 None:intergenic 25.0%
!!! TTCAATTTTTGCCACTTATT+AGG + Chr5:28714930-28714949 MsG0580025987.01.T01:intron 25.0%
!!! TTTTAGGACTATATGTTTGA+GGG + Chr5:28716956-28716975 MsG0580025987.01.T01:three_prime_UTR 25.0%
!!! TTTTTAGGACTATATGTTTG+AGG + Chr5:28716955-28716974 MsG0580025987.01.T01:three_prime_UTR 25.0%
ACATTGCATAATATATGCAG+GGG - Chr5:28716338-28716357 None:intergenic 30.0%
AGACATTGCATAATATATGC+AGG - Chr5:28716340-28716359 None:intergenic 30.0%
AGCAATGTATACCTAATAAG+TGG - Chr5:28714944-28714963 None:intergenic 30.0%
ATGCAGAAGATGACAAAAAA+AGG + Chr5:28716542-28716561 MsG0580025987.01.T01:three_prime_UTR 30.0%
ATGTTTAATACGTGTTAGGA+AGG - Chr5:28715568-28715587 None:intergenic 30.0%
CAAAAGAGAGACAACAAAAA+AGG - Chr5:28715989-28716008 None:intergenic 30.0%
CTATATTCTAGGTGCAATAT+AGG + Chr5:28715052-28715071 MsG0580025987.01.T01:intron 30.0%
GAAAACAAGAGAGAAAATAG+AGG - Chr5:28714421-28714440 None:intergenic 30.0%
GAACTTATATTGTGAAGATG+GGG + Chr5:28716788-28716807 MsG0580025987.01.T01:three_prime_UTR 30.0%
GACATTGCATAATATATGCA+GGG - Chr5:28716339-28716358 None:intergenic 30.0%
GCTTATGAGTAATTAAGAAG+TGG - Chr5:28715917-28715936 None:intergenic 30.0%
GGAAGAGTAGTATAACTATA+AGG - Chr5:28714391-28714410 None:intergenic 30.0%
GGGGGAAAAAAAAAATATCT+TGG + Chr5:28716976-28716995 MsG0580025987.01.T01:three_prime_UTR 30.0%
GGTATGTGATAAGAATAGAA+AGG - Chr5:28715617-28715636 None:intergenic 30.0%
GTGAACTTATATTGTGAAGA+TGG + Chr5:28716786-28716805 MsG0580025987.01.T01:three_prime_UTR 30.0%
GTGGTTCAATCAGTTTAAAT+CGG + Chr5:28715279-28715298 MsG0580025987.01.T01:intron 30.0%
TAAACAAACCTGTTGTGAAT+AGG - Chr5:28714858-28714877 None:intergenic 30.0%
TAAACTGATTGAACCACAAT+TGG - Chr5:28715276-28715295 None:intergenic 30.0%
TATGTGACACTCTATATTCT+AGG + Chr5:28715041-28715060 MsG0580025987.01.T01:intron 30.0%
TGATTTCATTTACATCCCTA+AGG + Chr5:28716576-28716595 MsG0580025987.01.T01:three_prime_UTR 30.0%
TGCAGAAGATGACAAAAAAA+GGG + Chr5:28716543-28716562 MsG0580025987.01.T01:three_prime_UTR 30.0%
TGTTTAATACGTGTTAGGAA+GGG - Chr5:28715567-28715586 None:intergenic 30.0%
TTCAGAGAGAAAAAATGACA+TGG - Chr5:28715952-28715971 None:intergenic 30.0%
! AGCTCACGAAATTTTAAATG+TGG + Chr5:28716281-28716300 MsG0580025987.01.T01:intron 30.0%
! ATTTTAAATGTGGAGAAGTG+GGG + Chr5:28716291-28716310 MsG0580025987.01.T01:intron 30.0%
! CAATCTAGTTCGATTAGATT+AGG + Chr5:28715316-28715335 MsG0580025987.01.T01:intron 30.0%
! CAGAAATTCTAAGAACCTTA+GGG - Chr5:28716594-28716613 None:intergenic 30.0%
! TTTAGGACTATATGTTTGAG+GGG + Chr5:28716957-28716976 MsG0580025987.01.T01:three_prime_UTR 30.0%
!! AACTAGTTGATTTGACTCTT+CGG + Chr5:28715386-28715405 MsG0580025987.01.T01:intron 30.0%
!! AAGAGAAAAAGTGTTGCATA+TGG + Chr5:28714563-28714582 MsG0580025987.01.T01:exon 30.0%
!! TTTCTTTAGAGTACTTGTAG+TGG + Chr5:28714629-28714648 MsG0580025987.01.T01:CDS 30.0%
!!! CTGCCATATGCATATTTTTT+AGG + Chr5:28716940-28716959 MsG0580025987.01.T01:three_prime_UTR 30.0%
!!! GTTTTTAGTAGCTTAGTTAG+TGG + Chr5:28714672-28714691 MsG0580025987.01.T01:CDS 30.0%
AAAACCGATTGAACCAATTG+TGG + Chr5:28715260-28715279 MsG0580025987.01.T01:intron 35.0%
ACCAATTGAGCTAAGCTTAT+GGG + Chr5:28716362-28716381 MsG0580025987.01.T01:intron 35.0%
AGTAAAAGAAGAGTTCCCAA+TGG + Chr5:28714825-28714844 MsG0580025987.01.T01:CDS 35.0%
CATGATGAACAAGTTGTTGT+TGG + Chr5:28714747-28714766 MsG0580025987.01.T01:CDS 35.0%
CCAAACAACTGGTCAATTAT+TGG + Chr5:28715360-28715379 MsG0580025987.01.T01:intron 35.0%
CCAATAATTGACCAGTTGTT+TGG - Chr5:28715363-28715382 None:intergenic 35.0%
CCAATTGAACCATAACTCAA+AGG - Chr5:28715142-28715161 None:intergenic 35.0%
CCTAAGGTTCTTAGAATTTC+TGG + Chr5:28716592-28716611 MsG0580025987.01.T01:three_prime_UTR 35.0%
GACAAACAACTACAAGACAA+TGG + Chr5:28714706-28714725 MsG0580025987.01.T01:CDS 35.0%
GATTAGATTAGGGTTCAAAC+AGG + Chr5:28715327-28715346 MsG0580025987.01.T01:intron 35.0%
TAATTGACCAGTTGTTTGGT+TGG - Chr5:28715359-28715378 None:intergenic 35.0%
TACCAATTGAGCTAAGCTTA+TGG + Chr5:28716361-28716380 MsG0580025987.01.T01:intron 35.0%
TGGAGAGTCACAAATTTCAA+TGG + Chr5:28716822-28716841 MsG0580025987.01.T01:three_prime_UTR 35.0%
TGTTAGGAAGGGAACATAAT+TGG - Chr5:28715556-28715575 None:intergenic 35.0%
TTAGGACTATATGTTTGAGG+GGG + Chr5:28716958-28716977 MsG0580025987.01.T01:three_prime_UTR 35.0%
TTTAGTAGCTTAGTTAGTGG+TGG + Chr5:28714675-28714694 MsG0580025987.01.T01:CDS 35.0%
! AGTTGTTGTTGGTAAAGACA+AGG + Chr5:28714758-28714777 MsG0580025987.01.T01:CDS 35.0%
! ATGGTTCAATTGGTTTATCG+TGG + Chr5:28715149-28715168 MsG0580025987.01.T01:intron 35.0%
! CCAGAAATTCTAAGAACCTT+AGG - Chr5:28716595-28716614 None:intergenic 35.0%
! CCTTTGAGTTATGGTTCAAT+TGG + Chr5:28715139-28715158 MsG0580025987.01.T01:intron 35.0%
! CTTTCCTCTTTTCCCTTTTA+AGG - Chr5:28716679-28716698 None:intergenic 35.0%
! GTTGTTGTTGGTAAAGACAA+GGG + Chr5:28714759-28714778 MsG0580025987.01.T01:CDS 35.0%
! TGAACCACAATTGGTTCAAT+CGG - Chr5:28715267-28715286 None:intergenic 35.0%
! TTGTTAAGGGAAGAGTTTTG+TGG + Chr5:28716653-28716672 MsG0580025987.01.T01:three_prime_UTR 35.0%
! TTTAGAGTACTTGTAGTGGT+GGG + Chr5:28714633-28714652 MsG0580025987.01.T01:CDS 35.0%
!! AAGAGTTTTGTGGCCTTAAA+AGG + Chr5:28716663-28716682 MsG0580025987.01.T01:three_prime_UTR 35.0%
!! AATTTCTGGCTTGTATGCAA+GGG + Chr5:28716606-28716625 MsG0580025987.01.T01:three_prime_UTR 35.0%
!! AGAGTTTTGTGGCCTTAAAA+GGG + Chr5:28716664-28716683 MsG0580025987.01.T01:three_prime_UTR 35.0%
!! TAACATATTTTCAGGAGAGC+TGG + Chr5:28716457-28716476 MsG0580025987.01.T01:intron 35.0%
AACCTGTTGTGAATAGGATC+TGG - Chr5:28714852-28714871 None:intergenic 40.0%
AACTACAAGACAATGGTCAG+AGG + Chr5:28714713-28714732 MsG0580025987.01.T01:CDS 40.0%
AAGATGGGGTTAGACAGAAA+TGG + Chr5:28716802-28716821 MsG0580025987.01.T01:three_prime_UTR 40.0%
AGAGAAAATAGAGGGAGAGA+AGG - Chr5:28714412-28714431 None:intergenic 40.0%
CCAATTGAGCTAAGCTTATG+GGG + Chr5:28716363-28716382 MsG0580025987.01.T01:intron 40.0%
GATCAAACCAACCAAACAAC+TGG + Chr5:28715349-28715368 MsG0580025987.01.T01:intron 40.0%
GGTCAAGTTTCCAATATAGC+AGG - Chr5:28715733-28715752 None:intergenic 40.0%
TCAGTTGACTAAGTTTGACC+AGG - Chr5:28716499-28716518 None:intergenic 40.0%
TGAAGTCCAATTGTGCATCA+TGG - Chr5:28714797-28714816 None:intergenic 40.0%
TGAATAGGATCTGGTCCATT+GGG - Chr5:28714843-28714862 None:intergenic 40.0%
TGCATAATATATGCAGGGGT+CGG - Chr5:28716334-28716353 None:intergenic 40.0%
TGTCAACCATGATGCACAAT+TGG + Chr5:28714788-28714807 MsG0580025987.01.T01:CDS 40.0%
! CTCATCAGACCTTTGAGTTA+TGG + Chr5:28715130-28715149 MsG0580025987.01.T01:intron 40.0%
! TTAGAGTACTTGTAGTGGTG+GGG + Chr5:28714634-28714653 MsG0580025987.01.T01:CDS 40.0%
!! ATTTTGGTCAGGTAGTCTAG+TGG + Chr5:28716254-28716273 MsG0580025987.01.T01:intron 40.0%
!! CTTTAGAGTACTTGTAGTGG+TGG + Chr5:28714632-28714651 MsG0580025987.01.T01:CDS 40.0%
!! GAATTTCTGGCTTGTATGCA+AGG + Chr5:28716605-28716624 MsG0580025987.01.T01:three_prime_UTR 40.0%
!!! GGTGGGGTTTGTTTGTTTTA+TGG + Chr5:28714650-28714669 MsG0580025987.01.T01:CDS 40.0%
AGTAGCTTAGTTAGTGGTGG+AGG + Chr5:28714678-28714697 MsG0580025987.01.T01:CDS 45.0%
CATAATATATGCAGGGGTCG+GGG - Chr5:28716332-28716351 None:intergenic 45.0%
CCCCATAAGCTTAGCTCAAT+TGG - Chr5:28716366-28716385 None:intergenic 45.0%
GACCAGATCCTATTCACAAC+AGG + Chr5:28714847-28714866 MsG0580025987.01.T01:CDS 45.0%
GCAAGGGCTAATCACACTTA+TGG + Chr5:28716622-28716641 MsG0580025987.01.T01:three_prime_UTR 45.0%
GCATAATATATGCAGGGGTC+GGG - Chr5:28716333-28716352 None:intergenic 45.0%
GTGAATAGGATCTGGTCCAT+TGG - Chr5:28714844-28714863 None:intergenic 45.0%
GTTGACTAAGTTTGACCAGG+AGG - Chr5:28716496-28716515 None:intergenic 45.0%
TTCAGGAGAGCTGGAAATTC+TGG + Chr5:28716466-28716485 MsG0580025987.01.T01:intron 45.0%
! GTGGCCTTAAAAGGGAAAAG+AGG + Chr5:28716672-28716691 MsG0580025987.01.T01:three_prime_UTR 45.0%
! TTAGTTAGTGGTGGAGGAAC+AGG + Chr5:28714684-28714703 MsG0580025987.01.T01:CDS 45.0%
GGAAATTCTGGTAGACCTCC+TGG + Chr5:28716478-28716497 MsG0580025987.01.T01:CDS 50.0%
TGGTCAGGTAGTCTAGTGGT+TGG + Chr5:28716258-28716277 MsG0580025987.01.T01:intron 50.0%
! ATGTGGAGAAGTGGGGTGTC+TGG + Chr5:28716298-28716317 MsG0580025987.01.T01:intron 55.0%
! TGTGGAGAAGTGGGGTGTCT+GGG + Chr5:28716299-28716318 MsG0580025987.01.T01:intron 55.0%
! GTGGAGAAGTGGGGTGTCTG+GGG + Chr5:28716300-28716319 MsG0580025987.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 28714359 28717040 28714359 ID=MsG0580025987.01;Name=MsG0580025987.01
Chr5 mRNA 28714359 28717040 28714359 ID=MsG0580025987.01.T01;Parent=MsG0580025987.01;Name=MsG0580025987.01.T01;_AED=0.38;_eAED=0.38;_QI=223|1|1|1|0|0|2|530|108
Chr5 exon 28714359 28714868 28714359 ID=MsG0580025987.01.T01:exon:6996;Parent=MsG0580025987.01.T01
Chr5 exon 28716471 28717040 28716471 ID=MsG0580025987.01.T01:exon:6997;Parent=MsG0580025987.01.T01
Chr5 five_prime_UTR 28714359 28714581 28714359 ID=MsG0580025987.01.T01:five_prime_utr;Parent=MsG0580025987.01.T01
Chr5 CDS 28714582 28714868 28714582 ID=MsG0580025987.01.T01:cds;Parent=MsG0580025987.01.T01
Chr5 CDS 28716471 28716510 28716471 ID=MsG0580025987.01.T01:cds;Parent=MsG0580025987.01.T01
Chr5 three_prime_UTR 28716511 28717040 28716511 ID=MsG0580025987.01.T01:three_prime_utr;Parent=MsG0580025987.01.T01
Gene Sequence

>MsG0580025987.01.T01

ATGGATACTAATACTAGTAGTAGTAGTAGTTATTTCTTTTCAAGGTTTTTCTTTAGAGTACTTGTAGTGGTGGGGTTTGTTTGTTTTATGGTTTTTAGTAGCTTAGTTAGTGGTGGAGGAACAGGACAAACAACTACAAGACAATGGTCAGAGGAAACACTCAAACATGATGAACAAGTTGTTGTTGGTAAAGACAAGGGTGTTGTTGTCAACCATGATGCACAATTGGACTTCAACTATATGAGTAAAAGAAGAGTTCCCAATGGACCAGATCCTATTCACAACAGGAGAGCTGGAAATTCTGGTAGACCTCCTGGTCAAACTTAG

Protein sequence

>MsG0580025987.01.T01

MDTNTSSSSSYFFSRFFFRVLVVVGFVCFMVFSSLVSGGGTGQTTTRQWSEETLKHDEQVVVGKDKGVVVNHDAQLDFNYMSKRRVPNGPDPIHNRRAGNSGRPPGQT*