AlfalfaGEDB | MsG0880042521.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042521.01

KEGG: -
GO: -
PFAM: PF07303

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042521.01.T01	XP_024627387.1	85.568	880	84	3	1	869	1	848	0	1501

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042521.01.T01	A0A396GCI4	85.568	880	84	3	1	869	1	848	0.0	1501

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048464.01	MsG0880042521.01	0.814289	1.661945e-51	1.110673e-48
MsG0180000470.01	MsG0880042521.01	0.804986	1.660064e-49	8.681248e-47
MsG0180001971.01	MsG0880042521.01	0.812628	3.853141e-51	2.462180e-48
MsG0180005185.01	MsG0880042521.01	0.824288	8.754930e-54	7.720901e-51
MsG0180006054.01	MsG0880042521.01	0.803289	3.742836e-49	1.873609e-46
MsG0280006601.01	MsG0880042521.01	0.814029	1.896603e-51	1.258594e-48
MsG0280006770.01	MsG0880042521.01	0.837248	5.814884e-57	7.508610e-54
MsG0280008076.01	MsG0880042521.01	0.811049	8.502792e-51	5.209746e-48
MsG0280010349.01	MsG0880042521.01	0.805779	1.131925e-49	6.041490e-47
MsG0280010350.01	MsG0880042521.01	0.812242	4.677464e-51	2.958499e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042521.01.T01	MTR_8g015610	86.698	842	83	3	55	869	178	1017	0.0	1463
MsG0880042521.01.T01	MTR_8g015620	75.993	604	124	3	286	869	618	1220	0.0	898
MsG0880042521.01.T01	MTR_8g015620	52.836	335	85	9	1	293	156	459	1.05e-72	260
MsG0880042521.01.T01	MTR_4g027360	81.034	58	11	0	363	420	15	72	1.07e-25	102
MsG0880042521.01.T01	MTR_1g021875	71.014	69	17	1	291	356	252	320	1.37e-17	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042521.01.T01	AT3G21290	30.399	602	336	19	288	867	649	1189	1.42e-47	184
MsG0880042521.01.T01	AT3G21290	27.985	268	128	8	1	239	182	413	1.23e-11	69.3
MsG0880042521.01.T01	AT3G21290	30.399	602	336	19	288	867	460	1000	2.33e-47	183
MsG0880042521.01.T01	AT3G21290	46.154	78	39	2	163	239	149	224	3.70e-11	67.8

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Find 197 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATACAACATTTATC+CGG	0.484770	8:+9949824	None:intergenic
AAAACCTGAACTTAATACCA+AGG	0.655029	8:+9951224	None:intergenic
AAAAGTCCCCAGGAATTCCA+GGG	0.635404	8:-9951631	MsG0880042521.01.T01:CDS
AAACAACTTTGGATTCTGGA+AGG	0.579277	8:-9951251	MsG0880042521.01.T01:CDS
AAAGAAGAAAGAGTTATCCT+CGG	0.615874	8:-9950857	MsG0880042521.01.T01:CDS
AAAGCAGACAGCGCGAACGT+TGG	0.549641	8:-9951099	MsG0880042521.01.T01:CDS
AAAGGAGGAACCTGAATTAA+AGG	0.288377	8:-9950803	MsG0880042521.01.T01:CDS
AAATGGTTCGTTTAAACATA+TGG	0.303322	8:-9951337	MsG0880042521.01.T01:CDS
AAATGTAATTACTTATGCAT+AGG	0.587387	8:-9949888	MsG0880042521.01.T01:three_prime_UTR
AAATTCACAAGTTGAAGACA+AGG	0.616512	8:+9954999	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCTGAACTTAATACCA+AGG	+	Chr8:9953705-9953724	None:intergenic	30.0%
AAAGAAGAAAGAGTTATCCT+CGG	-	Chr8:9954069-9954088	MsG0880042521.01.T01:intron	30.0%
AACATTCTCTGCAAATCTAT+TGG	+	Chr8:9951936-9951955	None:intergenic	30.0%
AACATTGATGAGAAATCTGA+AGG	-	Chr8:9952867-9952886	MsG0880042521.01.T01:intron	30.0%
AACCTCTTGTGTAAAAAAGA+GGG	-	Chr8:9950301-9950320	MsG0880042521.01.T01:intron	30.0%
AATAAAGAACAACTGCTTAC+TGG	+	Chr8:9954168-9954187	None:intergenic	30.0%
ACATTTGGAAAAATTGCTCA+GGG	-	Chr8:9953424-9953443	MsG0880042521.01.T01:intron	30.0%
ACTATAAAAAGAGTAAGTGG+TGG	-	Chr8:9952169-9952188	MsG0880042521.01.T01:CDS	30.0%
ACTTGCTTGACATTTATACA+TGG	+	Chr8:9950159-9950178	None:intergenic	30.0%
AGAGTGTATGACAATAAGTA+AGG	+	Chr8:9949870-9949889	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	9949781	9955167	9949781	ID=MsG0880042521.01;Name=MsG0880042521.01
Chr8	mRNA	9949781	9955167	9949781	ID=MsG0880042521.01.T01;Parent=MsG0880042521.01;Name=MsG0880042521.01.T01;_AED=0.11;_eAED=0.11;_QI=0\|0.4\|0.36\|1\|0.6\|0.54\|11\|193\|869
Chr8	exon	9949781	9950021	9949781	ID=MsG0880042521.01.T01:exon:2705;Parent=MsG0880042521.01.T01
Chr8	exon	9950145	9950195	9950145	ID=MsG0880042521.01.T01:exon:2704;Parent=MsG0880042521.01.T01
Chr8	exon	9950361	9950475	9950361	ID=MsG0880042521.01.T01:exon:2703;Parent=MsG0880042521.01.T01
Chr8	exon	9950576	9950653	9950576	ID=MsG0880042521.01.T01:exon:2702;Parent=MsG0880042521.01.T01
Chr8	exon	9950781	9952382	9950781	ID=MsG0880042521.01.T01:exon:2701;Parent=MsG0880042521.01.T01
Chr8	exon	9952606	9952688	9952606	ID=MsG0880042521.01.T01:exon:2700;Parent=MsG0880042521.01.T01
Chr8	exon	9952768	9952836	9952768	ID=MsG0880042521.01.T01:exon:2699;Parent=MsG0880042521.01.T01
Chr8	exon	9952950	9953212	9952950	ID=MsG0880042521.01.T01:exon:2698;Parent=MsG0880042521.01.T01
Chr8	exon	9953355	9953426	9953355	ID=MsG0880042521.01.T01:exon:2697;Parent=MsG0880042521.01.T01
Chr8	exon	9953584	9953651	9953584	ID=MsG0880042521.01.T01:exon:2696;Parent=MsG0880042521.01.T01
Chr8	exon	9955007	9955167	9955007	ID=MsG0880042521.01.T01:exon:2695;Parent=MsG0880042521.01.T01
Chr8	CDS	9955007	9955167	9955007	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	CDS	9953584	9953651	9953584	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	CDS	9953355	9953426	9953355	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	CDS	9952950	9953212	9952950	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	CDS	9952768	9952836	9952768	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	CDS	9952606	9952688	9952606	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	CDS	9950781	9952382	9950781	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	CDS	9950576	9950653	9950576	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	CDS	9950361	9950475	9950361	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	CDS	9950145	9950195	9950145	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	CDS	9949974	9950021	9949974	ID=MsG0880042521.01.T01:cds;Parent=MsG0880042521.01.T01
Chr8	three_prime_UTR	9949781	9949973	9949781	ID=MsG0880042521.01.T01:three_prime_utr;Parent=MsG0880042521.01.T01

Gene Sequence

>MsG0880042521.01.T01

ATGGACGATTTAACTAAGAATCACGTCAAAATGCGGTCAGAGGAAGCCAAACCCAAGTTCAAGTCACTCAAGTATTGTCACACACTCCTTACTTATTGTCATACACTCTTGATTTTTATTTTTTTTTGCACTATTCCCTTTGAAAACCTTGTCTTCAACTTAGCCATTGACTTGGAGCCTGGGAACCCGTCCATGAAGAGCCAGATAAAGGCATTGGCAGCTGATGAAGCTACACCAAGGAAGAATTACGATAAAATGGAAGAGGCTGGACTTAAGGAAAGGGAAGTGGAAACTCTTCAAGTTGGAGGCTTCCATAGATTTGGATTGATGTCAATAAGTGCTACTGCCAAGGGCAAACGTTCTTCACGGAGAGCTGCAAATATCTCTAAAAGCCTTTATGATGTTGTGCCATCACGAATGACAGACAAGCAAGACACCAATACTGTTTTTGAGAAAGAAATCCCTACCAGGGCAAGCAAAGGAAATAATGGATCTAAACCAATAGATTTGCAGAGAATGTTAATTTCTCTCCTAAGGGATAACCCTAACGGAATGACTTTTGAGGCCTTGGAGAAAGTAGTCAGTGACACACATCCAAGTTTCATACAGGATCTTGAGCCCACTATAAAAAGAATTGCAAAATATATCCCTGGAAGGTATATTTTAAAGCCAGAAGTGGATTCAGAAAGCTTCAAGAAACCTACTGAAAGTGGAAGTTTCTTCAAAATCAAATATTGTACTACATCAGCTCCACAGGGAAGAGGTTCCAAAGAGGAAGTTCCAAATGACGATTTGGAGGAAACAATGCAAGTAAAATCCAAAGTGAAAGAAGAATCAAACACATTGGAAAAAATTGATATGAAACATGCTTCACATGATTATCAACAGCTGAAGGAGCGCAAAAGTTATATGGGGAGTTTGTTTGATGAAAGGGAAAGTGAAGTCACGGATAGCTCTAGGAACGAACAGTCTGATAGCCTATCTAAAGGTAAACATAAGAGGGGTTCAGAATTGACGAACATTGATGAGAAATCTGAAGGTACAAAGAGGTTGAAAGCAGGACACTTGACTCGTGAATCATATTCTCCAGGTACAGATGTGAAAATGTTTGGGAACTCTAGAATTTTTTCACCATTTGAACTTACTGAAGACTCTGGTAGAGCTGACAGACAAAGAAACTGCAATCGTGGTTTCCAGAAAGGATACAGTCAGGCATTGTCTGGAAAATCTAGTTCAGATTTACGAAAAACAGGTCAAAGGTCTTTTGACCAAAGACCTCTAGGAAACCCTTCCTATCCATTGGAAAAATCAGATAAACTTGGTGAAAGCACAAGGCACAACAGGAAACACACAGGACAGGACATCCGTACACATGAAGTTTCTTTTGTGCCGGAAAATAAATCTCTTAAAGATGCTCAAAATGAAGATATTTATGCCACCAAGAAAAAAGTCCCCAGGAATTCCAGGGATGGTAGTAACGGAACTAAGCAGTCACTATTATCAGTGGATTCTAATTACCAAAAACACAGTGAAATGGTTGGTAAGTTAAAGGAAGGCCGACAAGGTACGCAGTCACATTTGGAAAAATTGCTCAGGGATAACAACAGAACTGGTCTTGTTAAATCCTCCACTGTTAATGGGCGAGGTATCTCGCTTAAGAGAGAGCTTTCAGACTTGGATTTGGGAGAACTTCATGAGTCCACTCCCGAAGAAACCATTGTTGCAAAGCAATTTGAACGAAATGGTTCGTTTAAACATATGGGAATCAAAGCAAACACTTCAGAGGACATGAATTCAAATATCACTGAAGTAAAACCTTTATTGAAAACAACTTTGGATTCTGGAAGGCCAACCTTGGTATTAAGTTCAGGTTTTCCTAGCATTTTGGACAACACAAATGAAAAGAATGTTGATAATCATTTTGAAGATTCAACAAAGTCTCGTTGTAGCGTTACACAAACTCATTCACATCATTTGAAAGCAGACAGCGCGAACGTTGGATCTCAAAAAAAATTGCCAGAAGTGAGCCGTGGTATTGATTTGGATGGTTGCAGGGAAACCAATAGAAGAGTGCCTGCAAATAGATCTAAGCAAGATACAAAACATGGAATGGTTCCCTACCCTGTGAAAGAAAGTAAGATACAAACACCTAATTCATGTGAAGAGGTGCCTGATGGAAGAAAGGATTCGGTATTTGCAAATAGAAATAATGGTGACCAAAAGAAGAAAGAGTTATCCTCGGATGAAAATAGTTGCTCTTATTCAAAGTTTGAAAAGGAGGAACCTGAATTAAAGGGACCTATAACAACTTTTTCCCAATACAAAGAATATGTGCAGGATTACCAGGGTAAATACGAGAGTTACATCTCCTTACACAAGATTTTGAAGGAATACAGGGTTGAGTTTCAGAAACTAGGTGATGATTTAGAGAATGCTAAAAGCAAGGGGGATAAGGATAGATATGACGGCATTGCAACACAAATTAGGGAATCCTATAGGCAATGCGGATCGAGACAAAACAGACTGAAGAAAATATTTATTGTGCTTCATGAAGAACTGGTGAATACGAAGCAAAGGATCAGAGACTTTGTTCAGTCTAATAAAGATTGA

Protein sequence

>MsG0880042521.01.T01

MDDLTKNHVKMRSEEAKPKFKSLKYCHTLLTYCHTLLIFIFFCTIPFENLVFNLAIDLEPGNPSMKSQIKALAADEATPRKNYDKMEEAGLKEREVETLQVGGFHRFGLMSISATAKGKRSSRRAANISKSLYDVVPSRMTDKQDTNTVFEKEIPTRASKGNNGSKPIDLQRMLISLLRDNPNGMTFEALEKVVSDTHPSFIQDLEPTIKRIAKYIPGRYILKPEVDSESFKKPTESGSFFKIKYCTTSAPQGRGSKEEVPNDDLEETMQVKSKVKEESNTLEKIDMKHASHDYQQLKERKSYMGSLFDERESEVTDSSRNEQSDSLSKGKHKRGSELTNIDEKSEGTKRLKAGHLTRESYSPGTDVKMFGNSRIFSPFELTEDSGRADRQRNCNRGFQKGYSQALSGKSSSDLRKTGQRSFDQRPLGNPSYPLEKSDKLGESTRHNRKHTGQDIRTHEVSFVPENKSLKDAQNEDIYATKKKVPRNSRDGSNGTKQSLLSVDSNYQKHSEMVGKLKEGRQGTQSHLEKLLRDNNRTGLVKSSTVNGRGISLKRELSDLDLGELHESTPEETIVAKQFERNGSFKHMGIKANTSEDMNSNITEVKPLLKTTLDSGRPTLVLSSGFPSILDNTNEKNVDNHFEDSTKSRCSVTQTHSHHLKADSANVGSQKKLPEVSRGIDLDGCRETNRRVPANRSKQDTKHGMVPYPVKESKIQTPNSCEEVPDGRKDSVFANRNNGDQKKKELSSDENSCSYSKFEKEEPELKGPITTFSQYKEYVQDYQGKYESYISLHKILKEYRVEFQKLGDDLENAKSKGDKDRYDGIATQIRESYRQCGSRQNRLKKIFIVLHEELVNTKQRIRDFVQSNKD*