AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046815.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046815.01.T01 MTR_4g115320 72.059 136 26 4 1 135 1 125 2.04e-57 180
MsG0880046815.01.T01 MTR_4g115320 72.059 136 26 4 1 135 31 155 1.44e-56 179
MsG0880046815.01.T01 MTR_3g113180 66.912 136 33 3 1 135 1 125 2.58e-50 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046815.01.T01 AT3G53270 42.254 142 58 3 1 135 1 125 1.66e-27 103
MsG0880046815.01.T01 AT3G53270 42.254 142 58 3 1 135 1 125 1.74e-27 103
MsG0880046815.01.T01 AT3G53270 42.254 142 58 3 1 135 1 125 1.74e-27 103
MsG0880046815.01.T01 AT3G53270 42.254 142 58 3 1 135 1 125 1.74e-27 103
MsG0880046815.01.T01 AT3G53270 42.254 142 58 3 1 135 1 125 1.74e-27 103
MsG0880046815.01.T01 AT3G53270 42.254 142 58 3 1 135 1 125 1.74e-27 103
MsG0880046815.01.T01 AT3G53270 42.254 142 58 3 1 135 1 125 1.74e-27 103
MsG0880046815.01.T01 AT3G53270 42.254 142 58 3 1 135 1 125 1.74e-27 103
MsG0880046815.01.T01 AT3G53270 42.254 142 58 3 1 135 1 125 1.74e-27 103

Find 74 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTATCATAAACTATATT+TGG 0.102447 8:-78655086 None:intergenic
AGATTTCTCTGCTGCTAATT+AGG 0.135171 8:+78651259 MsG0880046815.01.T01:intron
GTTTATAAAATGTTTGTTTC+TGG 0.141917 8:-78654818 None:intergenic
AGTTCTAGTTTCTTGTTTAT+AGG 0.242421 8:+78654949 MsG0880046815.01.T01:three_prime_UTR
GTTCTAGTTTCTTGTTTATA+GGG 0.258391 8:+78654950 MsG0880046815.01.T01:three_prime_UTR
CTGATATGTGCTTTATGTTT+TGG 0.261909 8:-78654739 None:intergenic
CTTGAAATTATCCGTATTCA+TGG 0.266659 8:-78651290 None:intergenic
TAAAGAAGCAAGCAGTATAT+TGG 0.270087 8:+78654712 MsG0880046815.01.T01:intron
CATCACCGCGTGAGCACTTC+TGG 0.275664 8:-78651032 None:intergenic
GATTTCTCTGCTGCTAATTA+GGG 0.276476 8:+78651260 MsG0880046815.01.T01:intron
AGTTTCTATATTGAAATAAA+AGG 0.281234 8:-78652125 None:intergenic
AGGGATATATAGACCTTAAA+AGG 0.310210 8:-78652256 None:intergenic
GAGCGATTAGGGAGGGATTT+CGG 0.374618 8:-78650950 None:intergenic
TTCTATCATAAACTATATTT+GGG 0.378279 8:-78655085 None:intergenic
TAGTTTATGATAGAACATTA+TGG 0.380959 8:+78655093 MsG0880046815.01.T01:three_prime_UTR
CTAAGTCAACAGCACCAAAA+AGG 0.386635 8:-78653220 None:intergenic
TTTCATATGCAGCTTGAATA+CGG 0.399741 8:-78653295 None:intergenic
TAACCTGCATAGGAATATAA+AGG 0.405299 8:-78652148 None:intergenic
ACCTTAAAAGGAGGTTTGAA+TGG 0.413165 8:-78652244 None:intergenic
CTCTTCCTTCCTCTTCTCAC+TGG 0.415942 8:+78651078 MsG0880046815.01.T01:five_prime_UTR
TCAGAAGACAAGGAGTTGAT+AGG 0.429891 8:+78654758 MsG0880046815.01.T01:three_prime_UTR
CAGCATTCTTTGACTAAAGC+AGG 0.435741 8:-78653183 None:intergenic
AGGGTTCTTCACCATGAATA+CGG 0.446187 8:+78651279 MsG0880046815.01.T01:exon
ACTCCTTTATATTCCTATGC+AGG 0.454811 8:+78652145 MsG0880046815.01.T01:CDS
TTACCAGGTGAAGAGAGAAT+TGG 0.456552 8:-78651113 None:intergenic
TAAAGTTGAGCGTAATTTCA+AGG 0.460342 8:-78650978 None:intergenic
TTTAAGGTCTATATATCCCT+TGG 0.461371 8:+78652259 MsG0880046815.01.T01:CDS
TGGAGAAGATTGCTGATGAT+TGG 0.465084 8:+78654789 MsG0880046815.01.T01:three_prime_UTR
TTCATATGCAGCTTGAATAC+GGG 0.468827 8:-78653294 None:intergenic
AATTCTTGTTATTGATGCAA+AGG 0.475694 8:+78653140 MsG0880046815.01.T01:CDS
AAAGACAGTACAGGCAATAC+AGG 0.479533 8:-78652210 None:intergenic
GATGCAAAGGCACATGATAT+CGG 0.480158 8:+78653153 MsG0880046815.01.T01:CDS
TGTATAGGTACATGTTTACC+TGG 0.480675 8:+78651897 MsG0880046815.01.T01:intron
CCTTCTGTAATTGTTCGAGT+TGG 0.482324 8:-78653271 None:intergenic
ATATTCCTATGCAGGTTACA+TGG 0.482490 8:+78652153 MsG0880046815.01.T01:CDS
TATATTGAAATAAAAGGTAA+AGG 0.485853 8:-78652119 None:intergenic
TGGTTCTTTATCACACAGAC+TGG 0.488492 8:+78652183 MsG0880046815.01.T01:CDS
GACTTGGGAGATTAATGAGT+TGG 0.489456 8:+78655061 MsG0880046815.01.T01:three_prime_UTR
AGAAGAGGAAGGAAGAGTAG+TGG 0.496307 8:-78651072 None:intergenic
AGAGACTGACGAATATGAAC+AGG 0.498916 8:+78654854 MsG0880046815.01.T01:three_prime_UTR
GTTGAGCGTAATTTCAAGGC+GGG 0.504366 8:-78650974 None:intergenic
AGAAACTATTAGAAAAGACT+TGG 0.520556 8:+78655045 MsG0880046815.01.T01:three_prime_UTR
GCTAACCATGTAACCTGCAT+AGG 0.537876 8:-78652158 None:intergenic
TGACGAATATGAACAGGAGC+TGG 0.540241 8:+78654860 MsG0880046815.01.T01:three_prime_UTR
CTGCTTTAGTCAAAGAATGC+TGG 0.545820 8:+78653184 MsG0880046815.01.T01:CDS
ACGCTCAACTTTACCTTCGA+CGG 0.545824 8:+78650988 MsG0880046815.01.T01:five_prime_UTR
ACTTATAGCTCAATTCGCTC+AGG 0.549263 8:+78651327 MsG0880046815.01.T01:CDS
GCTCCAATTCTCTCTTCACC+TGG 0.552330 8:+78651110 MsG0880046815.01.T01:five_prime_UTR
TGAGCGTAATTTCAAGGCGG+GGG 0.557217 8:-78650972 None:intergenic
GGAGTTGATAGGAGATGTTG+TGG 0.567493 8:+78654769 MsG0880046815.01.T01:three_prime_UTR
ATAGATTGCACGTGAGGCAG+AGG 0.568719 8:+78655002 MsG0880046815.01.T01:three_prime_UTR
GAAACTATTAGAAAAGACTT+GGG 0.573417 8:+78655046 MsG0880046815.01.T01:three_prime_UTR
CTTCTGGCCGCTGCATGAAG+AGG 0.583355 8:-78651016 None:intergenic
GCAGGTTACATGGTTAGCAA+TGG 0.586970 8:+78652163 MsG0880046815.01.T01:CDS
AGGGATTTCGGTGATAAATG+AGG 0.590793 8:-78650938 None:intergenic
TAATCAGAACTGCATATCCC+AGG 0.594131 8:-78651915 None:intergenic
GAGTCTCGTAAAGACAGTAC+AGG 0.599929 8:-78652219 None:intergenic
AGCGGCCAGAAGTGCTCACG+CGG 0.604475 8:+78651027 MsG0880046815.01.T01:five_prime_UTR
TGAAGAGGTAGCGCCGTCGA+AGG 0.606082 8:-78651001 None:intergenic
TCTTGTATAGATTGCACGTG+AGG 0.607256 8:+78654996 MsG0880046815.01.T01:three_prime_UTR
GAGTTGGTTTACTGTTTCTG+TGG 0.619359 8:-78653255 None:intergenic
TTGAGCGTAATTTCAAGGCG+GGG 0.624147 8:-78650973 None:intergenic
TCTTTATCACACAGACTGGG+TGG 0.628310 8:+78652187 MsG0880046815.01.T01:CDS
GATATATAGACCTTAAAAGG+AGG 0.637294 8:-78652253 None:intergenic
GTATAGGTACATGTTTACCT+GGG 0.641761 8:+78651898 MsG0880046815.01.T01:intron
AATTGAAAACTATGTCCGCA+TGG 0.644237 8:+78653458 MsG0880046815.01.T01:three_prime_UTR
GGCGCTACCTCTTCATGCAG+CGG 0.646406 8:+78651009 MsG0880046815.01.T01:five_prime_UTR
GAATACGGATAATTTCAAGA+AGG 0.655387 8:+78651294 MsG0880046815.01.T01:CDS
CCAACTCGAACAATTACAGA+AGG 0.659059 8:+78653271 MsG0880046815.01.T01:three_prime_UTR
AAAGCACATATCAGAAGACA+AGG 0.660763 8:+78654748 MsG0880046815.01.T01:three_prime_UTR
GGTTCTTTATCACACAGACT+GGG 0.662797 8:+78652184 MsG0880046815.01.T01:CDS
AATGTCAGCTGAATATGCTG+AGG 0.679138 8:+78653874 MsG0880046815.01.T01:three_prime_UTR
AGTTGAGCGTAATTTCAAGG+CGG 0.699647 8:-78650975 None:intergenic
GGAAACTTACAAGGTCCATG+CGG 0.759110 8:-78653473 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTCTTAATATGTTATT+CGG + Chr8:78652862-78652881 MsG0880046815.01.T01:intron 10.0%
!!! AACATTTTGTTTTTTATTTA+TGG + Chr8:78654164-78654183 MsG0880046815.01.T01:intron 10.0%
!! AAATTATAACTGAAACTATT+AGG + Chr8:78654360-78654379 MsG0880046815.01.T01:intron 15.0%
!! AGTTTCTATATTGAAATAAA+AGG - Chr8:78652128-78652147 None:intergenic 15.0%
!! ATTATTCAATATTCATATTG+CGG + Chr8:78652606-78652625 MsG0880046815.01.T01:intron 15.0%
!! ATTGTTAATAATCGAATAAT+AGG - Chr8:78651725-78651744 None:intergenic 15.0%
!! TATATTGAAATAAAAGGTAA+AGG - Chr8:78652122-78652141 None:intergenic 15.0%
!! TTCTATCATAAACTATATTT+GGG - Chr8:78655088-78655107 None:intergenic 15.0%
!!! ATTTGATTGATAATTAGTTA+AGG + Chr8:78652970-78652989 MsG0880046815.01.T01:intron 15.0%
!!! TATTATTTTTTTAGTTAGGA+TGG + Chr8:78652533-78652552 MsG0880046815.01.T01:intron 15.0%
!!! TATTTTAAAAACTGGTTAAA+AGG + Chr8:78651604-78651623 MsG0880046815.01.T01:intron 15.0%
!!! TTTTTATTCGATTTTTGTAT+AGG - Chr8:78654103-78654122 None:intergenic 15.0%
!!! TTTTTTTCATCAAATCAATT+TGG - Chr8:78654514-78654533 None:intergenic 15.0%
!! ATGTCCATATTAAACTTATT+GGG + Chr8:78653588-78653607 MsG0880046815.01.T01:intron 20.0%
!! ATTCAAACAAATAAGTTGTT+GGG - Chr8:78653400-78653419 None:intergenic 20.0%
!! GCAATATGAATATTGAATAA+TGG - Chr8:78652607-78652626 None:intergenic 20.0%
!! GTTCTATCATAAACTATATT+TGG - Chr8:78655089-78655108 None:intergenic 20.0%
!! GTTTATAAAATGTTTGTTTC+TGG - Chr8:78654821-78654840 None:intergenic 20.0%
!! TAGTTTATGATAGAACATTA+TGG + Chr8:78655093-78655112 MsG0880046815.01.T01:three_prime_UTR 20.0%
!! TCATTTGTATACTATATACA+CGG + Chr8:78653926-78653945 MsG0880046815.01.T01:intron 20.0%
!! TTAAGAAAGAAAAAAAGACA+AGG - Chr8:78654695-78654714 None:intergenic 20.0%
!! TTATTTATGGTAAGACTAAT+GGG + Chr8:78654177-78654196 MsG0880046815.01.T01:intron 20.0%
!! TTTATTTATGGTAAGACTAA+TGG + Chr8:78654176-78654195 MsG0880046815.01.T01:intron 20.0%
!!! AAAACAATTCTAAAGCTATA+TGG - Chr8:78651449-78651468 None:intergenic 20.0%
!!! AATTTTTTTCTGGGTAATTT+GGG + Chr8:78651981-78652000 MsG0880046815.01.T01:intron 20.0%
!!! ATAACGAATAAATCATTTTG+TGG - Chr8:78653511-78653530 None:intergenic 20.0%
!!! ATATAATGTCCATTTTGTTA+TGG + Chr8:78651489-78651508 MsG0880046815.01.T01:intron 20.0%
!!! ATATAGCTTTAGAATTGTTT+TGG + Chr8:78651448-78651467 MsG0880046815.01.T01:intron 20.0%
!!! ATTTTATAAACAAACAGGAT+TGG + Chr8:78654830-78654849 MsG0880046815.01.T01:three_prime_UTR 20.0%
!!! CAAACATTTTATAAACAAAC+AGG + Chr8:78654825-78654844 MsG0880046815.01.T01:three_prime_UTR 20.0%
!!! CAATTTTTGTTGTTCAATTT+TGG + Chr8:78651745-78651764 MsG0880046815.01.T01:intron 20.0%
!!! GTTTCAGTTATAATTTTTCT+AGG - Chr8:78654356-78654375 None:intergenic 20.0%
!!! TTTTATAAACAAACAGGATT+GGG + Chr8:78654831-78654850 MsG0880046815.01.T01:three_prime_UTR 20.0%
! AAGTTCATGAGAAAAAATTG+GGG - Chr8:78652655-78652674 None:intergenic 25.0%
! AGAAACTATTAGAAAAGACT+TGG + Chr8:78655045-78655064 MsG0880046815.01.T01:three_prime_UTR 25.0%
! ATACATAATACACTTATCAC+AGG - Chr8:78653727-78653746 None:intergenic 25.0%
! ATATTGAATAATGGCTAGAT+TGG - Chr8:78652598-78652617 None:intergenic 25.0%
! ATGATAAGCTATGTTTATTG+AGG + Chr8:78654477-78654496 MsG0880046815.01.T01:intron 25.0%
! ATGTCGTTATATTCAAAATG+AGG - Chr8:78651381-78651400 None:intergenic 25.0%
! ATTTCACCAATAAAATTCCA+TGG - Chr8:78652733-78652752 None:intergenic 25.0%
! CAAAAACAGTATCATAACTA+CGG + Chr8:78651523-78651542 MsG0880046815.01.T01:intron 25.0%
! CATATTAAACTTATTGGGTT+GGG + Chr8:78653593-78653612 MsG0880046815.01.T01:intron 25.0%
! CATTCAAACAAATAAGTTGT+TGG - Chr8:78653401-78653420 None:intergenic 25.0%
! GAAACTATTAGAAAAGACTT+GGG + Chr8:78655046-78655065 MsG0880046815.01.T01:three_prime_UTR 25.0%
! GAAGTTCATGAGAAAAAATT+GGG - Chr8:78652656-78652675 None:intergenic 25.0%
! GATGTCCATATTAAACTTAT+TGG + Chr8:78653587-78653606 MsG0880046815.01.T01:intron 25.0%
! GTCAAAAAATATCAATAACC+AGG - Chr8:78652761-78652780 None:intergenic 25.0%
! TATTTATGGTAAGACTAATG+GGG + Chr8:78654178-78654197 MsG0880046815.01.T01:intron 25.0%
! TGAAGTTCATGAGAAAAAAT+TGG - Chr8:78652657-78652676 None:intergenic 25.0%
! TTGTACAATGAAAATATGTC+TGG + Chr8:78652496-78652515 MsG0880046815.01.T01:intron 25.0%
! TTTACCCTAGTTAAAAATGA+AGG - Chr8:78652946-78652965 None:intergenic 25.0%
! TTTCAAATCATGTTGCATTT+AGG - Chr8:78651556-78651575 None:intergenic 25.0%
!! AAGGAACATTTTCTATATCT+TGG + Chr8:78653956-78653975 MsG0880046815.01.T01:intron 25.0%
!! ATATTAAACTTATTGGGTTG+GGG + Chr8:78653594-78653613 MsG0880046815.01.T01:intron 25.0%
!! CGTAACATAAGCTTTAATTA+TGG + Chr8:78652356-78652375 MsG0880046815.01.T01:intron 25.0%
!! TTCTATCGTAAACCATATTT+TGG - Chr8:78654412-78654431 None:intergenic 25.0%
!!! AATTCTTGTTATTGATGCAA+AGG + Chr8:78653140-78653159 MsG0880046815.01.T01:CDS 25.0%
!!! AATTGATGATTTTGAAGAAG+AGG - Chr8:78650915-78650934 None:intergenic 25.0%
!!! AGTTCTAGTTTCTTGTTTAT+AGG + Chr8:78654949-78654968 MsG0880046815.01.T01:three_prime_UTR 25.0%
!!! ATGTTCCTTCATTTTTAACT+AGG + Chr8:78652938-78652957 MsG0880046815.01.T01:intron 25.0%
!!! ATGTTTCTATTTTCTGTTTG+TGG + Chr8:78652418-78652437 MsG0880046815.01.T01:intron 25.0%
!!! GAATTTTTTTCTGGGTAATT+TGG + Chr8:78651980-78651999 MsG0880046815.01.T01:intron 25.0%
!!! GGTAAAGCTATTTTAAAAAC+TGG + Chr8:78651596-78651615 MsG0880046815.01.T01:intron 25.0%
!!! GTTCTAGTTTCTTGTTTATA+GGG + Chr8:78654950-78654969 MsG0880046815.01.T01:three_prime_UTR 25.0%
!!! TAGAAAAGATGATGGAAAAT+AGG + Chr8:78654237-78654256 MsG0880046815.01.T01:intron 25.0%
!!! TGGTTTTGAATAAAACAAAC+TGG - Chr8:78651678-78651697 None:intergenic 25.0%
!!! TGTGTTCTGAATTTTTTTCT+GGG + Chr8:78651972-78651991 MsG0880046815.01.T01:intron 25.0%
!!! TGTTCCTTCATTTTTAACTA+GGG + Chr8:78652939-78652958 MsG0880046815.01.T01:intron 25.0%
!!! TTCGTTATCTTTTTCAACTA+TGG + Chr8:78653523-78653542 MsG0880046815.01.T01:intron 25.0%
!!! TTGTGTTCTGAATTTTTTTC+TGG + Chr8:78651971-78651990 MsG0880046815.01.T01:intron 25.0%
AACTGAAAAATGTCATACCA+AGG - Chr8:78652279-78652298 None:intergenic 30.0%
AATATTCACCTTCTCTTCTT+CGG + Chr8:78651134-78651153 MsG0880046815.01.T01:intron 30.0%
ACTGAAAAATGTCATACCAA+GGG - Chr8:78652278-78652297 None:intergenic 30.0%
AGGGATATATAGACCTTAAA+AGG - Chr8:78652259-78652278 None:intergenic 30.0%
ATACAGAGATTGCATAAAGA+AGG - Chr8:78651872-78651891 None:intergenic 30.0%
ATGCAATTATTCTTGTTCGA+AGG + Chr8:78652313-78652332 MsG0880046815.01.T01:intron 30.0%
ATGGTTTACGATAGAACATT+AGG + Chr8:78654416-78654435 MsG0880046815.01.T01:intron 30.0%
ATTCTTTCACTTACATTTGG+TGG - Chr8:78654134-78654153 None:intergenic 30.0%
CACATTCTTTCACTTACATT+TGG - Chr8:78654137-78654156 None:intergenic 30.0%
CCAACCCAATAAGTTTAATA+TGG - Chr8:78653595-78653614 None:intergenic 30.0%
CCATATTAAACTTATTGGGT+TGG + Chr8:78653592-78653611 MsG0880046815.01.T01:intron 30.0%
CTTGAAATTATCCGTATTCA+TGG - Chr8:78651293-78651312 None:intergenic 30.0%
GAATACGGATAATTTCAAGA+AGG + Chr8:78651294-78651313 MsG0880046815.01.T01:CDS 30.0%
GATATATAGACCTTAAAAGG+AGG - Chr8:78652256-78652275 None:intergenic 30.0%
GGCAAAAATGTAGCTATTAA+AGG + Chr8:78653895-78653914 MsG0880046815.01.T01:three_prime_UTR 30.0%
GTCAGAAATCAACATTAGTT+TGG - Chr8:78654066-78654085 None:intergenic 30.0%
TAAAGAAGCAAGCAGTATAT+TGG + Chr8:78654712-78654731 MsG0880046815.01.T01:intron 30.0%
TAAAGTTGAGCGTAATTTCA+AGG - Chr8:78650981-78651000 None:intergenic 30.0%
TAACCTGCATAGGAATATAA+AGG - Chr8:78652151-78652170 None:intergenic 30.0%
TCGAATAATAGGAAACAAGT+AGG - Chr8:78651714-78651733 None:intergenic 30.0%
TGAAACTATTAGGAAAGACT+AGG + Chr8:78654370-78654389 MsG0880046815.01.T01:intron 30.0%
TGGTTTACGATAGAACATTA+GGG + Chr8:78654417-78654436 MsG0880046815.01.T01:intron 30.0%
TTCAGCATACTAATCAGTAT+TGG + Chr8:78653665-78653684 MsG0880046815.01.T01:intron 30.0%
TTCGAACAAGAATAATTGCA+TGG - Chr8:78652314-78652333 None:intergenic 30.0%
TTCTTTATGCAATCTCTGTA+TGG + Chr8:78651871-78651890 MsG0880046815.01.T01:intron 30.0%
TTGACCATTGTCTAAATCAA+TGG + Chr8:78654665-78654684 MsG0880046815.01.T01:intron 30.0%
TTTCATATGCAGCTTGAATA+CGG - Chr8:78653298-78653317 None:intergenic 30.0%
! ACATTTTCTTCAGCAAATTG+AGG - Chr8:78653859-78653878 None:intergenic 30.0%
! CTGATATGTGCTTTATGTTT+TGG - Chr8:78654742-78654761 None:intergenic 30.0%
! CTGATGATGCTTTCTAATAT+GGG + Chr8:78652704-78652723 MsG0880046815.01.T01:intron 30.0%
! GTCATAACATAATGATGATG+TGG + Chr8:78653034-78653053 MsG0880046815.01.T01:intron 30.0%
! TAATGAGTTGGACCAAAATA+TGG + Chr8:78654397-78654416 MsG0880046815.01.T01:intron 30.0%
! TTTAAGGTCTATATATCCCT+TGG + Chr8:78652259-78652278 MsG0880046815.01.T01:CDS 30.0%
! TTTTCTGTTTGTGGTTTCAT+AGG + Chr8:78652427-78652446 MsG0880046815.01.T01:intron 30.0%
!! TATTAAACTTATTGGGTTGG+GGG + Chr8:78653595-78653614 MsG0880046815.01.T01:intron 30.0%
!! TTAGAGGTACCATAACAAAA+TGG - Chr8:78651501-78651520 None:intergenic 30.0%
!!! GTTCAATTTTGGTTAATGAC+AGG + Chr8:78651756-78651775 MsG0880046815.01.T01:intron 30.0%
!!! GTTTCTCTTCTAGTTTTTCT+AGG - Chr8:78655031-78655050 None:intergenic 30.0%
!!! TGATACTGTTTTTGCTTTAG+AGG - Chr8:78651517-78651536 None:intergenic 30.0%
AAAGCACATATCAGAAGACA+AGG + Chr8:78654748-78654767 MsG0880046815.01.T01:three_prime_UTR 35.0%
AACAAACTGGTACAGCTAAA+AGG - Chr8:78651665-78651684 None:intergenic 35.0%
AAGAGAAGGTGAATATTACC+AGG - Chr8:78651131-78651150 None:intergenic 35.0%
AATTGAAAACTATGTCCGCA+TGG + Chr8:78653458-78653477 MsG0880046815.01.T01:three_prime_UTR 35.0%
ACAATGAAGCTTGACTCATT+AGG - Chr8:78652892-78652911 None:intergenic 35.0%
ACAGGATGAGTCAAAAACTT+TGG + Chr8:78651774-78651793 MsG0880046815.01.T01:intron 35.0%
ACCATTGTCTAAATCAATGG+TGG + Chr8:78654668-78654687 MsG0880046815.01.T01:intron 35.0%
ACCTAGAGTAGAAAAGATGA+TGG + Chr8:78654229-78654248 MsG0880046815.01.T01:intron 35.0%
ACCTTAAAAGGAGGTTTGAA+TGG - Chr8:78652247-78652266 None:intergenic 35.0%
ACTCCTTTATATTCCTATGC+AGG + Chr8:78652145-78652164 MsG0880046815.01.T01:CDS 35.0%
AGACTAGGAGATTAATGAGT+TGG + Chr8:78654385-78654404 MsG0880046815.01.T01:intron 35.0%
AGATTTCTCTGCTGCTAATT+AGG + Chr8:78651259-78651278 MsG0880046815.01.T01:intron 35.0%
AGGAGAAGCTTCATAAATGT+AGG - Chr8:78651836-78651855 None:intergenic 35.0%
ATATTCCTATGCAGGTTACA+TGG + Chr8:78652153-78652172 MsG0880046815.01.T01:CDS 35.0%
CAATGAAGCTTGACTCATTA+GGG - Chr8:78652891-78652910 None:intergenic 35.0%
GAAAAAAAACCAGTGAGAAG+AGG - Chr8:78651090-78651109 None:intergenic 35.0%
GAAAATAGGCTTAGTGGTTT+GGG + Chr8:78654251-78654270 MsG0880046815.01.T01:intron 35.0%
GATAGAACATTAGGGGATAA+AGG + Chr8:78654425-78654444 MsG0880046815.01.T01:intron 35.0%
GATTTCTCTGCTGCTAATTA+GGG + Chr8:78651260-78651279 MsG0880046815.01.T01:intron 35.0%
GCTATGTTTATTGAGGTTTG+TGG + Chr8:78654484-78654503 MsG0880046815.01.T01:intron 35.0%
GGTAAACATGTACCTATACA+AGG - Chr8:78651897-78651916 None:intergenic 35.0%
GGTTTACGATAGAACATTAG+GGG + Chr8:78654418-78654437 MsG0880046815.01.T01:intron 35.0%
GTATAGGTACATGTTTACCT+GGG + Chr8:78651898-78651917 MsG0880046815.01.T01:intron 35.0%
GTATGTAGATAGAAAGGAGA+GGG - Chr8:78653819-78653838 None:intergenic 35.0%
GTCAGCTTAACATTAGAAGA+TGG + Chr8:78653555-78653574 MsG0880046815.01.T01:intron 35.0%
TAATAGGAAACAAGTAGGAC+TGG - Chr8:78651709-78651728 None:intergenic 35.0%
TAGTCCTCAAAGAAAAGTTC+AGG - Chr8:78654587-78654606 None:intergenic 35.0%
TCCTTTCTATCTACATACCA+GGG + Chr8:78653821-78653840 MsG0880046815.01.T01:intron 35.0%
TGGCTGATATGAAAAGAGTA+TGG + Chr8:78651794-78651813 MsG0880046815.01.T01:intron 35.0%
TGTATAGGTACATGTTTACC+TGG + Chr8:78651897-78651916 MsG0880046815.01.T01:intron 35.0%
TTATTGGTGAAATGTCTTCC+TGG + Chr8:78652740-78652759 MsG0880046815.01.T01:intron 35.0%
TTCATATGCAGCTTGAATAC+GGG - Chr8:78653297-78653316 None:intergenic 35.0%
TTCTCATGAACTTCATTGTC+AGG + Chr8:78652662-78652681 MsG0880046815.01.T01:intron 35.0%
TTGTCAGGTGAAGATATTGT+AGG + Chr8:78652677-78652696 MsG0880046815.01.T01:intron 35.0%
TTGTTTGAATGTGTTCCATG+TGG + Chr8:78653410-78653429 MsG0880046815.01.T01:intron 35.0%
! AACTCCTGAACTTTTCTTTG+AGG + Chr8:78654580-78654599 MsG0880046815.01.T01:intron 35.0%
! ACCATTCAAACCTCCTTTTA+AGG + Chr8:78652243-78652262 MsG0880046815.01.T01:CDS 35.0%
! AGCTTCTCCTTCTAAAAACT+TGG + Chr8:78651846-78651865 MsG0880046815.01.T01:intron 35.0%
! ATGATGGAAAATAGGCTTAG+TGG + Chr8:78654245-78654264 MsG0880046815.01.T01:intron 35.0%
! ATGCGGACATAGTTTTCAAT+TGG - Chr8:78653459-78653478 None:intergenic 35.0%
! ATTTTGTGGTCACAAAGAAC+CGG - Chr8:78653497-78653516 None:intergenic 35.0%
! CTCAATTTGCATGTTTCTAC+AGG + Chr8:78653099-78653118 MsG0880046815.01.T01:intron 35.0%
! GCTGATGATGCTTTCTAATA+TGG + Chr8:78652703-78652722 MsG0880046815.01.T01:intron 35.0%
! TCCATCATCTTTTCTACTCT+AGG - Chr8:78654233-78654252 None:intergenic 35.0%
! TGATTTGAAACGAGACTGTT+TGG + Chr8:78651566-78651585 MsG0880046815.01.T01:intron 35.0%
!! AAGAAGGCCAAGTTTTTAGA+AGG - Chr8:78651856-78651875 None:intergenic 35.0%
!! AAGTAGGACTGGTTGAAAAA+TGG - Chr8:78651698-78651717 None:intergenic 35.0%
!! ACCACCATTGATTTAGACAA+TGG - Chr8:78654672-78654691 None:intergenic 35.0%
!! ATTAAACTTATTGGGTTGGG+GGG + Chr8:78653596-78653615 MsG0880046815.01.T01:intron 35.0%
!! ATTCATTTCTAGCGAATGAC+AGG - Chr8:78654021-78654040 None:intergenic 35.0%
!! TTCATTTCTAGCGAATGACA+GGG - Chr8:78654020-78654039 None:intergenic 35.0%
!!! AGAAGACCTAGTTTTGTAGT+AGG + Chr8:78654283-78654302 MsG0880046815.01.T01:intron 35.0%
AAAAACCAGTGAGAAGAGGA+AGG - Chr8:78651086-78651105 None:intergenic 40.0%
AAAGACAGTACAGGCAATAC+AGG - Chr8:78652213-78652232 None:intergenic 40.0%
AAATCTGTAGCAGGAAGTTG+TGG - Chr8:78651245-78651264 None:intergenic 40.0%
AACATTAGGGGATAAAGGCT+TGG + Chr8:78654430-78654449 MsG0880046815.01.T01:intron 40.0%
AATGTCAGCTGAATATGCTG+AGG + Chr8:78653874-78653893 MsG0880046815.01.T01:three_prime_UTR 40.0%
ACAGGGAAAACACAAAGACT+TGG - Chr8:78654003-78654022 None:intergenic 40.0%
ACTTATAGCTCAATTCGCTC+AGG + Chr8:78651327-78651346 MsG0880046815.01.T01:CDS 40.0%
AGAGACTGACGAATATGAAC+AGG + Chr8:78654854-78654873 MsG0880046815.01.T01:three_prime_UTR 40.0%
AGGGATTTCGGTGATAAATG+AGG - Chr8:78650941-78650960 None:intergenic 40.0%
AGGGTTCTTCACCATGAATA+CGG + Chr8:78651279-78651298 MsG0880046815.01.T01:exon 40.0%
AGTTGAGCGTAATTTCAAGG+CGG - Chr8:78650978-78650997 None:intergenic 40.0%
CAAAGAACCGGAAACTTACA+AGG - Chr8:78653485-78653504 None:intergenic 40.0%
CAGCATTCTTTGACTAAAGC+AGG - Chr8:78653186-78653205 None:intergenic 40.0%
CCAACTCGAACAATTACAGA+AGG + Chr8:78653271-78653290 MsG0880046815.01.T01:three_prime_UTR 40.0%
CCTTCTGTAATTGTTCGAGT+TGG - Chr8:78653274-78653293 None:intergenic 40.0%
CTAAGTCAACAGCACCAAAA+AGG - Chr8:78653223-78653242 None:intergenic 40.0%
CTATATACACGGCTTGAGAA+AGG + Chr8:78653937-78653956 MsG0880046815.01.T01:intron 40.0%
CTCCTTTCTATCTACATACC+AGG + Chr8:78653820-78653839 MsG0880046815.01.T01:intron 40.0%
CTGCTTTAGTCAAAGAATGC+TGG + Chr8:78653184-78653203 MsG0880046815.01.T01:CDS 40.0%
CTTTCTAATATGGGTGTCCA+TGG + Chr8:78652713-78652732 MsG0880046815.01.T01:intron 40.0%
GACAACACGACAAAGAAAGA+AGG - Chr8:78653362-78653381 None:intergenic 40.0%
GACTTGGGAGATTAATGAGT+TGG + Chr8:78655061-78655080 MsG0880046815.01.T01:three_prime_UTR 40.0%
GGAAAATAGGCTTAGTGGTT+TGG + Chr8:78654250-78654269 MsG0880046815.01.T01:intron 40.0%
GGTATGTAGATAGAAAGGAG+AGG - Chr8:78653820-78653839 None:intergenic 40.0%
GGTTCTTTATCACACAGACT+GGG + Chr8:78652184-78652203 MsG0880046815.01.T01:CDS 40.0%
TAATCAGAACTGCATATCCC+AGG - Chr8:78651918-78651937 None:intergenic 40.0%
TACACTTATCACAGGCTGAT+TGG - Chr8:78653719-78653738 None:intergenic 40.0%
TACCCTCCTACTACAAAACT+AGG - Chr8:78654292-78654311 None:intergenic 40.0%
TACTTGAAACCCATCAAGCT+CGG - Chr8:78653639-78653658 None:intergenic 40.0%
TCAAGCTTCATTGTTCCAAG+TGG + Chr8:78652898-78652917 MsG0880046815.01.T01:intron 40.0%
TCCCTGGTATGTAGATAGAA+AGG - Chr8:78653825-78653844 None:intergenic 40.0%
TCTATCTACATACCAGGGAT+TGG + Chr8:78653826-78653845 MsG0880046815.01.T01:intron 40.0%
TCTTGTATAGATTGCACGTG+AGG + Chr8:78654996-78655015 MsG0880046815.01.T01:three_prime_UTR 40.0%
TGGAGAAGATTGCTGATGAT+TGG + Chr8:78654789-78654808 MsG0880046815.01.T01:three_prime_UTR 40.0%
TGGTTCTTTATCACACAGAC+TGG + Chr8:78652183-78652202 MsG0880046815.01.T01:CDS 40.0%
TTACCAGGTGAAGAGAGAAT+TGG - Chr8:78651116-78651135 None:intergenic 40.0%
TTTGACACTGCACATGCATT+TGG + Chr8:78652775-78652794 MsG0880046815.01.T01:intron 40.0%
! ACGAGACTGTTTGGTTGTTT+TGG + Chr8:78651575-78651594 MsG0880046815.01.T01:intron 40.0%
! GAAAGTAGCACGTTCCTTTT+TGG + Chr8:78653206-78653225 MsG0880046815.01.T01:CDS 40.0%
! GATGCAAAGGCACATGATAT+CGG + Chr8:78653153-78653172 MsG0880046815.01.T01:CDS 40.0%
! GGGTGTCCATGGAATTTTAT+TGG + Chr8:78652724-78652743 MsG0880046815.01.T01:intron 40.0%
! TCAGAAGACAAGGAGTTGAT+AGG + Chr8:78654758-78654777 MsG0880046815.01.T01:three_prime_UTR 40.0%
!! ATCTCTGTATGGCCTTGTAT+AGG + Chr8:78651882-78651901 MsG0880046815.01.T01:intron 40.0%
!! CACGTTCTTCTTGCTTTTCA+AGG + Chr8:78651190-78651209 MsG0880046815.01.T01:intron 40.0%
!! GAGTTGGTTTACTGTTTCTG+TGG - Chr8:78653258-78653277 None:intergenic 40.0%
!!! AGACCTAGTTTTGTAGTAGG+AGG + Chr8:78654286-78654305 MsG0880046815.01.T01:intron 40.0%
!!! CGTTGTTGTGTTTTAAGGAC+AGG + Chr8:78652629-78652648 MsG0880046815.01.T01:intron 40.0%
!!! GACCTAGTTTTGTAGTAGGA+GGG + Chr8:78654287-78654306 MsG0880046815.01.T01:intron 40.0%
!!! TTTTGGTGCTGTTGACTTAG+CGG + Chr8:78653223-78653242 MsG0880046815.01.T01:CDS 40.0%
ACACTGCACATGCATTTGGT+AGG + Chr8:78652779-78652798 MsG0880046815.01.T01:intron 45.0%
ACGCTCAACTTTACCTTCGA+CGG + Chr8:78650988-78651007 MsG0880046815.01.T01:five_prime_UTR 45.0%
AGAAGAGGAAGGAAGAGTAG+TGG - Chr8:78651075-78651094 None:intergenic 45.0%
ATGAGCAACCGAAGAAGAGA+AGG - Chr8:78651145-78651164 None:intergenic 45.0%
ATGTGTTCCATGTGGATGAC+AGG + Chr8:78653418-78653437 MsG0880046815.01.T01:intron 45.0%
CAAACAACCTGTCATCCACA+TGG - Chr8:78653428-78653447 None:intergenic 45.0%
CACTGCACATGCATTTGGTA+GGG + Chr8:78652780-78652799 MsG0880046815.01.T01:intron 45.0%
GAGTCTCGTAAAGACAGTAC+AGG - Chr8:78652222-78652241 None:intergenic 45.0%
GCAGGTTACATGGTTAGCAA+TGG + Chr8:78652163-78652182 MsG0880046815.01.T01:CDS 45.0%
GCATGACTGTATAGACCACT+TGG - Chr8:78652916-78652935 None:intergenic 45.0%
GCATGGACCTTGTAAGTTTC+CGG + Chr8:78653475-78653494 MsG0880046815.01.T01:intron 45.0%
GCTAACCATGTAACCTGCAT+AGG - Chr8:78652161-78652180 None:intergenic 45.0%
GGAAACTTACAAGGTCCATG+CGG - Chr8:78653476-78653495 None:intergenic 45.0%
GTAGCAGGAAGTTGTGGAAA+AGG - Chr8:78651239-78651258 None:intergenic 45.0%
GTTGAGCGTAATTTCAAGGC+GGG - Chr8:78650977-78650996 None:intergenic 45.0%
TAGTAGGAGGGTAGATCAGA+TGG + Chr8:78654299-78654318 MsG0880046815.01.T01:intron 45.0%
TCTTTATCACACAGACTGGG+TGG + Chr8:78652187-78652206 MsG0880046815.01.T01:CDS 45.0%
TGACGAATATGAACAGGAGC+TGG + Chr8:78654860-78654879 MsG0880046815.01.T01:three_prime_UTR 45.0%
TTGAGCGTAATTTCAAGGCG+GGG - Chr8:78650976-78650995 None:intergenic 45.0%
! TGCGGCGTTGTTGTGTTTTA+AGG + Chr8:78652624-78652643 MsG0880046815.01.T01:intron 45.0%
!! GGAGTTGATAGGAGATGTTG+TGG + Chr8:78654769-78654788 MsG0880046815.01.T01:three_prime_UTR 45.0%
!!! TTAATATTATTTTTTTAGTT+AGG + Chr8:78652529-78652548 MsG0880046815.01.T01:intron 5.0%
AGGTCTTCCTCTGCCTCTAA+GGG - Chr8:78654336-78654355 None:intergenic 50.0%
AGTTAGACCCTTAGAGGCAG+AGG + Chr8:78654326-78654345 MsG0880046815.01.T01:intron 50.0%
ATAGATTGCACGTGAGGCAG+AGG + Chr8:78655002-78655021 MsG0880046815.01.T01:three_prime_UTR 50.0%
CTCTTCCTTCCTCTTCTCAC+TGG + Chr8:78651078-78651097 MsG0880046815.01.T01:five_prime_UTR 50.0%
GAGCGATTAGGGAGGGATTT+CGG - Chr8:78650953-78650972 None:intergenic 50.0%
GCAGCAGAGAAATCTGTAGC+AGG - Chr8:78651254-78651273 None:intergenic 50.0%
GCATTTGGTAGGGTAGATGC+TGG + Chr8:78652790-78652809 MsG0880046815.01.T01:intron 50.0%
GCTCCAATTCTCTCTTCACC+TGG + Chr8:78651110-78651129 MsG0880046815.01.T01:five_prime_UTR 50.0%
GGAGACTAACCGAGCTTGAT+GGG + Chr8:78653627-78653646 MsG0880046815.01.T01:intron 50.0%
GGAGAGAGTTAGACCCTTAG+AGG + Chr8:78654320-78654339 MsG0880046815.01.T01:intron 50.0%
TAGGTCTTCCTCTGCCTCTA+AGG - Chr8:78654337-78654356 None:intergenic 50.0%
TGAGCGTAATTTCAAGGCGG+GGG - Chr8:78650975-78650994 None:intergenic 50.0%
TGAGGTCTACTTCCAATCCC+TGG - Chr8:78653841-78653860 None:intergenic 50.0%
TGGAGACTAACCGAGCTTGA+TGG + Chr8:78653626-78653645 MsG0880046815.01.T01:intron 50.0%
!! TTGGGTTGGGGGGTATTTGT+TGG + Chr8:78653606-78653625 MsG0880046815.01.T01:intron 50.0%
CATCACCGCGTGAGCACTTC+TGG - Chr8:78651035-78651054 None:intergenic 60.0%
CTTCTGGCCGCTGCATGAAG+AGG - Chr8:78651019-78651038 None:intergenic 60.0%
GGCGCTACCTCTTCATGCAG+CGG + Chr8:78651009-78651028 MsG0880046815.01.T01:five_prime_UTR 60.0%
TCAAGGCGGGGGAGCGATTA+GGG - Chr8:78650964-78650983 None:intergenic 60.0%
TGAAGAGGTAGCGCCGTCGA+AGG - Chr8:78651004-78651023 None:intergenic 60.0%
TTCAAGGCGGGGGAGCGATT+AGG - Chr8:78650965-78650984 None:intergenic 60.0%
!! AGCGGCCAGAAGTGCTCACG+CGG + Chr8:78651027-78651046 MsG0880046815.01.T01:five_prime_UTR 65.0%
AGGCGGGGGAGCGATTAGGG+AGG - Chr8:78650961-78650980 None:intergenic 70.0%
GGCGGGGGAGCGATTAGGGA+GGG - Chr8:78650960-78650979 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 78650891 78655114 78650891 ID=MsG0880046815.01;Name=MsG0880046815.01
Chr8 mRNA 78650891 78655114 78650891 ID=MsG0880046815.01.T01;Parent=MsG0880046815.01;Name=MsG0880046815.01.T01;_AED=0.45;_eAED=0.48;_QI=272|0.75|0.66|1|0.5|0.33|9|595|149
Chr8 exon 78650891 78651131 78650891 ID=MsG0880046815.01.T01:exon:18844;Parent=MsG0880046815.01.T01
Chr8 exon 78651261 78651348 78651261 ID=MsG0880046815.01.T01:exon:18845;Parent=MsG0880046815.01.T01
Chr8 exon 78651778 78651810 78651778 ID=MsG0880046815.01.T01:exon:18846;Parent=MsG0880046815.01.T01
Chr8 exon 78651904 78651964 78651904 ID=MsG0880046815.01.T01:exon:18847;Parent=MsG0880046815.01.T01
Chr8 exon 78652104 78652280 78652104 ID=MsG0880046815.01.T01:exon:18848;Parent=MsG0880046815.01.T01
Chr8 exon 78653121 78653318 78653121 ID=MsG0880046815.01.T01:exon:18849;Parent=MsG0880046815.01.T01
Chr8 exon 78653440 78653485 78653440 ID=MsG0880046815.01.T01:exon:18850;Parent=MsG0880046815.01.T01
Chr8 exon 78653842 78653916 78653842 ID=MsG0880046815.01.T01:exon:18851;Parent=MsG0880046815.01.T01
Chr8 exon 78654717 78655114 78654717 ID=MsG0880046815.01.T01:exon:18852;Parent=MsG0880046815.01.T01
Chr8 five_prime_UTR 78650891 78651131 78650891 ID=MsG0880046815.01.T01:five_prime_utr;Parent=MsG0880046815.01.T01
Chr8 five_prime_UTR 78651261 78651291 78651261 ID=MsG0880046815.01.T01:five_prime_utr;Parent=MsG0880046815.01.T01
Chr8 CDS 78651292 78651348 78651292 ID=MsG0880046815.01.T01:cds;Parent=MsG0880046815.01.T01
Chr8 CDS 78651778 78651810 78651778 ID=MsG0880046815.01.T01:cds;Parent=MsG0880046815.01.T01
Chr8 CDS 78651904 78651964 78651904 ID=MsG0880046815.01.T01:cds;Parent=MsG0880046815.01.T01
Chr8 CDS 78652104 78652280 78652104 ID=MsG0880046815.01.T01:cds;Parent=MsG0880046815.01.T01
Chr8 CDS 78653121 78653242 78653121 ID=MsG0880046815.01.T01:cds;Parent=MsG0880046815.01.T01
Chr8 three_prime_UTR 78653243 78653318 78653243 ID=MsG0880046815.01.T01:three_prime_utr;Parent=MsG0880046815.01.T01
Chr8 three_prime_UTR 78653440 78653485 78653440 ID=MsG0880046815.01.T01:three_prime_utr;Parent=MsG0880046815.01.T01
Chr8 three_prime_UTR 78653842 78653916 78653842 ID=MsG0880046815.01.T01:three_prime_utr;Parent=MsG0880046815.01.T01
Chr8 three_prime_UTR 78654717 78655114 78654717 ID=MsG0880046815.01.T01:three_prime_utr;Parent=MsG0880046815.01.T01
Gene Sequence

>MsG0880046815.01.T01

ATGAATACGGATAATTTCAAGAAGGACATTGATGAACTTATAGCTCAATTCGCTCAGGATGAGTCAAAAACTTTGGCTGATATGAAAAGAGTACATGTTTACCTGGGATATGCAGTTCTGATTATAACTATTTTTATATCTATTAGTAAATATGTTTTACTTTTAGCCTTTACCTTTTATTTCAATATAGAAACTCCTTTATATTCCTATGCAGGTTACATGGTTAGCAATGGTTCTTTATCACACAGACTGGGTGGCCTGTATTGCCTGTACTGTCTTTACGAGACTCAACCATTCAAACCTCCTTTTAAGGTCTATATATCCCTTGGAGAGTTAAAGAATCTTAAAATTCTTGTTATTGATGCAAAGGCACATGATATCGGAGTTGTGCCTGCTTTAGTCAAAGAATGCTGGAAAGTAGCACGTTCCTTTTTGGTGCTGTTGACTTAG

Protein sequence

>MsG0880046815.01.T01

MNTDNFKKDIDELIAQFAQDESKTLADMKRVHVYLGYAVLIITIFISISKYVLLLAFTFYFNIETPLYSYAGYMVSNGSLSHRLGGLYCLYCLYETQPFKPPFKVYISLGELKNLKILVIDAKAHDIGVVPALVKECWKVARSFLVLLT*