Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401570 | XP_003599534.2 | 96.724 | 519 | 17 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401570 | sp|Q9FFZ1|PPH_ARATH | 66.368 | 446 | 142 | 5 | 66 | 506 | 30 | 472 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401570 | G7IZM0 | 96.724 | 519 | 17 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1028 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006470 | Msa0401570 | 0.812245 | 4.671083e-51 | -8.615850e-47 |
| Msa0021980 | Msa0401570 | 0.861113 | 1.288956e-63 | -8.615850e-47 |
| Msa0025690 | Msa0401570 | 0.813286 | 2.764846e-51 | -8.615850e-47 |
| Msa0053480 | Msa0401570 | 0.811743 | 6.010674e-51 | -8.615850e-47 |
| Msa0188500 | Msa0401570 | 0.800431 | 1.445614e-48 | -8.615850e-47 |
| Msa0200870 | Msa0401570 | 0.810011 | 1.424903e-50 | -8.615850e-47 |
| Msa0401570 | Msa0411000 | 0.819261 | 1.274436e-52 | -8.615850e-47 |
| Msa0401570 | Msa0448400 | 0.854539 | 1.150771e-61 | -8.615850e-47 |
| Msa0401570 | Msa0454940 | 0.807267 | 5.495822e-50 | -8.615850e-47 |
| Msa0401570 | Msa0455230 | 0.815245 | 1.020599e-51 | -8.615850e-47 |
| Msa0401570 | Msa0463960 | 0.804765 | 1.846503e-49 | -8.615850e-47 |
| Msa0401570 | Msa0496460 | 0.878887 | 1.951795e-69 | -8.615850e-47 |
| Msa0401570 | Msa0496470 | 0.846772 | 1.760575e-59 | -8.615850e-47 |
| Msa0401570 | Msa0496570 | 0.822689 | 2.071388e-53 | -8.615850e-47 |
| Msa0401570 | Msa0502910 | 0.822346 | 2.488697e-53 | -8.615850e-47 |
| Msa0401570 | Msa0546370 | 0.800607 | 1.331598e-48 | -8.615850e-47 |
| Msa0401570 | Msa0621170 | -0.810348 | 1.205108e-50 | -8.615850e-47 |
| Msa0401570 | Msa0664130 | 0.811558 | 6.594540e-51 | -8.615850e-47 |
| Msa0401570 | Msa0691140 | 0.817239 | 3.655002e-52 | -8.615850e-47 |
| Msa0401570 | Msa0722930 | 0.802409 | 5.688246e-49 | -8.615850e-47 |
| Msa0401570 | Msa0733400 | 0.809084 | 2.253231e-50 | -8.615850e-47 |
| Msa0401570 | Msa0738600 | 0.832853 | 7.456735e-56 | -8.615850e-47 |
| Msa0401570 | Msa0756410 | 0.838265 | 3.186416e-57 | -8.615850e-47 |
| Msa0401570 | Msa0807050 | 0.822957 | 1.793859e-53 | -8.615850e-47 |
| Msa0401570 | Msa0807980 | 0.849797 | 2.567733e-60 | -8.615850e-47 |
| Msa0401570 | Msa0811940 | 0.814910 | 1.210809e-51 | -8.615850e-47 |
| Msa0401570 | Msa0818950 | 0.831321 | 1.783220e-55 | -8.615850e-47 |
| Msa0401570 | Msa0819670 | 0.806818 | 6.839431e-50 | -8.615850e-47 |
| Msa0401570 | Msa0832990 | 0.823121 | 1.642886e-53 | -8.615850e-47 |
| Msa0401570 | Msa0834240 | 0.828349 | 9.447835e-55 | -8.615850e-47 |
| Msa0401570 | Msa0835580 | 0.841478 | 4.639261e-58 | -8.615850e-47 |
| Msa0401570 | Msa0861480 | 0.805006 | 1.644114e-49 | -8.615850e-47 |
| Msa0401570 | Msa0871310 | 0.823998 | 1.024145e-53 | -8.615850e-47 |
| Msa0401570 | Msa0883430 | 0.822206 | 2.681926e-53 | -8.615850e-47 |
| Msa0401570 | Msa0883660 | 0.837775 | 4.259916e-57 | -8.615850e-47 |
| Msa0401570 | Msa0883670 | 0.820259 | 7.540876e-53 | -8.615850e-47 |
| Msa0401570 | Msa0883690 | 0.817565 | 3.088122e-52 | -8.615850e-47 |
| Msa0401570 | Msa0883700 | 0.814267 | 1.680387e-51 | -8.615850e-47 |
| Msa0401570 | Msa0894500 | 0.851156 | 1.065973e-60 | -8.615850e-47 |
| Msa0401570 | Msa0912160 | 0.824831 | 6.521317e-54 | -8.615850e-47 |
| Msa0401570 | Msa0950410 | 0.804755 | 1.854788e-49 | -8.615850e-47 |
| Msa0401570 | Msa0984850 | 0.810233 | 1.276302e-50 | -8.615850e-47 |
| Msa0401570 | Msa1038110 | 0.802763 | 4.808318e-49 | -8.615850e-47 |
| Msa0401570 | Msa1041550 | 0.821980 | 3.026100e-53 | -8.615850e-47 |
| Msa0401570 | Msa1071310 | 0.821983 | 3.020007e-53 | -8.615850e-47 |
| Msa0401570 | Msa1080790 | 0.849070 | 4.092515e-60 | -8.615850e-47 |
| Msa0401570 | Msa1081530 | 0.840720 | 7.335740e-58 | -8.615850e-47 |
| Msa0401570 | Msa1118930 | 0.849065 | 4.105732e-60 | -8.615850e-47 |
| Msa0401570 | Msa1132950 | 0.823844 | 1.113144e-53 | -8.615850e-47 |
| Msa0401570 | Msa1166450 | 0.806305 | 8.773415e-50 | -8.615850e-47 |
| Msa0401570 | Msa1188820 | 0.851445 | 8.835324e-61 | -8.615850e-47 |
| Msa0401570 | Msa1194170 | -0.830214 | 3.331428e-55 | -8.615850e-47 |
| Msa0401570 | Msa1229770 | 0.819272 | 1.266810e-52 | -8.615850e-47 |
| Msa0401570 | Msa1232330 | 0.807139 | 5.847737e-50 | -8.615850e-47 |
| Msa0401570 | Msa1266570 | 0.802483 | 5.491189e-49 | -8.615850e-47 |
| Msa0401570 | Msa1275340 | 0.803227 | 3.855911e-49 | -8.615850e-47 |
| Msa0401570 | Msa1276070 | 0.816682 | 4.875363e-52 | -8.615850e-47 |
| Msa0401570 | Msa1287160 | 0.806306 | 8.770376e-50 | -8.615850e-47 |
| Msa0401570 | Msa1306700 | 0.803534 | 3.330592e-49 | -8.615850e-47 |
| Msa0401570 | Msa1311550 | 0.805622 | 1.221219e-49 | -8.615850e-47 |
| Msa0401570 | Msa1352060 | 0.814461 | 1.522896e-51 | -8.615850e-47 |
| Msa0401570 | Msa1357720 | 0.841779 | 3.862991e-58 | -8.615850e-47 |
| Msa0401570 | Msa1370630 | 0.864130 | 1.517348e-64 | -8.615850e-47 |
| Msa0401570 | Msa1407200 | 0.805039 | 1.618390e-49 | -8.615850e-47 |
| Msa0401570 | Msa1409760 | 0.803695 | 3.083743e-49 | -8.615850e-47 |
| Msa0401570 | Msa1427180 | 0.800950 | 1.132908e-48 | -8.615850e-47 |
| Msa0401570 | Msa1428560 | 0.816326 | 5.858986e-52 | -8.615850e-47 |
| Msa0401570 | Msa1445250 | 0.812201 | 4.775945e-51 | -8.615850e-47 |
| Msa0243820 | Msa0401570 | 0.815684 | 8.151213e-52 | -8.615850e-47 |
| Msa0264240 | Msa0401570 | 0.841219 | 5.425461e-58 | -8.615850e-47 |
| Msa0264420 | Msa0401570 | 0.803721 | 3.045008e-49 | -8.615850e-47 |
| Msa0282500 | Msa0401570 | 0.813415 | 2.589236e-51 | -8.615850e-47 |
| Msa0331740 | Msa0401570 | 0.803483 | 3.412130e-49 | -8.615850e-47 |
| Msa0339560 | Msa0401570 | 0.838338 | 3.051250e-57 | -8.615850e-47 |
| Msa0341520 | Msa0401570 | 0.809719 | 1.646867e-50 | -8.615850e-47 |
| Msa0343990 | Msa0401570 | 0.803988 | 2.679723e-49 | -8.615850e-47 |
| Msa0363460 | Msa0401570 | 0.814352 | 1.609756e-51 | -8.615850e-47 |
| Msa0364010 | Msa0401570 | 0.812909 | 3.343267e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401570 | MtrunA17_Chr3g0090521 | 96.724 | 519 | 17 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1028 |
| Msa0401570 | MtrunA17_Chr8g0372991 | 28.954 | 373 | 208 | 13 | 95 | 456 | 45 | 371 | 4.66e-31 | 124 |
| Msa0401570 | MtrunA17_Chr5g0423381 | 24.923 | 325 | 206 | 9 | 133 | 457 | 61 | 347 | 1.48e-24 | 104 |
| Msa0401570 | MtrunA17_Chr1g0188361 | 24.490 | 343 | 195 | 12 | 129 | 450 | 91 | 390 | 1.23e-20 | 94.0 |
| Msa0401570 | MtrunA17_Chr4g0018641 | 25.938 | 320 | 179 | 10 | 139 | 452 | 411 | 678 | 9.29e-20 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0401570 | AT5G13800.3 | 66.368 | 446 | 142 | 5 | 66 | 506 | 53 | 495 | 0.0 | 613 |
| Msa0401570 | AT5G13800.2 | 66.368 | 446 | 142 | 5 | 66 | 506 | 30 | 472 | 0.0 | 612 |
| Msa0401570 | AT5G13800.1 | 66.368 | 446 | 142 | 5 | 66 | 506 | 30 | 472 | 0.0 | 612 |
| Msa0401570 | AT5G13800.4 | 70.745 | 376 | 104 | 4 | 66 | 438 | 30 | 402 | 0.0 | 560 |
| Msa0401570 | AT4G36530.1 | 29.360 | 344 | 191 | 12 | 116 | 447 | 2 | 305 | 2.86e-27 | 112 |
| Msa0401570 | AT4G36530.2 | 30.063 | 316 | 172 | 12 | 138 | 447 | 90 | 362 | 3.93e-27 | 113 |
| Msa0401570 | AT5G19850.1 | 25.301 | 332 | 209 | 10 | 116 | 447 | 64 | 356 | 3.06e-23 | 101 |
| Msa0401570 | AT4G25290.1 | 26.444 | 329 | 177 | 11 | 133 | 453 | 402 | 673 | 4.24e-18 | 88.2 |
Find 128 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTTTCACTAAATTAA+AGG | 0.154201 | 3_2:-27922716 | Msa0401570:intron |
| CTCTAAAAGACTCAAATTTA+AGG | 0.168385 | 3_2:-27922204 | Msa0401570:CDS |
| TTGTTTATTCGGTTGATTTA+TGG | 0.180308 | 3_2:-27921740 | Msa0401570:CDS |
| TCATAATGAACATTCAATTT+AGG | 0.203184 | 3_2:+27922020 | None:intergenic |
| CTAACTCTCTTTCAATAGTT+TGG | 0.243271 | 3_2:+27919744 | None:intergenic |
| ATCAATAATCTTTACACAAT+TGG | 0.245251 | 3_2:-27922293 | Msa0401570:CDS |
| TATGGGGACTTCAGGTTAAA+AGG | 0.267598 | 3_2:-27920335 | Msa0401570:CDS |
| AATGTTTCGCCTTGGGGTTT+TGG | 0.273427 | 3_2:-27921792 | Msa0401570:CDS |
| AGAACATAGTTGCTGATAAA+TGG | 0.273562 | 3_2:-27922441 | Msa0401570:exon |
| GGCGACTGAGCTTGTTTATT+CGG | 0.274081 | 3_2:-27921751 | Msa0401570:CDS |
| ATCCTTGGGTGACACCTATA+TGG | 0.274359 | 3_2:-27920353 | Msa0401570:CDS |
| GAGAAGCAGTTGATGGATTT+AGG | 0.290761 | 3_2:-27921921 | Msa0401570:CDS |
| TGCCTCTAGTGTCTCACTTT+GGG | 0.296121 | 3_2:-27919675 | Msa0401570:CDS |
| TATTGCTGATGTACTTAATC+AGG | 0.309203 | 3_2:-27920646 | Msa0401570:CDS |
| GCAGGGCTGATTTGATAATA+AGG | 0.317228 | 3_2:+27920297 | None:intergenic |
| AAGTGGAAATGTTTCGCCTT+GGG | 0.326657 | 3_2:-27921799 | Msa0401570:CDS |
| AAAAGTGGATTTATATTTGA+TGG | 0.327721 | 3_2:+27919570 | None:intergenic |
| GTCAGTTTCTTTATATTTGA+AGG | 0.331884 | 3_2:+27920972 | None:intergenic |
| ATTTGATAATAAGGAGCTTC+AGG | 0.341340 | 3_2:+27920306 | None:intergenic |
| CTCAAATTTAAGGTTAATAG+TGG | 0.351895 | 3_2:-27922194 | Msa0401570:CDS |
| ACTCCTTTGTCTAAGGTAGA+AGG | 0.359869 | 3_2:-27921831 | Msa0401570:CDS |
| ATGAAGGAAGAGATATTGTT+GGG | 0.362056 | 3_2:-27922142 | Msa0401570:CDS |
| GTAATCAACAAAGTGGGTTT+AGG | 0.363219 | 3_2:-27922247 | Msa0401570:CDS |
| AGATCCTACTCCTTTGTCTA+AGG | 0.367132 | 3_2:-27921838 | Msa0401570:CDS |
| TCATTATGAGAAGCAGTTGA+TGG | 0.388498 | 3_2:-27921928 | Msa0401570:CDS |
| GCTGAAGGATAATTCTCCTT+GGG | 0.395504 | 3_2:+27920518 | None:intergenic |
| TCAATAATCTTTACACAATT+GGG | 0.398675 | 3_2:-27922292 | Msa0401570:CDS |
| GTCATAAATTTCTTACTTCG+TGG | 0.404663 | 3_2:-27919836 | Msa0401570:CDS |
| TTGCCTCTAGTGTCTCACTT+TGG | 0.408372 | 3_2:-27919676 | Msa0401570:CDS |
| CGCTGAAGGATAATTCTCCT+TGG | 0.410914 | 3_2:+27920517 | None:intergenic |
| GACACCTATATGGGGACTTC+AGG | 0.417003 | 3_2:-27920343 | Msa0401570:CDS |
| TAAATGGAAACTCTTTCATA+TGG | 0.421548 | 3_2:-27922425 | Msa0401570:CDS |
| GATGAAGGAAGAGATATTGT+TGG | 0.424295 | 3_2:-27922143 | Msa0401570:CDS |
| GCAAATGAGGCTGCAGCAGC+AGG | 0.429355 | 3_2:+27920558 | None:intergenic |
| TTAACCTGAAGTCCCCATAT+AGG | 0.431257 | 3_2:+27920339 | None:intergenic |
| TCCTTGGGTGACACCTATAT+GGG | 0.437100 | 3_2:-27920352 | Msa0401570:CDS |
| GTTTGAATTCAACTCAATCA+AGG | 0.438343 | 3_2:-27922349 | Msa0401570:CDS |
| AACTACCACCTCCTTGGACT+TGG | 0.440929 | 3_2:+27919622 | None:intergenic |
| CAAGTGGAAATGTTTCGCCT+TGG | 0.442422 | 3_2:-27921800 | Msa0401570:CDS |
| TGTATGGAAAAGAAGATCCT+TGG | 0.446455 | 3_2:-27920368 | Msa0401570:CDS |
| AAGCTCAGTCGCCCATGGTT+CGG | 0.446989 | 3_2:+27921761 | None:intergenic |
| TCATGAGGGCAGTGACCAGC+AGG | 0.450163 | 3_2:+27920279 | None:intergenic |
| ATTTATGGCAAGATCAAGTT+CGG | 0.451015 | 3_2:-27921725 | Msa0401570:CDS |
| AAGGTTAATAGTGGAAGTTA+TGG | 0.452518 | 3_2:-27922185 | Msa0401570:CDS |
| TTCTTTATATTTGAAGGTAG+AGG | 0.455798 | 3_2:+27920978 | None:intergenic |
| GGTGAACCAGTCTATATTGT+AGG | 0.458199 | 3_2:-27921161 | Msa0401570:CDS |
| TTTCCATACATGAGGCAAAT+CGG | 0.458829 | 3_2:+27920381 | None:intergenic |
| GATGAATCTAACGGTGAATC+CGG | 0.460350 | 3_2:-27922077 | Msa0401570:CDS |
| GTGCCGATTTGCCTCATGTA+TGG | 0.462283 | 3_2:-27920384 | Msa0401570:CDS |
| TACAATAGTTTAGAGTTGCT+TGG | 0.463091 | 3_2:+27922818 | None:intergenic |
| CTCCTTTGTCTAAGGTAGAA+GGG | 0.464692 | 3_2:-27921830 | Msa0401570:CDS |
| GGTTGATGTACCTGCTTCAA+AGG | 0.465594 | 3_2:-27922120 | Msa0401570:CDS |
| TAAATTTCTTACTTCGTGGA+TGG | 0.469086 | 3_2:-27919832 | Msa0401570:CDS |
| TAAAGATCAAAAGTATGTAT+TGG | 0.469357 | 3_2:+27919455 | None:intergenic |
| GATTCACCGTTAGATTCATC+AGG | 0.473019 | 3_2:+27922080 | None:intergenic |
| AGATTCAACTACCACCTCCT+TGG | 0.474343 | 3_2:+27919616 | None:intergenic |
| GTTACACCTTTCACTAAATG+AGG | 0.478531 | 3_2:+27921092 | None:intergenic |
| GAAAAGACAATGTACAAAAG+TGG | 0.483170 | 3_2:+27919555 | None:intergenic |
| TCAAAGAATCTTGTATATGT+TGG | 0.484126 | 3_2:+27922759 | None:intergenic |
| GACTTGCCAAAGTATTTCCA+TGG | 0.484178 | 3_2:-27921013 | Msa0401570:CDS |
| TCCGGCCCATGGAAATACTT+TGG | 0.486998 | 3_2:+27921007 | None:intergenic |
| CCAAATCCAGTAAAATCTCC+TGG | 0.491222 | 3_2:-27921035 | Msa0401570:CDS |
| TATTATCAAATCAGCCCTGC+TGG | 0.491907 | 3_2:-27920294 | Msa0401570:CDS |
| TGAAGGTAGAGGGAATGTTC+CGG | 0.494970 | 3_2:+27920989 | None:intergenic |
| GAAAAGGGTAATCAACAAAG+TGG | 0.495970 | 3_2:-27922254 | Msa0401570:CDS |
| AACTATTGTATATCTCTCCT+TGG | 0.497467 | 3_2:-27922805 | Msa0401570:five_prime_UTR |
| ACAAATTTGTTACAGGTCAT+CGG | 0.503439 | 3_2:-27921182 | Msa0401570:intron |
| CGCAGATCATTCCATAAATG+TGG | 0.503615 | 3_2:-27920619 | Msa0401570:CDS |
| GCCAAAGTATTTCCATGGGC+CGG | 0.503917 | 3_2:-27921008 | Msa0401570:CDS |
| CCTTGATAATGTTTCGCTGA+AGG | 0.506677 | 3_2:+27920503 | None:intergenic |
| GTATGGAAAAGAAGATCCTT+GGG | 0.512378 | 3_2:-27920367 | Msa0401570:CDS |
| TCTTTATATTTGAAGGTAGA+GGG | 0.516316 | 3_2:+27920979 | None:intergenic |
| GGAAATACTTTGGCAAGTCC+AGG | 0.521700 | 3_2:+27921017 | None:intergenic |
| AGAGGGAATGTTCCGGCCCA+TGG | 0.525112 | 3_2:+27920996 | None:intergenic |
| TCAATTATGTTTGCTCCCCA+AGG | 0.529087 | 3_2:-27920534 | Msa0401570:CDS |
| TCCTTTGTCTAAGGTAGAAG+GGG | 0.529330 | 3_2:-27921829 | Msa0401570:CDS |
| AAACATAATTGAAGCAAATG+AGG | 0.531154 | 3_2:+27920545 | None:intergenic |
| CTAGTGTCTCACTTTGGGAC+AGG | 0.531866 | 3_2:-27919670 | Msa0401570:CDS |
| AGAGAGAGCCATCAGACTCT+AGG | 0.533108 | 3_2:+27919801 | None:intergenic |
| TTTGAATTCAACTCAATCAA+GGG | 0.535016 | 3_2:-27922348 | Msa0401570:CDS |
| CCTTCAGCGAAACATTATCA+AGG | 0.535892 | 3_2:-27920503 | Msa0401570:intron |
| AGTGGAAATGTTTCGCCTTG+GGG | 0.540109 | 3_2:-27921798 | Msa0401570:CDS |
| ACAACTACTTATTACCGCAC+CGG | 0.544466 | 3_2:+27922058 | None:intergenic |
| AATGTTCATTATGAGAAAGC+TGG | 0.544928 | 3_2:-27922011 | Msa0401570:CDS |
| TGCTATCCTCATTTAGTGAA+AGG | 0.545914 | 3_2:-27921098 | Msa0401570:CDS |
| GGGACTTCAGGTTAAAAGGA+AGG | 0.555835 | 3_2:-27920331 | Msa0401570:CDS |
| AAAGGAGTAGGATCTTCAAA+AGG | 0.561238 | 3_2:+27921846 | None:intergenic |
| TGCAGCAGCAGGATGTCTTG+TGG | 0.564810 | 3_2:+27920569 | None:intergenic |
| AAAATTCTATTCCAAGTCCA+AGG | 0.565946 | 3_2:-27919633 | Msa0401570:CDS |
| GAAAGCTGGTTGTGAAAATG+TGG | 0.570001 | 3_2:-27921997 | Msa0401570:CDS |
| TGGAGATGAAACCGAACCAT+GGG | 0.571069 | 3_2:-27921772 | Msa0401570:CDS |
| GTAGAAGGGGTTACTTCAAG+TGG | 0.573024 | 3_2:-27921816 | Msa0401570:CDS |
| GGAATCAAAACCTTTGAAGC+AGG | 0.573711 | 3_2:+27922110 | None:intergenic |
| AAAGAACCAACACCGAAACC+CGG | 0.578498 | 3_2:+27921951 | None:intergenic |
| AGTGGATTTATATTTGATGG+TGG | 0.578633 | 3_2:+27919573 | None:intergenic |
| TATAAAGAAACTGACAGAGT+TGG | 0.579225 | 3_2:-27920964 | Msa0401570:CDS |
| CTATTCCAAGTCCAAGGAGG+TGG | 0.580393 | 3_2:-27919627 | Msa0401570:CDS |
| TAAGATTAAGAGCAGATCCA+AGG | 0.584580 | 3_2:+27922788 | None:intergenic |
| TTAGATTCATCAGGCAAACC+AGG | 0.584589 | 3_2:+27922089 | None:intergenic |
| GAATTGCCTACAATATAGAC+TGG | 0.590145 | 3_2:+27921155 | None:intergenic |
| GTGTCTATTTCTTCAAGCAG+AGG | 0.590583 | 3_2:+27919773 | None:intergenic |
| AGTTCGGTACTTCATTGAAG+AGG | 0.593978 | 3_2:-27921709 | Msa0401570:intron |
| ACCCCTTCTACCTTAGACAA+AGG | 0.601918 | 3_2:+27921828 | None:intergenic |
| TTGGAGATGAAACCGAACCA+TGG | 0.602303 | 3_2:-27921773 | Msa0401570:CDS |
| ACCTCAGGGACTTCGTCATG+AGG | 0.613786 | 3_2:+27920264 | None:intergenic |
| CCTCAGGGACTTCGTCATGA+GGG | 0.615846 | 3_2:+27920265 | None:intergenic |
| AAAAGGGTAATCAACAAAGT+GGG | 0.617388 | 3_2:-27922253 | Msa0401570:CDS |
| ACTTGCCAAAGTATTTCCAT+GGG | 0.623837 | 3_2:-27921012 | Msa0401570:CDS |
| ATTAGAAACCTAGAGTCTGA+TGG | 0.625268 | 3_2:-27919809 | Msa0401570:CDS |
| ATTGTAGGCAATTCACTAGG+AGG | 0.628400 | 3_2:-27921146 | Msa0401570:CDS |
| GTGTTCATAACTTGAAAACA+TGG | 0.628452 | 3_2:+27922395 | None:intergenic |
| TCTACCTTAGACAAAGGAGT+AGG | 0.630571 | 3_2:+27921834 | None:intergenic |
| GTTTCATCTCCAAAACCCCA+AGG | 0.634038 | 3_2:+27921783 | None:intergenic |
| CCCCATATAGGTGTCACCCA+AGG | 0.637101 | 3_2:+27920351 | None:intergenic |
| TAAACAAGCTCAGTCGCCCA+TGG | 0.640772 | 3_2:+27921756 | None:intergenic |
| GTAGTTGAATCTCAATGAGA+TGG | 0.645518 | 3_2:-27919605 | Msa0401570:exon |
| TATGTGATTAATGAAGATGA+AGG | 0.646571 | 3_2:-27922158 | Msa0401570:CDS |
| TATATTGTAGGCAATTCACT+AGG | 0.646604 | 3_2:-27921149 | Msa0401570:CDS |
| TGAAGGAAGAGATATTGTTG+GGG | 0.648797 | 3_2:-27922141 | Msa0401570:CDS |
| CCCTCATGACGAAGTCCCTG+AGG | 0.650741 | 3_2:-27920265 | Msa0401570:intron |
| CTGAAGGATAATTCTCCTTG+GGG | 0.654826 | 3_2:+27920519 | None:intergenic |
| GTCCCAAAGTGAGACACTAG+AGG | 0.660707 | 3_2:+27919673 | None:intergenic |
| CATGAGGGCAGTGACCAGCA+GGG | 0.666303 | 3_2:+27920280 | None:intergenic |
| CACTAAATGAGGATAGCATG+CGG | 0.675326 | 3_2:+27921103 | None:intergenic |
| CCTTGGGTGACACCTATATG+GGG | 0.695951 | 3_2:-27920351 | Msa0401570:CDS |
| ATTCTATTCCAAGTCCAAGG+AGG | 0.718477 | 3_2:-27919630 | Msa0401570:CDS |
| ATCTAACGGTGAATCCGGTG+CGG | 0.719969 | 3_2:-27922072 | Msa0401570:CDS |
| GGTTTGCCTGATGAATCTAA+CGG | 0.722351 | 3_2:-27922086 | Msa0401570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTGTTTTTTTTTTTTTTGA+AGG | - | chr3_2:27919743-27919762 | Msa0401570:CDS | 15.0% |
| !! | GTTTCTTATATTAGAAAAAA+TGG | - | chr3_2:27919909-27919928 | Msa0401570:intron | 15.0% |
| !! | TCTAAAAAAGAAAATTCATT+TGG | - | chr3_2:27920698-27920717 | Msa0401570:intron | 15.0% |
| !!! | TTATTATACAAATTTGTTAC+AGG | - | chr3_2:27921046-27921065 | Msa0401570:CDS | 15.0% |
| !! | TTCTTCTTTCACTAAATTAA+AGG | - | chr3_2:27919519-27919538 | Msa0401570:three_prime_UTR | 20.0% |
| !! | ATAAAACATGAACATGTATA+TGG | + | chr3_2:27919553-27919572 | None:intergenic | 20.0% |
| !!! | TGAAAATCAAGTTGAATTTT+TGG | - | chr3_2:27919705-27919724 | Msa0401570:CDS | 20.0% |
| !! | TCTTATATTAGAAAAAATGG+AGG | - | chr3_2:27919912-27919931 | Msa0401570:intron | 20.0% |
| !! | ATCAATAATCTTTACACAAT+TGG | - | chr3_2:27919942-27919961 | Msa0401570:intron | 20.0% |
| !! | TCAATAATCTTTACACAATT+GGG | - | chr3_2:27919943-27919962 | Msa0401570:intron | 20.0% |
| !!! | TCATTGAGATTTTATGAAAA+GGG | - | chr3_2:27919966-27919985 | Msa0401570:intron | 20.0% |
| !!! | GTAATAAGTAGTTGTTTTAA+GGG | - | chr3_2:27920185-27920204 | Msa0401570:intron | 20.0% |
| !! | TCATAATGAACATTCAATTT+AGG | + | chr3_2:27920218-27920237 | None:intergenic | 20.0% |
| !!! | AAAAAAATCTAAAACCACAT+AGG | + | chr3_2:27920654-27920673 | None:intergenic | 20.0% |
| !! | CTAAAATACTAAATCATATC+AGG | + | chr3_2:27921345-27921364 | None:intergenic | 20.0% |
| !! | AAATTGAATAGATGTGATAA+GGG | + | chr3_2:27921511-27921530 | None:intergenic | 20.0% |
| !! | AAAATTGAATAGATGTGATA+AGG | + | chr3_2:27921512-27921531 | None:intergenic | 20.0% |
| !! | GAAACAAATTAATAAGAATC+AGG | + | chr3_2:27921536-27921555 | None:intergenic | 20.0% |
| !!! | CTTATTAATTTGTTTCCTAT+AGG | - | chr3_2:27921540-27921559 | Msa0401570:intron | 20.0% |
| !! | CTTATATGATCTTAGAATTT+CGG | + | chr3_2:27922167-27922186 | None:intergenic | 20.0% |
| !!! | ATCCAATTTTATTTATTTGC+AGG | - | chr3_2:27922377-27922396 | Msa0401570:CDS | 20.0% |
| !!! | GATTTTTTTGAACTTTTTCT+TGG | + | chr3_2:27922522-27922541 | None:intergenic | 20.0% |
| !!! | AAAAGTGGATTTATATTTGA+TGG | + | chr3_2:27922668-27922687 | None:intergenic | 20.0% |
| !!! | GATTCTAAAAAAATTGTGTA+TGG | + | chr3_2:27922723-27922742 | None:intergenic | 20.0% |
| !!! | TAAAGATCAAAAGTATGTAT+TGG | + | chr3_2:27922783-27922802 | None:intergenic | 20.0% |
| !!! | ATATATTAGTCGGTTTTTCT+TGG | - | chr3_2:27919372-27919391 | Msa0401570:three_prime_UTR | 25.0% |
| ! | TCAAAGAATCTTGTATATGT+TGG | + | chr3_2:27919479-27919498 | None:intergenic | 25.0% |
| ! | TAAATGGAAACTCTTTCATA+TGG | - | chr3_2:27919810-27919829 | Msa0401570:CDS | 25.0% |
| ! | TTTGAATTCAACTCAATCAA+GGG | - | chr3_2:27919887-27919906 | Msa0401570:intron | 25.0% |
| !! | GTCATTGAGATTTTATGAAA+AGG | - | chr3_2:27919965-27919984 | Msa0401570:intron | 25.0% |
| !! | CTCTAAAAGACTCAAATTTA+AGG | - | chr3_2:27920031-27920050 | Msa0401570:intron | 25.0% |
| !! | CTCAAATTTAAGGTTAATAG+TGG | - | chr3_2:27920041-27920060 | Msa0401570:intron | 25.0% |
| ! | TATGTGATTAATGAAGATGA+AGG | - | chr3_2:27920077-27920096 | Msa0401570:intron | 25.0% |
| !!! | GGTAATAAGTAGTTGTTTTA+AGG | - | chr3_2:27920184-27920203 | Msa0401570:intron | 25.0% |
| !!! | ACCAAATGTTTTATTTTTGC+CGG | - | chr3_2:27920265-27920284 | Msa0401570:intron | 25.0% |
| !! | TTGTTTATTCGGTTGATTTA+TGG | - | chr3_2:27920495-27920514 | Msa0401570:intron | 25.0% |
| ! | TATACTATTTGAGCAAACAA+TGG | + | chr3_2:27920600-27920619 | None:intergenic | 25.0% |
| !!! | TTTTTTCTAACAACTTATGC+TGG | - | chr3_2:27920668-27920687 | Msa0401570:CDS | 25.0% |
| ! | TCAAATAAGTCAATTCAAAC+AGG | + | chr3_2:27920724-27920743 | None:intergenic | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | - | chr3_2:27920916-27920935 | Msa0401570:intron | 25.0% |
| ! | TCTTTATATTTGAAGGTAGA+GGG | + | chr3_2:27921259-27921278 | None:intergenic | 25.0% |
| ! | TTCTTTATATTTGAAGGTAG+AGG | + | chr3_2:27921260-27921279 | None:intergenic | 25.0% |
| ! | GTCAGTTTCTTTATATTTGA+AGG | + | chr3_2:27921266-27921285 | None:intergenic | 25.0% |
| ! | TTTAGTTGCAAACTTCTAAT+TGG | - | chr3_2:27921360-27921379 | Msa0401570:intron | 25.0% |
| ! | TAATGGAATAGATGTGATAA+GGG | + | chr3_2:27921486-27921505 | None:intergenic | 25.0% |
| ! | TTAATGGAATAGATGTGATA+AGG | + | chr3_2:27921487-27921506 | None:intergenic | 25.0% |
| !!! | ATTAATTTGTTTCCTATAGG+TGG | - | chr3_2:27921543-27921562 | Msa0401570:intron | 25.0% |
| !!! | TTAATTTGTTTCCTATAGGT+GGG | - | chr3_2:27921544-27921563 | Msa0401570:intron | 25.0% |
| ! | AAAAACGTTATCCACATTTA+TGG | + | chr3_2:27921630-27921649 | None:intergenic | 25.0% |
| ! | AAACATAATTGAAGCAAATG+AGG | + | chr3_2:27921693-27921712 | None:intergenic | 25.0% |
| ! | CAATTGCTAACTAATTAACT+TGG | - | chr3_2:27921997-27922016 | Msa0401570:CDS | 25.0% |
| ! | TCATAAAGAACTAAACAATG+AGG | + | chr3_2:27922334-27922353 | None:intergenic | 25.0% |
| ! | GACCTGCAAATAAATAAAAT+TGG | + | chr3_2:27922382-27922401 | None:intergenic | 25.0% |
| ! | TACAATAGTTTAGAGTTGCT+TGG | + | chr3_2:27919420-27919439 | None:intergenic | 30.0% |
| AACTATTGTATATCTCTCCT+TGG | - | chr3_2:27919430-27919449 | Msa0401570:three_prime_UTR | 30.0% | |
| AGAACATAGTTGCTGATAAA+TGG | - | chr3_2:27919794-27919813 | Msa0401570:CDS | 30.0% | |
| GTGTTCATAACTTGAAAACA+TGG | + | chr3_2:27919843-27919862 | None:intergenic | 30.0% | |
| GTTTGAATTCAACTCAATCA+AGG | - | chr3_2:27919886-27919905 | Msa0401570:intron | 30.0% | |
| AAAAGGGTAATCAACAAAGT+GGG | - | chr3_2:27919982-27920001 | Msa0401570:intron | 30.0% | |
| ! | AAGGTTAATAGTGGAAGTTA+TGG | - | chr3_2:27920050-27920069 | Msa0401570:intron | 30.0% |
| ATGAAGGAAGAGATATTGTT+GGG | - | chr3_2:27920093-27920112 | Msa0401570:intron | 30.0% | |
| !!! | TAAGTAGTTGTTTTAAGGGA+TGG | - | chr3_2:27920189-27920208 | Msa0401570:intron | 30.0% |
| AATGTTCATTATGAGAAAGC+TGG | - | chr3_2:27920224-27920243 | Msa0401570:intron | 30.0% | |
| !!! | CCAAATGTTTTATTTTTGCC+GGG | - | chr3_2:27920266-27920285 | Msa0401570:CDS | 30.0% |
| ATTTATGGCAAGATCAAGTT+CGG | - | chr3_2:27920510-27920529 | Msa0401570:CDS | 30.0% | |
| ! | GGTAAATAACTTGCATTGTT+TGG | - | chr3_2:27920547-27920566 | Msa0401570:CDS | 30.0% |
| TGTTTGCTCAAATAGTATAC+TGG | - | chr3_2:27920601-27920620 | Msa0401570:CDS | 30.0% | |
| AGTATACTGGAAAATGTTCT+TGG | - | chr3_2:27920614-27920633 | Msa0401570:CDS | 30.0% | |
| TTGTTTATCCAAACAAGGTT+AGG | - | chr3_2:27920921-27920940 | Msa0401570:intron | 30.0% | |
| !! | ACAAATTTGTTACAGGTCAT+CGG | - | chr3_2:27921053-27921072 | Msa0401570:CDS | 30.0% |
| TATATTGTAGGCAATTCACT+AGG | - | chr3_2:27921086-27921105 | Msa0401570:CDS | 30.0% | |
| TATAAAGAAACTGACAGAGT+TGG | - | chr3_2:27921271-27921290 | Msa0401570:intron | 30.0% | |
| AATGGAATAGATGTGATAAG+GGG | + | chr3_2:27921485-27921504 | None:intergenic | 30.0% | |
| TAGATGTGATAAGGGTTTAA+TGG | + | chr3_2:27921503-27921522 | None:intergenic | 30.0% | |
| ! | AGTACATCAGCAATACTTTT+CGG | + | chr3_2:27921584-27921603 | None:intergenic | 30.0% |
| TATTGCTGATGTACTTAATC+AGG | - | chr3_2:27921589-27921608 | Msa0401570:intron | 30.0% | |
| TACGTGAATACACATGTTAA+TGG | - | chr3_2:27921789-27921808 | Msa0401570:CDS | 30.0% | |
| ! | ACACATGTTAATGGTTTTTG+CGG | - | chr3_2:27921798-27921817 | Msa0401570:CDS | 30.0% |
| ! | ATTTGATAATAAGGAGCTTC+AGG | + | chr3_2:27921932-27921951 | None:intergenic | 30.0% |
| ! | ACCTTACAAGCTAATTTTGT+AGG | - | chr3_2:27922117-27922136 | Msa0401570:CDS | 30.0% |
| ! | CCTTACAAGCTAATTTTGTA+GGG | - | chr3_2:27922118-27922137 | Msa0401570:CDS | 30.0% |
| ATGATCTTAGAATTTCGGTT+GGG | + | chr3_2:27922162-27922181 | None:intergenic | 30.0% | |
| TATGATCTTAGAATTTCGGT+TGG | + | chr3_2:27922163-27922182 | None:intergenic | 30.0% | |
| TAAATATTCAGTGCGCAAAA+AGG | + | chr3_2:27922247-27922266 | None:intergenic | 30.0% | |
| AAAGAACTAAACAATGAGGA+AGG | + | chr3_2:27922330-27922349 | None:intergenic | 30.0% | |
| GTCATAAATTTCTTACTTCG+TGG | - | chr3_2:27922399-27922418 | Msa0401570:CDS | 30.0% | |
| TAAATTTCTTACTTCGTGGA+TGG | - | chr3_2:27922403-27922422 | Msa0401570:CDS | 30.0% | |
| CTAACTCTCTTTCAATAGTT+TGG | + | chr3_2:27922494-27922513 | None:intergenic | 30.0% | |
| ! | TGGACTTGGAATAGAATTTT+AGG | + | chr3_2:27922602-27922621 | None:intergenic | 30.0% |
| AAAATTCTATTCCAAGTCCA+AGG | - | chr3_2:27922602-27922621 | Msa0401570:intron | 30.0% | |
| ! | AGTGGATTTATATTTGATGG+TGG | + | chr3_2:27922665-27922684 | None:intergenic | 30.0% |
| GAAAAGACAATGTACAAAAG+TGG | + | chr3_2:27922683-27922702 | None:intergenic | 30.0% | |
| TAAGATTAAGAGCAGATCCA+AGG | + | chr3_2:27919450-27919469 | None:intergenic | 35.0% | |
| ! | GGAGAATCATTTTCTGTTGT+TGG | - | chr3_2:27919764-27919783 | Msa0401570:CDS | 35.0% |
| GAAAAGGGTAATCAACAAAG+TGG | - | chr3_2:27919981-27920000 | Msa0401570:intron | 35.0% | |
| ! | GTAATCAACAAAGTGGGTTT+AGG | - | chr3_2:27919988-27920007 | Msa0401570:intron | 35.0% |
| !! | AGGTCAAAACGTGTTTTTGA+AGG | - | chr3_2:27920008-27920027 | Msa0401570:intron | 35.0% |
| GATGAAGGAAGAGATATTGT+TGG | - | chr3_2:27920092-27920111 | Msa0401570:intron | 35.0% | |
| TGAAGGAAGAGATATTGTTG+GGG | - | chr3_2:27920094-27920113 | Msa0401570:intron | 35.0% | |
| CCCGGCAAAAATAAAACATT+TGG | + | chr3_2:27920269-27920288 | None:intergenic | 35.0% | |
| !!! | GTTTTATTTTTGCCGGGTTT+CGG | - | chr3_2:27920272-27920291 | Msa0401570:CDS | 35.0% |
| TCATTATGAGAAGCAGTTGA+TGG | - | chr3_2:27920307-27920326 | Msa0401570:CDS | 35.0% | |
| AAAGGAGTAGGATCTTCAAA+AGG | + | chr3_2:27920392-27920411 | None:intergenic | 35.0% | |
| ! | CAAATTTGCTTGTTCCTATG+TGG | - | chr3_2:27920637-27920656 | Msa0401570:CDS | 35.0% |
| ! | AATCATCAGCACTCTTTTGA+AGG | - | chr3_2:27920995-27921014 | Msa0401570:CDS | 35.0% |
| GAATTGCCTACAATATAGAC+TGG | + | chr3_2:27921083-27921102 | None:intergenic | 35.0% | |
| TGCTATCCTCATTTAGTGAA+AGG | - | chr3_2:27921137-27921156 | Msa0401570:CDS | 35.0% | |
| GTTACACCTTTCACTAAATG+AGG | + | chr3_2:27921146-27921165 | None:intergenic | 35.0% | |
| ! | TGCTTAATGCAACACCTTTT+TGG | - | chr3_2:27921168-27921187 | Msa0401570:CDS | 35.0% |
| ! | GCTTAATGCAACACCTTTTT+GGG | - | chr3_2:27921169-27921188 | Msa0401570:CDS | 35.0% |
| ! | CTTAATGCAACACCTTTTTG+GGG | - | chr3_2:27921170-27921189 | Msa0401570:CDS | 35.0% |
| ! | TTAATGCAACACCTTTTTGG+GGG | - | chr3_2:27921171-27921190 | Msa0401570:intron | 35.0% |
| ! | ACTTGCCAAAGTATTTCCAT+GGG | - | chr3_2:27921223-27921242 | Msa0401570:intron | 35.0% |
| TCGCAAATGAATGACTACAT+CGG | + | chr3_2:27921404-27921423 | None:intergenic | 35.0% | |
| ! | ACTAATTTTCTCCCACCTAT+AGG | + | chr3_2:27921558-27921577 | None:intergenic | 35.0% |
| TTTCCATACATGAGGCAAAT+CGG | + | chr3_2:27921857-27921876 | None:intergenic | 35.0% | |
| ! | GATCTTCTTTTCCATACATG+AGG | + | chr3_2:27921865-27921884 | None:intergenic | 35.0% |
| TGTATGGAAAAGAAGATCCT+TGG | - | chr3_2:27921867-27921886 | Msa0401570:CDS | 35.0% | |
| GTATGGAAAAGAAGATCCTT+GGG | - | chr3_2:27921868-27921887 | Msa0401570:CDS | 35.0% | |
| ATATGTTAAGAGCTGCACAT+TGG | - | chr3_2:27922046-27922065 | Msa0401570:CDS | 35.0% | |
| ! | TGCACATTGGATTTGAGATA+GGG | - | chr3_2:27922059-27922078 | Msa0401570:CDS | 35.0% |
| CAACTTATAAACTCACATCC+AGG | + | chr3_2:27922085-27922104 | None:intergenic | 35.0% | |
| CTGGATGTGAGTTTATAAGT+TGG | - | chr3_2:27922083-27922102 | Msa0401570:CDS | 35.0% | |
| !! | CCCTACAAAATTAGCTTGTA+AGG | + | chr3_2:27922121-27922140 | None:intergenic | 35.0% |
| ! | TTTTGTAGGGTTGAGTTAAG+CGG | - | chr3_2:27922131-27922150 | Msa0401570:CDS | 35.0% |
| AATGAGGAAGGAATAACATG+AGG | + | chr3_2:27922318-27922337 | None:intergenic | 35.0% | |
| ATTAGAAACCTAGAGTCTGA+TGG | - | chr3_2:27922426-27922445 | Msa0401570:exon | 35.0% | |
| GTAGTTGAATCTCAATGAGA+TGG | - | chr3_2:27922630-27922649 | Msa0401570:intron | 35.0% | |
| !! | GGAATCAAAACCTTTGAAGC+AGG | + | chr3_2:27920128-27920147 | None:intergenic | 40.0% |
| !!! | GCTTCAAAGGTTTTGATTCC+TGG | - | chr3_2:27920128-27920147 | Msa0401570:intron | 40.0% |
| TTAGATTCATCAGGCAAACC+AGG | + | chr3_2:27920149-27920168 | None:intergenic | 40.0% | |
| GGTTTGCCTGATGAATCTAA+CGG | - | chr3_2:27920149-27920168 | Msa0401570:intron | 40.0% | |
| GATTCACCGTTAGATTCATC+AGG | + | chr3_2:27920158-27920177 | None:intergenic | 40.0% | |
| GATGAATCTAACGGTGAATC+CGG | - | chr3_2:27920158-27920177 | Msa0401570:intron | 40.0% | |
| ACAACTACTTATTACCGCAC+CGG | + | chr3_2:27920180-27920199 | None:intergenic | 40.0% | |
| GAAAGCTGGTTGTGAAAATG+TGG | - | chr3_2:27920238-27920257 | Msa0401570:intron | 40.0% | |
| !! | GAGAAGCAGTTGATGGATTT+AGG | - | chr3_2:27920314-27920333 | Msa0401570:CDS | 40.0% |
| AGATCCTACTCCTTTGTCTA+AGG | - | chr3_2:27920397-27920416 | Msa0401570:CDS | 40.0% | |
| TCTACCTTAGACAAAGGAGT+AGG | + | chr3_2:27920404-27920423 | None:intergenic | 40.0% | |
| ! | ACTCCTTTGTCTAAGGTAGA+AGG | - | chr3_2:27920404-27920423 | Msa0401570:intron | 40.0% |
| ! | CTCCTTTGTCTAAGGTAGAA+GGG | - | chr3_2:27920405-27920424 | Msa0401570:intron | 40.0% |
| ! | TCCTTTGTCTAAGGTAGAAG+GGG | - | chr3_2:27920406-27920425 | Msa0401570:intron | 40.0% |
| AAGTGGAAATGTTTCGCCTT+GGG | - | chr3_2:27920436-27920455 | Msa0401570:intron | 40.0% | |
| AGTTCGGTACTTCATTGAAG+AGG | - | chr3_2:27920526-27920545 | Msa0401570:CDS | 40.0% | |
| CCTAGAGAGCTTATCGAAAT+AGG | + | chr3_2:27920832-27920851 | None:intergenic | 40.0% | |
| CCTATTTCGATAAGCTCTCT+AGG | - | chr3_2:27920829-27920848 | Msa0401570:intron | 40.0% | |
| GGTGAACCAGTCTATATTGT+AGG | - | chr3_2:27921074-27921093 | Msa0401570:CDS | 40.0% | |
| ATTGTAGGCAATTCACTAGG+AGG | - | chr3_2:27921089-27921108 | Msa0401570:CDS | 40.0% | |
| CACTAAATGAGGATAGCATG+CGG | + | chr3_2:27921135-27921154 | None:intergenic | 40.0% | |
| ! | CCAGGAGATTTTACTGGATT+TGG | + | chr3_2:27921203-27921222 | None:intergenic | 40.0% |
| CCAAATCCAGTAAAATCTCC+TGG | - | chr3_2:27921200-27921219 | Msa0401570:intron | 40.0% | |
| ! | GACTTGCCAAAGTATTTCCA+TGG | - | chr3_2:27921222-27921241 | Msa0401570:intron | 40.0% |
| !! | TGACAGAGTTGGTGTAAGTA+TGG | - | chr3_2:27921282-27921301 | Msa0401570:intron | 40.0% |
| CGCAGATCATTCCATAAATG+TGG | - | chr3_2:27921616-27921635 | Msa0401570:intron | 40.0% | |
| TCAATTATGTTTGCTCCCCA+AGG | - | chr3_2:27921701-27921720 | Msa0401570:intron | 40.0% | |
| CTGAAGGATAATTCTCCTTG+GGG | + | chr3_2:27921719-27921738 | None:intergenic | 40.0% | |
| GCTGAAGGATAATTCTCCTT+GGG | + | chr3_2:27921720-27921739 | None:intergenic | 40.0% | |
| !! | CCTTGATAATGTTTCGCTGA+AGG | + | chr3_2:27921735-27921754 | None:intergenic | 40.0% |
| CCTTCAGCGAAACATTATCA+AGG | - | chr3_2:27921732-27921751 | Msa0401570:CDS | 40.0% | |
| ! | TTTTAGATGTCGAGCGAACA+AGG | - | chr3_2:27921829-27921848 | Msa0401570:CDS | 40.0% |
| TTAACCTGAAGTCCCCATAT+AGG | + | chr3_2:27921899-27921918 | None:intergenic | 40.0% | |
| ! | TATGGGGACTTCAGGTTAAA+AGG | - | chr3_2:27921900-27921919 | Msa0401570:CDS | 40.0% |
| !! | GCAGGGCTGATTTGATAATA+AGG | + | chr3_2:27921941-27921960 | None:intergenic | 40.0% |
| TATTATCAAATCAGCCCTGC+TGG | - | chr3_2:27921941-27921960 | Msa0401570:CDS | 40.0% | |
| GTTAGCAATTGCATACCTCA+GGG | + | chr3_2:27921988-27922007 | None:intergenic | 40.0% | |
| AGTTAGCAATTGCATACCTC+AGG | + | chr3_2:27921989-27922008 | None:intergenic | 40.0% | |
| ! | CTGCACATTGGATTTGAGAT+AGG | - | chr3_2:27922058-27922077 | Msa0401570:CDS | 40.0% |
| AAAAGGAAATGCCGGATAGT+TGG | + | chr3_2:27922230-27922249 | None:intergenic | 40.0% | |
| ! | GTGTCTATTTCTTCAAGCAG+AGG | + | chr3_2:27922465-27922484 | None:intergenic | 40.0% |
| ATTCTATTCCAAGTCCAAGG+AGG | - | chr3_2:27922605-27922624 | Msa0401570:intron | 40.0% | |
| ! | CGGTTTTTCTTGGCTCATAG+AGG | - | chr3_2:27919382-27919401 | Msa0401570:three_prime_UTR | 45.0% |
| ! | GGTTGATGTACCTGCTTCAA+AGG | - | chr3_2:27920115-27920134 | Msa0401570:intron | 45.0% |
| AAAGAACCAACACCGAAACC+CGG | + | chr3_2:27920287-27920306 | None:intergenic | 45.0% | |
| ! | TAGGTCGTGATTTTCGCGTT+TGG | - | chr3_2:27920333-27920352 | Msa0401570:CDS | 45.0% |
| ! | AGGTCGTGATTTTCGCGTTT+GGG | - | chr3_2:27920334-27920353 | Msa0401570:CDS | 45.0% |
| ACCCCTTCTACCTTAGACAA+AGG | + | chr3_2:27920410-27920429 | None:intergenic | 45.0% | |
| GTAGAAGGGGTTACTTCAAG+TGG | - | chr3_2:27920419-27920438 | Msa0401570:intron | 45.0% | |
| CAAGTGGAAATGTTTCGCCT+TGG | - | chr3_2:27920435-27920454 | Msa0401570:intron | 45.0% | |
| AGTGGAAATGTTTCGCCTTG+GGG | - | chr3_2:27920437-27920456 | Msa0401570:intron | 45.0% | |
| ! | AATGTTTCGCCTTGGGGTTT+TGG | - | chr3_2:27920443-27920462 | Msa0401570:intron | 45.0% |
| GTTTCATCTCCAAAACCCCA+AGG | + | chr3_2:27920455-27920474 | None:intergenic | 45.0% | |
| TTGGAGATGAAACCGAACCA+TGG | - | chr3_2:27920462-27920481 | Msa0401570:intron | 45.0% | |
| TGGAGATGAAACCGAACCAT+GGG | - | chr3_2:27920463-27920482 | Msa0401570:intron | 45.0% | |
| ! | GGCGACTGAGCTTGTTTATT+CGG | - | chr3_2:27920484-27920503 | Msa0401570:intron | 45.0% |
| TGTCCACTAGCATAAGCACT+TGG | - | chr3_2:27920747-27920766 | Msa0401570:intron | 45.0% | |
| GTCCACTAGCATAAGCACTT+GGG | - | chr3_2:27920748-27920767 | Msa0401570:intron | 45.0% | |
| TAAGCACTTGGGAGACTGTT+TGG | - | chr3_2:27920759-27920778 | Msa0401570:intron | 45.0% | |
| AAGCACTTGGGAGACTGTTT+GGG | - | chr3_2:27920760-27920779 | Msa0401570:intron | 45.0% | |
| TCCAAACAAGGTTAGGTCAG+TGG | - | chr3_2:27920928-27920947 | Msa0401570:intron | 45.0% | |
| TCCACTGACCTAACCTTGTT+TGG | + | chr3_2:27920932-27920951 | None:intergenic | 45.0% | |
| TTTGGCAGAAACCCCCAAAA+AGG | + | chr3_2:27921185-27921204 | None:intergenic | 45.0% | |
| ! | GCAAGTCCAGGAGATTTTAC+TGG | + | chr3_2:27921209-27921228 | None:intergenic | 45.0% |
| GGAAATACTTTGGCAAGTCC+AGG | + | chr3_2:27921221-27921240 | None:intergenic | 45.0% | |
| TGAAGGTAGAGGGAATGTTC+CGG | + | chr3_2:27921249-27921268 | None:intergenic | 45.0% | |
| TAGATGTGATAAGGGGATCC+TGG | + | chr3_2:27921478-27921497 | None:intergenic | 45.0% | |
| CGCTGAAGGATAATTCTCCT+TGG | + | chr3_2:27921721-27921740 | None:intergenic | 45.0% | |
| ATCCTTGGGTGACACCTATA+TGG | - | chr3_2:27921882-27921901 | Msa0401570:CDS | 45.0% | |
| TCCTTGGGTGACACCTATAT+GGG | - | chr3_2:27921883-27921902 | Msa0401570:CDS | 45.0% | |
| ! | GGGACTTCAGGTTAAAAGGA+AGG | - | chr3_2:27921904-27921923 | Msa0401570:CDS | 45.0% |
| ! | ATTGGATTTGAGATAGGGCC+TGG | - | chr3_2:27922064-27922083 | Msa0401570:CDS | 45.0% |
| AGAGTGTATCCAAGATCCGT+TGG | - | chr3_2:27922185-27922204 | Msa0401570:CDS | 45.0% | |
| GAGTGTATCCAAGATCCGTT+GGG | - | chr3_2:27922186-27922205 | Msa0401570:CDS | 45.0% | |
| !! | ATAGTTGGTGACCCAATAGC+AGG | + | chr3_2:27922215-27922234 | None:intergenic | 45.0% |
| CTATTGGGTCACCAACTATC+CGG | - | chr3_2:27922216-27922235 | Msa0401570:CDS | 45.0% | |
| AGTGCGCAAAAAGGAAATGC+CGG | + | chr3_2:27922238-27922257 | None:intergenic | 45.0% | |
| TTGCCTCTAGTGTCTCACTT+TGG | - | chr3_2:27922559-27922578 | Msa0401570:intron | 45.0% | |
| TGCCTCTAGTGTCTCACTTT+GGG | - | chr3_2:27922560-27922579 | Msa0401570:intron | 45.0% | |
| AGATTCAACTACCACCTCCT+TGG | + | chr3_2:27922622-27922641 | None:intergenic | 45.0% | |
| ATCTAACGGTGAATCCGGTG+CGG | - | chr3_2:27920163-27920182 | Msa0401570:intron | 50.0% | |
| !! | TTTTTGCCGGGTTTCGGTGT+TGG | - | chr3_2:27920278-27920297 | Msa0401570:CDS | 50.0% |
| !!! | GTTTGGGCGCTGGATTTTCT+AGG | - | chr3_2:27920350-27920369 | Msa0401570:CDS | 50.0% |
| !!! | GCGCTGGATTTTCTAGGACA+AGG | - | chr3_2:27920356-27920375 | Msa0401570:CDS | 50.0% |
| TAAACAAGCTCAGTCGCCCA+TGG | + | chr3_2:27920482-27920501 | None:intergenic | 50.0% | |
| CTCCCAAGTGCTTATGCTAG+TGG | + | chr3_2:27920753-27920772 | None:intergenic | 50.0% | |
| ! | GCCAAAGTATTTCCATGGGC+CGG | - | chr3_2:27921227-27921246 | Msa0401570:intron | 50.0% |
| TCCGGCCCATGGAAATACTT+TGG | + | chr3_2:27921231-27921250 | None:intergenic | 50.0% | |
| ACTGCTGATAGTACACCTCC+AGG | - | chr3_2:27921457-27921476 | Msa0401570:intron | 50.0% | |
| ATGTGATAAGGGGATCCTGG+AGG | + | chr3_2:27921475-27921494 | None:intergenic | 50.0% | |
| !! | GTGCCGATTTGCCTCATGTA+TGG | - | chr3_2:27921851-27921870 | Msa0401570:CDS | 50.0% |
| CCTTGGGTGACACCTATATG+GGG | - | chr3_2:27921884-27921903 | Msa0401570:CDS | 50.0% | |
| GACACCTATATGGGGACTTC+AGG | - | chr3_2:27921892-27921911 | Msa0401570:CDS | 50.0% | |
| AGAGAGAGCCATCAGACTCT+AGG | + | chr3_2:27922437-27922456 | None:intergenic | 50.0% | |
| GTCCCAAAGTGAGACACTAG+AGG | + | chr3_2:27922565-27922584 | None:intergenic | 50.0% | |
| !! | CTAGTGTCTCACTTTGGGAC+AGG | - | chr3_2:27922565-27922584 | Msa0401570:intron | 50.0% |
| CTATTCCAAGTCCAAGGAGG+TGG | - | chr3_2:27922608-27922627 | Msa0401570:intron | 50.0% | |
| AACTACCACCTCCTTGGACT+TGG | + | chr3_2:27922616-27922635 | None:intergenic | 50.0% | |
| ! | TGATTTTCGCGTTTGGGCGC+TGG | - | chr3_2:27920340-27920359 | Msa0401570:CDS | 55.0% |
| AAGCTCAGTCGCCCATGGTT+CGG | + | chr3_2:27920477-27920496 | None:intergenic | 55.0% | |
| TGCAGCAGCAGGATGTCTTG+TGG | + | chr3_2:27921669-27921688 | None:intergenic | 55.0% | |
| ! | CCCCATATAGGTGTCACCCA+AGG | + | chr3_2:27921887-27921906 | None:intergenic | 55.0% |
| CCTCAGGGACTTCGTCATGA+GGG | + | chr3_2:27921973-27921992 | None:intergenic | 55.0% | |
| ACCTCAGGGACTTCGTCATG+AGG | + | chr3_2:27921974-27921993 | None:intergenic | 55.0% | |
| !! | GTTGGTGACCCAATAGCAGG+TGG | + | chr3_2:27922212-27922231 | None:intergenic | 55.0% |
| AGAGGGAATGTTCCGGCCCA+TGG | + | chr3_2:27921242-27921261 | None:intergenic | 60.0% | |
| GCAAATGAGGCTGCAGCAGC+AGG | + | chr3_2:27921680-27921699 | None:intergenic | 60.0% | |
| CATGAGGGCAGTGACCAGCA+GGG | + | chr3_2:27921958-27921977 | None:intergenic | 60.0% | |
| TCATGAGGGCAGTGACCAGC+AGG | + | chr3_2:27921959-27921978 | None:intergenic | 60.0% | |
| CCCTCATGACGAAGTCCCTG+AGG | - | chr3_2:27921970-27921989 | Msa0401570:CDS | 60.0% | |
| TCCGTTGGGCCACCTGCTAT+TGG | - | chr3_2:27922200-27922219 | Msa0401570:CDS | 60.0% | |
| CCCAATAGCAGGTGGCCCAA+CGG | + | chr3_2:27922204-27922223 | None:intergenic | 60.0% | |
| CCGTTGGGCCACCTGCTATT+GGG | - | chr3_2:27922201-27922220 | Msa0401570:CDS | 60.0% | |
| GCAGGTGGCCCAACGGATCT+TGG | + | chr3_2:27922197-27922216 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 27919369 | 27922888 | 27919369 | ID=Msa0401570;Name=Msa0401570 |
| chr3_2 | mRNA | 27919369 | 27922888 | 27919369 | ID=Msa0401570-mRNA-1;Parent=Msa0401570;Name=Msa0401570-mRNA-1;_AED=0.11;_eAED=0.11;_QI=200|1|1|1|0.66|0.57|7|241|519 |
| chr3_2 | exon | 27919369 | 27919858 | 27919369 | ID=Msa0401570-mRNA-1:exon:5721;Parent=Msa0401570-mRNA-1 |
| chr3_2 | exon | 27920266 | 27920422 | 27920266 | ID=Msa0401570-mRNA-1:exon:5720;Parent=Msa0401570-mRNA-1 |
| chr3_2 | exon | 27920504 | 27920695 | 27920504 | ID=Msa0401570-mRNA-1:exon:5719;Parent=Msa0401570-mRNA-1 |
| chr3_2 | exon | 27920963 | 27921189 | 27920963 | ID=Msa0401570-mRNA-1:exon:5718;Parent=Msa0401570-mRNA-1 |
| chr3_2 | exon | 27921710 | 27922492 | 27921710 | ID=Msa0401570-mRNA-1:exon:5717;Parent=Msa0401570-mRNA-1 |
| chr3_2 | exon | 27922717 | 27922748 | 27922717 | ID=Msa0401570-mRNA-1:exon:5716;Parent=Msa0401570-mRNA-1 |
| chr3_2 | exon | 27922769 | 27922888 | 27922769 | ID=Msa0401570-mRNA-1:exon:5715;Parent=Msa0401570-mRNA-1 |
| chr3_2 | five_prime_UTR | 27922769 | 27922888 | 27922769 | ID=Msa0401570-mRNA-1:five_prime_utr;Parent=Msa0401570-mRNA-1 |
| chr3_2 | five_prime_UTR | 27922717 | 27922748 | 27922717 | ID=Msa0401570-mRNA-1:five_prime_utr;Parent=Msa0401570-mRNA-1 |
| chr3_2 | five_prime_UTR | 27922445 | 27922492 | 27922445 | ID=Msa0401570-mRNA-1:five_prime_utr;Parent=Msa0401570-mRNA-1 |
| chr3_2 | CDS | 27921710 | 27922444 | 27921710 | ID=Msa0401570-mRNA-1:cds;Parent=Msa0401570-mRNA-1 |
| chr3_2 | CDS | 27920963 | 27921189 | 27920963 | ID=Msa0401570-mRNA-1:cds;Parent=Msa0401570-mRNA-1 |
| chr3_2 | CDS | 27920504 | 27920695 | 27920504 | ID=Msa0401570-mRNA-1:cds;Parent=Msa0401570-mRNA-1 |
| chr3_2 | CDS | 27920266 | 27920422 | 27920266 | ID=Msa0401570-mRNA-1:cds;Parent=Msa0401570-mRNA-1 |
| chr3_2 | CDS | 27919610 | 27919858 | 27919610 | ID=Msa0401570-mRNA-1:cds;Parent=Msa0401570-mRNA-1 |
| chr3_2 | three_prime_UTR | 27919369 | 27919609 | 27919369 | ID=Msa0401570-mRNA-1:three_prime_utr;Parent=Msa0401570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
