Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029010 | AES60912.2 | 67.130 | 216 | 36 | 4 | 1 | 182 | 188 | 402 | 3.66e-76 | 260 |
| Msa0029010 | AES60912.2 | 94.417 | 412 | 23 | 0 | 210 | 621 | 40 | 451 | 0.0 | 791 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029010 | sp|P0DO21|GIP2_NICBE | 62.500 | 448 | 151 | 8 | 182 | 621 | 1 | 439 | 0.0 | 534 |
| Msa0029010 | sp|P0DO21|GIP2_NICBE | 58.879 | 214 | 55 | 5 | 1 | 183 | 180 | 391 | 8.13e-69 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029010 | G7IEE3 | 67.130 | 216 | 36 | 4 | 1 | 182 | 188 | 402 | 1.75e-76 | 260 |
| Msa0029010 | G7IEE3 | 94.417 | 412 | 23 | 0 | 210 | 621 | 40 | 451 | 0.0 | 791 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029010 | Msa0029020 | 0.907076 | 7.485015e-81 | -8.615850e-47 |
| Msa0029010 | Msa0046680 | 0.809713 | 1.651469e-50 | -8.615850e-47 |
| Msa0029010 | Msa0064990 | 0.804996 | 1.652199e-49 | -8.615850e-47 |
| Msa0029010 | Msa0076640 | 0.874466 | 6.607935e-68 | -8.615850e-47 |
| Msa0029010 | Msa0076650 | 0.909764 | 3.969122e-82 | -8.615850e-47 |
| Msa0029010 | Msa0146210 | 0.822705 | 2.053021e-53 | -8.615850e-47 |
| Msa0029010 | Msa0169050 | 0.918351 | 1.733616e-86 | -8.615850e-47 |
| Msa0029010 | Msa0198140 | -0.801621 | 8.260800e-49 | -8.615850e-47 |
| Msa0029010 | Msa0224210 | 0.816855 | 4.459699e-52 | -8.615850e-47 |
| Msa0029010 | Msa0271300 | 0.818056 | 2.392203e-52 | -8.615850e-47 |
| Msa0029010 | Msa0291900 | 0.803279 | 3.760359e-49 | -8.615850e-47 |
| Msa0029010 | Msa0291920 | 0.819086 | 1.397133e-52 | -8.615850e-47 |
| Msa0029010 | Msa0368620 | 0.809874 | 1.525176e-50 | -8.615850e-47 |
| Msa0029010 | Msa0387180 | 0.805256 | 1.457057e-49 | -8.615850e-47 |
| Msa0029010 | Msa0389710 | 0.814651 | 1.382508e-51 | -8.615850e-47 |
| Msa0029010 | Msa0390790 | 0.817244 | 3.647134e-52 | -8.615850e-47 |
| Msa0029010 | Msa0416040 | 0.816051 | 6.748018e-52 | -8.615850e-47 |
| Msa0029010 | Msa0421080 | 0.810726 | 9.986092e-51 | -8.615850e-47 |
| Msa0029010 | Msa0466850 | 0.809270 | 2.056127e-50 | -8.615850e-47 |
| Msa0029010 | Msa0468050 | 0.823523 | 1.323078e-53 | -8.615850e-47 |
| Msa0029010 | Msa0480260 | 0.810565 | 1.082363e-50 | -8.615850e-47 |
| Msa0029010 | Msa0513670 | 0.816796 | 4.598070e-52 | -8.615850e-47 |
| Msa0029010 | Msa0525940 | -0.809304 | 2.021264e-50 | -8.615850e-47 |
| Msa0029010 | Msa0595240 | -0.802151 | 6.427649e-49 | -8.615850e-47 |
| Msa0029010 | Msa0612580 | 0.814734 | 1.324915e-51 | -8.615850e-47 |
| Msa0029010 | Msa0633630 | 0.806919 | 6.511503e-50 | -8.615850e-47 |
| Msa0029010 | Msa0741170 | 0.822678 | 2.083080e-53 | -8.615850e-47 |
| Msa0029010 | Msa0826370 | 0.809059 | 2.281534e-50 | -8.615850e-47 |
| Msa0029010 | Msa0831430 | 0.804208 | 2.412404e-49 | -8.615850e-47 |
| Msa0029010 | Msa0861820 | 0.810924 | 9.050379e-51 | -8.615850e-47 |
| Msa0029010 | Msa0876600 | 0.804746 | 1.862673e-49 | -8.615850e-47 |
| Msa0029010 | Msa0882880 | 0.812132 | 4.944684e-51 | -8.615850e-47 |
| Msa0029010 | Msa0914710 | 0.817918 | 2.570517e-52 | -8.615850e-47 |
| Msa0029010 | Msa0984460 | 0.807954 | 3.927822e-50 | -8.615850e-47 |
| Msa0029010 | Msa0986160 | 0.822413 | 2.400426e-53 | -8.615850e-47 |
| Msa0029010 | Msa1039650 | 0.831325 | 1.779864e-55 | -8.615850e-47 |
| Msa0029010 | Msa1120560 | 0.800218 | 1.597961e-48 | -8.615850e-47 |
| Msa0029010 | Msa1183750 | 0.824220 | 9.081651e-54 | -8.615850e-47 |
| Msa0029010 | Msa1309050 | 0.821255 | 4.448821e-53 | -8.615850e-47 |
| Msa0029010 | Msa1344930 | 0.802849 | 4.615710e-49 | -8.615850e-47 |
| Msa0029010 | Msa1373990 | 0.823582 | 1.281675e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029010 | MtrunA17_Chr1g0185651 | 94.417 | 412 | 23 | 0 | 210 | 621 | 40 | 451 | 0.0 | 791 |
| Msa0029010 | MtrunA17_Chr1g0185651 | 67.130 | 216 | 36 | 4 | 1 | 182 | 188 | 402 | 3.36e-80 | 260 |
| Msa0029010 | MtrunA17_Chr1g0185661 | 81.757 | 444 | 70 | 5 | 181 | 621 | 651 | 1086 | 0.0 | 721 |
| Msa0029010 | MtrunA17_Chr1g0185661 | 78.341 | 434 | 82 | 6 | 182 | 612 | 1 | 425 | 0.0 | 666 |
| Msa0029010 | MtrunA17_Chr1g0185661 | 83.981 | 206 | 7 | 2 | 1 | 180 | 830 | 1035 | 2.95e-101 | 332 |
| Msa0029010 | MtrunA17_Chr1g0185661 | 74.879 | 207 | 23 | 5 | 1 | 180 | 179 | 383 | 1.30e-83 | 283 |
| Msa0029010 | MtrunA17_Chr2g0287821 | 52.304 | 434 | 191 | 8 | 192 | 620 | 35 | 457 | 6.97e-149 | 438 |
| Msa0029010 | MtrunA17_Chr2g0287821 | 48.826 | 213 | 81 | 5 | 1 | 185 | 200 | 412 | 1.74e-51 | 184 |
| Msa0029010 | MtrunA17_Chr1g0187841 | 51.685 | 445 | 175 | 8 | 194 | 620 | 13 | 435 | 1.82e-145 | 428 |
| Msa0029010 | MtrunA17_Chr1g0187841 | 52.174 | 207 | 70 | 5 | 1 | 181 | 169 | 372 | 1.16e-56 | 197 |
| Msa0029010 | MtrunA17_Chr2g0287781 | 35.811 | 740 | 323 | 16 | 1 | 612 | 165 | 880 | 5.32e-106 | 348 |
| Msa0029010 | MtrunA17_Chr2g0287781 | 39.318 | 440 | 231 | 8 | 186 | 612 | 926 | 1342 | 3.85e-76 | 265 |
| Msa0029010 | MtrunA17_Chr2g0287781 | 39.716 | 423 | 213 | 9 | 186 | 594 | 3 | 397 | 9.86e-73 | 254 |
| Msa0029010 | MtrunA17_Chr2g0287781 | 44.660 | 206 | 88 | 6 | 1 | 181 | 1097 | 1301 | 4.12e-30 | 127 |
| Msa0029010 | MtrunA17_Chr4g0065581 | 41.920 | 427 | 220 | 9 | 209 | 615 | 33 | 451 | 9.37e-100 | 311 |
| Msa0029010 | MtrunA17_Chr4g0065581 | 44.393 | 214 | 82 | 6 | 3 | 181 | 192 | 403 | 6.66e-40 | 152 |
| Msa0029010 | MtrunA17_Chr7g0273041 | 39.693 | 456 | 236 | 15 | 182 | 619 | 1 | 435 | 1.76e-89 | 284 |
| Msa0029010 | MtrunA17_Chr7g0273041 | 31.818 | 220 | 96 | 10 | 1 | 182 | 184 | 387 | 1.57e-17 | 85.5 |
| Msa0029010 | MtrunA17_Chr2g0287811 | 39.863 | 439 | 219 | 10 | 191 | 614 | 13 | 421 | 2.45e-84 | 270 |
| Msa0029010 | MtrunA17_Chr2g0287811 | 44.175 | 206 | 89 | 6 | 1 | 181 | 175 | 379 | 1.51e-35 | 139 |
| Msa0029010 | MtrunA17_Chr2g0287831 | 37.831 | 415 | 222 | 11 | 212 | 619 | 26 | 411 | 2.00e-79 | 257 |
| Msa0029010 | MtrunA17_Chr2g0287831 | 37.736 | 212 | 93 | 5 | 1 | 187 | 172 | 369 | 3.17e-31 | 126 |
| Msa0029010 | MtrunA17_Chr2g0287861 | 40.000 | 400 | 203 | 9 | 209 | 593 | 27 | 404 | 2.82e-78 | 254 |
| Msa0029010 | MtrunA17_Chr2g0287861 | 41.827 | 208 | 90 | 5 | 1 | 181 | 174 | 377 | 1.68e-35 | 139 |
| Msa0029010 | MtrunA17_Chr2g0287841 | 37.939 | 427 | 236 | 9 | 175 | 593 | 23 | 428 | 4.51e-78 | 254 |
| Msa0029010 | MtrunA17_Chr2g0287841 | 40.580 | 207 | 90 | 7 | 3 | 181 | 200 | 401 | 7.01e-32 | 129 |
| Msa0029010 | MtrunA17_Chr7g0239001 | 25.063 | 399 | 225 | 17 | 235 | 603 | 68 | 422 | 8.37e-21 | 95.5 |
| Msa0029010 | MtrunA17_Chr7g0267171 | 26.714 | 423 | 209 | 21 | 227 | 601 | 91 | 460 | 9.36e-18 | 86.7 |
| Msa0029010 | MtrunA17_Chr5g0442921 | 23.789 | 454 | 264 | 16 | 188 | 602 | 139 | 549 | 1.65e-17 | 86.3 |
| Msa0029010 | MtrunA17_Chr3g0095891 | 22.402 | 433 | 265 | 13 | 204 | 602 | 59 | 454 | 9.89e-17 | 83.2 |
| Msa0029010 | MtrunA17_Chr4g0056211 | 23.414 | 457 | 246 | 17 | 213 | 611 | 65 | 475 | 1.73e-14 | 76.3 |
| Msa0029010 | MtrunA17_Chr2g0308001 | 25.821 | 457 | 250 | 21 | 189 | 612 | 8 | 408 | 2.51e-13 | 72.4 |
| Msa0029010 | MtrunA17_Chr3g0112051 | 21.990 | 382 | 220 | 15 | 240 | 604 | 87 | 407 | 3.98e-13 | 71.6 |
| Msa0029010 | MtrunA17_Chr8g0352671 | 22.871 | 411 | 234 | 17 | 226 | 614 | 89 | 438 | 5.70e-12 | 68.2 |
| Msa0029010 | MtrunA17_Chr3g0087851 | 23.913 | 414 | 239 | 19 | 210 | 604 | 78 | 434 | 1.09e-11 | 67.4 |
| Msa0029010 | MtrunA17_Chr5g0395911 | 25.377 | 398 | 235 | 15 | 226 | 609 | 67 | 416 | 1.15e-11 | 67.0 |
| Msa0029010 | MtrunA17_Chr1g0210201 | 22.782 | 417 | 239 | 15 | 206 | 602 | 110 | 463 | 1.29e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0029010 | AT1G03220.1 | 59.080 | 435 | 166 | 6 | 190 | 621 | 8 | 433 | 2.73e-170 | 492 |
| Msa0029010 | AT1G03220.1 | 56.459 | 209 | 64 | 4 | 1 | 182 | 176 | 384 | 2.20e-64 | 218 |
| Msa0029010 | AT1G03230.1 | 57.007 | 421 | 169 | 6 | 204 | 621 | 23 | 434 | 1.93e-158 | 462 |
| Msa0029010 | AT1G03230.1 | 50.239 | 209 | 77 | 4 | 1 | 182 | 177 | 385 | 2.33e-56 | 197 |
| Msa0029010 | AT5G19120.1 | 36.058 | 416 | 211 | 12 | 190 | 601 | 11 | 375 | 6.67e-57 | 197 |
| Msa0029010 | AT5G19120.1 | 33.503 | 197 | 99 | 5 | 3 | 186 | 173 | 350 | 1.40e-18 | 88.6 |
| Msa0029010 | AT5G19110.1 | 30.221 | 407 | 241 | 10 | 214 | 612 | 27 | 398 | 2.21e-46 | 169 |
| Msa0029010 | AT5G19110.1 | 28.718 | 195 | 100 | 6 | 14 | 181 | 175 | 357 | 1.89e-12 | 70.1 |
| Msa0029010 | AT5G19110.2 | 29.975 | 407 | 242 | 9 | 214 | 612 | 63 | 434 | 2.59e-46 | 170 |
| Msa0029010 | AT5G19110.2 | 28.718 | 195 | 100 | 6 | 14 | 181 | 211 | 393 | 2.28e-12 | 70.1 |
| Msa0029010 | AT5G48430.1 | 29.797 | 443 | 255 | 15 | 188 | 616 | 3 | 403 | 9.10e-45 | 164 |
| Msa0029010 | AT5G48430.1 | 32.701 | 211 | 99 | 8 | 1 | 183 | 165 | 360 | 4.36e-20 | 93.6 |
| Msa0029010 | AT5G19100.1 | 30.166 | 421 | 210 | 15 | 211 | 612 | 28 | 383 | 5.48e-40 | 151 |
| Msa0029010 | AT5G19100.1 | 32.292 | 192 | 109 | 8 | 3 | 182 | 161 | 343 | 1.78e-16 | 82.4 |
| Msa0029010 | AT2G39710.1 | 25.110 | 454 | 266 | 19 | 188 | 605 | 14 | 429 | 5.26e-21 | 96.7 |
| Msa0029010 | AT3G25700.1 | 24.057 | 424 | 237 | 16 | 216 | 603 | 72 | 446 | 3.21e-18 | 88.2 |
| Msa0029010 | AT5G02190.1 | 23.232 | 396 | 228 | 15 | 240 | 602 | 86 | 438 | 5.61e-16 | 81.3 |
| Msa0029010 | AT5G36260.1 | 22.093 | 430 | 257 | 15 | 204 | 603 | 49 | 430 | 3.09e-14 | 75.9 |
| Msa0029010 | AT1G09750.1 | 24.757 | 412 | 240 | 15 | 209 | 602 | 85 | 444 | 5.11e-14 | 75.1 |
| Msa0029010 | AT3G02740.2 | 23.515 | 404 | 230 | 16 | 227 | 603 | 10 | 361 | 1.20e-13 | 73.9 |
| Msa0029010 | AT3G02740.1 | 23.515 | 421 | 241 | 17 | 212 | 603 | 68 | 436 | 1.62e-13 | 73.9 |
| Msa0029010 | AT1G65240.1 | 22.907 | 454 | 255 | 19 | 181 | 603 | 34 | 423 | 1.62e-13 | 73.6 |
| Msa0029010 | AT3G59080.1 | 22.685 | 432 | 268 | 14 | 199 | 604 | 139 | 530 | 5.70e-13 | 72.0 |
| Msa0029010 | AT2G42980.1 | 24.048 | 420 | 247 | 16 | 215 | 604 | 145 | 522 | 7.16e-13 | 72.0 |
| Msa0029010 | AT3G59080.2 | 22.410 | 415 | 254 | 14 | 199 | 604 | 139 | 494 | 9.67e-12 | 68.2 |
| Msa0029010 | AT3G18490.1 | 23.753 | 421 | 248 | 18 | 199 | 602 | 132 | 496 | 5.28e-11 | 65.9 |
Find 137 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAGATGGAAGAGCGATTT+TGG | 0.145678 | 1_1:+54138672 | None:intergenic |
| GGACTTGCAGGTGGTGTTTC+TGG | 0.186198 | 1_1:-54138715 | Msa0029010:CDS |
| ACCAACACCTTTGTTATCTA+TGG | 0.210917 | 1_1:+54138366 | None:intergenic |
| TTGAGATGGAAGAGCAATTT+TGG | 0.214100 | 1_1:+54143070 | None:intergenic |
| CACAGCTTCAGCTTTCTTAC+AGG | 0.218031 | 1_1:-54138473 | Msa0029010:CDS |
| ATCTTGGCGGCAAATTTCTC+TGG | 0.254611 | 1_1:-54139029 | Msa0029010:CDS |
| GTGGGACTAGTGGGGTTCTT+TGG | 0.271955 | 1_1:+54139067 | None:intergenic |
| TTTGAATCAAATACAACGTT+AGG | 0.335283 | 1_1:+54138535 | None:intergenic |
| GCTTCTGGCATGGCTGGTCT+TGG | 0.335616 | 1_1:-54143098 | None:intergenic |
| AATGTGGTTTGGAGGATATT+TGG | 0.337063 | 1_1:-54142552 | Msa0029010:CDS |
| TGGGCGGAGGGGCACCGTGC+AGG | 0.342916 | 1_1:+54138967 | None:intergenic |
| TAATGTTCTGCAATTTGATT+TGG | 0.346515 | 1_1:-54138002 | Msa0029010:CDS |
| GTGTTGTTGCAGCCGGGTTT+TGG | 0.364296 | 1_1:+54138898 | None:intergenic |
| TGATTTGGCTGCGTCTAGAT+TGG | 0.371344 | 1_1:-54137987 | Msa0029010:CDS |
| TGCAAAATGAAAATGTGGTT+TGG | 0.372624 | 1_1:-54142563 | Msa0029010:CDS |
| AGTGGTGCTTCTGGCATGGC+TGG | 0.372982 | 1_1:-54143104 | None:intergenic |
| TCATTATTACGAGGACTTGC+AGG | 0.385904 | 1_1:-54138727 | Msa0029010:CDS |
| GCCACAAGTGTTGTTGCAGC+CGG | 0.388200 | 1_1:+54138891 | None:intergenic |
| GTTTCTGGTATGGCCGGTCT+TGG | 0.392106 | 1_1:-54138700 | Msa0029010:CDS |
| CTAAACCTTGTCGTCGATCT+TGG | 0.395447 | 1_1:-54139045 | Msa0029010:CDS |
| GGCGAGGGAACATTGGGCGG+AGG | 0.396694 | 1_1:+54138954 | None:intergenic |
| GCAAGGACTTCTATTGTGAT+TGG | 0.397805 | 1_1:-54138043 | Msa0029010:CDS |
| CGCAACAACACTACAATACT+TGG | 0.400949 | 1_1:-54139100 | Msa0029010:CDS |
| AAAGCTGAAGCTGTGCTAAC+AGG | 0.402137 | 1_1:+54138481 | None:intergenic |
| AAAGCAGAAGCTGTGCTAAC+AGG | 0.404309 | 1_1:+54142897 | None:intergenic |
| TGTAAAACAAGCTCAATTGT+AGG | 0.405286 | 1_1:+54138160 | None:intergenic |
| CGAGGGAACATTGGGCGGAG+GGG | 0.409566 | 1_1:+54138956 | None:intergenic |
| GACAGGGAGAACAAGTGCTT+TGG | 0.411543 | 1_1:+54139134 | None:intergenic |
| GGTTGAAACCGTTAGTTGAT+TGG | 0.415138 | 1_1:+54138800 | None:intergenic |
| ATCACCGCAGCTATCAGATT+TGG | 0.415998 | 1_1:+54138933 | None:intergenic |
| AATGTGATTTGGAGCATGTT+TGG | 0.420754 | 1_1:-54138133 | Msa0029010:CDS |
| CAACACTTGTGGCCTCATTC+CGG | 0.423581 | 1_1:-54138881 | Msa0029010:CDS |
| TCAGATGGTGTCATCATCTT+CGG | 0.425111 | 1_1:-54138598 | Msa0029010:CDS |
| GATTTGGCTGCGTCTAGATT+GGG | 0.428577 | 1_1:-54137986 | Msa0029010:CDS |
| TTGTGCCTTGGATTTGTTAA+CGG | 0.429586 | 1_1:-54138076 | Msa0029010:CDS |
| TCTTCCATCTCAACTAGCTT+CGG | 0.431750 | 1_1:-54143060 | Msa0029010:CDS |
| GGGCGGAGGGGCACCGTGCA+GGG | 0.432186 | 1_1:+54138968 | None:intergenic |
| TATTTGTCTTTCCTCTTCAA+AGG | 0.433460 | 1_1:-54143012 | Msa0029010:CDS |
| GCCAGGGACGCCATTGGGTG+CGG | 0.437893 | 1_1:-54138188 | Msa0029010:CDS |
| CAGATTTGGCGAGGGAACAT+TGG | 0.444677 | 1_1:+54138947 | None:intergenic |
| GCCGCACCCAATGGCGTCCC+TGG | 0.447294 | 1_1:+54138187 | None:intergenic |
| GATATTTGGTGCAAATTCAA+TGG | 0.448768 | 1_1:-54142538 | Msa0029010:CDS |
| TGTGATTGGAGGGTATCAAT+TGG | 0.454119 | 1_1:-54138029 | Msa0029010:CDS |
| GAAGCTTCTAAAACCGTGTA+AGG | 0.460673 | 1_1:+54138319 | None:intergenic |
| AGATTTGGCGAGGGAACATT+GGG | 0.461212 | 1_1:+54138948 | None:intergenic |
| AAACATAAAGAGGGTGGGTT+CGG | 0.467223 | 1_1:-54142664 | Msa0029010:CDS |
| CCACAAGTGTTGTTGCAGCC+GGG | 0.468413 | 1_1:+54138892 | None:intergenic |
| TTGTGTCTTGGAATTGTGAA+TGG | 0.468711 | 1_1:-54142495 | Msa0029010:CDS |
| ACAGGGAGAACAAGTGCTTT+GGG | 0.470267 | 1_1:+54139135 | None:intergenic |
| GCGAGGGAACATTGGGCGGA+GGG | 0.470700 | 1_1:+54138955 | None:intergenic |
| CAATTTGCCAGGGACGCCAT+TGG | 0.477486 | 1_1:-54138194 | Msa0029010:CDS |
| ATTTGTCTTTCCTCTTCAAA+GGG | 0.478971 | 1_1:-54143011 | Msa0029010:CDS |
| AATTTGCCAGGGACGCCATT+GGG | 0.481307 | 1_1:-54138193 | Msa0029010:CDS |
| TTATTCGGGGATGGACCTTA+CGG | 0.487213 | 1_1:-54142981 | Msa0029010:intron |
| AAACTATAACAAAATTCAAA+AGG | 0.494523 | 1_1:+54138220 | None:intergenic |
| CATGTTTGGTGCAAATTCAA+TGG | 0.495064 | 1_1:-54138119 | Msa0029010:CDS |
| TTGAATCAAATACAACGTTA+GGG | 0.495630 | 1_1:+54138536 | None:intergenic |
| AAAGCAGAAGCTAGTTGAGA+TGG | 0.497173 | 1_1:+54138658 | None:intergenic |
| AACCTTGTCGTCGATCTTGG+CGG | 0.500614 | 1_1:-54139042 | Msa0029010:CDS |
| TGCAGGTGGTGTTTCTGGTA+TGG | 0.503377 | 1_1:-54138710 | Msa0029010:CDS |
| AGATCGACGACAAGGTTTAG+TGG | 0.508860 | 1_1:+54139048 | None:intergenic |
| AGGACTTCTATTGTGATTGG+AGG | 0.508976 | 1_1:-54138040 | Msa0029010:CDS |
| TCTTGGCGGCAAATTTCTCT+GGG | 0.510646 | 1_1:-54139028 | Msa0029010:CDS |
| CTGTGTGTGATGGTGTTGTC+CGG | 0.512646 | 1_1:+54138862 | None:intergenic |
| CGGAGGGGCACCGTGCAGGG+TGG | 0.513517 | 1_1:+54138971 | None:intergenic |
| TCCATAGATAACAAAGGTGT+TGG | 0.518192 | 1_1:-54138367 | Msa0029010:CDS |
| AATGAAGAGCAATAAAAGAA+TGG | 0.521779 | 1_1:+54139188 | None:intergenic |
| AAAGAATGGAAATGAAGTGT+TGG | 0.528151 | 1_1:+54139202 | None:intergenic |
| ATAGATAACAAAGGTGTTGG+TGG | 0.528790 | 1_1:-54138364 | Msa0029010:CDS |
| GAAACCGTTAGTTGATTGGA+TGG | 0.531146 | 1_1:+54138804 | None:intergenic |
| AATGTGACTGGGACACGATT+GGG | 0.533667 | 1_1:-54142615 | Msa0029010:CDS |
| TTAGTGTAACAAAATTCAAA+AGG | 0.534186 | 1_1:+54142636 | None:intergenic |
| TAATGTGACTGGGACACGAT+TGG | 0.534463 | 1_1:-54142616 | Msa0029010:CDS |
| CAAGGTTTAGTGGGACTAGT+GGG | 0.538020 | 1_1:+54139058 | None:intergenic |
| ATAGACAACAACGGTGTTGG+TGG | 0.539185 | 1_1:-54142780 | Msa0029010:CDS |
| GGTGTCATCATCTTCGGTGA+TGG | 0.539955 | 1_1:-54138592 | Msa0029010:CDS |
| TCTATAGACAACAACGGTGT+TGG | 0.544980 | 1_1:-54142783 | Msa0029010:CDS |
| GGAAATGAAGTGTTGGAAGT+TGG | 0.546352 | 1_1:+54139209 | None:intergenic |
| CTAACAGGATTGATTAAAAG+TGG | 0.551878 | 1_1:+54138496 | None:intergenic |
| GATCGACGACAAGGTTTAGT+GGG | 0.553683 | 1_1:+54139049 | None:intergenic |
| AATGATTGTTGAGAGAAAGT+TGG | 0.555404 | 1_1:+54139162 | None:intergenic |
| AAAATGAAAATGTGGTTTGG+AGG | 0.560548 | 1_1:-54142560 | Msa0029010:CDS |
| AAAGCCGAAGCTAGTTGAGA+TGG | 0.563385 | 1_1:+54143056 | None:intergenic |
| GTCAAAAGGCATCTAGGCAG+TGG | 0.564064 | 1_1:+54137907 | None:intergenic |
| TTGGAAGTTGGTATTAGCCA+TGG | 0.566270 | 1_1:+54139221 | None:intergenic |
| GGTGGTGTTTCTGGTATGGC+CGG | 0.567424 | 1_1:-54138706 | Msa0029010:CDS |
| CTGCATCAAGAAACATAAAG+AGG | 0.567698 | 1_1:-54142674 | Msa0029010:CDS |
| GTAGGCACAGCCGCACCCAA+TGG | 0.568851 | 1_1:+54138178 | None:intergenic |
| AATGGTGAATATAAATGATG+AGG | 0.569327 | 1_1:-54138101 | Msa0029010:CDS |
| ACAGCTTCTGCTTTCTCACA+AGG | 0.569954 | 1_1:-54142888 | Msa0029010:CDS |
| CGCAGCTATCAGATTTGGCG+AGG | 0.570249 | 1_1:+54138938 | None:intergenic |
| TTAACGGTGGTGAGAATGCA+AGG | 0.571745 | 1_1:-54138060 | Msa0029010:CDS |
| TAAAACAACTCCCTTTGAAG+AGG | 0.576429 | 1_1:+54143001 | None:intergenic |
| CCTTCAGTCGAGTATTTCAT+CGG | 0.578005 | 1_1:-54138445 | Msa0029010:CDS |
| TTATCCATCCAATCAACTAA+CGG | 0.578852 | 1_1:-54138808 | Msa0029010:CDS |
| TGTCTTGGAATTGTGAATGG+TGG | 0.583429 | 1_1:-54142492 | Msa0029010:intron |
| TTTGTTACACTAATGTGACT+GGG | 0.589924 | 1_1:-54142626 | Msa0029010:CDS |
| GGACTTCTATTGTGATTGGA+GGG | 0.590002 | 1_1:-54138039 | Msa0029010:CDS |
| CCTTCAGCCGAGTATTTCAT+CGG | 0.590645 | 1_1:-54142861 | Msa0029010:CDS |
| TTTGGCGAGGGAACATTGGG+CGG | 0.591287 | 1_1:+54138951 | None:intergenic |
| CCCGGCTGCAACAACACTTG+TGG | 0.592020 | 1_1:-54138892 | Msa0029010:CDS |
| TGGTGGAACAAAGATTAGTA+CGG | 0.593903 | 1_1:-54138347 | Msa0029010:CDS |
| ACAGCTTCAGCTTTCTTACA+GGG | 0.596772 | 1_1:-54138472 | Msa0029010:CDS |
| ATCAAGAAACATAAAGAGGG+TGG | 0.598242 | 1_1:-54142670 | Msa0029010:CDS |
| TGCCGCCAAGATCGACGACA+AGG | 0.599774 | 1_1:+54139040 | None:intergenic |
| ACGAGTACCGCTGTGTGTGA+TGG | 0.599860 | 1_1:+54138852 | None:intergenic |
| CCGTGCAGGGTGGTATGTAG+AGG | 0.605441 | 1_1:+54138981 | None:intergenic |
| TTTCACGCCGATGAAATACT+CGG | 0.606909 | 1_1:+54142854 | None:intergenic |
| TTGTCAGCGAGAAAACTGTA+AGG | 0.611491 | 1_1:+54138568 | None:intergenic |
| CCGATGAAATACTCGACTGA+AGG | 0.615446 | 1_1:+54138445 | None:intergenic |
| CCGATGAAATACTCGGCTGA+AGG | 0.617301 | 1_1:+54142861 | None:intergenic |
| TGATGGTGTTGTCCGGAATG+AGG | 0.617996 | 1_1:+54138869 | None:intergenic |
| TCAACTAACGGTTTCAACCC+AGG | 0.620038 | 1_1:-54138796 | Msa0029010:CDS |
| TGCCTTGGATTTGTTAACGG+TGG | 0.620484 | 1_1:-54138073 | Msa0029010:CDS |
| TGTTTCTCATCACCAAAACC+CGG | 0.623510 | 1_1:-54138910 | Msa0029010:CDS |
| TCAAGAAACATAAAGAGGGT+GGG | 0.624748 | 1_1:-54142669 | Msa0029010:CDS |
| CACCACCGTTAACAAATCCA+AGG | 0.627497 | 1_1:+54138071 | None:intergenic |
| TGCATCAAGAAACATAAAGA+GGG | 0.629404 | 1_1:-54142673 | Msa0029010:CDS |
| CCTCTACATACCACCCTGCA+CGG | 0.636015 | 1_1:-54138981 | Msa0029010:CDS |
| ATCACACACAGCGGTACTCG+TGG | 0.636321 | 1_1:-54138850 | Msa0029010:CDS |
| AGTCCTCGTAATAATGAAGT+CGG | 0.639305 | 1_1:+54138733 | None:intergenic |
| ACAAGGTTTAGTGGGACTAG+TGG | 0.642896 | 1_1:+54139057 | None:intergenic |
| AAAAGGCATCTAGGCAGTGG+AGG | 0.650082 | 1_1:+54137910 | None:intergenic |
| AAGGTTTAGTGGGACTAGTG+GGG | 0.651701 | 1_1:+54139059 | None:intergenic |
| CTCGCCAAATCTGATAGCTG+CGG | 0.652873 | 1_1:-54138937 | Msa0029010:CDS |
| TTATTACGAGGACTTGCAGG+TGG | 0.658112 | 1_1:-54138724 | Msa0029010:CDS |
| CTAACAGGATTGATCAAAAG+CGG | 0.665242 | 1_1:+54142912 | None:intergenic |
| GCAGCTATCAGATTTGGCGA+GGG | 0.669308 | 1_1:+54138939 | None:intergenic |
| CTATAACAAAATTCAAAAGG+CGG | 0.670292 | 1_1:+54138223 | None:intergenic |
| GGTATGTAGAGGAAGTGTAG+TGG | 0.694005 | 1_1:+54138992 | None:intergenic |
| TAGTACGGTTGATCCTTACA+CGG | 0.695224 | 1_1:-54138332 | Msa0029010:CDS |
| TTGTTGTCCATAGATAACAA+AGG | 0.718706 | 1_1:-54138373 | Msa0029010:CDS |
| GCACCGACTTCATTATTACG+AGG | 0.720950 | 1_1:-54138736 | Msa0029010:CDS |
| TGCAAGAAACATAACGACGG+AGG | 0.729033 | 1_1:-54138254 | Msa0029010:CDS |
| GACAACACCATCACACACAG+CGG | 0.735989 | 1_1:-54138859 | Msa0029010:CDS |
| TTGTTGTCTATAGACAACAA+CGG | 0.764264 | 1_1:-54142789 | Msa0029010:CDS |
| TGTTGCAAGAAACATAACGA+CGG | 0.769802 | 1_1:-54138257 | Msa0029010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTTTTAATAATA+AGG | - | chr1_1:54141093-54141112 | Msa0029010:intron | 0.0% |
| !!! | ATTATTTTAATTTTTGATTG+AGG | + | chr1_1:54139063-54139082 | None:intergenic | 10.0% |
| !! | CAAATATAATTAAATATTGA+TGG | + | chr1_1:54139337-54139356 | None:intergenic | 10.0% |
| !!! | AATCTATCTATTATTTATTT+TGG | + | chr1_1:54139736-54139755 | None:intergenic | 10.0% |
| !! | AAATGATAAATTAATGTTTA+TGG | - | chr1_1:54140378-54140397 | Msa0029010:intron | 10.0% |
| !! | TTAAAAAAACAAGATTAAAT+AGG | + | chr1_1:54140601-54140620 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTGCTTATAATT+TGG | - | chr1_1:54140823-54140842 | Msa0029010:intron | 10.0% |
| !!! | TTTTTTTTTGCTTATAATTT+GGG | - | chr1_1:54140824-54140843 | Msa0029010:intron | 10.0% |
| !! | AAGATCAAATAAATAGTTAA+AGG | + | chr1_1:54139250-54139269 | None:intergenic | 15.0% |
| !!! | CAAATGAATTCTTTTTTTTA+CGG | - | chr1_1:54139815-54139834 | Msa0029010:intron | 15.0% |
| !!! | TTTTTTTTTTGACAAGTTTA+TGG | - | chr1_1:54140412-54140431 | Msa0029010:intron | 15.0% |
| !! | TTATTAACTAGTTATAGTTT+AGG | - | chr1_1:54140443-54140462 | Msa0029010:intron | 15.0% |
| !!! | GTTTTTTTTGCTTATATTAT+GGG | + | chr1_1:54140532-54140551 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTGCTTATATTA+TGG | + | chr1_1:54140533-54140552 | None:intergenic | 15.0% |
| !! | AAAACTAAAACATAAGAATT+TGG | + | chr1_1:54140789-54140808 | None:intergenic | 15.0% |
| !! | AGTAATAAATGTATATTGAT+GGG | - | chr1_1:54140855-54140874 | Msa0029010:intron | 15.0% |
| !! | GTAAAATAATTAATGTTTCA+AGG | - | chr1_1:54140877-54140896 | Msa0029010:intron | 15.0% |
| !!! | TTTTAATGAATTATTAGACA+AGG | - | chr1_1:54141236-54141255 | Msa0029010:intron | 15.0% |
| !! | AAACTATAACAAAATTCAAA+AGG | + | chr1_1:54142791-54142810 | None:intergenic | 15.0% |
| !! | TTAGTGTAACAAAATTCAAA+AGG | + | chr1_1:54138375-54138394 | None:intergenic | 20.0% |
| !!! | TTTTTTGCAAAATGAAAATG+TGG | - | chr1_1:54138440-54138459 | Msa0029010:CDS | 20.0% |
| !!! | GTATAAAAAAATGCTGATTT+GGG | + | chr1_1:54138707-54138726 | None:intergenic | 20.0% |
| !!! | AGTATAAAAAAATGCTGATT+TGG | + | chr1_1:54138708-54138727 | None:intergenic | 20.0% |
| !! | ATGCAATTTATTATGAACAA+AGG | + | chr1_1:54138775-54138794 | None:intergenic | 20.0% |
| !!! | TTTTCCCTTTTTTATACAAA+TGG | - | chr1_1:54138854-54138873 | Msa0029010:CDS | 20.0% |
| !!! | GCATCATATATTTTTTACAA+TGG | - | chr1_1:54139010-54139029 | Msa0029010:CDS | 20.0% |
| !!! | TATTTTTTACAATGGTAAGT+TGG | - | chr1_1:54139018-54139037 | Msa0029010:CDS | 20.0% |
| !! | ATAGAACAAAAACTAATCAA+GGG | + | chr1_1:54139283-54139302 | None:intergenic | 20.0% |
| !! | AATAGAACAAAAACTAATCA+AGG | + | chr1_1:54139284-54139303 | None:intergenic | 20.0% |
| !!! | GATTAGTTTTTGTTCTATTT+TGG | - | chr1_1:54139285-54139304 | Msa0029010:intron | 20.0% |
| !! | TATAAGAGTAAAACCAATTT+AGG | - | chr1_1:54139599-54139618 | Msa0029010:intron | 20.0% |
| !! | ATTGAAAAGAAGAAAAGTTA+AGG | - | chr1_1:54139629-54139648 | Msa0029010:intron | 20.0% |
| !! | CGTAAAAAAAAGAATTCATT+TGG | + | chr1_1:54139817-54139836 | None:intergenic | 20.0% |
| !! | AGACAACTCATTATTATATA+TGG | + | chr1_1:54139879-54139898 | None:intergenic | 20.0% |
| !! | AATAGTTGTTGGATTAAAAT+TGG | + | chr1_1:54140192-54140211 | None:intergenic | 20.0% |
| !!! | GAATAAACAAAAGTTTTTCT+TGG | + | chr1_1:54140636-54140655 | None:intergenic | 20.0% |
| !!! | GATGTAAAAACAATTTTCAT+TGG | + | chr1_1:54140723-54140742 | None:intergenic | 20.0% |
| !!! | ATAGTTTTTTGTGTTTTCTT+TGG | + | chr1_1:54140763-54140782 | None:intergenic | 20.0% |
| !! | GAGTAATAAATGTATATTGA+TGG | - | chr1_1:54140854-54140873 | Msa0029010:intron | 20.0% |
| !!! | AAGACTTTTAGTTTTTTATG+AGG | + | chr1_1:54141286-54141305 | None:intergenic | 20.0% |
| !!! | TTGTACACAATAGTTTTTTT+AGG | - | chr1_1:54141541-54141560 | Msa0029010:intron | 20.0% |
| !!! | TGTACACAATAGTTTTTTTA+GGG | - | chr1_1:54141542-54141561 | Msa0029010:intron | 20.0% |
| !! | GTGAAAACAATAAAAATTGA+TGG | - | chr1_1:54142587-54142606 | Msa0029010:CDS | 20.0% |
| !! | AATAAAAATTGATGGAAAAG+TGG | - | chr1_1:54142595-54142614 | Msa0029010:CDS | 20.0% |
| !! | GTAAATAGAAGCTTCTAAAA+CGG | + | chr1_1:54138283-54138302 | None:intergenic | 25.0% |
| ! | AAAAGGGAAAATACATTCTT+TGG | + | chr1_1:54138845-54138864 | None:intergenic | 25.0% |
| ! | CCAACCATTTGTATAAAAAA+GGG | + | chr1_1:54138861-54138880 | None:intergenic | 25.0% |
| ! | ACCAACCATTTGTATAAAAA+AGG | + | chr1_1:54138862-54138881 | None:intergenic | 25.0% |
| !!! | TTGATTTGAGTTGTGTTATA+TGG | - | chr1_1:54139150-54139169 | Msa0029010:CDS | 25.0% |
| ! | TGATCAAACCAAAAATGATT+TGG | - | chr1_1:54139384-54139403 | Msa0029010:intron | 25.0% |
| !! | TTACTACACCAAATCATTTT+TGG | + | chr1_1:54139395-54139414 | None:intergenic | 25.0% |
| !!! | TTGGTGTAGTAATTGATTTT+AGG | - | chr1_1:54139403-54139422 | Msa0029010:intron | 25.0% |
| !!! | TGAAGAGTTTAAGTTTTGTT+CGG | - | chr1_1:54139554-54139573 | Msa0029010:intron | 25.0% |
| ! | TTCAATACACTTACCTAAAT+TGG | + | chr1_1:54139615-54139634 | None:intergenic | 25.0% |
| !!! | CTCAAGGTTTGTTTTTTATA+CGG | - | chr1_1:54139770-54139789 | Msa0029010:intron | 25.0% |
| ! | GAAAATGTATCAATAGTTGT+TGG | + | chr1_1:54140203-54140222 | None:intergenic | 25.0% |
| ! | GAATCATTGATACACTTATA+CGG | - | chr1_1:54140235-54140254 | Msa0029010:intron | 25.0% |
| ! | TTAACTAGTTATAGTTTAGG+TGG | - | chr1_1:54140446-54140465 | Msa0029010:intron | 25.0% |
| ! | AAAAACTAGTTATAGTACAG+TGG | - | chr1_1:54140481-54140500 | Msa0029010:intron | 25.0% |
| !! | TTTTTGCTTATATTATGGGA+CGG | + | chr1_1:54140528-54140547 | None:intergenic | 25.0% |
| !!! | AAACAATTTTCATTGGCTAT+TGG | + | chr1_1:54140716-54140735 | None:intergenic | 25.0% |
| !! | TTCTTTGGAAAAAGTTTCAT+AGG | + | chr1_1:54140748-54140767 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATTTGGGA+CGG | - | chr1_1:54140828-54140847 | Msa0029010:intron | 25.0% |
| ! | TTACATAACTTAGAGATTGT+TGG | - | chr1_1:54140993-54141012 | Msa0029010:intron | 25.0% |
| ! | TATCTCGAGAAATTCTAATA+TGG | - | chr1_1:54141027-54141046 | Msa0029010:intron | 25.0% |
| !!! | TTGACATGTTACTAGTTTTT+TGG | + | chr1_1:54141319-54141338 | None:intergenic | 25.0% |
| ! | TAACATGTCAAGATATTGTA+GGG | - | chr1_1:54141328-54141347 | Msa0029010:intron | 25.0% |
| ! | TCTAACATACACAAGTAAAA+TGG | - | chr1_1:54141390-54141409 | Msa0029010:intron | 25.0% |
| ! | GTAAAAAATGTATTTGTGCA+TGG | + | chr1_1:54141423-54141442 | None:intergenic | 25.0% |
| !! | GATGATTTTTCTTGATTTAG+TGG | - | chr1_1:54141484-54141503 | Msa0029010:intron | 25.0% |
| ! | GTGTACAAATGAGAAAATAT+TGG | + | chr1_1:54141529-54141548 | None:intergenic | 25.0% |
| !!! | GTACACAATAGTTTTTTTAG+GGG | - | chr1_1:54141543-54141562 | Msa0029010:intron | 25.0% |
| !!! | TATTTTTGTGGCCAATTTTA+TGG | + | chr1_1:54141576-54141595 | None:intergenic | 25.0% |
| !!! | TGATTGCTACATTATTTTTG+TGG | + | chr1_1:54141588-54141607 | None:intergenic | 25.0% |
| ! | AAAATAGATAGATGTTGAGT+TGG | + | chr1_1:54141751-54141770 | None:intergenic | 25.0% |
| ! | AATGAAGAGCAATAAAAGAA+TGG | + | chr1_1:54141823-54141842 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTTCTTCTTCAGA+TGG | - | chr1_1:54142395-54142414 | Msa0029010:intron | 25.0% |
| ! | TTGAATCAAATACAACGTTA+GGG | + | chr1_1:54142475-54142494 | None:intergenic | 25.0% |
| ! | TTTGAATCAAATACAACGTT+AGG | + | chr1_1:54142476-54142495 | None:intergenic | 25.0% |
| ! | CTATAACAAAATTCAAAAGG+CGG | + | chr1_1:54142788-54142807 | None:intergenic | 25.0% |
| !! | TTTTACAGAACAATGTGATT+TGG | - | chr1_1:54142864-54142883 | Msa0029010:CDS | 25.0% |
| ! | AATGGTGAATATAAATGATG+AGG | - | chr1_1:54138488-54138507 | Msa0029010:CDS | 25.0% |
| ! | TAATGTTCTGCAATTTGATT+TGG | - | chr1_1:54143006-54143025 | Msa0029010:CDS | 25.0% |
| TATTTGTCTTTCCTCTTCAA+AGG | - | chr1_1:54137996-54138015 | Msa0029010:CDS | 30.0% | |
| ATTTGTCTTTCCTCTTCAAA+GGG | - | chr1_1:54137997-54138016 | Msa0029010:CDS | 30.0% | |
| !! | TCAAAGGGAGTTGTTTTATT+CGG | - | chr1_1:54138012-54138031 | Msa0029010:CDS | 30.0% |
| TCTGAATCAAGAACAATGTT+GGG | + | chr1_1:54138060-54138079 | None:intergenic | 30.0% | |
| TTGTTGTCTATAGACAACAA+CGG | - | chr1_1:54138219-54138238 | Msa0029010:CDS | 30.0% | |
| TGCATCAAGAAACATAAAGA+GGG | - | chr1_1:54138335-54138354 | Msa0029010:CDS | 30.0% | |
| ! | TTTTGTTACACTAATGTGAC+TGG | - | chr1_1:54138381-54138400 | Msa0029010:CDS | 30.0% |
| TTTGTTACACTAATGTGACT+GGG | - | chr1_1:54138382-54138401 | Msa0029010:CDS | 30.0% | |
| TGCAAAAAAAGCTCAATAGT+AGG | + | chr1_1:54138429-54138448 | None:intergenic | 30.0% | |
| TGCAAAATGAAAATGTGGTT+TGG | - | chr1_1:54138445-54138464 | Msa0029010:CDS | 30.0% | |
| ! | AAAATGAAAATGTGGTTTGG+AGG | - | chr1_1:54138448-54138467 | Msa0029010:CDS | 30.0% |
| !! | GATATTTGGTGCAAATTCAA+TGG | - | chr1_1:54138470-54138489 | Msa0029010:CDS | 30.0% |
| !! | AATGATGAAGTTTTGTGTCT+TGG | - | chr1_1:54138501-54138520 | Msa0029010:CDS | 30.0% |
| TGAATGGTGGTAAAAATACA+AGG | - | chr1_1:54138529-54138548 | Msa0029010:CDS | 30.0% | |
| ACAAGGACTTCAATTGTAAT+TGG | - | chr1_1:54138546-54138565 | Msa0029010:CDS | 30.0% | |
| CAATCTTCTGCAATTTGATT+TGG | - | chr1_1:54138587-54138606 | Msa0029010:CDS | 30.0% | |
| !! | ATTTGGGAAAAAAAGCATCT+AGG | + | chr1_1:54138691-54138710 | None:intergenic | 30.0% |
| ATTGCATTGAAGTTCATGTA+TGG | - | chr1_1:54138788-54138807 | Msa0029010:CDS | 30.0% | |
| !!! | CCCTTTTTTATACAAATGGT+TGG | - | chr1_1:54138858-54138877 | Msa0029010:CDS | 30.0% |
| ! | ATTTGCTTAGGTTTTTGTCT+TGG | + | chr1_1:54138917-54138936 | None:intergenic | 30.0% |
| AGCAAATACAGTATTTGCTT+AGG | + | chr1_1:54138929-54138948 | None:intergenic | 30.0% | |
| ! | TCTGTTCATATTGACTACTT+TGG | - | chr1_1:54138986-54139005 | Msa0029010:CDS | 30.0% |
| TATTCGACAAACCAATCAAA+TGG | + | chr1_1:54139201-54139220 | None:intergenic | 30.0% | |
| AATAGTGATCAAGCCAAAAA+TGG | - | chr1_1:54139450-54139469 | Msa0029010:intron | 30.0% | |
| !!! | GAAGAGTTTAAGTTTTGTTC+GGG | - | chr1_1:54139555-54139574 | Msa0029010:intron | 30.0% |
| CAAGGTAAATACTCATACTA+GGG | + | chr1_1:54139930-54139949 | None:intergenic | 30.0% | |
| ATGGAAGAGCTAAATGAATT+TGG | + | chr1_1:54140269-54140288 | None:intergenic | 30.0% | |
| CTTCCATAATTGAAGTTGAA+AGG | - | chr1_1:54140282-54140301 | Msa0029010:intron | 30.0% | |
| TCACCTTTCAACTTCAATTA+TGG | + | chr1_1:54140288-54140307 | None:intergenic | 30.0% | |
| AAAATACAAGCGAATGCTAA+CGG | + | chr1_1:54140336-54140355 | None:intergenic | 30.0% | |
| TAGTTATAGTTTAGGTGGAT+CGG | - | chr1_1:54140451-54140470 | Msa0029010:intron | 30.0% | |
| !! | TTTTCATTGGCTATTGGTTA+TGG | + | chr1_1:54140710-54140729 | None:intergenic | 30.0% |
| AAATAATTGTCTGTCTCGAA+TGG | + | chr1_1:54140925-54140944 | None:intergenic | 30.0% | |
| GAGATGGATGAATCATTAAA+AGG | - | chr1_1:54140963-54140982 | Msa0029010:intron | 30.0% | |
| ATAACTTAGAGATTGTTGGT+TGG | - | chr1_1:54140997-54141016 | Msa0029010:intron | 30.0% | |
| AGAAATTCTAATATGGTCAC+AGG | - | chr1_1:54141034-54141053 | Msa0029010:intron | 30.0% | |
| AGGACTAAAGAAATAGTGTT+TGG | - | chr1_1:54141054-54141073 | Msa0029010:intron | 30.0% | |
| GTAACATGTCAAGATATTGT+AGG | - | chr1_1:54141327-54141346 | Msa0029010:intron | 30.0% | |
| TCTCATTAACGAATCAACAA+TGG | - | chr1_1:54141670-54141689 | Msa0029010:intron | 30.0% | |
| ATTTATACTTGGGATTGAGT+GGG | + | chr1_1:54141704-54141723 | None:intergenic | 30.0% | |
| TATTTATACTTGGGATTGAG+TGG | + | chr1_1:54141705-54141724 | None:intergenic | 30.0% | |
| AGGCAACTCTATTTATACTT+GGG | + | chr1_1:54141714-54141733 | None:intergenic | 30.0% | |
| AAAGAATGGAAATGAAGTGT+TGG | + | chr1_1:54141809-54141828 | None:intergenic | 30.0% | |
| AATGATTGTTGAGAGAAAGT+TGG | + | chr1_1:54141849-54141868 | None:intergenic | 30.0% | |
| TTATCCATCCAATCAACTAA+CGG | - | chr1_1:54142200-54142219 | Msa0029010:intron | 30.0% | |
| ! | AAACAACTACATTTTGTCCT+GGG | + | chr1_1:54142232-54142251 | None:intergenic | 30.0% |
| CTAACAGGATTGATTAAAAG+TGG | + | chr1_1:54142515-54142534 | None:intergenic | 30.0% | |
| TTGTTGTCCATAGATAACAA+AGG | - | chr1_1:54142635-54142654 | Msa0029010:CDS | 30.0% | |
| !!! | TATAGTTTTGACAATTTGCC+AGG | - | chr1_1:54142803-54142822 | Msa0029010:CDS | 30.0% |
| !!! | ATAGTTTTGACAATTTGCCA+GGG | - | chr1_1:54142804-54142823 | Msa0029010:CDS | 30.0% |
| TGTAAAACAAGCTCAATTGT+AGG | + | chr1_1:54142851-54142870 | None:intergenic | 30.0% | |
| ! | TTGAGATGGAAGAGCAATTT+TGG | + | chr1_1:54137941-54137960 | None:intergenic | 35.0% |
| ! | TAAAACAACTCCCTTTGAAG+AGG | + | chr1_1:54138010-54138029 | None:intergenic | 35.0% |
| !! | CAAAGGGAGTTGTTTTATTC+GGG | - | chr1_1:54138013-54138032 | Msa0029010:CDS | 35.0% |
| !! | AAAGGGAGTTGTTTTATTCG+GGG | - | chr1_1:54138014-54138033 | Msa0029010:CDS | 35.0% |
| GTCTGAATCAAGAACAATGT+TGG | + | chr1_1:54138061-54138080 | None:intergenic | 35.0% | |
| CTAACAGGATTGATCAAAAG+CGG | + | chr1_1:54138099-54138118 | None:intergenic | 35.0% | |
| TGGTGGAACAAAGATTAGTA+CGG | - | chr1_1:54138245-54138264 | Msa0029010:CDS | 35.0% | |
| CTGCATCAAGAAACATAAAG+AGG | - | chr1_1:54138334-54138353 | Msa0029010:CDS | 35.0% | |
| ATCAAGAAACATAAAGAGGG+TGG | - | chr1_1:54138338-54138357 | Msa0029010:CDS | 35.0% | |
| TCAAGAAACATAAAGAGGGT+GGG | - | chr1_1:54138339-54138358 | Msa0029010:CDS | 35.0% | |
| ! | AATGTGGTTTGGAGGATATT+TGG | - | chr1_1:54138456-54138475 | Msa0029010:CDS | 35.0% |
| TTGTGTCTTGGAATTGTGAA+TGG | - | chr1_1:54138513-54138532 | Msa0029010:CDS | 35.0% | |
| AGGACTTCAATTGTAATTGG+AGG | - | chr1_1:54138549-54138568 | Msa0029010:CDS | 35.0% | |
| GGACTTCAATTGTAATTGGA+GGG | - | chr1_1:54138550-54138569 | Msa0029010:CDS | 35.0% | |
| ! | TGATTTGGCTGCTTCTAAAT+TGG | - | chr1_1:54138602-54138621 | Msa0029010:CDS | 35.0% |
| GATTTGGCTGCTTCTAAATT+GGG | - | chr1_1:54138603-54138622 | Msa0029010:CDS | 35.0% | |
| AGTTCATGTATGGTTTGACA+AGG | - | chr1_1:54138798-54138817 | Msa0029010:CDS | 35.0% | |
| TATATGGATATGACGTGTGA+TGG | - | chr1_1:54139166-54139185 | Msa0029010:CDS | 35.0% | |
| ATATGGATATGACGTGTGAT+GGG | - | chr1_1:54139167-54139186 | Msa0029010:CDS | 35.0% | |
| ! | GATCAAGCCAAAAATGGATT+TGG | - | chr1_1:54139456-54139475 | Msa0029010:intron | 35.0% |
| ! | TGTCACTCCAAATCCATTTT+TGG | + | chr1_1:54139466-54139485 | None:intergenic | 35.0% |
| ! | GAAGAGACTTTTCTGTTAAG+CGG | + | chr1_1:54139661-54139680 | None:intergenic | 35.0% |
| ! | TTTGAAGTTCGAAGATCTCA+AGG | - | chr1_1:54139754-54139773 | Msa0029010:intron | 35.0% |
| GCAAGGTAAATACTCATACT+AGG | + | chr1_1:54139931-54139950 | None:intergenic | 35.0% | |
| CCTAATATGACACCTCATAA+TGG | + | chr1_1:54139968-54139987 | None:intergenic | 35.0% | |
| ! | CCATTATGAGGTGTCATATT+AGG | - | chr1_1:54139965-54139984 | Msa0029010:intron | 35.0% |
| AAATACAAGCGAATGCTAAC+GGG | + | chr1_1:54140335-54140354 | None:intergenic | 35.0% | |
| AAGAAATGCCTATGATGAGA+TGG | - | chr1_1:54140947-54140966 | Msa0029010:intron | 35.0% | |
| TGATTCATCCATCTCATCAT+AGG | + | chr1_1:54140958-54140977 | None:intergenic | 35.0% | |
| ! | GAAGAGAATCTTTTTGTGTG+TGG | - | chr1_1:54141149-54141168 | Msa0029010:intron | 35.0% |
| ! | CAAGATTTGCTTAGAGATAC+AGG | + | chr1_1:54141199-54141218 | None:intergenic | 35.0% |
| !! | TGTTGATTCGTTAATGAGAG+TGG | + | chr1_1:54141669-54141688 | None:intergenic | 35.0% |
| GAGGCAACTCTATTTATACT+TGG | + | chr1_1:54141715-54141734 | None:intergenic | 35.0% | |
| TCCATATATATCTCTAGCCA+TGG | - | chr1_1:54141770-54141789 | Msa0029010:intron | 35.0% | |
| ! | GAAACAACTACATTTTGTCC+TGG | + | chr1_1:54142233-54142252 | None:intergenic | 35.0% |
| AGTCCTCGTAATAATGAAGT+CGG | + | chr1_1:54142278-54142297 | None:intergenic | 35.0% | |
| ! | TCCATAGATAACAAAGGTGT+TGG | - | chr1_1:54142641-54142660 | Msa0029010:CDS | 35.0% |
| ! | ACCAACACCTTTGTTATCTA+TGG | + | chr1_1:54142645-54142664 | None:intergenic | 35.0% |
| !! | ATAGATAACAAAGGTGTTGG+TGG | - | chr1_1:54142644-54142663 | Msa0029010:CDS | 35.0% |
| TGGTGGAACAAAGATTAGTA+CGG | - | chr1_1:54138245-54138264 | Msa0029010:CDS | 35.0% | |
| TGTTGCAAGAAACATAACGA+CGG | - | chr1_1:54142751-54142770 | Msa0029010:intron | 35.0% | |
| ! | AATGTGATTTGGAGCATGTT+TGG | - | chr1_1:54142875-54142894 | Msa0029010:CDS | 35.0% |
| !! | CATGTTTGGTGCAAATTCAA+TGG | - | chr1_1:54142889-54142908 | Msa0029010:CDS | 35.0% |
| !! | TTGTGCCTTGGATTTGTTAA+CGG | - | chr1_1:54142932-54142951 | Msa0029010:CDS | 35.0% |
| ! | TCTTCCATCTCAACTAGCTT+CGG | - | chr1_1:54137948-54137967 | Msa0029010:CDS | 40.0% |
| ATGTTGGGAAGAAAACCGTA+AGG | + | chr1_1:54138045-54138064 | None:intergenic | 40.0% | |
| TTTCACGCCGATGAAATACT+CGG | + | chr1_1:54138157-54138176 | None:intergenic | 40.0% | |
| TCTATAGACAACAACGGTGT+TGG | - | chr1_1:54138225-54138244 | Msa0029010:CDS | 40.0% | |
| !! | GAAGCTTCTAAAACGGTGTA+AGG | + | chr1_1:54138276-54138295 | None:intergenic | 40.0% |
| ! | AAACATAAAGAGGGTGGGTT+CGG | - | chr1_1:54138344-54138363 | Msa0029010:CDS | 40.0% |
| TGTCTTGGAATTGTGAATGG+TGG | - | chr1_1:54138516-54138535 | Msa0029010:CDS | 40.0% | |
| !! | TGTAATTGGAGGGTATCAGT+TGG | - | chr1_1:54138560-54138579 | Msa0029010:CDS | 40.0% |
| !! | GAAAAAAAGCATCTAGGCAG+TGG | + | chr1_1:54138685-54138704 | None:intergenic | 40.0% |
| ACACATGACTAGGTTCGATT+TGG | + | chr1_1:54139847-54139866 | None:intergenic | 40.0% | |
| GAAGAAAGTCACACATGACT+AGG | + | chr1_1:54139857-54139876 | None:intergenic | 40.0% | |
| ! | AGGGTACTCACAATGTAGTT+TGG | + | chr1_1:54139911-54139930 | None:intergenic | 40.0% |
| ! | TCGTTGATTGTGTGAATGTG+TGG | + | chr1_1:54140072-54140091 | None:intergenic | 40.0% |
| TGCTTATATTATGGGACGGA+GGG | + | chr1_1:54140524-54140543 | None:intergenic | 40.0% | |
| TTGCTTATATTATGGGACGG+AGG | + | chr1_1:54140525-54140544 | None:intergenic | 40.0% | |
| ! | TTGCTTATAATTTGGGACGG+AGG | - | chr1_1:54140831-54140850 | Msa0029010:intron | 40.0% |
| ! | TGCTTATAATTTGGGACGGA+GGG | - | chr1_1:54140832-54140851 | Msa0029010:intron | 40.0% |
| ! | GATTTGCTTAGAGATACAGG+AGG | + | chr1_1:54141196-54141215 | None:intergenic | 40.0% |
| GGGGTTGTACACCATAAAAT+TGG | - | chr1_1:54141562-54141581 | Msa0029010:intron | 40.0% | |
| !! | AGATAGATGTTGAGTTGGAG+AGG | + | chr1_1:54141746-54141765 | None:intergenic | 40.0% |
| GCCATGGCTAGAGATATATA+TGG | + | chr1_1:54141774-54141793 | None:intergenic | 40.0% | |
| !! | TTGGAAGTTGGTATTAGCCA+TGG | + | chr1_1:54141790-54141809 | None:intergenic | 40.0% |
| !! | GGAAATGAAGTGTTGGAAGT+TGG | + | chr1_1:54141802-54141821 | None:intergenic | 40.0% |
| ! | TTGCGCTATCTTTTGTGACA+GGG | + | chr1_1:54141893-54141912 | None:intergenic | 40.0% |
| CGCAACAACACTACAATACT+TGG | - | chr1_1:54141908-54141927 | Msa0029010:intron | 40.0% | |
| TGTTTCTCATCACCAAAACC+CGG | - | chr1_1:54142098-54142117 | Msa0029010:intron | 40.0% | |
| GAAACCGTTAGTTGATTGGA+TGG | + | chr1_1:54142207-54142226 | None:intergenic | 40.0% | |
| GGTTGAAACCGTTAGTTGAT+TGG | + | chr1_1:54142211-54142230 | None:intergenic | 40.0% | |
| TCATTATTACGAGGACTTGC+AGG | - | chr1_1:54142281-54142300 | Msa0029010:intron | 40.0% | |
| ! | TGAGATGGAAGAGCGATTTT+GGG | + | chr1_1:54142338-54142357 | None:intergenic | 40.0% |
| ! | TTGAGATGGAAGAGCGATTT+TGG | + | chr1_1:54142339-54142358 | None:intergenic | 40.0% |
| AAAGCAGAAGCTAGTTGAGA+TGG | + | chr1_1:54142353-54142372 | None:intergenic | 40.0% | |
| !! | TCAGATGGTGTCATCATCTT+CGG | - | chr1_1:54142410-54142429 | Msa0029010:intron | 40.0% |
| TTGTCAGCGAGAAAACTGTA+AGG | + | chr1_1:54142443-54142462 | None:intergenic | 40.0% | |
| ACAGCTTCAGCTTTCTTACA+GGG | - | chr1_1:54142536-54142555 | Msa0029010:CDS | 40.0% | |
| CCTTCAGTCGAGTATTTCAT+CGG | - | chr1_1:54142563-54142582 | Msa0029010:CDS | 40.0% | |
| TAGTACGGTTGATCCTTACA+CGG | - | chr1_1:54138260-54138279 | Msa0029010:CDS | 40.0% | |
| !! | GAAGCTTCTAAAACCGTGTA+AGG | + | chr1_1:54142692-54142711 | None:intergenic | 40.0% |
| !! | AATGATGAGGTTTTGTGCCT+TGG | - | chr1_1:54142920-54142939 | Msa0029010:CDS | 40.0% |
| GCAAGGACTTCTATTGTGAT+TGG | - | chr1_1:54142965-54142984 | Msa0029010:intron | 40.0% | |
| AGGACTTCTATTGTGATTGG+AGG | - | chr1_1:54142968-54142987 | Msa0029010:intron | 40.0% | |
| GGACTTCTATTGTGATTGGA+GGG | - | chr1_1:54142969-54142988 | Msa0029010:intron | 40.0% | |
| !! | TGTGATTGGAGGGTATCAAT+TGG | - | chr1_1:54142979-54142998 | Msa0029010:intron | 40.0% |
| AAAGCCGAAGCTAGTTGAGA+TGG | + | chr1_1:54137955-54137974 | None:intergenic | 45.0% | |
| !! | GGAGTTGTTTTATTCGGGGA+TGG | - | chr1_1:54138018-54138037 | Msa0029010:CDS | 45.0% |
| TTATTCGGGGATGGACCTTA+CGG | - | chr1_1:54138027-54138046 | Msa0029010:CDS | 45.0% | |
| AAAGCAGAAGCTGTGCTAAC+AGG | + | chr1_1:54138114-54138133 | None:intergenic | 45.0% | |
| ACAGCTTCTGCTTTCTCACA+AGG | - | chr1_1:54138120-54138139 | Msa0029010:CDS | 45.0% | |
| CCTTCAGCCGAGTATTTCAT+CGG | - | chr1_1:54138147-54138166 | Msa0029010:CDS | 45.0% | |
| ! | ATAGACAACAACGGTGTTGG+TGG | - | chr1_1:54138228-54138247 | Msa0029010:CDS | 45.0% |
| TAATGTGACTGGGACACGAT+TGG | - | chr1_1:54138392-54138411 | Msa0029010:CDS | 45.0% | |
| AATGTGACTGGGACACGATT+GGG | - | chr1_1:54138393-54138412 | Msa0029010:CDS | 45.0% | |
| !! | AATTGGAGGGTATCAGTTGG+AGG | - | chr1_1:54138563-54138582 | Msa0029010:CDS | 45.0% |
| ! | GGATTTAGCTCCTTGCTCTT+TGG | - | chr1_1:54138624-54138643 | Msa0029010:CDS | 45.0% |
| AGTTTGTCGTCCAAAGAGCA+AGG | + | chr1_1:54138637-54138656 | None:intergenic | 45.0% | |
| !! | AAAAAGCATCTAGGCAGTGG+AGG | + | chr1_1:54138682-54138701 | None:intergenic | 45.0% |
| GGGTGAGTTGTCCATTTGAT+TGG | - | chr1_1:54139187-54139206 | Msa0029010:CDS | 45.0% | |
| GTCTCTTCAGTTTCACACAG+CGG | - | chr1_1:54139673-54139692 | Msa0029010:intron | 45.0% | |
| TGACACCTCATAATGGCGAT+TGG | + | chr1_1:54139961-54139980 | None:intergenic | 45.0% | |
| TGAGAGTGGCACTAAGGAAT+TGG | + | chr1_1:54141655-54141674 | None:intergenic | 45.0% | |
| CGTTAATGAGAGTGGCACTA+AGG | + | chr1_1:54141661-54141680 | None:intergenic | 45.0% | |
| !! | AGATGTTGAGTTGGAGAGGA+TGG | + | chr1_1:54141742-54141761 | None:intergenic | 45.0% |
| ACAGGGAGAACAAGTGCTTT+GGG | + | chr1_1:54141876-54141895 | None:intergenic | 45.0% | |
| ! | GTTGCGCTATCTTTTGTGAC+AGG | + | chr1_1:54141894-54141913 | None:intergenic | 45.0% |
| ! | AAGGTTTAGTGGGACTAGTG+GGG | + | chr1_1:54141952-54141971 | None:intergenic | 45.0% |
| ! | CAAGGTTTAGTGGGACTAGT+GGG | + | chr1_1:54141953-54141972 | None:intergenic | 45.0% |
| ACAAGGTTTAGTGGGACTAG+TGG | + | chr1_1:54141954-54141973 | None:intergenic | 45.0% | |
| GATCGACGACAAGGTTTAGT+GGG | + | chr1_1:54141962-54141981 | None:intergenic | 45.0% | |
| AGATCGACGACAAGGTTTAG+TGG | + | chr1_1:54141963-54141982 | None:intergenic | 45.0% | |
| CTAAACCTTGTCGTCGATCT+TGG | - | chr1_1:54141963-54141982 | Msa0029010:intron | 45.0% | |
| ATCTTGGCGGCAAATTTCTC+TGG | - | chr1_1:54141979-54141998 | Msa0029010:intron | 45.0% | |
| TCTTGGCGGCAAATTTCTCT+GGG | - | chr1_1:54141980-54141999 | Msa0029010:intron | 45.0% | |
| ! | GGTATGTAGAGGAAGTGTAG+TGG | + | chr1_1:54142019-54142038 | None:intergenic | 45.0% |
| AGATTTGGCGAGGGAACATT+GGG | + | chr1_1:54142063-54142082 | None:intergenic | 45.0% | |
| ATCACCGCAGCTATCAGATT+TGG | + | chr1_1:54142078-54142097 | None:intergenic | 45.0% | |
| TCAACTAACGGTTTCAACCC+AGG | - | chr1_1:54142212-54142231 | Msa0029010:intron | 45.0% | |
| !! | GCACCGACTTCATTATTACG+AGG | - | chr1_1:54142272-54142291 | Msa0029010:intron | 45.0% |
| TTATTACGAGGACTTGCAGG+TGG | - | chr1_1:54142284-54142303 | Msa0029010:intron | 45.0% | |
| !! | GATTTTGGGTCTTCCAAGAC+CGG | + | chr1_1:54142324-54142343 | None:intergenic | 45.0% |
| AAAGCTGAAGCTGTGCTAAC+AGG | + | chr1_1:54142530-54142549 | None:intergenic | 45.0% | |
| CACAGCTTCAGCTTTCTTAC+AGG | - | chr1_1:54142535-54142554 | Msa0029010:CDS | 45.0% | |
| CCGATGAAATACTCGACTGA+AGG | + | chr1_1:54142566-54142585 | None:intergenic | 45.0% | |
| TGCAAGAAACATAACGACGG+AGG | - | chr1_1:54142754-54142773 | Msa0029010:intron | 45.0% | |
| !! | TGCCTTGGATTTGTTAACGG+TGG | - | chr1_1:54142935-54142954 | Msa0029010:intron | 45.0% |
| CACCACCGTTAACAAATCCA+AGG | + | chr1_1:54142940-54142959 | None:intergenic | 45.0% | |
| TTAACGGTGGTGAGAATGCA+AGG | - | chr1_1:54142948-54142967 | Msa0029010:intron | 45.0% | |
| ! | TGATTTGGCTGCGTCTAGAT+TGG | - | chr1_1:54143021-54143040 | Msa0029010:CDS | 45.0% |
| GATTTGGCTGCGTCTAGATT+GGG | - | chr1_1:54143022-54143041 | Msa0029010:CDS | 45.0% | |
| !! | TAAAATAAATAAAAAGAATT+AGG | + | chr1_1:54139500-54139519 | None:intergenic | 5.0% |
| !! | AAAAATAAATAAAAAGAATT+AGG | + | chr1_1:54139532-54139551 | None:intergenic | 5.0% |
| CCGATGAAATACTCGGCTGA+AGG | + | chr1_1:54138150-54138169 | None:intergenic | 50.0% | |
| CTAACGGGATGCACAAATGC+TGG | + | chr1_1:54140320-54140339 | None:intergenic | 50.0% | |
| AGTTGGAGAGGATGGATCAG+AGG | + | chr1_1:54141734-54141753 | None:intergenic | 50.0% | |
| GACAGGGAGAACAAGTGCTT+TGG | + | chr1_1:54141877-54141896 | None:intergenic | 50.0% | |
| AACCTTGTCGTCGATCTTGG+CGG | - | chr1_1:54141966-54141985 | Msa0029010:intron | 50.0% | |
| CAGATTTGGCGAGGGAACAT+TGG | + | chr1_1:54142064-54142083 | None:intergenic | 50.0% | |
| GCAGCTATCAGATTTGGCGA+GGG | + | chr1_1:54142072-54142091 | None:intergenic | 50.0% | |
| CTCGCCAAATCTGATAGCTG+CGG | - | chr1_1:54142071-54142090 | Msa0029010:intron | 50.0% | |
| CAACACTTGTGGCCTCATTC+CGG | - | chr1_1:54142127-54142146 | Msa0029010:intron | 50.0% | |
| !! | TGATGGTGTTGTCCGGAATG+AGG | + | chr1_1:54142142-54142161 | None:intergenic | 50.0% |
| !! | CTGTGTGTGATGGTGTTGTC+CGG | + | chr1_1:54142149-54142168 | None:intergenic | 50.0% |
| GACAACACCATCACACACAG+CGG | - | chr1_1:54142149-54142168 | Msa0029010:intron | 50.0% | |
| !! | TGCAGGTGGTGTTTCTGGTA+TGG | - | chr1_1:54142298-54142317 | Msa0029010:intron | 50.0% |
| ! | GGTGTCATCATCTTCGGTGA+TGG | - | chr1_1:54142416-54142435 | Msa0029010:intron | 50.0% |
| AATTTGCCAGGGACGCCATT+GGG | - | chr1_1:54142815-54142834 | Msa0029010:CDS | 50.0% | |
| CATAATGGCGATTGGCGACG+TGG | + | chr1_1:54139953-54139972 | None:intergenic | 55.0% | |
| CGTCGCCAATCGCCATTATG+AGG | - | chr1_1:54139953-54139972 | Msa0029010:intron | 55.0% | |
| ! | GTGGGACTAGTGGGGTTCTT+TGG | + | chr1_1:54141944-54141963 | None:intergenic | 55.0% |
| CCTCTACATACCACCCTGCA+CGG | - | chr1_1:54142027-54142046 | Msa0029010:intron | 55.0% | |
| TTTGGCGAGGGAACATTGGG+CGG | + | chr1_1:54142060-54142079 | None:intergenic | 55.0% | |
| CGCAGCTATCAGATTTGGCG+AGG | + | chr1_1:54142073-54142092 | None:intergenic | 55.0% | |
| !! | GTGTTGTTGCAGCCGGGTTT+TGG | + | chr1_1:54142113-54142132 | None:intergenic | 55.0% |
| ! | CCACAAGTGTTGTTGCAGCC+GGG | + | chr1_1:54142119-54142138 | None:intergenic | 55.0% |
| ! | GCCACAAGTGTTGTTGCAGC+CGG | + | chr1_1:54142120-54142139 | None:intergenic | 55.0% |
| ! | ACGAGTACCGCTGTGTGTGA+TGG | + | chr1_1:54142159-54142178 | None:intergenic | 55.0% |
| ATCACACACAGCGGTACTCG+TGG | - | chr1_1:54142158-54142177 | Msa0029010:intron | 55.0% | |
| GGACTTGCAGGTGGTGTTTC+TGG | - | chr1_1:54142293-54142312 | Msa0029010:intron | 55.0% | |
| !! | GGTGGTGTTTCTGGTATGGC+CGG | - | chr1_1:54142302-54142321 | Msa0029010:intron | 55.0% |
| !! | GTTTCTGGTATGGCCGGTCT+TGG | - | chr1_1:54142308-54142327 | Msa0029010:intron | 55.0% |
| CAATTTGCCAGGGACGCCAT+TGG | - | chr1_1:54142814-54142833 | Msa0029010:CDS | 55.0% | |
| TGCCGCCAAGATCGACGACA+AGG | + | chr1_1:54141971-54141990 | None:intergenic | 60.0% | |
| CCGTGCAGGGTGGTATGTAG+AGG | + | chr1_1:54142030-54142049 | None:intergenic | 60.0% | |
| CCCGGCTGCAACAACACTTG+TGG | - | chr1_1:54142116-54142135 | Msa0029010:intron | 60.0% | |
| TGGCGATTGGCGACGTGGCA+AGG | + | chr1_1:54139948-54139967 | None:intergenic | 65.0% | |
| CGAGGGAACATTGGGCGGAG+GGG | + | chr1_1:54142055-54142074 | None:intergenic | 65.0% | |
| GCGAGGGAACATTGGGCGGA+GGG | + | chr1_1:54142056-54142075 | None:intergenic | 65.0% | |
| GTAGGCACAGCCGCACCCAA+TGG | + | chr1_1:54142833-54142852 | None:intergenic | 65.0% | |
| GGCGAGGGAACATTGGGCGG+AGG | + | chr1_1:54142057-54142076 | None:intergenic | 70.0% | |
| GCCAGGGACGCCATTGGGTG+CGG | - | chr1_1:54142820-54142839 | Msa0029010:CDS | 70.0% | |
| GCCGCACCCAATGGCGTCCC+TGG | + | chr1_1:54142824-54142843 | None:intergenic | 75.0% | |
| !!! | CGGAGGGGCACCGTGCAGGG+TGG | + | chr1_1:54142040-54142059 | None:intergenic | 80.0% |
| !!! | GGGCGGAGGGGCACCGTGCA+GGG | + | chr1_1:54142043-54142062 | None:intergenic | 80.0% |
| !!! | TGGGCGGAGGGGCACCGTGC+AGG | + | chr1_1:54142044-54142063 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 54137919 | 54143111 | 54137919 | ID=Msa0029010;Name=Msa0029010 |
| chr1_1 | mRNA | 54137919 | 54143111 | 54137919 | ID=Msa0029010-mRNA-1;Parent=Msa0029010;Name=Msa0029010-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|0|0|4|0|621 |
| chr1_1 | exon | 54142982 | 54143111 | 54142982 | ID=Msa0029010-mRNA-1:exon:16050;Parent=Msa0029010-mRNA-1 |
| chr1_1 | exon | 54142769 | 54142951 | 54142769 | ID=Msa0029010-mRNA-1:exon:16049;Parent=Msa0029010-mRNA-1 |
| chr1_1 | exon | 54142493 | 54142720 | 54142493 | ID=Msa0029010-mRNA-1:exon:16048;Parent=Msa0029010-mRNA-1 |
| chr1_1 | exon | 54137919 | 54139243 | 54137919 | ID=Msa0029010-mRNA-1:exon:16047;Parent=Msa0029010-mRNA-1 |
| chr1_1 | CDS | 54142982 | 54143111 | 54142982 | ID=Msa0029010-mRNA-1:cds;Parent=Msa0029010-mRNA-1 |
| chr1_1 | CDS | 54142769 | 54142951 | 54142769 | ID=Msa0029010-mRNA-1:cds;Parent=Msa0029010-mRNA-1 |
| chr1_1 | CDS | 54142493 | 54142720 | 54142493 | ID=Msa0029010-mRNA-1:cds;Parent=Msa0029010-mRNA-1 |
| chr1_1 | CDS | 54137919 | 54139243 | 54137919 | ID=Msa0029010-mRNA-1:cds;Parent=Msa0029010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
