Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271300 | XP_003593121.1 | 98.538 | 342 | 5 | 0 | 1 | 342 | 1 | 342 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271300 | sp|Q42649|F16P2_BETVU | 82.353 | 340 | 60 | 0 | 1 | 340 | 1 | 340 | 0.0 | 596 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271300 | G7IL84 | 98.538 | 342 | 5 | 0 | 1 | 342 | 1 | 342 | 0.0 | 696 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0271300 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029010 | Msa0271300 | 0.818056 | 2.392203e-52 | -8.615850e-47 |
| Msa0059880 | Msa0271300 | 0.805174 | 1.516119e-49 | -8.615850e-47 |
| Msa0064990 | Msa0271300 | 0.801791 | 7.621357e-49 | -8.615850e-47 |
| Msa0076640 | Msa0271300 | 0.837817 | 4.156253e-57 | -8.615850e-47 |
| Msa0076650 | Msa0271300 | 0.803089 | 4.117307e-49 | -8.615850e-47 |
| Msa0087900 | Msa0271300 | 0.803213 | 3.881041e-49 | -8.615850e-47 |
| Msa0146210 | Msa0271300 | 0.835429 | 1.686901e-56 | -8.615850e-47 |
| Msa0150910 | Msa0271300 | 0.814054 | 1.872915e-51 | -8.615850e-47 |
| Msa0169050 | Msa0271300 | 0.800748 | 1.245830e-48 | -8.615850e-47 |
| Msa0224210 | Msa0271300 | 0.814906 | 1.213780e-51 | -8.615850e-47 |
| Msa0231850 | Msa0271300 | 0.920180 | 1.772571e-87 | -8.615850e-47 |
| Msa0238140 | Msa0271300 | 0.800031 | 1.744218e-48 | -8.615850e-47 |
| Msa0246140 | Msa0271300 | 0.819352 | 1.215163e-52 | -8.615850e-47 |
| Msa0269710 | Msa0271300 | 0.806951 | 6.409342e-50 | -8.615850e-47 |
| Msa0271300 | Msa0275560 | 0.807222 | 5.617940e-50 | -8.615850e-47 |
| Msa0271300 | Msa0275570 | 0.807745 | 4.349988e-50 | -8.615850e-47 |
| Msa0271300 | Msa0303900 | 0.801389 | 9.216355e-49 | -8.615850e-47 |
| Msa0271300 | Msa0309920 | 0.869470 | 3.022135e-66 | -8.615850e-47 |
| Msa0271300 | Msa0368620 | 0.808378 | 3.190183e-50 | -8.615850e-47 |
| Msa0271300 | Msa0389710 | 0.818555 | 1.844209e-52 | -8.615850e-47 |
| Msa0271300 | Msa0390790 | 0.817801 | 2.730860e-52 | -8.615850e-47 |
| Msa0271300 | Msa0423690 | 0.803383 | 3.577986e-49 | -8.615850e-47 |
| Msa0271300 | Msa0480260 | 0.803885 | 2.815754e-49 | -8.615850e-47 |
| Msa0271300 | Msa0508160 | 0.823108 | 1.654283e-53 | -8.615850e-47 |
| Msa0271300 | Msa0537210 | 0.800362 | 1.493471e-48 | -8.615850e-47 |
| Msa0271300 | Msa0560280 | 0.805157 | 1.528778e-49 | -8.615850e-47 |
| Msa0271300 | Msa0563230 | -0.810052 | 1.396318e-50 | -8.615850e-47 |
| Msa0271300 | Msa0612580 | 0.831814 | 1.348369e-55 | -8.615850e-47 |
| Msa0271300 | Msa0638820 | 0.801467 | 8.881327e-49 | -8.615850e-47 |
| Msa0271300 | Msa0651820 | 0.806872 | 6.662548e-50 | -8.615850e-47 |
| Msa0271300 | Msa0652610 | 0.805751 | 1.147741e-49 | -8.615850e-47 |
| Msa0271300 | Msa0672090 | 0.816098 | 6.589339e-52 | -8.615850e-47 |
| Msa0271300 | Msa0672950 | 0.801033 | 1.089810e-48 | -8.615850e-47 |
| Msa0271300 | Msa0695630 | 0.833097 | 6.484474e-56 | -8.615850e-47 |
| Msa0271300 | Msa0697510 | 0.801609 | 8.307171e-49 | -8.615850e-47 |
| Msa0271300 | Msa0697520 | 0.807391 | 5.172248e-50 | -8.615850e-47 |
| Msa0271300 | Msa0741170 | 0.811394 | 7.155532e-51 | -8.615850e-47 |
| Msa0271300 | Msa0826360 | 0.804568 | 2.029443e-49 | -8.615850e-47 |
| Msa0271300 | Msa0861820 | 0.804175 | 2.451071e-49 | -8.615850e-47 |
| Msa0271300 | Msa0876600 | 0.801888 | 7.280098e-49 | -8.615850e-47 |
| Msa0271300 | Msa0914710 | 0.814579 | 1.433851e-51 | -8.615850e-47 |
| Msa0271300 | Msa0945320 | 0.801453 | 8.939398e-49 | -8.615850e-47 |
| Msa0271300 | Msa0947520 | 0.821677 | 3.556019e-53 | -8.615850e-47 |
| Msa0271300 | Msa0986160 | 0.803768 | 2.977796e-49 | -8.615850e-47 |
| Msa0271300 | Msa1018210 | -0.800915 | 1.151870e-48 | -8.615850e-47 |
| Msa0271300 | Msa1120560 | 0.801395 | 9.189087e-49 | -8.615850e-47 |
| Msa0271300 | Msa1123000 | 0.804286 | 2.323181e-49 | -8.615850e-47 |
| Msa0271300 | Msa1164230 | 0.801819 | 7.520866e-49 | -8.615850e-47 |
| Msa0271300 | Msa1344930 | 0.832582 | 8.706235e-56 | -8.615850e-47 |
| Msa0271300 | Msa1373990 | 0.836154 | 1.105195e-56 | -8.615850e-47 |
| Msa0271300 | Msa1402300 | 0.803306 | 3.712369e-49 | -8.615850e-47 |
| Msa0271300 | Msa1414340 | 0.928488 | 2.690584e-92 | -8.615850e-47 |
| Msa0271300 | Msa1459930 | 0.800791 | 1.221086e-48 | -8.615850e-47 |
| Msa0271300 | Msa1466530 | 0.819796 | 9.620600e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271300 | MtrunA17_Chr2g0278581 | 98.538 | 342 | 5 | 0 | 1 | 342 | 1 | 342 | 0.0 | 696 |
| Msa0271300 | MtrunA17_Chr6g0463901 | 84.776 | 335 | 51 | 0 | 1 | 335 | 1 | 335 | 0.0 | 601 |
| Msa0271300 | MtrunA17_Chr7g0241071 | 50.585 | 342 | 151 | 2 | 11 | 335 | 71 | 411 | 1.19e-116 | 343 |
| Msa0271300 | MtrunA17_Chr4g0049821 | 42.258 | 310 | 156 | 6 | 32 | 331 | 87 | 383 | 6.13e-76 | 239 |
| Msa0271300 | MtrunA17_Chr3g0113101 | 30.961 | 281 | 173 | 8 | 67 | 342 | 116 | 380 | 4.07e-23 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0271300 | AT1G43670.1 | 80.826 | 339 | 65 | 0 | 1 | 339 | 1 | 339 | 0.0 | 584 |
| Msa0271300 | AT3G54050.2 | 50.588 | 340 | 152 | 3 | 11 | 335 | 79 | 417 | 1.87e-116 | 343 |
| Msa0271300 | AT3G54050.1 | 50.588 | 340 | 152 | 3 | 11 | 335 | 79 | 417 | 1.87e-116 | 343 |
| Msa0271300 | AT5G64380.1 | 40.881 | 318 | 168 | 8 | 32 | 339 | 89 | 396 | 7.16e-74 | 234 |
| Msa0271300 | AT3G55800.1 | 31.449 | 283 | 161 | 10 | 67 | 338 | 123 | 383 | 4.59e-23 | 99.4 |
Find 69 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATCAATCACATTGTTCT+TGG | 0.178736 | 2_3:+2603116 | Msa0271300:CDS |
| GAATAAATCTTTCCTTTCTT+TGG | 0.198088 | 2_3:-2605203 | None:intergenic |
| CACTATTGCATATAGATCTT+TGG | 0.249832 | 2_3:+2604710 | Msa0271300:intron |
| ACTGACTTGCCACGCTGTGC+TGG | 0.263816 | 2_3:-2604446 | None:intergenic |
| CTTACCTTAGCTTTCCATTT+GGG | 0.275310 | 2_3:-2605603 | None:intergenic |
| CATAGTTGTGTTTGATCCTT+TGG | 0.288689 | 2_3:+2604557 | Msa0271300:CDS |
| CCAAAGTCTCTTAGGTATAT+TGG | 0.298619 | 2_3:+2605420 | Msa0271300:CDS |
| TATGCAGAATCCAAAGAAAA+TGG | 0.326692 | 2_3:+2606390 | Msa0271300:CDS |
| TGTGCGTCCGCTGCTGATTA+AGG | 0.328499 | 2_3:-2604244 | None:intergenic |
| ATTGATTGTGGAGTTTCAAT+AGG | 0.341565 | 2_3:+2604594 | Msa0271300:CDS |
| CACCATATAGCAATGTTCTA+TGG | 0.354552 | 2_3:-2605549 | None:intergenic |
| TCTTACCTTAGCTTTCCATT+TGG | 0.373307 | 2_3:-2605604 | None:intergenic |
| GTTCACCACCAAAGTCTCTT+AGG | 0.374034 | 2_3:+2605412 | Msa0271300:CDS |
| CTGACTTGCCACGCTGTGCT+GGG | 0.376754 | 2_3:-2604445 | None:intergenic |
| TCGTAGCTTCCAAGGAATAT+TGG | 0.381749 | 2_3:-2606342 | None:intergenic |
| GTCCATAGAACATTGCTATA+TGG | 0.388889 | 2_3:+2605547 | Msa0271300:CDS |
| AATGCATGTACCTTGATGTT+TGG | 0.391145 | 2_3:-2605076 | None:intergenic |
| TTTGTGCTTAGCACAGGAAA+TGG | 0.404030 | 2_3:+2605001 | Msa0271300:CDS |
| ATGCATGTACCTTGATGTTT+GGG | 0.428381 | 2_3:-2605075 | None:intergenic |
| TTTACACTTGATCCTTCCCT+TGG | 0.433839 | 2_3:+2605034 | Msa0271300:CDS |
| AAAGATTTATTCTGTGAATG+AGG | 0.439092 | 2_3:+2605214 | Msa0271300:CDS |
| CCAATATACCTAAGAGACTT+TGG | 0.448075 | 2_3:-2605420 | None:intergenic |
| ATTGCAACCTGGTAGCAGTT+TGG | 0.453203 | 2_3:+2604778 | Msa0271300:CDS |
| GCAGCTGGTTACTGCATGTA+TGG | 0.456073 | 2_3:+2604803 | Msa0271300:CDS |
| CTGATTTGATGACAATAACT+AGG | 0.457076 | 2_3:+2603039 | Msa0271300:CDS |
| AGCACAGGAAATGGAGTGAA+TGG | 0.467256 | 2_3:+2605010 | Msa0271300:CDS |
| AACAAAACTCACTTGAACAT+TGG | 0.470224 | 2_3:-2603318 | None:intergenic |
| AACTCCACAATCAATGTTTG+AGG | 0.474075 | 2_3:-2604586 | None:intergenic |
| TGACTTGCCACGCTGTGCTG+GGG | 0.480596 | 2_3:-2604444 | None:intergenic |
| GATCGATCGCCAATATTCCT+TGG | 0.483711 | 2_3:+2606333 | Msa0271300:CDS |
| GCTGATAAGAAAAGCCCAAA+TGG | 0.486498 | 2_3:+2605589 | Msa0271300:CDS |
| TGGTGTCTCCAGCAAGTCCT+AGG | 0.492171 | 2_3:-2603298 | None:intergenic |
| TCCAAAACTTACTTGGCCGT+TGG | 0.497852 | 2_3:-2605260 | None:intergenic |
| AAGATTTATTCTGTGAATGA+GGG | 0.501287 | 2_3:+2605215 | Msa0271300:CDS |
| GGTAGCAGTTTGGTAGCAGC+TGG | 0.501393 | 2_3:+2604788 | Msa0271300:CDS |
| TTGCAGTTTGTGCTTAGCAC+AGG | 0.508953 | 2_3:+2604995 | Msa0271300:intron |
| GTGCCTTCTTGTTTCAGAAG+AGG | 0.512489 | 2_3:+2604400 | Msa0271300:intron |
| CAGTTCTGTTAGCATCTGCT+TGG | 0.515272 | 2_3:-2603019 | None:intergenic |
| TTCTAATGAAGTATTTGTGA+AGG | 0.533564 | 2_3:+2604221 | Msa0271300:CDS |
| GTTGTGTTTGATCCTTTGGA+TGG | 0.544716 | 2_3:+2604561 | Msa0271300:CDS |
| CAATTTCATCGTAGCTTCCA+AGG | 0.546062 | 2_3:-2606350 | None:intergenic |
| GACTTGCCACGCTGTGCTGG+GGG | 0.552070 | 2_3:-2604443 | None:intergenic |
| TGCTCCATCAAATATGACAT+TGG | 0.555129 | 2_3:-2605984 | None:intergenic |
| GGTTCCTCAAACATTGATTG+TGG | 0.568496 | 2_3:+2604582 | Msa0271300:CDS |
| AACAATGTGATTGATGAGAA+TGG | 0.568531 | 2_3:-2603111 | None:intergenic |
| TCATATTTGATGGAGCAAGC+AGG | 0.570588 | 2_3:+2605990 | Msa0271300:CDS |
| GAGTCAATATGAACTCTCCA+AGG | 0.570901 | 2_3:-2605051 | None:intergenic |
| TGTTTGTTCTTCTGTTAACA+AGG | 0.573073 | 2_3:+2603148 | Msa0271300:CDS |
| ACTTCATAGATACCAAAGAA+AGG | 0.574423 | 2_3:+2605191 | Msa0271300:intron |
| AGCTTTCACAGGAAAACAAA+GGG | 0.576524 | 2_3:+2606019 | Msa0271300:CDS |
| GCAGGAGGTCAAGCTTTCAC+AGG | 0.578987 | 2_3:+2606008 | Msa0271300:CDS |
| GCTGCTACCAAACTGCTACC+AGG | 0.581274 | 2_3:-2604785 | None:intergenic |
| AGTCTCTTAGGTATATTGGC+AGG | 0.582669 | 2_3:+2605424 | Msa0271300:CDS |
| CAACCTCTTCTGAAACAAGA+AGG | 0.591219 | 2_3:-2604403 | None:intergenic |
| CATGTATGGAAGCTCTTGCA+CGG | 0.591600 | 2_3:+2604817 | Msa0271300:CDS |
| AAAGCCCAAATGGAAAGCTA+AGG | 0.593648 | 2_3:+2605599 | Msa0271300:CDS |
| TTTGGTGGTGAACTGTCTTG+TGG | 0.594367 | 2_3:-2605402 | None:intergenic |
| GTTGAAGATGCATTGCAACC+TGG | 0.599461 | 2_3:+2604767 | Msa0271300:CDS |
| ATTGACTCACCCAAACATCA+AGG | 0.604776 | 2_3:+2605066 | Msa0271300:CDS |
| CATAGAACATTGCTATATGG+TGG | 0.610102 | 2_3:+2605550 | Msa0271300:CDS |
| AATATGAACTCTCCAAGGGA+AGG | 0.611205 | 2_3:-2605046 | None:intergenic |
| AAGCTTTCACAGGAAAACAA+AGG | 0.624169 | 2_3:+2606018 | Msa0271300:CDS |
| GTGAAGGCCTTAATCAGCAG+CGG | 0.626415 | 2_3:+2604237 | Msa0271300:CDS |
| TAGCAATGTTCTATGGACAT+CGG | 0.638052 | 2_3:-2605542 | None:intergenic |
| ATATACCTAAGAGACTTTGG+TGG | 0.639800 | 2_3:-2605417 | None:intergenic |
| AGTCAATATGAACTCTCCAA+GGG | 0.668311 | 2_3:-2605050 | None:intergenic |
| ATGTTTGAGGAACCATCCAA+AGG | 0.670132 | 2_3:-2604573 | None:intergenic |
| TCAAAGTATGCTGAATCACG+TGG | 0.673339 | 2_3:+2603080 | Msa0271300:CDS |
| TATTTGATGGAGCAAGCAGG+AGG | 0.695622 | 2_3:+2605993 | Msa0271300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATAAACATTCAATTAA+TGG | - | chr2_3:2603247-2603266 | None:intergenic | 10.0% |
| !! | TTTATTTAATATGAGTTTAA+TGG | + | chr2_3:2603477-2603496 | Msa0271300:intron | 10.0% |
| !!! | TTGATAAATATAGAATATTT+TGG | - | chr2_3:2604473-2604492 | None:intergenic | 10.0% |
| !! | TAAATTAACATAAAGTTATT+AGG | + | chr2_3:2605121-2605140 | Msa0271300:intron | 10.0% |
| !!! | TTATAATTTTTTTTACTGAC+AGG | + | chr2_3:2603259-2603278 | Msa0271300:intron | 15.0% |
| !! | AATATTATTTCAGATTTAGA+TGG | - | chr2_3:2603439-2603458 | None:intergenic | 15.0% |
| !! | ATAATATTACATGGATATAA+AGG | - | chr2_3:2603665-2603684 | None:intergenic | 15.0% |
| !! | GTTGAAAATATAATATTACA+TGG | - | chr2_3:2603674-2603693 | None:intergenic | 15.0% |
| !!! | TAATTCATATGCATTTTATT+TGG | + | chr2_3:2604330-2604349 | Msa0271300:intron | 15.0% |
| !! | ATGTTTAAACTAATAACTTA+TGG | + | chr2_3:2605915-2605934 | Msa0271300:intron | 15.0% |
| !! | TAGAAATTAGTACTAAGATA+TGG | - | chr2_3:2603558-2603577 | None:intergenic | 20.0% |
| !!! | AAATCGAATTTAAAGCTAAT+TGG | - | chr2_3:2603787-2603806 | None:intergenic | 20.0% |
| !!! | AGGAATTCAAGTATTTTAAA+GGG | - | chr2_3:2603865-2603884 | None:intergenic | 20.0% |
| !!! | AAGGAATTCAAGTATTTTAA+AGG | - | chr2_3:2603866-2603885 | None:intergenic | 20.0% |
| !! | CCAAATATTATAAGTTTCTA+CGG | - | chr2_3:2604072-2604091 | None:intergenic | 20.0% |
| !!! | GCTTTATTTTGTTTTTTTGT+TGG | + | chr2_3:2604289-2604308 | Msa0271300:intron | 20.0% |
| !!! | AAATTGCATTTTACTAAATC+AGG | - | chr2_3:2604368-2604387 | None:intergenic | 20.0% |
| !!! | TAAAATGCAATTTTTTGCTT+TGG | + | chr2_3:2604375-2604394 | Msa0271300:intron | 20.0% |
| !! | TAACATTCTATTAGCATAAT+CGG | - | chr2_3:2604854-2604873 | None:intergenic | 20.0% |
| !!! | AAGTTATTAGGTTTTTACTT+AGG | + | chr2_3:2605133-2605152 | Msa0271300:intron | 20.0% |
| !! | AATAAAATGAAGAAACTTGA+AGG | - | chr2_3:2605489-2605508 | None:intergenic | 20.0% |
| !! | AAATTTGACTGTAAATTATC+AGG | + | chr2_3:2605943-2605962 | Msa0271300:intron | 20.0% |
| !! | AATTTGACTGTAAATTATCA+GGG | + | chr2_3:2605944-2605963 | Msa0271300:intron | 20.0% |
| !! | ACGATTAAATAACTGATATA+AGG | - | chr2_3:2606221-2606240 | None:intergenic | 20.0% |
| ! | CACGTAACATTCTAAATTAA+AGG | - | chr2_3:2603358-2603377 | None:intergenic | 25.0% |
| ! | TCACACAAAAAAGATTTAGA+TGG | - | chr2_3:2603408-2603427 | None:intergenic | 25.0% |
| ! | GGATGTTGATGTAAAAATAA+TGG | - | chr2_3:2603515-2603534 | None:intergenic | 25.0% |
| !! | GATGTGTATTGAATTTTCAT+TGG | + | chr2_3:2603598-2603617 | Msa0271300:intron | 25.0% |
| !! | GTATTGAATTTTCATTGGAT+TGG | + | chr2_3:2603603-2603622 | Msa0271300:intron | 25.0% |
| ! | CCGTAGAAACTTATAATATT+TGG | + | chr2_3:2604069-2604088 | Msa0271300:intron | 25.0% |
| ! | TAGTGGTGAATAGAAAAATA+GGG | - | chr2_3:2604166-2604185 | None:intergenic | 25.0% |
| ! | ATAGTGGTGAATAGAAAAAT+AGG | - | chr2_3:2604167-2604186 | None:intergenic | 25.0% |
| ! | TTTCTATTCACCACTATTTA+AGG | + | chr2_3:2604170-2604189 | Msa0271300:intron | 25.0% |
| ! | TTCTATTCACCACTATTTAA+GGG | + | chr2_3:2604171-2604190 | Msa0271300:intron | 25.0% |
| !! | TTCTAATGAAGTATTTGTGA+AGG | + | chr2_3:2604221-2604240 | Msa0271300:CDS | 25.0% |
| ! | AAAATATAGCAATCAAGCTT+GGG | - | chr2_3:2604650-2604669 | None:intergenic | 25.0% |
| ! | TAAAATATAGCAATCAAGCT+TGG | - | chr2_3:2604651-2604670 | None:intergenic | 25.0% |
| ! | GAATAAATCTTTCCTTTCTT+TGG | - | chr2_3:2605206-2605225 | None:intergenic | 25.0% |
| ! | AAAGATTTATTCTGTGAATG+AGG | + | chr2_3:2605214-2605233 | Msa0271300:CDS | 25.0% |
| ! | AAGATTTATTCTGTGAATGA+GGG | + | chr2_3:2605215-2605234 | Msa0271300:CDS | 25.0% |
| ! | AACTTTATGTAGTTTGATCT+TGG | + | chr2_3:2605459-2605478 | Msa0271300:intron | 25.0% |
| !! | AATTCAGATTCCTTTTCTAT+CGG | - | chr2_3:2605714-2605733 | None:intergenic | 25.0% |
| !!! | ACCTAAGGACATTTTAAAAT+CGG | + | chr2_3:2605742-2605761 | Msa0271300:intron | 25.0% |
| ! | ACTACATATCCCAATAATTT+AGG | - | chr2_3:2605815-2605834 | None:intergenic | 25.0% |
| ! | ACATATCATATAACACAACT+CGG | - | chr2_3:2605899-2605918 | None:intergenic | 25.0% |
| !! | TTTTCCAATGTCATATTTGA+TGG | + | chr2_3:2605980-2605999 | Msa0271300:CDS | 25.0% |
| ! | CAGTTATTTAATCGTTGAAT+TGG | + | chr2_3:2606226-2606245 | Msa0271300:intron | 25.0% |
| !!! | TCATACGATAATTTTTTTGC+AGG | + | chr2_3:2606281-2606300 | Msa0271300:intron | 25.0% |
| ! | CTGATTTGATGACAATAACT+AGG | + | chr2_3:2603039-2603058 | Msa0271300:CDS | 30.0% |
| AACAATGTGATTGATGAGAA+TGG | - | chr2_3:2603114-2603133 | None:intergenic | 30.0% | |
| TGTTTGTTCTTCTGTTAACA+AGG | + | chr2_3:2603148-2603167 | Msa0271300:CDS | 30.0% | |
| !!! | AATTTTTTTTACTGACAGGC+TGG | + | chr2_3:2603263-2603282 | Msa0271300:intron | 30.0% |
| AACAAAACTCACTTGAACAT+TGG | - | chr2_3:2603321-2603340 | None:intergenic | 30.0% | |
| !! | ACACATCACTCAGTTTTATA+AGG | - | chr2_3:2603585-2603604 | None:intergenic | 30.0% |
| AAATACTTCCAAAACATGTG+CGG | + | chr2_3:2603756-2603775 | Msa0271300:intron | 30.0% | |
| ! | TACATCAAGTTTGCTTAAAC+CGG | - | chr2_3:2603817-2603836 | None:intergenic | 30.0% |
| AACTTGATGTAACAGAGATA+AGG | + | chr2_3:2603826-2603845 | Msa0271300:intron | 30.0% | |
| ! | TTTTCTTTTCTCTAATGCAC+AGG | - | chr2_3:2603962-2603981 | None:intergenic | 30.0% |
| ACATTTCACAAAGTTTCAAG+AGG | + | chr2_3:2604116-2604135 | Msa0271300:intron | 30.0% | |
| TCTATTCACCACTATTTAAG+GGG | + | chr2_3:2604172-2604191 | Msa0271300:intron | 30.0% | |
| ACAAAATAAAGCAAACTCGA+GGG | - | chr2_3:2604281-2604300 | None:intergenic | 30.0% | |
| AACAAAATAAAGCAAACTCG+AGG | - | chr2_3:2604282-2604301 | None:intergenic | 30.0% | |
| ATTGATTGTGGAGTTTCAAT+AGG | + | chr2_3:2604594-2604613 | Msa0271300:CDS | 30.0% | |
| CACTATTGCATATAGATCTT+TGG | + | chr2_3:2604710-2604729 | Msa0271300:intron | 30.0% | |
| CAATTTATTCGATCAGAATC+AGG | - | chr2_3:2604968-2604987 | None:intergenic | 30.0% | |
| TTCTGATCGAATAAATTGCA+CGG | + | chr2_3:2604970-2604989 | Msa0271300:intron | 30.0% | |
| ACTTCATAGATACCAAAGAA+AGG | + | chr2_3:2605191-2605210 | Msa0271300:intron | 30.0% | |
| CAGAATTTCCAAAACTTACT+TGG | - | chr2_3:2605270-2605289 | None:intergenic | 30.0% | |
| TTCATGTTAACTCAAGAATC+AGG | - | chr2_3:2605313-2605332 | None:intergenic | 30.0% | |
| GAAAAATGCACAATACAGTA+TGG | + | chr2_3:2605516-2605535 | Msa0271300:intron | 30.0% | |
| AAATGATTCTCCGATAGAAA+AGG | + | chr2_3:2605701-2605720 | Msa0271300:intron | 30.0% | |
| TTAAAATGTCCTTAGGTCTT+GGG | - | chr2_3:2605739-2605758 | None:intergenic | 30.0% | |
| ! | TTTAAAATGTCCTTAGGTCT+TGG | - | chr2_3:2605740-2605759 | None:intergenic | 30.0% |
| !!! | TCCGATTTTAAAATGTCCTT+AGG | - | chr2_3:2605746-2605765 | None:intergenic | 30.0% |
| !! | TATGTATGGAGTATTGCAAA+CGG | - | chr2_3:2605839-2605858 | None:intergenic | 30.0% |
| TCATTTGATACTACATCTGA+TGG | + | chr2_3:2606249-2606268 | Msa0271300:intron | 30.0% | |
| ! | GATCGATCATGTATTTTCTT+AGG | - | chr2_3:2606321-2606340 | None:intergenic | 30.0% |
| TATGCAGAATCCAAAGAAAA+TGG | + | chr2_3:2606390-2606409 | Msa0271300:CDS | 30.0% | |
| CTCATCAATCACATTGTTCT+TGG | + | chr2_3:2603116-2603135 | Msa0271300:CDS | 35.0% | |
| ACTAAGATATGGAACTAGTG+TGG | - | chr2_3:2603547-2603566 | None:intergenic | 35.0% | |
| TGAGTGTGTAATTCACTTCA+AGG | - | chr2_3:2603885-2603904 | None:intergenic | 35.0% | |
| CTATTCACCACTATTTAAGG+GGG | + | chr2_3:2604173-2604192 | Msa0271300:intron | 35.0% | |
| CATAGTTGTGTTTGATCCTT+TGG | + | chr2_3:2604557-2604576 | Msa0271300:CDS | 35.0% | |
| AACTCCACAATCAATGTTTG+AGG | - | chr2_3:2604589-2604608 | None:intergenic | 35.0% | |
| AGTCAATATGAACTCTCCAA+GGG | - | chr2_3:2605053-2605072 | None:intergenic | 35.0% | |
| ATGCATGTACCTTGATGTTT+GGG | - | chr2_3:2605078-2605097 | None:intergenic | 35.0% | |
| AATGCATGTACCTTGATGTT+TGG | - | chr2_3:2605079-2605098 | None:intergenic | 35.0% | |
| GCATTATGTTGCAGCTAAAT+TGG | + | chr2_3:2605094-2605113 | Msa0271300:intron | 35.0% | |
| ATATACCTAAGAGACTTTGG+TGG | - | chr2_3:2605420-2605439 | None:intergenic | 35.0% | |
| CCAATATACCTAAGAGACTT+TGG | - | chr2_3:2605423-2605442 | None:intergenic | 35.0% | |
| CCAAAGTCTCTTAGGTATAT+TGG | + | chr2_3:2605420-2605439 | Msa0271300:CDS | 35.0% | |
| TAGCAATGTTCTATGGACAT+CGG | - | chr2_3:2605545-2605564 | None:intergenic | 35.0% | |
| GTCCATAGAACATTGCTATA+TGG | + | chr2_3:2605547-2605566 | Msa0271300:CDS | 35.0% | |
| CACCATATAGCAATGTTCTA+TGG | - | chr2_3:2605552-2605571 | None:intergenic | 35.0% | |
| CATAGAACATTGCTATATGG+TGG | + | chr2_3:2605550-2605569 | Msa0271300:CDS | 35.0% | |
| ! | CTTACCTTAGCTTTCCATTT+GGG | - | chr2_3:2605606-2605625 | None:intergenic | 35.0% |
| ! | TCTTACCTTAGCTTTCCATT+TGG | - | chr2_3:2605607-2605626 | None:intergenic | 35.0% |
| GGTAAGACTGTGATATACTT+TGG | + | chr2_3:2605620-2605639 | Msa0271300:intron | 35.0% | |
| ACATTTGATCTAGCATCCTT+AGG | + | chr2_3:2605661-2605680 | Msa0271300:intron | 35.0% | |
| GTTCGAGGACCTAAATTATT+GGG | + | chr2_3:2605803-2605822 | Msa0271300:intron | 35.0% | |
| !! | ATGTATGGAGTATTGCAAAC+GGG | - | chr2_3:2605838-2605857 | None:intergenic | 35.0% |
| TCCATACATAGATGAGAACT+TGG | + | chr2_3:2605849-2605868 | Msa0271300:intron | 35.0% | |
| TGCTCCATCAAATATGACAT+TGG | - | chr2_3:2605987-2606006 | None:intergenic | 35.0% | |
| AAGCTTTCACAGGAAAACAA+AGG | + | chr2_3:2606018-2606037 | Msa0271300:CDS | 35.0% | |
| AGCTTTCACAGGAAAACAAA+GGG | + | chr2_3:2606019-2606038 | Msa0271300:CDS | 35.0% | |
| TCAAAGTATGCTGAATCACG+TGG | + | chr2_3:2603080-2603099 | Msa0271300:CDS | 40.0% | |
| ! | TTTTTACTGACAGGCTGGAT+TGG | + | chr2_3:2603268-2603287 | Msa0271300:intron | 40.0% |
| ! | TAAATTCGATTTGCCTCCAC+CGG | + | chr2_3:2603795-2603814 | Msa0271300:intron | 40.0% |
| ! | ATCAAGTTTGCTTAAACCGG+TGG | - | chr2_3:2603814-2603833 | None:intergenic | 40.0% |
| CGGAAATAGAGACACTTGAA+GGG | - | chr2_3:2604052-2604071 | None:intergenic | 40.0% | |
| ACGGAAATAGAGACACTTGA+AGG | - | chr2_3:2604053-2604072 | None:intergenic | 40.0% | |
| !! | CAACCTCTTCTGAAACAAGA+AGG | - | chr2_3:2604406-2604425 | None:intergenic | 40.0% |
| GTTGTGTTTGATCCTTTGGA+TGG | + | chr2_3:2604561-2604580 | Msa0271300:CDS | 40.0% | |
| ATGTTTGAGGAACCATCCAA+AGG | - | chr2_3:2604576-2604595 | None:intergenic | 40.0% | |
| ! | GGTTCCTCAAACATTGATTG+TGG | + | chr2_3:2604582-2604601 | Msa0271300:CDS | 40.0% |
| TTTGTGCTTAGCACAGGAAA+TGG | + | chr2_3:2605001-2605020 | Msa0271300:CDS | 40.0% | |
| TTTACACTTGATCCTTCCCT+TGG | + | chr2_3:2605034-2605053 | Msa0271300:CDS | 40.0% | |
| AATATGAACTCTCCAAGGGA+AGG | - | chr2_3:2605049-2605068 | None:intergenic | 40.0% | |
| GAGTCAATATGAACTCTCCA+AGG | - | chr2_3:2605054-2605073 | None:intergenic | 40.0% | |
| ! | ATTGACTCACCCAAACATCA+AGG | + | chr2_3:2605066-2605085 | Msa0271300:CDS | 40.0% |
| CAAAAACTGGGATGAACCAA+CGG | + | chr2_3:2605244-2605263 | Msa0271300:CDS | 40.0% | |
| AGTCTCTTAGGTATATTGGC+AGG | + | chr2_3:2605424-2605443 | Msa0271300:CDS | 40.0% | |
| ! | TTGGGCTTTTCTTATCAGCA+GGG | - | chr2_3:2605588-2605607 | None:intergenic | 40.0% |
| ! | TTTGGGCTTTTCTTATCAGC+AGG | - | chr2_3:2605589-2605608 | None:intergenic | 40.0% |
| GCTGATAAGAAAAGCCCAAA+TGG | + | chr2_3:2605589-2605608 | Msa0271300:CDS | 40.0% | |
| AAAGCCCAAATGGAAAGCTA+AGG | + | chr2_3:2605599-2605618 | Msa0271300:CDS | 40.0% | |
| ATCTAGCATCCTTAGGTCTT+AGG | + | chr2_3:2605668-2605687 | Msa0271300:intron | 40.0% | |
| ACTAACTCTCCTAAGACCTA+AGG | - | chr2_3:2605680-2605699 | None:intergenic | 40.0% | |
| TATGGGCCTAATTCTTGAGT+CGG | - | chr2_3:2605779-2605798 | None:intergenic | 40.0% | |
| GGTTCGAGGACCTAAATTAT+TGG | + | chr2_3:2605802-2605821 | Msa0271300:intron | 40.0% | |
| GCCAAGTTCTCATCTATGTA+TGG | - | chr2_3:2605853-2605872 | None:intergenic | 40.0% | |
| TCATATTTGATGGAGCAAGC+AGG | + | chr2_3:2605990-2606009 | Msa0271300:CDS | 40.0% | |
| GCATCTCTGCATCTTCAATA+TGG | + | chr2_3:2606124-2606143 | Msa0271300:intron | 40.0% | |
| !!! | TTTTTTGCAGGCACTTGACT+TGG | + | chr2_3:2606293-2606312 | Msa0271300:intron | 40.0% |
| TCGTAGCTTCCAAGGAATAT+TGG | - | chr2_3:2606345-2606364 | None:intergenic | 40.0% | |
| CAATTTCATCGTAGCTTCCA+AGG | - | chr2_3:2606353-2606372 | None:intergenic | 40.0% | |
| CAGTTCTGTTAGCATCTGCT+TGG | - | chr2_3:2603022-2603041 | None:intergenic | 45.0% | |
| !! | GCTGGATTGGCAAAAATCCT+AGG | + | chr2_3:2603281-2603300 | Msa0271300:CDS | 45.0% |
| GCAAAAATCCTAGGACTTGC+TGG | + | chr2_3:2603290-2603309 | Msa0271300:CDS | 45.0% | |
| GAACTAGTGTGGTATCTCGT+TGG | - | chr2_3:2603536-2603555 | None:intergenic | 45.0% | |
| ! | AAGTTTGCTTAAACCGGTGG+AGG | - | chr2_3:2603811-2603830 | None:intergenic | 45.0% |
| TTCACCACTATTTAAGGGGG+AGG | + | chr2_3:2604176-2604195 | Msa0271300:intron | 45.0% | |
| ! | GTGCCTTCTTGTTTCAGAAG+AGG | + | chr2_3:2604400-2604419 | Msa0271300:intron | 45.0% |
| GTTGAAGATGCATTGCAACC+TGG | + | chr2_3:2604767-2604786 | Msa0271300:CDS | 45.0% | |
| ATTGCAACCTGGTAGCAGTT+TGG | + | chr2_3:2604778-2604797 | Msa0271300:CDS | 45.0% | |
| CATGTATGGAAGCTCTTGCA+CGG | + | chr2_3:2604817-2604836 | Msa0271300:CDS | 45.0% | |
| TTGCAGTTTGTGCTTAGCAC+AGG | + | chr2_3:2604995-2605014 | Msa0271300:intron | 45.0% | |
| AGCACAGGAAATGGAGTGAA+TGG | + | chr2_3:2605010-2605029 | Msa0271300:CDS | 45.0% | |
| ATGAGGGAAACGCCAAAAAC+TGG | + | chr2_3:2605231-2605250 | Msa0271300:CDS | 45.0% | |
| TGAGGGAAACGCCAAAAACT+GGG | + | chr2_3:2605232-2605251 | Msa0271300:CDS | 45.0% | |
| !!! | CGTTGGTTCATCCCAGTTTT+TGG | - | chr2_3:2605246-2605265 | None:intergenic | 45.0% |
| ! | ACCAACGGCCAAGTAAGTTT+TGG | + | chr2_3:2605259-2605278 | Msa0271300:intron | 45.0% |
| TCCAAAACTTACTTGGCCGT+TGG | - | chr2_3:2605263-2605282 | None:intergenic | 45.0% | |
| !! | TTTGGTGGTGAACTGTCTTG+TGG | - | chr2_3:2605405-2605424 | None:intergenic | 45.0% |
| GTTCACCACCAAAGTCTCTT+AGG | + | chr2_3:2605412-2605431 | Msa0271300:CDS | 45.0% | |
| CTGAATTCTCCCAAGACCTA+AGG | + | chr2_3:2605727-2605746 | Msa0271300:intron | 45.0% | |
| !! | TCCTTGCCGACTCAAGAATT+AGG | + | chr2_3:2605770-2605789 | Msa0271300:intron | 45.0% |
| TCAAGAATTAGGCCCATAGC+AGG | + | chr2_3:2605781-2605800 | Msa0271300:intron | 45.0% | |
| TATTTGATGGAGCAAGCAGG+AGG | + | chr2_3:2605993-2606012 | Msa0271300:CDS | 45.0% | |
| GATCGATCGCCAATATTCCT+TGG | + | chr2_3:2606333-2606352 | Msa0271300:CDS | 45.0% | |
| ! | TGGTGTGTCCGCACATGTTT+TGG | - | chr2_3:2603767-2603786 | None:intergenic | 50.0% |
| TGCTCCTCCCCCTTAAATAG+TGG | - | chr2_3:2604183-2604202 | None:intergenic | 50.0% | |
| GGGGGAGGAGCAAAAGAAAT+TGG | + | chr2_3:2604191-2604210 | Msa0271300:intron | 50.0% | |
| GTGAAGGCCTTAATCAGCAG+CGG | + | chr2_3:2604237-2604256 | Msa0271300:CDS | 50.0% | |
| GCAGCTGGTTACTGCATGTA+TGG | + | chr2_3:2604803-2604822 | Msa0271300:CDS | 50.0% | |
| GCCTAATTCTTGAGTCGGCA+AGG | - | chr2_3:2605774-2605793 | None:intergenic | 50.0% | |
| TAGGTCCTCGAACCTGCTAT+GGG | - | chr2_3:2605796-2605815 | None:intergenic | 50.0% | |
| TTAGGTCCTCGAACCTGCTA+TGG | - | chr2_3:2605797-2605816 | None:intergenic | 50.0% | |
| TGGTGTCTCCAGCAAGTCCT+AGG | - | chr2_3:2603301-2603320 | None:intergenic | 55.0% | |
| ! | TGTGCGTCCGCTGCTGATTA+AGG | - | chr2_3:2604247-2604266 | None:intergenic | 55.0% |
| GCTGCTACCAAACTGCTACC+AGG | - | chr2_3:2604788-2604807 | None:intergenic | 55.0% | |
| ! | GGTAGCAGTTTGGTAGCAGC+TGG | + | chr2_3:2604788-2604807 | Msa0271300:CDS | 55.0% |
| TTAGGCCCATAGCAGGTTCG+AGG | + | chr2_3:2605788-2605807 | Msa0271300:intron | 55.0% | |
| GCAGGAGGTCAAGCTTTCAC+AGG | + | chr2_3:2606008-2606027 | Msa0271300:CDS | 55.0% | |
| ! | TGACTTGCCACGCTGTGCTG+GGG | - | chr2_3:2604447-2604466 | None:intergenic | 60.0% |
| ! | CTGACTTGCCACGCTGTGCT+GGG | - | chr2_3:2604448-2604467 | None:intergenic | 60.0% |
| !! | ACTGACTTGCCACGCTGTGC+TGG | - | chr2_3:2604449-2604468 | None:intergenic | 60.0% |
| ATTGTGCCCCCAGCACAGCG+TGG | + | chr2_3:2604437-2604456 | Msa0271300:CDS | 65.0% | |
| GACTTGCCACGCTGTGCTGG+GGG | - | chr2_3:2604446-2604465 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 2603011 | 2606419 | 2603011 | ID=Msa0271300;Name=Msa0271300 |
| chr2_3 | mRNA | 2603011 | 2606419 | 2603011 | ID=Msa0271300-mRNA-1;Parent=Msa0271300;Name=Msa0271300-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.18|0.08|1|1|1|12|0|342 |
| chr2_3 | exon | 2603011 | 2603169 | 2603011 | ID=Msa0271300-mRNA-1:exon:1310;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2603281 | 2603328 | 2603281 | ID=Msa0271300-mRNA-1:exon:1311;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2604192 | 2604266 | 2604192 | ID=Msa0271300-mRNA-1:exon:1312;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2604401 | 2604462 | 2604401 | ID=Msa0271300-mRNA-1:exon:1313;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2604554 | 2604620 | 2604554 | ID=Msa0271300-mRNA-1:exon:1314;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2604725 | 2604838 | 2604725 | ID=Msa0271300-mRNA-1:exon:1315;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2605001 | 2605087 | 2605001 | ID=Msa0271300-mRNA-1:exon:1316;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2605200 | 2605270 | 2605200 | ID=Msa0271300-mRNA-1:exon:1317;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2605380 | 2605445 | 2605380 | ID=Msa0271300-mRNA-1:exon:1318;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2605534 | 2605620 | 2605534 | ID=Msa0271300-mRNA-1:exon:1319;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2605965 | 2606040 | 2605965 | ID=Msa0271300-mRNA-1:exon:1320;Parent=Msa0271300-mRNA-1 |
| chr2_3 | exon | 2606303 | 2606419 | 2606303 | ID=Msa0271300-mRNA-1:exon:1321;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2603011 | 2603169 | 2603011 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2603281 | 2603328 | 2603281 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2604192 | 2604266 | 2604192 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2604401 | 2604462 | 2604401 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2604554 | 2604620 | 2604554 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2604725 | 2604838 | 2604725 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2605001 | 2605087 | 2605001 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2605200 | 2605270 | 2605200 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2605380 | 2605445 | 2605380 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2605534 | 2605620 | 2605534 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2605965 | 2606040 | 2605965 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| chr2_3 | CDS | 2606303 | 2606419 | 2606303 | ID=Msa0271300-mRNA-1:cds;Parent=Msa0271300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
