Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984460 | SCA59531.1 | 93.773 | 546 | 29 | 1 | 1 | 541 | 60 | 605 | 0.0 | 1033 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984460 | sp|Q9FLV9|SLAH3_ARATH | 64.069 | 462 | 148 | 7 | 75 | 525 | 167 | 621 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984460 | A0A1C3RMF1 | 93.773 | 546 | 29 | 1 | 1 | 541 | 60 | 605 | 0.0 | 1033 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012780 | Msa0984460 | 0.864612 | 1.072660e-64 | -8.615850e-47 |
| Msa0012790 | Msa0984460 | 0.814752 | 1.313104e-51 | -8.615850e-47 |
| Msa0012810 | Msa0984460 | 0.806890 | 6.603000e-50 | -8.615850e-47 |
| Msa0012820 | Msa0984460 | 0.832093 | 1.150681e-55 | -8.615850e-47 |
| Msa0029010 | Msa0984460 | 0.807954 | 3.927822e-50 | -8.615850e-47 |
| Msa0029020 | Msa0984460 | 0.855919 | 4.565397e-62 | -8.615850e-47 |
| Msa0037500 | Msa0984460 | 0.836078 | 1.155486e-56 | -8.615850e-47 |
| Msa0048950 | Msa0984460 | 0.805168 | 1.520339e-49 | -8.615850e-47 |
| Msa0059880 | Msa0984460 | 0.835857 | 1.314407e-56 | -8.615850e-47 |
| Msa0061590 | Msa0984460 | 0.832119 | 1.133485e-55 | -8.615850e-47 |
| Msa0061600 | Msa0984460 | 0.858309 | 9.003012e-63 | -8.615850e-47 |
| Msa0062020 | Msa0984460 | 0.811041 | 8.535782e-51 | -8.615850e-47 |
| Msa0072030 | Msa0984460 | 0.806632 | 7.484443e-50 | -8.615850e-47 |
| Msa0076650 | Msa0984460 | 0.854574 | 1.124040e-61 | -8.615850e-47 |
| Msa0089010 | Msa0984460 | -0.803648 | 3.153245e-49 | -8.615850e-47 |
| Msa0090040 | Msa0984460 | 0.808030 | 3.783922e-50 | -8.615850e-47 |
| Msa0106110 | Msa0984460 | 0.867387 | 1.421206e-65 | -8.615850e-47 |
| Msa0106120 | Msa0984460 | 0.836034 | 1.185265e-56 | -8.615850e-47 |
| Msa0106130 | Msa0984460 | 0.834320 | 3.209307e-56 | -8.615850e-47 |
| Msa0678240 | Msa0984460 | -0.801427 | 9.050140e-49 | -8.615850e-47 |
| Msa0707040 | Msa0984460 | -0.814003 | 1.921659e-51 | -8.615850e-47 |
| Msa0736710 | Msa0984460 | 0.821200 | 4.581811e-53 | -8.615850e-47 |
| Msa0811000 | Msa0984460 | -0.827387 | 1.609492e-54 | -8.615850e-47 |
| Msa0813030 | Msa0984460 | -0.804437 | 2.161284e-49 | -8.615850e-47 |
| Msa0815750 | Msa0984460 | 0.820748 | 5.822631e-53 | -8.615850e-47 |
| Msa0826650 | Msa0984460 | -0.802700 | 4.954948e-49 | -8.615850e-47 |
| Msa0842050 | Msa0984460 | -0.803405 | 3.541153e-49 | -8.615850e-47 |
| Msa0139460 | Msa0984460 | 0.809297 | 2.028389e-50 | -8.615850e-47 |
| Msa0150910 | Msa0984460 | 0.823439 | 1.384410e-53 | -8.615850e-47 |
| Msa0152640 | Msa0984460 | 0.827453 | 1.551420e-54 | -8.615850e-47 |
| Msa0152650 | Msa0984460 | 0.820283 | 7.443813e-53 | -8.615850e-47 |
| Msa0152660 | Msa0984460 | 0.836198 | 1.077226e-56 | -8.615850e-47 |
| Msa0152740 | Msa0984460 | 0.863214 | 2.920173e-64 | -8.615850e-47 |
| Msa0153440 | Msa0984460 | -0.827845 | 1.249044e-54 | -8.615850e-47 |
| Msa0169050 | Msa0984460 | 0.824820 | 6.559993e-54 | -8.615850e-47 |
| Msa0199740 | Msa0984460 | -0.801479 | 8.829511e-49 | -8.615850e-47 |
| Msa0226410 | Msa0984460 | 0.816305 | 5.920890e-52 | -8.615850e-47 |
| Msa0389050 | Msa0984460 | -0.802525 | 5.384429e-49 | -8.615850e-47 |
| Msa0405250 | Msa0984460 | 0.824572 | 7.508177e-54 | -8.615850e-47 |
| Msa0455260 | Msa0984460 | -0.845847 | 3.145415e-59 | -8.615850e-47 |
| Msa0984460 | Msa1004260 | -0.800345 | 1.505742e-48 | -8.615850e-47 |
| Msa0984460 | Msa1009170 | -0.805488 | 1.302976e-49 | -8.615850e-47 |
| Msa0984460 | Msa1024350 | 0.809206 | 2.121967e-50 | -8.615850e-47 |
| Msa0984460 | Msa1080460 | -0.814636 | 1.392492e-51 | -8.615850e-47 |
| Msa0984460 | Msa1109890 | 0.817770 | 2.775189e-52 | -8.615850e-47 |
| Msa0984460 | Msa1115830 | -0.816106 | 6.562493e-52 | -8.615850e-47 |
| Msa0984460 | Msa1133530 | -0.821156 | 4.690265e-53 | -8.615850e-47 |
| Msa0984460 | Msa1138450 | -0.813645 | 2.304905e-51 | -8.615850e-47 |
| Msa0984460 | Msa1138480 | -0.822128 | 2.795394e-53 | -8.615850e-47 |
| Msa0984460 | Msa1138490 | -0.807672 | 4.507750e-50 | -8.615850e-47 |
| Msa0984460 | Msa1139240 | -0.807749 | 4.342183e-50 | -8.615850e-47 |
| Msa0984460 | Msa1167000 | -0.801860 | 7.377847e-49 | -8.615850e-47 |
| Msa0984460 | Msa1182830 | -0.814928 | 1.199914e-51 | -8.615850e-47 |
| Msa0984460 | Msa1207480 | 0.830754 | 2.457485e-55 | -8.615850e-47 |
| Msa0984460 | Msa1222030 | 0.820888 | 5.407160e-53 | -8.615850e-47 |
| Msa0984460 | Msa1238480 | -0.822932 | 1.817764e-53 | -8.615850e-47 |
| Msa0984460 | Msa1258280 | -0.812844 | 3.454858e-51 | -8.615850e-47 |
| Msa0984460 | Msa1262810 | 0.801327 | 9.489513e-49 | -8.615850e-47 |
| Msa0984460 | Msa1298290 | -0.805110 | 1.563551e-49 | -8.615850e-47 |
| Msa0984460 | Msa1323160 | 0.818548 | 1.851225e-52 | -8.615850e-47 |
| Msa0984460 | Msa1328750 | -0.815282 | 1.001458e-51 | -8.615850e-47 |
| Msa0984460 | Msa1365120 | -0.801647 | 8.157631e-49 | -8.615850e-47 |
| Msa0984460 | Msa1371080 | 0.801874 | 7.329669e-49 | -8.615850e-47 |
| Msa0984460 | Msa1460310 | 0.847379 | 1.200368e-59 | -8.615850e-47 |
| Msa0264940 | Msa0984460 | 0.848627 | 5.432853e-60 | -8.615850e-47 |
| Msa0302990 | Msa0984460 | 0.846973 | 1.550665e-59 | -8.615850e-47 |
| Msa0304550 | Msa0984460 | 0.805966 | 1.033987e-49 | -8.615850e-47 |
| Msa0341110 | Msa0984460 | 0.817738 | 2.822608e-52 | -8.615850e-47 |
| Msa0363440 | Msa0984460 | -0.825934 | 3.575598e-54 | -8.615850e-47 |
| Msa0599250 | Msa0984460 | -0.815235 | 1.025963e-51 | -8.615850e-47 |
| Msa0853500 | Msa0984460 | -0.812354 | 4.422121e-51 | -8.615850e-47 |
| Msa0854840 | Msa0984460 | 0.800016 | 1.756075e-48 | -8.615850e-47 |
| Msa0862020 | Msa0984460 | -0.845777 | 3.286163e-59 | -8.615850e-47 |
| Msa0882880 | Msa0984460 | 0.945969 | 1.123930e-104 | -8.615850e-47 |
| Msa0910250 | Msa0984460 | 0.937860 | 1.740863e-98 | -8.615850e-47 |
| Msa0910830 | Msa0984460 | 0.801598 | 8.349647e-49 | -8.615850e-47 |
| Msa0929400 | Msa0984460 | -0.802682 | 4.995478e-49 | -8.615850e-47 |
| Msa0944690 | Msa0984460 | -0.809753 | 1.619162e-50 | -8.615850e-47 |
| Msa0948050 | Msa0984460 | 0.979687 | 1.613259e-148 | -8.615850e-47 |
| Msa0951720 | Msa0984460 | -0.804002 | 2.662495e-49 | -8.615850e-47 |
| Msa0960090 | Msa0984460 | 0.800557 | 1.362664e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984460 | MtrunA17_Chr6g0462881 | 93.956 | 546 | 27 | 2 | 1 | 541 | 60 | 604 | 0.0 | 1031 |
| Msa0984460 | MtrunA17_Chr6g0462891 | 88.095 | 546 | 57 | 4 | 1 | 540 | 70 | 613 | 0.0 | 965 |
| Msa0984460 | MtrunA17_Chr4g0056691 | 46.950 | 541 | 258 | 10 | 10 | 538 | 33 | 556 | 1.10e-154 | 454 |
| Msa0984460 | MtrunA17_Chr4g0024991 | 41.479 | 311 | 166 | 4 | 174 | 469 | 53 | 362 | 5.32e-67 | 221 |
| Msa0984460 | MtrunA17_Chr3g0142181 | 38.957 | 326 | 181 | 6 | 174 | 484 | 55 | 377 | 6.20e-63 | 211 |
| Msa0984460 | MtrunA17_Chr4g0075171 | 33.231 | 325 | 202 | 5 | 159 | 468 | 32 | 356 | 6.75e-55 | 189 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0984460 | AT5G24030.1 | 64.069 | 462 | 148 | 7 | 75 | 525 | 167 | 621 | 0.0 | 590 |
| Msa0984460 | AT4G27970.1 | 59.259 | 486 | 171 | 8 | 49 | 528 | 41 | 505 | 0.0 | 555 |
| Msa0984460 | AT4G27970.6 | 59.259 | 486 | 171 | 8 | 49 | 528 | 41 | 505 | 0.0 | 555 |
| Msa0984460 | AT5G24030.2 | 69.184 | 331 | 93 | 4 | 75 | 402 | 167 | 491 | 2.67e-162 | 471 |
| Msa0984460 | AT4G27970.4 | 65.156 | 353 | 105 | 4 | 49 | 401 | 41 | 375 | 6.02e-161 | 464 |
| Msa0984460 | AT4G27970.2 | 65.156 | 353 | 105 | 4 | 49 | 401 | 41 | 375 | 6.02e-161 | 464 |
| Msa0984460 | AT4G27970.3 | 61.308 | 367 | 133 | 4 | 176 | 536 | 1 | 364 | 2.82e-151 | 438 |
| Msa0984460 | AT4G27970.5 | 61.308 | 367 | 133 | 4 | 176 | 536 | 1 | 364 | 2.82e-151 | 438 |
| Msa0984460 | AT1G12480.1 | 54.118 | 425 | 179 | 5 | 87 | 495 | 102 | 526 | 1.15e-150 | 443 |
| Msa0984460 | AT1G62280.1 | 37.582 | 306 | 177 | 6 | 174 | 466 | 46 | 350 | 5.59e-64 | 214 |
| Msa0984460 | AT1G62262.1 | 35.621 | 306 | 175 | 5 | 174 | 466 | 46 | 342 | 1.51e-57 | 196 |
Find 155 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATAAGATTAGGTTTATTT+TGG | 0.111313 | 6_4:+29118059 | None:intergenic |
| GCAACCGAATATTCTTATTT+TGG | 0.160615 | 6_4:+29116673 | None:intergenic |
| CAAAACCGTCATTTCATAAA+AGG | 0.187048 | 6_4:-29116535 | Msa0984460:three_prime_UTR |
| CACTTCATTTGATTCTTTCT+TGG | 0.200378 | 6_4:+29115862 | None:intergenic |
| AGACATATAAGGTAGGTATT+TGG | 0.208489 | 6_4:+29116062 | None:intergenic |
| AATGACTTAGTGACAATATT+TGG | 0.219874 | 6_4:+29116973 | None:intergenic |
| GACTTAAGAGTTTCTAATTC+TGG | 0.231355 | 6_4:+29118237 | None:intergenic |
| AGTGATTATACGCCGGTATT+TGG | 0.234264 | 6_4:-29116271 | Msa0984460:three_prime_UTR |
| GTTGATTATAAACGATAAAT+TGG | 0.234452 | 6_4:-29115721 | Msa0984460:three_prime_UTR |
| ATTGGTTGAGACTTGAATTT+TGG | 0.251980 | 6_4:+29118516 | None:intergenic |
| ATCTTGGTTTCGAGAAATTA+AGG | 0.265711 | 6_4:-29115909 | Msa0984460:three_prime_UTR |
| ACCAAGAATGTTTCCTTTAG+TGG | 0.275047 | 6_4:-29118603 | Msa0984460:CDS |
| ACTTCATTTGATTCTTTCTT+GGG | 0.279314 | 6_4:+29115863 | None:intergenic |
| TCCACTAAAGGAAACATTCT+TGG | 0.287959 | 6_4:+29118602 | None:intergenic |
| TGTCTCGAGCTTAAGATTTA+CGG | 0.289775 | 6_4:-29117817 | Msa0984460:CDS |
| GACATATAAGGTAGGTATTT+GGG | 0.294630 | 6_4:+29116063 | None:intergenic |
| TTGCACCCTTCACAAAATAA+TGG | 0.297910 | 6_4:-29116214 | Msa0984460:three_prime_UTR |
| ATGGCAATAGCAATGTCATT+AGG | 0.310404 | 6_4:+29116859 | None:intergenic |
| TGTTGGTAAGTAACTCCTTT+TGG | 0.316133 | 6_4:+29118492 | None:intergenic |
| TTTGCCAAAATAAGAATATT+CGG | 0.320340 | 6_4:-29116677 | Msa0984460:exon |
| ATAATGTACCATTTCTCTAT+TGG | 0.321654 | 6_4:+29116184 | None:intergenic |
| AGCTCCTAGTGTTGCTTCAA+TGG | 0.322868 | 6_4:-29117548 | Msa0984460:CDS |
| TTAGCAGCCAAGCAATTCTT+TGG | 0.324898 | 6_4:-29118128 | Msa0984460:CDS |
| CCAAAATAAACCTAATCTTA+TGG | 0.332000 | 6_4:-29118059 | Msa0984460:CDS |
| TTGGTGTACTTCTTGTTAAA+TGG | 0.334136 | 6_4:-29115702 | Msa0984460:three_prime_UTR |
| AGGTAGGTATTTGGGTTTAG+TGG | 0.338684 | 6_4:+29116071 | None:intergenic |
| TTTCAATCTCTTTGGAGTCT+TGG | 0.340201 | 6_4:+29116782 | None:intergenic |
| GGGAGTTATGTGAAGGAATT+CGG | 0.343526 | 6_4:+29118080 | None:intergenic |
| GTTTCTAACATTAGAACATC+TGG | 0.346990 | 6_4:+29116557 | None:intergenic |
| CTAGTGTTGCTTCAATGGCT+TGG | 0.355081 | 6_4:-29117543 | Msa0984460:CDS |
| AGTGGTGGTTGTCCTCTAAC+CGG | 0.356956 | 6_4:+29116089 | None:intergenic |
| ATCTCTATGGTACATTCTTA+TGG | 0.359149 | 6_4:-29117851 | Msa0984460:CDS |
| TCAAATCATTTATCAGTTGT+TGG | 0.360276 | 6_4:-29117745 | Msa0984460:CDS |
| TCCGGTTCCAAGGCCTACTA+TGG | 0.361737 | 6_4:-29116480 | Msa0984460:three_prime_UTR |
| CCAACAGCAAAGAAGAAAAT+TGG | 0.369223 | 6_4:+29117673 | None:intergenic |
| AACACTGGATGTAGCTCTTT+AGG | 0.372096 | 6_4:+29117586 | None:intergenic |
| TAGTGTTGCTTCAATGGCTT+GGG | 0.373598 | 6_4:-29117542 | Msa0984460:CDS |
| GAGAATATAGACAGCGAAAA+TGG | 0.378577 | 6_4:+29118011 | None:intergenic |
| CTCTTTAGGTAGTGTTGCAT+TGG | 0.379987 | 6_4:+29117600 | None:intergenic |
| AAAACCTACATCAATCTCTA+TGG | 0.381498 | 6_4:-29117864 | Msa0984460:CDS |
| CGGAGATGTACCATAAGATT+AGG | 0.387385 | 6_4:+29118049 | None:intergenic |
| ATAGGGCATTACCTGTTGAT+AGG | 0.387872 | 6_4:-29118281 | Msa0984460:CDS |
| AGAAGCAATTTCACTAGATA+TGG | 0.390677 | 6_4:-29115778 | Msa0984460:three_prime_UTR |
| CGGTTCCCCGTTTCATCGTT+CGG | 0.391099 | 6_4:-29118165 | Msa0984460:CDS |
| TCAGTTGTTGGAAACTTTGT+TGG | 0.392188 | 6_4:-29117733 | Msa0984460:CDS |
| AACAATGGCCGTTTCTTCTC+CGG | 0.397146 | 6_4:-29118185 | Msa0984460:CDS |
| AATCTCAACATTCACGGTTA+TGG | 0.397308 | 6_4:-29116932 | Msa0984460:CDS |
| CTTTCTCCTTCTATCACTAA+TGG | 0.397340 | 6_4:+29116840 | None:intergenic |
| GCATTAACCATAGTAGGCCT+TGG | 0.397634 | 6_4:+29116473 | None:intergenic |
| CACTGGTTAGGGTTCAGATA+TGG | 0.404152 | 6_4:-29116808 | Msa0984460:CDS |
| ACGCTACAAGAAGCTTTGAT+AGG | 0.404558 | 6_4:-29118299 | Msa0984460:CDS |
| AAGCCACATAAACACTGGTT+AGG | 0.404899 | 6_4:-29116820 | Msa0984460:CDS |
| TATTTAGCATTAACCATAGT+AGG | 0.405311 | 6_4:+29116467 | None:intergenic |
| CTATTGCCATTAGTGATAGA+AGG | 0.408483 | 6_4:-29116846 | Msa0984460:CDS |
| TGGCAATAGCAATGTCATTA+GGG | 0.415303 | 6_4:+29116860 | None:intergenic |
| CGGTGGTAGGCGATGTGGCT+AGG | 0.417492 | 6_4:+29118100 | None:intergenic |
| GACTCGTTCAAAACATGGTC+TGG | 0.417748 | 6_4:-29118393 | Msa0984460:CDS |
| GTATTAAGCCAAGACATATA+AGG | 0.422347 | 6_4:+29116051 | None:intergenic |
| ATAAGGGTCTGCAACGATCT+AGG | 0.422866 | 6_4:-29116640 | Msa0984460:three_prime_UTR |
| ATATGCTTCTACAGGCTGTC+AGG | 0.429218 | 6_4:-29117202 | Msa0984460:intron |
| CATATACCGAACGATGAAAC+GGG | 0.430087 | 6_4:+29118159 | None:intergenic |
| ATGGCTTGGGCTAAGATTCA+AGG | 0.432952 | 6_4:-29117529 | Msa0984460:CDS |
| GCAATTGCTGCACCAGTCAT+TGG | 0.435263 | 6_4:+29117021 | None:intergenic |
| GAACACTGATGATAGTAGTT+TGG | 0.436563 | 6_4:-29116743 | Msa0984460:CDS |
| TTAAGCTCGAGACATAATAT+TGG | 0.444167 | 6_4:+29117826 | None:intergenic |
| GCATCAAAATACCTATCAAC+AGG | 0.446386 | 6_4:+29118270 | None:intergenic |
| GCATATACCGAACGATGAAA+CGG | 0.446798 | 6_4:+29118158 | None:intergenic |
| TTAGGTAGTGTTGCATTGGT+TGG | 0.448645 | 6_4:+29117604 | None:intergenic |
| TAAATATTCCTCATGTTGAT+TGG | 0.449387 | 6_4:-29116450 | Msa0984460:three_prime_UTR |
| ACAACTGATAAATGATTTGA+AGG | 0.451534 | 6_4:+29117748 | None:intergenic |
| AACCCTAACCAGTGTTTATG+TGG | 0.454199 | 6_4:+29116817 | None:intergenic |
| GGCTCTAATCTCAACATTCA+CGG | 0.461413 | 6_4:-29116938 | Msa0984460:CDS |
| AAAAGGGAAAGCGTTTGTAT+TGG | 0.461981 | 6_4:-29116518 | Msa0984460:three_prime_UTR |
| AATACCTACCTTATATGTCT+TGG | 0.462475 | 6_4:-29116059 | Msa0984460:three_prime_UTR |
| AACTTTGTTGGAGCGTTACT+TGG | 0.463926 | 6_4:-29117721 | Msa0984460:CDS |
| AATAAGAATATTCGGTTGCA+AGG | 0.468660 | 6_4:-29116669 | Msa0984460:exon |
| CAATAAAGTTGTAGTTGAGT+TGG | 0.470878 | 6_4:-29116149 | Msa0984460:three_prime_UTR |
| CGAACGATGAAACGGGGAAC+CGG | 0.472041 | 6_4:+29118166 | None:intergenic |
| CTACTTCGAAGCAGTTCGTC+GGG | 0.477986 | 6_4:-29117977 | Msa0984460:CDS |
| CGAAAGCCGCCTTTGTCCAC+CGG | 0.482961 | 6_4:+29117783 | None:intergenic |
| AGCGTTACTTGGTGCATCGA+TGG | 0.486089 | 6_4:-29117710 | Msa0984460:CDS |
| TCATTTGATTCTTTCTTGGG+TGG | 0.486537 | 6_4:+29115866 | None:intergenic |
| GCATCGTTTGAGGACGGTTG+TGG | 0.487768 | 6_4:+29116709 | None:intergenic |
| ACCAGTCATTGGAAAAGTAT+AGG | 0.490366 | 6_4:+29117032 | None:intergenic |
| GAGTTTGAGAACCATCTTGT+TGG | 0.490450 | 6_4:+29118475 | None:intergenic |
| AAGAAGAAGTTAACACGGAT+TGG | 0.491885 | 6_4:+29117943 | None:intergenic |
| AAAACCGTCATTTCATAAAA+GGG | 0.493099 | 6_4:-29116534 | Msa0984460:three_prime_UTR |
| GAAATTAAGGATATTGAAAG+AGG | 0.500200 | 6_4:-29115896 | Msa0984460:three_prime_UTR |
| TAAGTCATTGTGTGTTGCAT+TGG | 0.500305 | 6_4:-29116959 | Msa0984460:CDS |
| CCATCTTGTGCATTTCCACT+CGG | 0.503604 | 6_4:+29118327 | None:intergenic |
| AGCTTAAGATTTACGGACAA+TGG | 0.504721 | 6_4:-29117810 | Msa0984460:CDS |
| GTGGTGGTTGTCCTCTAACC+GGG | 0.506374 | 6_4:+29116090 | None:intergenic |
| GATTTGCACCAATAGAGAAA+TGG | 0.506579 | 6_4:-29116192 | Msa0984460:three_prime_UTR |
| ACCATAGTAGGCCTTGGAAC+CGG | 0.507233 | 6_4:+29116479 | None:intergenic |
| GAGTTGGCAAAACATGAAAT+CGG | 0.514976 | 6_4:-29116133 | Msa0984460:three_prime_UTR |
| GGTGGTAGGCGATGTGGCTA+GGG | 0.515104 | 6_4:+29118101 | None:intergenic |
| TAGGTATTTGGGTTTAGTGG+TGG | 0.515670 | 6_4:+29116074 | None:intergenic |
| ACGGGGAACCGGAGAAGAAA+CGG | 0.516364 | 6_4:+29118177 | None:intergenic |
| TGTTTCTCACTTCCAAATAC+CGG | 0.520005 | 6_4:+29116259 | None:intergenic |
| GAACTGCTTCGAAGTAGAAA+AGG | 0.521206 | 6_4:+29117983 | None:intergenic |
| CAAGCCATTGAAGCAACACT+AGG | 0.534868 | 6_4:+29117544 | None:intergenic |
| ATTTACGGACAATGGATGTC+CGG | 0.537992 | 6_4:-29117802 | Msa0984460:CDS |
| TGTACCATAGAGATTGATGT+AGG | 0.539740 | 6_4:+29117860 | None:intergenic |
| CGCTACAAGAAGCTTTGATA+GGG | 0.540378 | 6_4:-29118298 | Msa0984460:CDS |
| TGAGTTTCTTTATAACAAAG+TGG | 0.544697 | 6_4:+29118651 | None:intergenic |
| TGGTAATCCATCGCCTACTC+CGG | 0.545805 | 6_4:-29116498 | Msa0984460:three_prime_UTR |
| GCGTTACTTGGTGCATCGAT+GGG | 0.546328 | 6_4:-29117709 | Msa0984460:CDS |
| AAGTCTCAACCAATGCCAAA+AGG | 0.547948 | 6_4:-29118507 | Msa0984460:CDS |
| GTCAGGATCAATTTCTTCAG+AGG | 0.548320 | 6_4:-29117185 | Msa0984460:CDS |
| GCATCGATGGGACTAATTGA+AGG | 0.552203 | 6_4:-29117697 | Msa0984460:CDS |
| GGAGTTACTTACCAACAAGA+TGG | 0.552350 | 6_4:-29118486 | Msa0984460:CDS |
| TGGACAAAGGCGGCTTTCGA+AGG | 0.557619 | 6_4:-29117779 | Msa0984460:CDS |
| CATCGCCTACTCCGGTTCCA+AGG | 0.558066 | 6_4:-29116490 | Msa0984460:three_prime_UTR |
| TCATCGTTCGGTATATGCCT+CGG | 0.559454 | 6_4:-29118153 | Msa0984460:CDS |
| AGAAGTTAACACGGATTGGA+TGG | 0.561531 | 6_4:+29117947 | None:intergenic |
| AGCCACATAAACACTGGTTA+GGG | 0.563075 | 6_4:-29116819 | Msa0984460:CDS |
| TTCAAAACATGGTCTGGTGG+AGG | 0.567930 | 6_4:-29118387 | Msa0984460:CDS |
| GTGGAAACTACACAAGAAAG+AGG | 0.576790 | 6_4:-29115967 | Msa0984460:three_prime_UTR |
| TCTACTTCGAAGCAGTTCGT+CGG | 0.581441 | 6_4:-29117978 | Msa0984460:CDS |
| ACAAAGGCGGCTTTCGAAGG+TGG | 0.582957 | 6_4:-29117776 | Msa0984460:CDS |
| ATGTGAAGGAATTCGGTGGT+AGG | 0.587839 | 6_4:+29118087 | None:intergenic |
| AATCGTAATTATAATCAACC+TGG | 0.590471 | 6_4:-29118444 | Msa0984460:CDS |
| GATTTGACTCGTTCAAAACA+TGG | 0.592105 | 6_4:-29118398 | Msa0984460:CDS |
| TGCTACCTCATGACAAACAA+TGG | 0.595420 | 6_4:-29118200 | Msa0984460:CDS |
| AATGGATGTCCGGTGGACAA+AGG | 0.597830 | 6_4:-29117792 | Msa0984460:CDS |
| CTTGGAACCGGAGTAGGCGA+TGG | 0.598752 | 6_4:+29116491 | None:intergenic |
| TGATCGGCATCGTTTGAGGA+CGG | 0.600030 | 6_4:+29116703 | None:intergenic |
| AACGGCCATTGTTTGTCATG+AGG | 0.606151 | 6_4:+29118195 | None:intergenic |
| CAACTGATAAATGATTTGAA+GGG | 0.610598 | 6_4:+29117749 | None:intergenic |
| TTAACTTCTTCTTCGCACCG+TGG | 0.611868 | 6_4:-29117933 | Msa0984460:CDS |
| AGATGGTTCTCAAACTCGAA+AGG | 0.612078 | 6_4:-29118469 | Msa0984460:CDS |
| AGTTTCCACACTGTGCATGA+TGG | 0.612715 | 6_4:+29115981 | None:intergenic |
| TCAGACATTGCAATTCCTGA+TGG | 0.614715 | 6_4:+29118552 | None:intergenic |
| GTAGGCCTTGGAACCGGAGT+AGG | 0.615320 | 6_4:+29116485 | None:intergenic |
| TCGTTCAAAACATGGTCTGG+TGG | 0.618207 | 6_4:-29118390 | Msa0984460:CDS |
| CCGAGTGGAAATGCACAAGA+TGG | 0.618656 | 6_4:-29118327 | Msa0984460:CDS |
| TCATCATCTTCACTATCAAG+AGG | 0.627498 | 6_4:+29115830 | None:intergenic |
| GAATTCGGTGGTAGGCGATG+TGG | 0.633433 | 6_4:+29118095 | None:intergenic |
| GGAGAAAGCCACATAAACAC+TGG | 0.639503 | 6_4:-29116825 | Msa0984460:CDS |
| GGATGTCCGGTGGACAAAGG+CGG | 0.650208 | 6_4:-29117789 | Msa0984460:CDS |
| TTCCACACTGTGCATGATGG+AGG | 0.652441 | 6_4:+29115984 | None:intergenic |
| AAAGACATCCAATCAACATG+AGG | 0.661921 | 6_4:+29116442 | None:intergenic |
| GCAACAAAGAGAAAGAACAC+TGG | 0.662189 | 6_4:+29117571 | None:intergenic |
| TAAGCCAAGACATATAAGGT+AGG | 0.662511 | 6_4:+29116055 | None:intergenic |
| TACCTCCATCATGCACAGTG+TGG | 0.668941 | 6_4:-29115986 | Msa0984460:three_prime_UTR |
| TCATAAGAGTGATTATACGC+CGG | 0.683828 | 6_4:-29116278 | Msa0984460:three_prime_UTR |
| GTAGCTGTACATGTTAGTGT+AGG | 0.691658 | 6_4:-29116352 | Msa0984460:three_prime_UTR |
| AGTTATGTGAAGGAATTCGG+TGG | 0.705029 | 6_4:+29118083 | None:intergenic |
| TTGCTTGGCTGCTAACTCCG+AGG | 0.712685 | 6_4:+29118136 | None:intergenic |
| GTGCGAAGAAGAAGTTAACA+CGG | 0.725245 | 6_4:+29117938 | None:intergenic |
| ATATACCGAACGATGAAACG+GGG | 0.734350 | 6_4:+29118160 | None:intergenic |
| AATCTTATGGTACATCTCCG+CGG | 0.740138 | 6_4:-29118046 | Msa0984460:CDS |
| AATGGTAGCTATAAGTACCG+CGG | 0.745035 | 6_4:+29118029 | None:intergenic |
| CTACGTGGAAAAGAACCGAG+TGG | 0.750541 | 6_4:-29118342 | Msa0984460:CDS |
| AGACAATTATCGATTCTACG+TGG | 0.759063 | 6_4:-29118357 | Msa0984460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTAAATTTATTTTTTG+AGG | - | chr6_4:29116998-29117017 | Msa0984460:CDS | 10.0% |
| !!! | TATTAAATTTATTTTTTGAG+GGG | - | chr6_4:29117000-29117019 | Msa0984460:CDS | 10.0% |
| !! | TTAAATAATATAACTAGATA+GGG | + | chr6_4:29117224-29117243 | None:intergenic | 10.0% |
| !! | ATTAAATAATATAACTAGAT+AGG | + | chr6_4:29117225-29117244 | None:intergenic | 10.0% |
| !!! | ATTAAATTTATTTTTTGAGG+GGG | - | chr6_4:29117001-29117020 | Msa0984460:CDS | 15.0% |
| !!! | AACAATTATGCATATTTTTT+TGG | + | chr6_4:29117109-29117128 | None:intergenic | 15.0% |
| !! | TAAATAATATAACTAGATAG+GGG | + | chr6_4:29117223-29117242 | None:intergenic | 15.0% |
| !!! | CATAAGATTAGGTTTATTTT+GGG | + | chr6_4:29116301-29116320 | None:intergenic | 20.0% |
| !! | AAAATAAATTTAATATCGCG+TGG | + | chr6_4:29116995-29117014 | None:intergenic | 20.0% |
| !!! | ATTATGCATATTTTTTTGGT+GGG | + | chr6_4:29117105-29117124 | None:intergenic | 20.0% |
| !!! | AATTATGCATATTTTTTTGG+TGG | + | chr6_4:29117106-29117125 | None:intergenic | 20.0% |
| !!! | TTATTTTGGCAAATTTTGAT+CGG | + | chr6_4:29117674-29117693 | None:intergenic | 20.0% |
| !! | TTTGCCAAAATAAGAATATT+CGG | - | chr6_4:29117681-29117700 | Msa0984460:CDS | 20.0% |
| !!! | GTGATATGAATATACTTTTT+TGG | - | chr6_4:29118419-29118438 | Msa0984460:CDS | 20.0% |
| !! | GTTGATTATAAACGATAAAT+TGG | - | chr6_4:29118637-29118656 | Msa0984460:CDS | 20.0% |
| ! | TGAGTTTCTTTATAACAAAG+TGG | + | chr6_4:29115710-29115729 | None:intergenic | 25.0% |
| !! | AATAACATTTTCTCCACTAA+AGG | + | chr6_4:29115771-29115790 | None:intergenic | 25.0% |
| ! | AATCGTAATTATAATCAACC+TGG | - | chr6_4:29115914-29115933 | Msa0984460:three_prime_UTR | 25.0% |
| !! | TCTCTAAACATTTTTATTCC+AGG | + | chr6_4:29115935-29115954 | None:intergenic | 25.0% |
| !! | CCATAAGATTAGGTTTATTT+TGG | + | chr6_4:29116302-29116321 | None:intergenic | 25.0% |
| ! | CCAAAATAAACCTAATCTTA+TGG | - | chr6_4:29116299-29116318 | Msa0984460:three_prime_UTR | 25.0% |
| ! | CAACTGATAAATGATTTGAA+GGG | + | chr6_4:29116612-29116631 | None:intergenic | 25.0% |
| ! | ACAACTGATAAATGATTTGA+AGG | + | chr6_4:29116613-29116632 | None:intergenic | 25.0% |
| ! | TCAAATCATTTATCAGTTGT+TGG | - | chr6_4:29116613-29116632 | Msa0984460:three_prime_UTR | 25.0% |
| !!! | ATTCAAGGTTCTTTTGATTA+TGG | - | chr6_4:29116844-29116863 | Msa0984460:CDS | 25.0% |
| !! | ATTGTTCCTTTATTTCTCAT+TGG | - | chr6_4:29116891-29116910 | Msa0984460:CDS | 25.0% |
| ! | AACTTACCAATGAGAAATAA+AGG | + | chr6_4:29116900-29116919 | None:intergenic | 25.0% |
| !!! | TTATGCATATTTTTTTGGTG+GGG | + | chr6_4:29117104-29117123 | None:intergenic | 25.0% |
| ! | TATCATTGAAATTTACTCAC+TGG | - | chr6_4:29117129-29117148 | Msa0984460:intron | 25.0% |
| ! | AATGACTTAGTGACAATATT+TGG | + | chr6_4:29117388-29117407 | None:intergenic | 25.0% |
| !! | CAAGTAATTTTCAATCTCTT+TGG | + | chr6_4:29117587-29117606 | None:intergenic | 25.0% |
| !!! | TGTGACATCAATGTTTTTTA+TGG | - | chr6_4:29117742-29117761 | Msa0984460:CDS | 25.0% |
| ! | AAAACCGTCATTTCATAAAA+GGG | - | chr6_4:29117824-29117843 | Msa0984460:CDS | 25.0% |
| ! | TATTTAGCATTAACCATAGT+AGG | + | chr6_4:29117894-29117913 | None:intergenic | 25.0% |
| ! | TAAATATTCCTCATGTTGAT+TGG | - | chr6_4:29117908-29117927 | Msa0984460:CDS | 25.0% |
| ! | TCCATACATTGAAAAAAATG+TGG | - | chr6_4:29117948-29117967 | Msa0984460:CDS | 25.0% |
| !!! | TCCACATTTTTTTCAATGTA+TGG | + | chr6_4:29117952-29117971 | None:intergenic | 25.0% |
| !! | GAAAAAAATGTGGATGTTTT+AGG | - | chr6_4:29117958-29117977 | Msa0984460:CDS | 25.0% |
| !!! | CAAATCCATTATTTTGTGAA+GGG | + | chr6_4:29118152-29118171 | None:intergenic | 25.0% |
| ! | ATAATGTACCATTTCTCTAT+TGG | + | chr6_4:29118177-29118196 | None:intergenic | 25.0% |
| !! | TTTCTGAAGAAAAAAAATCC+CGG | - | chr6_4:29118250-29118269 | Msa0984460:CDS | 25.0% |
| !!! | TTCACGTATTTTTGAAAGAT+GGG | - | chr6_4:29118342-29118361 | Msa0984460:CDS | 25.0% |
| ! | GAAATTAAGGATATTGAAAG+AGG | - | chr6_4:29118462-29118481 | Msa0984460:CDS | 25.0% |
| ! | ACTTCATTTGATTCTTTCTT+GGG | + | chr6_4:29118498-29118517 | None:intergenic | 25.0% |
| ! | ATCAAAGATGATTTTCCATC+AGG | - | chr6_4:29115791-29115810 | Msa0984460:three_prime_UTR | 30.0% |
| ! | ATTGGTTGAGACTTGAATTT+TGG | + | chr6_4:29115845-29115864 | None:intergenic | 30.0% |
| !!! | TGATAGGTATTTTGATGCAT+TGG | - | chr6_4:29116093-29116112 | Msa0984460:three_prime_UTR | 30.0% |
| GACTTAAGAGTTTCTAATTC+TGG | + | chr6_4:29116124-29116143 | None:intergenic | 30.0% | |
| !!! | TTATTTTGGGAGTTATGTGA+AGG | + | chr6_4:29116288-29116307 | None:intergenic | 30.0% |
| !!! | TTGATGTAGGTTTTTGGTTA+CGG | + | chr6_4:29116488-29116507 | None:intergenic | 30.0% |
| ! | TAGAGATTGATGTAGGTTTT+TGG | + | chr6_4:29116494-29116513 | None:intergenic | 30.0% |
| AAAACCTACATCAATCTCTA+TGG | - | chr6_4:29116494-29116513 | Msa0984460:three_prime_UTR | 30.0% | |
| ATCTCTATGGTACATTCTTA+TGG | - | chr6_4:29116507-29116526 | Msa0984460:three_prime_UTR | 30.0% | |
| TTAAGCTCGAGACATAATAT+TGG | + | chr6_4:29116535-29116554 | None:intergenic | 30.0% | |
| !! | GTTCTTTTGATTATGGATCA+AGG | - | chr6_4:29116851-29116870 | Msa0984460:CDS | 30.0% |
| ! | TTTACAGATTTTCTCTTGCA+TGG | - | chr6_4:29117299-29117318 | Msa0984460:intron | 30.0% |
| !! | GCAACCGAATATTCTTATTT+TGG | + | chr6_4:29117688-29117707 | None:intergenic | 30.0% |
| AATAAGAATATTCGGTTGCA+AGG | - | chr6_4:29117689-29117708 | Msa0984460:CDS | 30.0% | |
| !!! | GGTTGCAAGGTTTTAAATAA+GGG | - | chr6_4:29117702-29117721 | Msa0984460:CDS | 30.0% |
| ! | TTTTTATGGTACTTTTGTGC+CGG | - | chr6_4:29117756-29117775 | Msa0984460:CDS | 30.0% |
| GTTTCTAACATTAGAACATC+TGG | + | chr6_4:29117804-29117823 | None:intergenic | 30.0% | |
| CAAAACCGTCATTTCATAAA+AGG | - | chr6_4:29117823-29117842 | Msa0984460:CDS | 30.0% | |
| ! | CTTTCCCTTTTATGAAATGA+CGG | + | chr6_4:29117831-29117850 | None:intergenic | 30.0% |
| !! | GCAAATCCATTATTTTGTGA+AGG | + | chr6_4:29118153-29118172 | None:intergenic | 30.0% |
| CAATAAAGTTGTAGTTGAGT+TGG | - | chr6_4:29118209-29118228 | Msa0984460:CDS | 30.0% | |
| GACATATAAGGTAGGTATTT+GGG | + | chr6_4:29118298-29118317 | None:intergenic | 30.0% | |
| AGACATATAAGGTAGGTATT+TGG | + | chr6_4:29118299-29118318 | None:intergenic | 30.0% | |
| AATACCTACCTTATATGTCT+TGG | - | chr6_4:29118299-29118318 | Msa0984460:CDS | 30.0% | |
| GTATTAAGCCAAGACATATA+AGG | + | chr6_4:29118310-29118329 | None:intergenic | 30.0% | |
| !! | GTTCACGTATTTTTGAAAGA+TGG | - | chr6_4:29118341-29118360 | Msa0984460:CDS | 30.0% |
| !!! | CTTTTTTGGATAGACAATCT+TGG | - | chr6_4:29118433-29118452 | Msa0984460:CDS | 30.0% |
| ATCTTGGTTTCGAGAAATTA+AGG | - | chr6_4:29118449-29118468 | Msa0984460:CDS | 30.0% | |
| CACTTCATTTGATTCTTTCT+TGG | + | chr6_4:29118499-29118518 | None:intergenic | 30.0% | |
| AGAAGCAATTTCACTAGATA+TGG | - | chr6_4:29118580-29118599 | Msa0984460:CDS | 30.0% | |
| TTGGTGTACTTCTTGTTAAA+TGG | - | chr6_4:29118656-29118675 | Msa0984460:CDS | 30.0% | |
| ACCAAGAATGTTTCCTTTAG+TGG | - | chr6_4:29115755-29115774 | Msa0984460:three_prime_UTR | 35.0% | |
| TCCACTAAAGGAAACATTCT+TGG | + | chr6_4:29115759-29115778 | None:intergenic | 35.0% | |
| !!! | TTGAATTTTGGTTGTCTTGG+AGG | + | chr6_4:29115833-29115852 | None:intergenic | 35.0% |
| !!! | GACTTGAATTTTGGTTGTCT+TGG | + | chr6_4:29115836-29115855 | None:intergenic | 35.0% |
| ! | TAAGTAACTCCTTTTGGCAT+TGG | + | chr6_4:29115863-29115882 | None:intergenic | 35.0% |
| !! | TGTTGGTAAGTAACTCCTTT+TGG | + | chr6_4:29115869-29115888 | None:intergenic | 35.0% |
| ! | GATTTGACTCGTTCAAAACA+TGG | - | chr6_4:29115960-29115979 | Msa0984460:three_prime_UTR | 35.0% |
| !! | AGACAATTATCGATTCTACG+TGG | - | chr6_4:29116001-29116020 | Msa0984460:three_prime_UTR | 35.0% |
| GCATCAAAATACCTATCAAC+AGG | + | chr6_4:29116091-29116110 | None:intergenic | 35.0% | |
| !!! | AGGTATTTTGATGCATTGGA+AGG | - | chr6_4:29116097-29116116 | Msa0984460:three_prime_UTR | 35.0% |
| GAGAATATAGACAGCGAAAA+TGG | + | chr6_4:29116350-29116369 | None:intergenic | 35.0% | |
| AAGAAGAAGTTAACACGGAT+TGG | + | chr6_4:29116418-29116437 | None:intergenic | 35.0% | |
| AAAAACAAGAGAGCTATCCA+CGG | + | chr6_4:29116445-29116464 | None:intergenic | 35.0% | |
| TGTACCATAGAGATTGATGT+AGG | + | chr6_4:29116501-29116520 | None:intergenic | 35.0% | |
| TGTCTCGAGCTTAAGATTTA+CGG | - | chr6_4:29116541-29116560 | Msa0984460:three_prime_UTR | 35.0% | |
| AGCTTAAGATTTACGGACAA+TGG | - | chr6_4:29116548-29116567 | Msa0984460:three_prime_UTR | 35.0% | |
| TCAGTTGTTGGAAACTTTGT+TGG | - | chr6_4:29116625-29116644 | Msa0984460:three_prime_UTR | 35.0% | |
| CCAACAGCAAAGAAGAAAAT+TGG | + | chr6_4:29116688-29116707 | None:intergenic | 35.0% | |
| !! | CCAATTTTCTTCTTTGCTGT+TGG | - | chr6_4:29116685-29116704 | Msa0984460:exon | 35.0% |
| TTTAATATCGCGTGGACAAT+TGG | + | chr6_4:29116987-29117006 | None:intergenic | 35.0% | |
| AATGCAATAGTTCATCGCAA+AGG | + | chr6_4:29117070-29117089 | None:intergenic | 35.0% | |
| !!! | CTGGTTTTATATGCTTCTAC+AGG | - | chr6_4:29117148-29117167 | Msa0984460:intron | 35.0% |
| ! | ACCAGTCATTGGAAAAGTAT+AGG | + | chr6_4:29117329-29117348 | None:intergenic | 35.0% |
| TAAGTCATTGTGTGTTGCAT+TGG | - | chr6_4:29117399-29117418 | Msa0984460:intron | 35.0% | |
| AATCTCAACATTCACGGTTA+TGG | - | chr6_4:29117426-29117445 | Msa0984460:intron | 35.0% | |
| TGGCAATAGCAATGTCATTA+GGG | + | chr6_4:29117501-29117520 | None:intergenic | 35.0% | |
| ATGGCAATAGCAATGTCATT+AGG | + | chr6_4:29117502-29117521 | None:intergenic | 35.0% | |
| CTATTGCCATTAGTGATAGA+AGG | - | chr6_4:29117512-29117531 | Msa0984460:CDS | 35.0% | |
| CTTTCTCCTTCTATCACTAA+TGG | + | chr6_4:29117521-29117540 | None:intergenic | 35.0% | |
| !! | TTTCAATCTCTTTGGAGTCT+TGG | + | chr6_4:29117579-29117598 | None:intergenic | 35.0% |
| GAACACTGATGATAGTAGTT+TGG | - | chr6_4:29117615-29117634 | Msa0984460:CDS | 35.0% | |
| !!! | CGGTTGCAAGGTTTTAAATA+AGG | - | chr6_4:29117701-29117720 | Msa0984460:CDS | 35.0% |
| ! | TTGTGACATTTTACCGATAC+CGG | + | chr6_4:29117778-29117797 | None:intergenic | 35.0% |
| !! | AAAAGGGAAAGCGTTTGTAT+TGG | - | chr6_4:29117840-29117859 | Msa0984460:CDS | 35.0% |
| AAAGACATCCAATCAACATG+AGG | + | chr6_4:29117919-29117938 | None:intergenic | 35.0% | |
| !!! | AATGTGGATGTTTTAGGAGA+TGG | - | chr6_4:29117964-29117983 | Msa0984460:CDS | 35.0% |
| !!! | GTTTTAGGAGATGGTAATTG+TGG | - | chr6_4:29117973-29117992 | Msa0984460:CDS | 35.0% |
| TCATAAGAGTGATTATACGC+CGG | - | chr6_4:29118080-29118099 | Msa0984460:CDS | 35.0% | |
| TGTTTCTCACTTCCAAATAC+CGG | + | chr6_4:29118102-29118121 | None:intergenic | 35.0% | |
| TTGCACCCTTCACAAAATAA+TGG | - | chr6_4:29118144-29118163 | Msa0984460:CDS | 35.0% | |
| GATTTGCACCAATAGAGAAA+TGG | - | chr6_4:29118166-29118185 | Msa0984460:CDS | 35.0% | |
| GAGTTGGCAAAACATGAAAT+CGG | - | chr6_4:29118225-29118244 | Msa0984460:CDS | 35.0% | |
| AGAAAAAAAATCCCGGTTAG+AGG | - | chr6_4:29118257-29118276 | Msa0984460:CDS | 35.0% | |
| TAAGCCAAGACATATAAGGT+AGG | + | chr6_4:29118306-29118325 | None:intergenic | 35.0% | |
| TCATTTGATTCTTTCTTGGG+TGG | + | chr6_4:29118495-29118514 | None:intergenic | 35.0% | |
| TCATCATCTTCACTATCAAG+AGG | + | chr6_4:29118531-29118550 | None:intergenic | 35.0% | |
| TCAGACATTGCAATTCCTGA+TGG | + | chr6_4:29115809-29115828 | None:intergenic | 40.0% | |
| AAGTCTCAACCAATGCCAAA+AGG | - | chr6_4:29115851-29115870 | Msa0984460:three_prime_UTR | 40.0% | |
| GGAGTTACTTACCAACAAGA+TGG | - | chr6_4:29115872-29115891 | Msa0984460:three_prime_UTR | 40.0% | |
| GAGTTTGAGAACCATCTTGT+TGG | + | chr6_4:29115886-29115905 | None:intergenic | 40.0% | |
| AGATGGTTCTCAAACTCGAA+AGG | - | chr6_4:29115889-29115908 | Msa0984460:three_prime_UTR | 40.0% | |
| ! | ACGCTACAAGAAGCTTTGAT+AGG | - | chr6_4:29116059-29116078 | Msa0984460:three_prime_UTR | 40.0% |
| ! | CGCTACAAGAAGCTTTGATA+GGG | - | chr6_4:29116060-29116079 | Msa0984460:three_prime_UTR | 40.0% |
| ! | ATAGGGCATTACCTGTTGAT+AGG | - | chr6_4:29116077-29116096 | Msa0984460:three_prime_UTR | 40.0% |
| TGCTACCTCATGACAAACAA+TGG | - | chr6_4:29116158-29116177 | Msa0984460:three_prime_UTR | 40.0% | |
| ATATACCGAACGATGAAACG+GGG | + | chr6_4:29116201-29116220 | None:intergenic | 40.0% | |
| CATATACCGAACGATGAAAC+GGG | + | chr6_4:29116202-29116221 | None:intergenic | 40.0% | |
| GCATATACCGAACGATGAAA+CGG | + | chr6_4:29116203-29116222 | None:intergenic | 40.0% | |
| TTAGCAGCCAAGCAATTCTT+TGG | - | chr6_4:29116230-29116249 | Msa0984460:three_prime_UTR | 40.0% | |
| ! | GGGTTTTCCAAAGAATTGCT+TGG | + | chr6_4:29116240-29116259 | None:intergenic | 40.0% |
| AGTTATGTGAAGGAATTCGG+TGG | + | chr6_4:29116278-29116297 | None:intergenic | 40.0% | |
| GGGAGTTATGTGAAGGAATT+CGG | + | chr6_4:29116281-29116300 | None:intergenic | 40.0% | |
| CGGAGATGTACCATAAGATT+AGG | + | chr6_4:29116312-29116331 | None:intergenic | 40.0% | |
| AATCTTATGGTACATCTCCG+CGG | - | chr6_4:29116312-29116331 | Msa0984460:three_prime_UTR | 40.0% | |
| ! | AATGGTAGCTATAAGTACCG+CGG | + | chr6_4:29116332-29116351 | None:intergenic | 40.0% |
| GAACTGCTTCGAAGTAGAAA+AGG | + | chr6_4:29116378-29116397 | None:intergenic | 40.0% | |
| !! | AGAAGTTAACACGGATTGGA+TGG | + | chr6_4:29116414-29116433 | None:intergenic | 40.0% |
| GTGCGAAGAAGAAGTTAACA+CGG | + | chr6_4:29116423-29116442 | None:intergenic | 40.0% | |
| !!! | GCTCTCTTGTTTTTAGCACT+AGG | - | chr6_4:29116451-29116470 | Msa0984460:three_prime_UTR | 40.0% |
| !!! | TGTAGGTTTTTGGTTACGGA+TGG | + | chr6_4:29116484-29116503 | None:intergenic | 40.0% |
| ATTTACGGACAATGGATGTC+CGG | - | chr6_4:29116556-29116575 | Msa0984460:three_prime_UTR | 40.0% | |
| ! | AACTTTGTTGGAGCGTTACT+TGG | - | chr6_4:29116637-29116656 | Msa0984460:three_prime_UTR | 40.0% |
| ! | TTAGGTAGTGTTGCATTGGT+TGG | + | chr6_4:29116757-29116776 | None:intergenic | 40.0% |
| CTCTTTAGGTAGTGTTGCAT+TGG | + | chr6_4:29116761-29116780 | None:intergenic | 40.0% | |
| AACACTGGATGTAGCTCTTT+AGG | + | chr6_4:29116775-29116794 | None:intergenic | 40.0% | |
| GCAACAAAGAGAAAGAACAC+TGG | + | chr6_4:29116790-29116809 | None:intergenic | 40.0% | |
| !! | TAGTGTTGCTTCAATGGCTT+GGG | - | chr6_4:29116816-29116835 | Msa0984460:CDS | 40.0% |
| CAATAGCAAGCTATTGTGGT+GGG | + | chr6_4:29117031-29117050 | None:intergenic | 40.0% | |
| !! | CACCACAATAGCTTGCTATT+GGG | - | chr6_4:29117030-29117049 | Msa0984460:CDS | 40.0% |
| ! | GATGAACTATTGCATTGACC+TGG | - | chr6_4:29117074-29117093 | Msa0984460:intron | 40.0% |
| GTCAGGATCAATTTCTTCAG+AGG | - | chr6_4:29117173-29117192 | Msa0984460:intron | 40.0% | |
| ! | ACAGATTTTCTCTTGCATGG+TGG | - | chr6_4:29117302-29117321 | Msa0984460:intron | 40.0% |
| ! | CAGATTTTCTCTTGCATGGT+GGG | - | chr6_4:29117303-29117322 | Msa0984460:intron | 40.0% |
| ! | GCCTATACTTTTCCAATGAC+TGG | - | chr6_4:29117325-29117344 | Msa0984460:intron | 40.0% |
| ! | GGCTCTAATCTCAACATTCA+CGG | - | chr6_4:29117420-29117439 | Msa0984460:intron | 40.0% |
| ! | AAGCCACATAAACACTGGTT+AGG | - | chr6_4:29117538-29117557 | Msa0984460:CDS | 40.0% |
| ! | AGCCACATAAACACTGGTTA+GGG | - | chr6_4:29117539-29117558 | Msa0984460:CDS | 40.0% |
| AACCCTAACCAGTGTTTATG+TGG | + | chr6_4:29117544-29117563 | None:intergenic | 40.0% | |
| !! | ATTTTGATCGGCATCGTTTG+AGG | + | chr6_4:29117662-29117681 | None:intergenic | 40.0% |
| GTAGCTGTACATGTTAGTGT+AGG | - | chr6_4:29118006-29118025 | Msa0984460:CDS | 40.0% | |
| AGTGATTATACGCCGGTATT+TGG | - | chr6_4:29118087-29118106 | Msa0984460:CDS | 40.0% | |
| ! | TAGGTATTTGGGTTTAGTGG+TGG | + | chr6_4:29118287-29118306 | None:intergenic | 40.0% |
| ! | AGGTAGGTATTTGGGTTTAG+TGG | + | chr6_4:29118290-29118309 | None:intergenic | 40.0% |
| GTGGAAACTACACAAGAAAG+AGG | - | chr6_4:29118391-29118410 | Msa0984460:CDS | 40.0% | |
| GACTCGTTCAAAACATGGTC+TGG | - | chr6_4:29115965-29115984 | Msa0984460:three_prime_UTR | 45.0% | |
| TCGTTCAAAACATGGTCTGG+TGG | - | chr6_4:29115968-29115987 | Msa0984460:three_prime_UTR | 45.0% | |
| TTCAAAACATGGTCTGGTGG+AGG | - | chr6_4:29115971-29115990 | Msa0984460:three_prime_UTR | 45.0% | |
| CCATCTTGTGCATTTCCACT+CGG | + | chr6_4:29116034-29116053 | None:intergenic | 45.0% | |
| AACGGCCATTGTTTGTCATG+AGG | + | chr6_4:29116166-29116185 | None:intergenic | 45.0% | |
| AACAATGGCCGTTTCTTCTC+CGG | - | chr6_4:29116173-29116192 | Msa0984460:three_prime_UTR | 45.0% | |
| TCATCGTTCGGTATATGCCT+CGG | - | chr6_4:29116205-29116224 | Msa0984460:three_prime_UTR | 45.0% | |
| ! | ATGTGAAGGAATTCGGTGGT+AGG | + | chr6_4:29116274-29116293 | None:intergenic | 45.0% |
| TCTACTTCGAAGCAGTTCGT+CGG | - | chr6_4:29116380-29116399 | Msa0984460:three_prime_UTR | 45.0% | |
| TTAACTTCTTCTTCGCACCG+TGG | - | chr6_4:29116425-29116444 | Msa0984460:three_prime_UTR | 45.0% | |
| !!! | AGGTTTTTGGTTACGGATGG+AGG | + | chr6_4:29116481-29116500 | None:intergenic | 45.0% |
| ! | GCATCGATGGGACTAATTGA+AGG | - | chr6_4:29116661-29116680 | Msa0984460:three_prime_UTR | 45.0% |
| !! | AGCTCCTAGTGTTGCTTCAA+TGG | - | chr6_4:29116810-29116829 | Msa0984460:CDS | 45.0% |
| CAAGCCATTGAAGCAACACT+AGG | + | chr6_4:29116817-29116836 | None:intergenic | 45.0% | |
| !! | CTAGTGTTGCTTCAATGGCT+TGG | - | chr6_4:29116815-29116834 | Msa0984460:CDS | 45.0% |
| ! | ATGGCTTGGGCTAAGATTCA+AGG | - | chr6_4:29116829-29116848 | Msa0984460:CDS | 45.0% |
| CCAATAGCAAGCTATTGTGG+TGG | + | chr6_4:29117032-29117051 | None:intergenic | 45.0% | |
| !! | CCACCACAATAGCTTGCTAT+TGG | - | chr6_4:29117029-29117048 | Msa0984460:CDS | 45.0% |
| GACCCAATAGCAAGCTATTG+TGG | + | chr6_4:29117035-29117054 | None:intergenic | 45.0% | |
| ! | GAACTATTGCATTGACCTGG+CGG | - | chr6_4:29117077-29117096 | Msa0984460:intron | 45.0% |
| ! | AACTATTGCATTGACCTGGC+GGG | - | chr6_4:29117078-29117097 | Msa0984460:intron | 45.0% |
| ATATGCTTCTACAGGCTGTC+AGG | - | chr6_4:29117156-29117175 | Msa0984460:intron | 45.0% | |
| GGAGAAAGCCACATAAACAC+TGG | - | chr6_4:29117533-29117552 | Msa0984460:CDS | 45.0% | |
| ! | CACTGGTTAGGGTTCAGATA+TGG | - | chr6_4:29117550-29117569 | Msa0984460:CDS | 45.0% |
| ATAAGGGTCTGCAACGATCT+AGG | - | chr6_4:29117718-29117737 | Msa0984460:CDS | 45.0% | |
| !! | TGGTACTTTTGTGCCGGTAT+CGG | - | chr6_4:29117762-29117781 | Msa0984460:CDS | 45.0% |
| GCATTAACCATAGTAGGCCT+TGG | + | chr6_4:29117888-29117907 | None:intergenic | 45.0% | |
| AGTTTCCACACTGTGCATGA+TGG | + | chr6_4:29118380-29118399 | None:intergenic | 45.0% | |
| !!! | ATATTAAATTTATTTTTTGA+GGG | - | chr6_4:29116999-29117018 | Msa0984460:CDS | 5.0% |
| CTACGTGGAAAAGAACCGAG+TGG | - | chr6_4:29116016-29116035 | Msa0984460:three_prime_UTR | 50.0% | |
| CCGAGTGGAAATGCACAAGA+TGG | - | chr6_4:29116031-29116050 | Msa0984460:three_prime_UTR | 50.0% | |
| CTACTTCGAAGCAGTTCGTC+GGG | - | chr6_4:29116381-29116400 | Msa0984460:three_prime_UTR | 50.0% | |
| AATGGATGTCCGGTGGACAA+AGG | - | chr6_4:29116566-29116585 | Msa0984460:three_prime_UTR | 50.0% | |
| !! | AGCGTTACTTGGTGCATCGA+TGG | - | chr6_4:29116648-29116667 | Msa0984460:three_prime_UTR | 50.0% |
| !! | GCGTTACTTGGTGCATCGAT+GGG | - | chr6_4:29116649-29116668 | Msa0984460:three_prime_UTR | 50.0% |
| GCAATTGCTGCACCAGTCAT+TGG | + | chr6_4:29117340-29117359 | None:intergenic | 50.0% | |
| TGATCGGCATCGTTTGAGGA+CGG | + | chr6_4:29117658-29117677 | None:intergenic | 50.0% | |
| TGGTAATCCATCGCCTACTC+CGG | - | chr6_4:29117860-29117879 | Msa0984460:CDS | 50.0% | |
| ACCATAGTAGGCCTTGGAAC+CGG | + | chr6_4:29117882-29117901 | None:intergenic | 50.0% | |
| AGTGGTGGTTGTCCTCTAAC+CGG | + | chr6_4:29118272-29118291 | None:intergenic | 50.0% | |
| TACCTCCATCATGCACAGTG+TGG | - | chr6_4:29118372-29118391 | Msa0984460:CDS | 50.0% | |
| TTCCACACTGTGCATGATGG+AGG | + | chr6_4:29118377-29118396 | None:intergenic | 50.0% | |
| ACGGGGAACCGGAGAAGAAA+CGG | + | chr6_4:29116184-29116203 | None:intergenic | 55.0% | |
| CGAACGATGAAACGGGGAAC+CGG | + | chr6_4:29116195-29116214 | None:intergenic | 55.0% | |
| CGGTTCCCCGTTTCATCGTT+CGG | - | chr6_4:29116193-29116212 | Msa0984460:three_prime_UTR | 55.0% | |
| TTGCTTGGCTGCTAACTCCG+AGG | + | chr6_4:29116225-29116244 | None:intergenic | 55.0% | |
| ! | GAATTCGGTGGTAGGCGATG+TGG | + | chr6_4:29116266-29116285 | None:intergenic | 55.0% |
| TACGGACAATGGATGTCCGG+TGG | - | chr6_4:29116559-29116578 | Msa0984460:three_prime_UTR | 55.0% | |
| TGGACAAAGGCGGCTTTCGA+AGG | - | chr6_4:29116579-29116598 | Msa0984460:three_prime_UTR | 55.0% | |
| ACAAAGGCGGCTTTCGAAGG+TGG | - | chr6_4:29116582-29116601 | Msa0984460:three_prime_UTR | 55.0% | |
| GCATCGTTTGAGGACGGTTG+TGG | + | chr6_4:29117652-29117671 | None:intergenic | 55.0% | |
| TCCGGTTCCAAGGCCTACTA+TGG | - | chr6_4:29117878-29117897 | Msa0984460:CDS | 55.0% | |
| GTGGTGGTTGTCCTCTAACC+GGG | + | chr6_4:29118271-29118290 | None:intergenic | 55.0% | |
| GGTGGTAGGCGATGTGGCTA+GGG | + | chr6_4:29116260-29116279 | None:intergenic | 60.0% | |
| GGATGTCCGGTGGACAAAGG+CGG | - | chr6_4:29116569-29116588 | Msa0984460:three_prime_UTR | 60.0% | |
| CGAAAGCCGCCTTTGTCCAC+CGG | + | chr6_4:29116578-29116597 | None:intergenic | 60.0% | |
| !!! | TTTTTTTGGTGGGGCCCGCC+AGG | + | chr6_4:29117095-29117114 | None:intergenic | 60.0% |
| CTTGGAACCGGAGTAGGCGA+TGG | + | chr6_4:29117870-29117889 | None:intergenic | 60.0% | |
| CATCGCCTACTCCGGTTCCA+AGG | - | chr6_4:29117868-29117887 | Msa0984460:CDS | 60.0% | |
| GTAGGCCTTGGAACCGGAGT+AGG | + | chr6_4:29117876-29117895 | None:intergenic | 60.0% | |
| CGGTGGTAGGCGATGTGGCT+AGG | + | chr6_4:29116261-29116280 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 29115692 | 29118688 | 29115692 | ID=Msa0984460;Name=Msa0984460 |
| chr6_4 | mRNA | 29115692 | 29118688 | 29115692 | ID=Msa0984460-mRNA-1;Parent=Msa0984460;Name=Msa0984460-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0.33|1|0|0.66|3|995|541 |
| chr6_4 | exon | 29115692 | 29117074 | 29115692 | ID=Msa0984460-mRNA-1:exon:8028;Parent=Msa0984460-mRNA-1 |
| chr6_4 | exon | 29117175 | 29117210 | 29117175 | ID=Msa0984460-mRNA-1:exon:8027;Parent=Msa0984460-mRNA-1 |
| chr6_4 | exon | 29117487 | 29118688 | 29117487 | ID=Msa0984460-mRNA-1:exon:8026;Parent=Msa0984460-mRNA-1 |
| chr6_4 | CDS | 29117487 | 29118688 | 29117487 | ID=Msa0984460-mRNA-1:cds;Parent=Msa0984460-mRNA-1 |
| chr6_4 | CDS | 29117175 | 29117210 | 29117175 | ID=Msa0984460-mRNA-1:cds;Parent=Msa0984460-mRNA-1 |
| chr6_4 | CDS | 29116687 | 29117074 | 29116687 | ID=Msa0984460-mRNA-1:cds;Parent=Msa0984460-mRNA-1 |
| chr6_4 | three_prime_UTR | 29115692 | 29116686 | 29115692 | ID=Msa0984460-mRNA-1:three_prime_utr;Parent=Msa0984460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
