AlfalfaGEDB | Msa0368620

M. sativa cultivar zhongmu-4 / Msa0368620

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF13947.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0368620	XP_003600760.1	97.306	631	16	1	1	630	1	631	0.0	1273

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0368620	sp\|Q9LZM4\|WAKLQ_ARATH	52.760	616	271	10	28	628	43	653	0.0	632

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0368620	G7J9Y7	97.306	631	16	1	1	630	1	631	0.0	1273

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0368620	-0.827339	1.651927e-54	-8.615850e-47
Msa0000610	Msa0368620	-0.851381	9.212670e-61	-8.615850e-47
Msa0000800	Msa0368620	0.849090	4.041516e-60	-8.615850e-47
Msa0001510	Msa0368620	-0.834295	3.255939e-56	-8.615850e-47
Msa0002690	Msa0368620	-0.839203	1.823583e-57	-8.615850e-47
Msa0002700	Msa0368620	-0.834287	3.270181e-56	-8.615850e-47
Msa0003340	Msa0368620	-0.836214	1.066814e-56	-8.615850e-47
Msa0004180	Msa0368620	-0.863987	1.680843e-64	-8.615850e-47
Msa0004940	Msa0368620	0.810419	1.163445e-50	-8.615850e-47
Msa0004990	Msa0368620	0.803402	3.546227e-49	-8.615850e-47

Showing 1 to 10 of 2,280 entries

Previous1 2 3 4 5…228Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0368620	MtrunA17_Chr3g0112391	97.306	631	16	1	1	630	1	631	0.0	1273
Msa0368620	MtrunA17_Chr7g0265391	49.843	636	283	16	6	624	11	627	0.0	571
Msa0368620	MtrunA17_Chr3g0125431	34.028	720	354	26	1	622	3	699	6.38e-98	316
Msa0368620	MtrunA17_Chr7g0248904	45.429	361	182	6	276	627	287	641	2.29e-96	310
Msa0368620	MtrunA17_Chr3g0125451	34.566	703	362	24	6	624	8	696	5.90e-96	310
Msa0368620	MtrunA17_Chr7g0248881	45.170	352	180	5	276	619	280	626	3.19e-94	304
Msa0368620	MtrunA17_Chr1g0158211	41.262	412	217	8	219	621	28	423	4.14e-94	298
Msa0368620	MtrunA17_Chr1g0158171	42.063	378	195	6	262	621	41	412	2.70e-92	292
Msa0368620	MtrunA17_Chr1g0158231	41.849	411	216	7	219	621	6	401	4.54e-92	292
Msa0368620	MtrunA17_Chr3g0125491	45.994	337	169	5	294	624	3	332	2.17e-91	286

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0368620	AT5G02070.1	52.760	616	271	10	28	628	43	653	0.0	632
Msa0368620	AT3G53840.1	48.518	641	306	12	1	622	1	636	0.0	573
Msa0368620	AT1G69730.1	44.205	371	191	6	262	621	356	721	1.42e-93	306
Msa0368620	AT1G79680.1	43.716	366	193	5	268	625	351	711	1.10e-91	300
Msa0368620	AT1G21230.1	45.304	362	183	7	274	628	334	687	5.71e-91	297
Msa0368620	AT1G21270.1	41.844	423	222	11	215	628	276	683	1.92e-90	296
Msa0368620	AT1G21210.1	41.920	427	221	11	215	628	277	689	2.16e-90	296
Msa0368620	AT2G23450.2	40.343	466	235	13	175	621	182	623	9.68e-90	293
Msa0368620	AT2G23450.1	40.343	466	235	13	175	621	182	623	9.68e-90	293
Msa0368620	AT1G21250.1	31.768	724	362	23	1	628	1	688	6.66e-88	289

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 183 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAACTGCACCTCCAC+CGG	0.535491	3_1:+65419791	Msa0368620:CDS
AAACACCTCTTGATCCCATT+AGG	0.491201	3_1:-65420340	None:intergenic
AACTAATGTATGTGCAAATT+TGG	0.214783	3_1:-65419610	None:intergenic
AAGAGCGATGTCTATAGTTT+CGG	0.436874	3_1:+65423029	Msa0368620:CDS
AAGTCCTTCAGCAGTATCAC+GGG	0.574574	3_1:-65422796	None:intergenic
AATAAGACAGCCATAATAGC+AGG	0.518699	3_1:+65420537	Msa0368620:CDS
AATGCTAAGGTTTCAGATTT+TGG	0.098856	3_1:+65422900	Msa0368620:CDS
AATTTATGTGCAGAGGATGG+TGG	0.704618	3_1:+65423127	Msa0368620:CDS
ACACTTATGGATCATTTAAC+AGG	0.329247	3_1:+65422563	Msa0368620:CDS
ACATCTCTATGGTAAATTGG+CGG	0.602638	3_1:-65422843	None:intergenic

Showing 1 to 10 of 183 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAATTTGGAAGATCAATGT+TGG	-	chr3_1:65419599-65419618	None:intergenic	30.0%
TGTTTCGAAAACTAATGTTC+CGG	-	chr3_1:65419813-65419832	None:intergenic	30.0%
CCAGAAGAAGAAGAAAAAAT+GGG	-	chr3_1:65420438-65420457	None:intergenic	30.0%
TCCAGAAGAAGAAGAAAAAA+TGG	-	chr3_1:65420439-65420458	None:intergenic	30.0%
TTCTGGATGTTTGACTAATT+TGG	+	chr3_1:65420452-65420471	Msa0368620:intron	30.0%
TGTTACACTTAACAAAAGGT+AGG	-	chr3_1:65420916-65420935	None:intergenic	30.0%
TCTTAAGTGTTACACTTTGT+GGG	-	chr3_1:65420940-65420959	None:intergenic	30.0%
TGGCCTATTTATGTTTGAAA+TGG	-	chr3_1:65421405-65421424	None:intergenic	30.0%
CAAACATAAATAGGCCAATA+TGG	+	chr3_1:65421408-65421427	Msa0368620:intron	30.0%
ATGTTAGTTGAGATCCATAT+TGG	-	chr3_1:65421425-65421444	None:intergenic	30.0%

Showing 1 to 10 of 263 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	65419528	65423567	65419528	ID=Msa0368620;Name=Msa0368620
chr3_1	mRNA	65419528	65423567	65419528	ID=Msa0368620-mRNA-1;Parent=Msa0368620;Name=Msa0368620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=110\|1\|1\|1\|1\|1\|4\|221\|630
chr3_1	exon	65419528	65420412	65419528	ID=Msa0368620-mRNA-1:exon:13102;Parent=Msa0368620-mRNA-1
chr3_1	exon	65420499	65420558	65420499	ID=Msa0368620-mRNA-1:exon:13103;Parent=Msa0368620-mRNA-1
chr3_1	exon	65422132	65422584	65422132	ID=Msa0368620-mRNA-1:exon:13104;Parent=Msa0368620-mRNA-1
chr3_1	exon	65422742	65423567	65422742	ID=Msa0368620-mRNA-1:exon:13105;Parent=Msa0368620-mRNA-1
chr3_1	five_prime_UTR	65419528	65419637	65419528	ID=Msa0368620-mRNA-1:five_prime_utr;Parent=Msa0368620-mRNA-1
chr3_1	CDS	65419638	65420412	65419638	ID=Msa0368620-mRNA-1:cds;Parent=Msa0368620-mRNA-1
chr3_1	CDS	65420499	65420558	65420499	ID=Msa0368620-mRNA-1:cds;Parent=Msa0368620-mRNA-1
chr3_1	CDS	65422132	65422584	65422132	ID=Msa0368620-mRNA-1:cds;Parent=Msa0368620-mRNA-1
chr3_1	CDS	65422742	65423346	65422742	ID=Msa0368620-mRNA-1:cds;Parent=Msa0368620-mRNA-1
chr3_1	three_prime_UTR	65423347	65423567	65423347	ID=Msa0368620-mRNA-1:three_prime_utr;Parent=Msa0368620-mRNA-1

Gene Sequence

>Msa0368620

ATGAAGACAACGAGCTTCCTCCTTGTAACAGCAACACTCTTCCTGCTAACATGCACCACCCACGTCTTCTCCGCCACATCATGTCCACCATGCGGCAACACCACCGTCCCTTTCCCACTCAGCACCACCCCAACCTGCGGCGACCAATCATACAAAATCAACTGCACCTCCACCGGAACATTAGTTTTCGAAACAGTCAACAACTCCTACCCAATCCAATCCATAAACCCTCAAACCCAACGCTTCGTAATACAACCAGCACCACTCATCCCTAACACATGCACCACCACAGACAAAATCCATGAAGGTATCATACTCAACAACACTCTTCCGTTCAACATCACTAGCTCCAACACCATCATGTACCTCAACTGCACACGCGACCTTCTTCGGTCTCCGCTTAACTGCTCCGCCGCAAGTGCTTGTCATGCTTACATCAACGCCACCGTGCCTACGTGTCAGTCCGGTCCGCTTTGTTGCACTTACCGAACCGGTGGATCGAGTAACTCTTACCAGATTCGTGTTAGGAGTTCTGGGTGTAGTGCTTATTCGAGTTTTGTTAACCTTGACTCCGGTCTTGCGGTGAACCGGTGGTCTAGACCGGGTTTGGAGATTCAATGGATGTCACCTAGAGAAACTGTGTGCACGTCTCAGAATGATTGTGATGCTGCCACGTCGACTTGTGGGGTTGATAGTTCATCACCTAATGGGATCAAGAGGTGTTTATGTAATGGAGATCTTGTGTGGGACCCTATTCAAGGGGTGTGTGCTAAAAAAATAACTTGTTTTAATCCAGATGGGTGTGAATCAAGTAATAAGACAGCCATAATAGCAGGTACAACATGTGGAGTTGGAGCTGCACTAATCCTAGCAGCAATTGCGTTTCTTCTCTACAAACGTCACAAACGCATATTAGAAGCACAACAACGCCTAGCCAAAGAGCGCGAAGGAATTCTAAACGCAAGTGGTGGTGGCAAAGCAGCCAAACTTTTCACCGGCAAAGAGATCAAGAAAGCCACAAATGACTTCTCAGCTGATCGCCTCCTCGGCATTGGTGGTTATGGCGAAGTCTACAAAGGCTTTCTTCCAGATGGCACCGCCATAGCCGTTAAATGTGCTAAAATTGGAAATGCAAAAGGCACTGACCAAGTCCTTAACGAAGTTCGCATTTTATGCCAAGTTAACCACAGAAACCTCGTTGGATTACTCGGTTGCTGTGTGGAATTGGAGCAGCCAATTTTGGTTTATGAGTTCATAGAAAATGGAACACTTATGGATCATTTAACAGGTCAAATGCCAAAGGGTCGTACTTCACTTAATTGGAACCATCGCCTTCACGTTGCCCGTGATACTGCTGAAGGACTTGCATACCTTCACTTCATGGCAGTGCCGCCAATTTACCATAGAGATGTTAAGTCAAGTAACATTCTTTTGGATTTCAAGATGAATGCTAAGGTTTCAGATTTTGGGTTATCACGGTTAGCTCAAACGGATATGAGTCATATCTCAACTTGTGCTCAAGGGACACTTGGATACCTTGATCCTGAGTATTATAGAAACTATCAATTGACCGATAAGAGCGATGTCTATAGTTTCGGAGTTGTGTTGCTTGAGCTTTTGACGTCTCAGAAGGCGATAGATTTCAACAGGGCTTCGGATGATGTGAATTTGGCAATTTATGTGCAGAGGATGGTGGACGAAGAGAAGTTGATTGATGTTATTGATCCTATTTTGAAAAATGGAGCTAGTAATATAGAGCTTGATACTATGAAGGCTGTGGCACTTTTGGCATTGGGTTGTTTGGAGGAGAAAAGACAGAATCGACCTTCAATGAAAGAAGTGTCAGAGGAGATTGAGTATATCATTAGTGTTGCTTCTACAAAGGCAGTGTAG

Protein sequence

>Msa0368620

MKTTSFLLVTATLFLLTCTTHVFSATSCPPCGNTTVPFPLSTTPTCGDQSYKINCTSTGTLVFETVNNSYPIQSINPQTQRFVIQPAPLIPNTCTTTDKIHEGIILNNTLPFNITSSNTIMYLNCTRDLLRSPLNCSAASACHAYINATVPTCQSGPLCCTYRTGGSSNSYQIRVRSSGCSAYSSFVNLDSGLAVNRWSRPGLEIQWMSPRETVCTSQNDCDAATSTCGVDSSSPNGIKRCLCNGDLVWDPIQGVCAKKITCFNPDGCESSNKTAIIAGTTCGVGAALILAAIAFLLYKRHKRILEAQQRLAKEREGILNASGGGKAAKLFTGKEIKKATNDFSADRLLGIGGYGEVYKGFLPDGTAIAVKCAKIGNAKGTDQVLNEVRILCQVNHRNLVGLLGCCVELEQPILVYEFIENGTLMDHLTGQMPKGRTSLNWNHRLHVARDTAEGLAYLHFMAVPPIYHRDVKSSNILLDFKMNAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNRASDDVNLAIYVQRMVDEEKLIDVIDPILKNGASNIELDTMKAVALLALGCLEEKRQNRPSMKEVSEEIEYIISVASTKAV*