AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0595240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595240 MtrunA17_Chr4g0014421 96.296 270 9 1 1 270 1 269 0.0 541
Msa0595240 MtrunA17_Chr2g0328581 50.000 62 29 1 131 192 77 136 3.84e-12 63.9
Msa0595240 MtrunA17_Chr5g0405501 37.500 88 52 2 109 195 53 138 8.49e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595240 AT4G09350.1 55.118 254 103 3 17 269 3 246 2.88e-96 283
Msa0595240 AT5G59610.2 49.231 65 31 1 127 191 71 133 3.80e-11 62.4
Msa0595240 AT5G59610.1 49.231 65 31 1 127 191 71 133 9.35e-11 61.2
Msa0595240 AT5G59610.4 49.231 65 31 1 127 191 71 133 9.35e-11 61.2
Msa0595240 AT5G59610.3 49.231 65 31 1 127 191 71 133 1.00e-10 61.2
Msa0595240 AT5G59610.5 49.231 65 31 1 127 191 71 133 1.00e-10 61.2

Find 51 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATAGTTATGGTTAGATTT+TGG 0.173221 4_2:+24207994 None:intergenic
TCTTCACCCAAAAGCTTCTT+AGG 0.196506 4_2:+24207688 None:intergenic
CTACTATTCAATCCAATCTT+AGG 0.223430 4_2:-24207922 Msa0595240:CDS
TCTTATTCTTCTTATTGTTT+TGG 0.259661 4_2:+24207894 None:intergenic
ATGTGATGCTATAGAATTAA+AGG 0.272331 4_2:-24206520 Msa0595240:three_prime_UTR
GGAGAAACCTAAGAAGCTTT+TGG 0.298843 4_2:-24207695 Msa0595240:CDS
AAGCAATCAAAGTAGCTTTC+AGG 0.300211 4_2:-24206948 Msa0595240:CDS
ATGAAAACAAGCAGATTCTT+AGG 0.302121 4_2:-24206994 Msa0595240:intron
GAAAATTGGTCTCTTATATT+CGG 0.302342 4_2:+24206389 None:intergenic
TGCATTGGTTTGTTGCTGTT+TGG 0.332246 4_2:+24207720 None:intergenic
CCAAGACGATCAACCATATC+TGG 0.335910 4_2:+24206700 None:intergenic
ATTGCTTCTACATCAGCTTC+TGG 0.336747 4_2:+24206964 None:intergenic
TTCTTCAATGCTACCTCATA+TGG 0.345848 4_2:+24206736 None:intergenic
TTATGAACCTGTTCCAGATA+TGG 0.348047 4_2:-24206713 Msa0595240:CDS
AAAATTGAAAATAAAATTAG+AGG 0.357068 4_2:-24206761 Msa0595240:CDS
GCAAGTTCATGCTTCTACTA+AGG 0.365942 4_2:-24207830 Msa0595240:CDS
AATCAATTAGAATCTGTATC+TGG 0.402865 4_2:-24206553 Msa0595240:three_prime_UTR
AAAGCAGAAGATTCTATGAT+TGG 0.410574 4_2:-24206819 Msa0595240:CDS
CTTAGGTTTCTCCTCTGCAT+TGG 0.423443 4_2:+24207705 None:intergenic
CAAACTGTAGTGAGAGTTTG+AGG 0.431351 4_2:+24207852 None:intergenic
AGAGGAAGTGAAGTTGTGTC+TGG 0.435314 4_2:+24206904 None:intergenic
GGATTGAATAGTAGAATTTG+TGG 0.442017 4_2:+24207931 None:intergenic
GTTGAAAACAGAAATCAAAT+AGG 0.456704 4_2:+24206471 None:intergenic
CAAAATATCATAACAGAACA+TGG 0.459987 4_2:-24208040 Msa0595240:exon
CGATCAACCATATCTGGAAC+AGG 0.472752 4_2:+24206706 None:intergenic
GATGATGAAGGTTGGATTGG+AGG 0.480496 4_2:-24207748 Msa0595240:CDS
AATAGTAGAATTTGTGGAGA+AGG 0.498829 4_2:+24207937 None:intergenic
AATGATGATGAAGGTTGGAT+TGG 0.510553 4_2:-24207751 Msa0595240:CDS
AAAATTAGAGGATCCATATG+AGG 0.515032 4_2:-24206749 Msa0595240:CDS
TGGATTCTTGTGTCAACTCC+AGG 0.515932 4_2:+24207781 None:intergenic
CCAGATATGGTTGATCGTCT+TGG 0.521131 4_2:-24206700 Msa0595240:CDS
GGGAGAATGATGATGAAGGT+TGG 0.524754 4_2:-24207756 Msa0595240:CDS
CTTCATCATCATTCTCCCAA+TGG 0.525735 4_2:+24207761 None:intergenic
TGGAAGAAAAGAAATAGTTA+TGG 0.532913 4_2:+24207983 None:intergenic
TGATTGGACCCTTGCTCAAG+AGG 0.534983 4_2:-24206803 Msa0595240:CDS
AGTTGACACAAGAATCCATT+GGG 0.545872 4_2:-24207776 Msa0595240:CDS
GATATGGTTGATCGTCTTGG+TGG 0.546904 4_2:-24206697 Msa0595240:CDS
GACTTGCAACCTCTTGAGCA+AGG 0.555969 4_2:+24206794 None:intergenic
AAAATATCATAACAGAACAT+GGG 0.589084 4_2:-24208039 Msa0595240:exon
GCTTCTACTAAGGACTCTCC+AGG 0.603195 4_2:-24207820 Msa0595240:CDS
CATTGGGAGAATGATGATGA+AGG 0.623650 4_2:-24207760 Msa0595240:CDS
AAATATCATAACAGAACATG+GGG 0.627032 4_2:-24208038 Msa0595240:exon
AGCTTTCAGGAAACTATCAA+AGG 0.628834 4_2:-24206935 Msa0595240:CDS
ACTTGCAACCTCTTGAGCAA+GGG 0.629898 4_2:+24206795 None:intergenic
TGCTGTTGAAGCCATGAGGG+TGG 0.630451 4_2:+24207963 None:intergenic
ATATGGTTGATCGTCTTGGT+GGG 0.630473 4_2:-24206696 Msa0595240:CDS
TGTTGCTGTTGAAGCCATGA+GGG 0.642871 4_2:+24207960 None:intergenic
GAGTTGACACAAGAATCCAT+TGG 0.644255 4_2:-24207777 Msa0595240:CDS
ACAGCAACAAACCAATGCAG+AGG 0.659212 4_2:-24207716 Msa0595240:CDS
GTGTTGCTGTTGAAGCCATG+AGG 0.677182 4_2:+24207959 None:intergenic
ATTCTTGTGTCAACTCCAGG+TGG 0.739348 4_2:+24207784 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGAAAATAAAATTAG+AGG - chr4_2:24207622-24207641 Msa0595240:intron 10.0%
!! AAAATTGAAAATAAAATTAG+AGG - chr4_2:24207622-24207641 Msa0595240:intron 10.0%
!!! TAAGAAGAATAAGATTTTTT+AGG - chr4_2:24206498-24206517 Msa0595240:three_prime_UTR 15.0%
!!! TAGTTTAAAATTGAATTTCA+AGG + chr4_2:24206852-24206871 None:intergenic 15.0%
!! GTTAAGATAAAAATATCAAA+GGG - chr4_2:24207164-24207183 Msa0595240:intron 15.0%
!!! TTATTTTCAATTTTTCTTGT+TGG + chr4_2:24207616-24207635 None:intergenic 15.0%
!! AAAAAAAAATTCATAACACT+TGG - chr4_2:24207886-24207905 Msa0595240:CDS 15.0%
!! AAAAAAAATTCATAACACTT+GGG - chr4_2:24207887-24207906 Msa0595240:CDS 15.0%
!!! TTTTAGCTATAAAAGAAAAT+TGG + chr4_2:24208011-24208030 None:intergenic 15.0%
!!! TAAGAAGAATAAGATTTTTT+AGG - chr4_2:24206498-24206517 Msa0595240:three_prime_UTR 15.0%
!!! TAGTTTAAAATTGAATTTCA+AGG + chr4_2:24206852-24206871 None:intergenic 15.0%
!! GTTAAGATAAAAATATCAAA+GGG - chr4_2:24207164-24207183 Msa0595240:intron 15.0%
!!! TTATTTTCAATTTTTCTTGT+TGG + chr4_2:24207616-24207635 None:intergenic 15.0%
!! AAAAAAAAATTCATAACACT+TGG - chr4_2:24207886-24207905 Msa0595240:CDS 15.0%
!! AAAAAAAATTCATAACACTT+GGG - chr4_2:24207887-24207906 Msa0595240:CDS 15.0%
!!! TTTTAGCTATAAAAGAAAAT+TGG + chr4_2:24208011-24208030 None:intergenic 15.0%
!! AAAATATCATAACAGAACAT+GGG - chr4_2:24206344-24206363 Msa0595240:three_prime_UTR 20.0%
!!! AAATAGTTATGGTTAGATTT+TGG + chr4_2:24206392-24206411 None:intergenic 20.0%
!!! TCTTATTCTTCTTATTGTTT+TGG + chr4_2:24206492-24206511 None:intergenic 20.0%
!! GGTTAAGATAAAAATATCAA+AGG - chr4_2:24207163-24207182 Msa0595240:intron 20.0%
!!! TAATTTCATGAATTTTTCTG+AGG + chr4_2:24207513-24207532 None:intergenic 20.0%
!! AAAAAAATTCATAACACTTG+GGG - chr4_2:24207888-24207907 Msa0595240:CDS 20.0%
!! AAAATATCATAACAGAACAT+GGG - chr4_2:24206344-24206363 Msa0595240:three_prime_UTR 20.0%
!!! AAATAGTTATGGTTAGATTT+TGG + chr4_2:24206392-24206411 None:intergenic 20.0%
!!! TCTTATTCTTCTTATTGTTT+TGG + chr4_2:24206492-24206511 None:intergenic 20.0%
!! GGTTAAGATAAAAATATCAA+AGG - chr4_2:24207163-24207182 Msa0595240:intron 20.0%
!!! TAATTTCATGAATTTTTCTG+AGG + chr4_2:24207513-24207532 None:intergenic 20.0%
!! AAAAAAATTCATAACACTTG+GGG - chr4_2:24207888-24207907 Msa0595240:CDS 20.0%
! CAAAATATCATAACAGAACA+TGG - chr4_2:24206343-24206362 Msa0595240:three_prime_UTR 25.0%
! AAATATCATAACAGAACATG+GGG - chr4_2:24206345-24206364 Msa0595240:three_prime_UTR 25.0%
! TGGAAGAAAAGAAATAGTTA+TGG + chr4_2:24206403-24206422 None:intergenic 25.0%
!! TGGTGTTTTATAGTTTTTGT+AGG + chr4_2:24206782-24206801 None:intergenic 25.0%
!! GGCAAAATTTAGTTTACAAT+CGG + chr4_2:24206831-24206850 None:intergenic 25.0%
! ACTAGAAGTTAGTATATGTT+TGG - chr4_2:24206868-24206887 Msa0595240:CDS 25.0%
!! AATTTTCACGTTGTTACAAA+AGG + chr4_2:24206958-24206977 None:intergenic 25.0%
! AATCAATTAGAATCTGTATC+TGG - chr4_2:24207830-24207849 Msa0595240:CDS 25.0%
! ATGTGATGCTATAGAATTAA+AGG - chr4_2:24207863-24207882 Msa0595240:CDS 25.0%
! GTTGAAAACAGAAATCAAAT+AGG + chr4_2:24207915-24207934 None:intergenic 25.0%
!! GAAAATTGGTCTCTTATATT+CGG + chr4_2:24207997-24208016 None:intergenic 25.0%
! CAAAATATCATAACAGAACA+TGG - chr4_2:24206343-24206362 Msa0595240:three_prime_UTR 25.0%
! AAATATCATAACAGAACATG+GGG - chr4_2:24206345-24206364 Msa0595240:three_prime_UTR 25.0%
! TGGAAGAAAAGAAATAGTTA+TGG + chr4_2:24206403-24206422 None:intergenic 25.0%
!! TGGTGTTTTATAGTTTTTGT+AGG + chr4_2:24206782-24206801 None:intergenic 25.0%
!! GGCAAAATTTAGTTTACAAT+CGG + chr4_2:24206831-24206850 None:intergenic 25.0%
! ACTAGAAGTTAGTATATGTT+TGG - chr4_2:24206868-24206887 Msa0595240:CDS 25.0%
!! AATTTTCACGTTGTTACAAA+AGG + chr4_2:24206958-24206977 None:intergenic 25.0%
! AATCAATTAGAATCTGTATC+TGG - chr4_2:24207830-24207849 Msa0595240:CDS 25.0%
! ATGTGATGCTATAGAATTAA+AGG - chr4_2:24207863-24207882 Msa0595240:CDS 25.0%
! GTTGAAAACAGAAATCAAAT+AGG + chr4_2:24207915-24207934 None:intergenic 25.0%
!! GAAAATTGGTCTCTTATATT+CGG + chr4_2:24207997-24208016 None:intergenic 25.0%
AATAGTAGAATTTGTGGAGA+AGG + chr4_2:24206449-24206468 None:intergenic 30.0%
GGATTGAATAGTAGAATTTG+TGG + chr4_2:24206455-24206474 None:intergenic 30.0%
CTACTATTCAATCCAATCTT+AGG - chr4_2:24206461-24206480 Msa0595240:three_prime_UTR 30.0%
!! GTTTTGGTATTTCCTAAGAT+TGG + chr4_2:24206476-24206495 None:intergenic 30.0%
! TAGAAAATCGAAGTGGTTTT+TGG + chr4_2:24206802-24206821 None:intergenic 30.0%
GACATAATAGAAAATCGAAG+TGG + chr4_2:24206809-24206828 None:intergenic 30.0%
!!! TGTTTGGATTAGCTTTTACA+AGG - chr4_2:24206884-24206903 Msa0595240:CDS 30.0%
TCAGCTAAAGTTGAATAGTT+TGG - chr4_2:24207039-24207058 Msa0595240:intron 30.0%
AGGCTAAAACAACTATTAGT+CGG - chr4_2:24207091-24207110 Msa0595240:intron 30.0%
! ACATAATCGGTACATGTTTT+GGG - chr4_2:24207142-24207161 Msa0595240:intron 30.0%
!! CTTTTTCATGAAACAATCTC+TGG + chr4_2:24207323-24207342 None:intergenic 30.0%
ATGAAAACAAGCAGATTCTT+AGG - chr4_2:24207389-24207408 Msa0595240:intron 30.0%
AAAGCAGAAGATTCTATGAT+TGG - chr4_2:24207564-24207583 Msa0595240:intron 30.0%
AAAATTAGAGGATCCATATG+AGG - chr4_2:24207634-24207653 Msa0595240:intron 30.0%
AATAGTAGAATTTGTGGAGA+AGG + chr4_2:24206449-24206468 None:intergenic 30.0%
GGATTGAATAGTAGAATTTG+TGG + chr4_2:24206455-24206474 None:intergenic 30.0%
CTACTATTCAATCCAATCTT+AGG - chr4_2:24206461-24206480 Msa0595240:three_prime_UTR 30.0%
!! GTTTTGGTATTTCCTAAGAT+TGG + chr4_2:24206476-24206495 None:intergenic 30.0%
! TAGAAAATCGAAGTGGTTTT+TGG + chr4_2:24206802-24206821 None:intergenic 30.0%
GACATAATAGAAAATCGAAG+TGG + chr4_2:24206809-24206828 None:intergenic 30.0%
!!! TGTTTGGATTAGCTTTTACA+AGG - chr4_2:24206884-24206903 Msa0595240:CDS 30.0%
TCAGCTAAAGTTGAATAGTT+TGG - chr4_2:24207039-24207058 Msa0595240:intron 30.0%
AGGCTAAAACAACTATTAGT+CGG - chr4_2:24207091-24207110 Msa0595240:intron 30.0%
! ACATAATCGGTACATGTTTT+GGG - chr4_2:24207142-24207161 Msa0595240:intron 30.0%
!! CTTTTTCATGAAACAATCTC+TGG + chr4_2:24207323-24207342 None:intergenic 30.0%
ATGAAAACAAGCAGATTCTT+AGG - chr4_2:24207389-24207408 Msa0595240:intron 30.0%
AAAGCAGAAGATTCTATGAT+TGG - chr4_2:24207564-24207583 Msa0595240:intron 30.0%
AAAATTAGAGGATCCATATG+AGG - chr4_2:24207634-24207653 Msa0595240:intron 30.0%
AGTTGACACAAGAATCCATT+GGG - chr4_2:24206607-24206626 Msa0595240:CDS 35.0%
! AATGATGATGAAGGTTGGAT+TGG - chr4_2:24206632-24206651 Msa0595240:CDS 35.0%
! GAGAAACCTAAGAAGCTTTT+GGG - chr4_2:24206689-24206708 Msa0595240:CDS 35.0%
!!! GCTGATTTGCTCAATTTTCA+AGG - chr4_2:24206722-24206741 Msa0595240:CDS 35.0%
! TTTCAGGATTTTCACGTCTA+CGG + chr4_2:24206923-24206942 None:intergenic 35.0%
!!! AAGGTTGCTTTTGTAGTTTC+AGG + chr4_2:24206939-24206958 None:intergenic 35.0%
AAAAACCATCGCTAAACCAA+AGG - chr4_2:24206992-24207011 Msa0595240:intron 35.0%
TACGACTTGAGTTCAATTGT+TGG - chr4_2:24207063-24207082 Msa0595240:intron 35.0%
! GAGTTCAATTGTTGGCTAAA+AGG - chr4_2:24207071-24207090 Msa0595240:intron 35.0%
ATGTCAGAGTTTGATCGAAA+AGG + chr4_2:24207126-24207145 None:intergenic 35.0%
CGATCAAACTCTGACATAAT+CGG - chr4_2:24207129-24207148 Msa0595240:intron 35.0%
! GACATAATCGGTACATGTTT+TGG - chr4_2:24207141-24207160 Msa0595240:intron 35.0%
! TGACAAGAGTTGCTGATTAA+TGG - chr4_2:24207357-24207376 Msa0595240:intron 35.0%
AAGCAATCAAAGTAGCTTTC+AGG - chr4_2:24207435-24207454 Msa0595240:intron 35.0%
AGCTTTCAGGAAACTATCAA+AGG - chr4_2:24207448-24207467 Msa0595240:intron 35.0%
!!! TTTTCTGAGGCTGTTTTTAG+AGG + chr4_2:24207500-24207519 None:intergenic 35.0%
TTCTTCAATGCTACCTCATA+TGG + chr4_2:24207650-24207669 None:intergenic 35.0%
TTATGAACCTGTTCCAGATA+TGG - chr4_2:24207670-24207689 Msa0595240:CDS 35.0%
AGTTGACACAAGAATCCATT+GGG - chr4_2:24206607-24206626 Msa0595240:CDS 35.0%
! AATGATGATGAAGGTTGGAT+TGG - chr4_2:24206632-24206651 Msa0595240:CDS 35.0%
! GAGAAACCTAAGAAGCTTTT+GGG - chr4_2:24206689-24206708 Msa0595240:CDS 35.0%
!!! GCTGATTTGCTCAATTTTCA+AGG - chr4_2:24206722-24206741 Msa0595240:CDS 35.0%
! TTTCAGGATTTTCACGTCTA+CGG + chr4_2:24206923-24206942 None:intergenic 35.0%
!!! AAGGTTGCTTTTGTAGTTTC+AGG + chr4_2:24206939-24206958 None:intergenic 35.0%
AAAAACCATCGCTAAACCAA+AGG - chr4_2:24206992-24207011 Msa0595240:intron 35.0%
TACGACTTGAGTTCAATTGT+TGG - chr4_2:24207063-24207082 Msa0595240:intron 35.0%
! GAGTTCAATTGTTGGCTAAA+AGG - chr4_2:24207071-24207090 Msa0595240:intron 35.0%
ATGTCAGAGTTTGATCGAAA+AGG + chr4_2:24207126-24207145 None:intergenic 35.0%
CGATCAAACTCTGACATAAT+CGG - chr4_2:24207129-24207148 Msa0595240:intron 35.0%
! GACATAATCGGTACATGTTT+TGG - chr4_2:24207141-24207160 Msa0595240:intron 35.0%
! TGACAAGAGTTGCTGATTAA+TGG - chr4_2:24207357-24207376 Msa0595240:intron 35.0%
AAGCAATCAAAGTAGCTTTC+AGG - chr4_2:24207435-24207454 Msa0595240:intron 35.0%
AGCTTTCAGGAAACTATCAA+AGG - chr4_2:24207448-24207467 Msa0595240:intron 35.0%
!!! TTTTCTGAGGCTGTTTTTAG+AGG + chr4_2:24207500-24207519 None:intergenic 35.0%
TTCTTCAATGCTACCTCATA+TGG + chr4_2:24207650-24207669 None:intergenic 35.0%
TTATGAACCTGTTCCAGATA+TGG - chr4_2:24207670-24207689 Msa0595240:CDS 35.0%
!!! GGTTAGATTTTGGAATGCTC+AGG + chr4_2:24206382-24206401 Msa0595230:three_prime_UTR 40.0%
! TTTCTTTTCTTCCACCCTCA+TGG - chr4_2:24206409-24206428 Msa0595240:three_prime_UTR 40.0%
CAAACTGTAGTGAGAGTTTG+AGG + chr4_2:24206534-24206553 None:intergenic 40.0%
GCAAGTTCATGCTTCTACTA+AGG - chr4_2:24206553-24206572 Msa0595240:three_prime_UTR 40.0%
GAGTTGACACAAGAATCCAT+TGG - chr4_2:24206606-24206625 Msa0595240:CDS 40.0%
CTTCATCATCATTCTCCCAA+TGG + chr4_2:24206625-24206644 None:intergenic 40.0%
! CATTGGGAGAATGATGATGA+AGG - chr4_2:24206623-24206642 Msa0595240:CDS 40.0%
!! TGCATTGGTTTGTTGCTGTT+TGG + chr4_2:24206666-24206685 None:intergenic 40.0%
! GGAGAAACCTAAGAAGCTTT+TGG - chr4_2:24206688-24206707 Msa0595240:CDS 40.0%
TCTTCACCCAAAAGCTTCTT+AGG + chr4_2:24206698-24206717 None:intergenic 40.0%
! TTCAGGATTTTCACGTCTAC+GGG + chr4_2:24206922-24206941 None:intergenic 40.0%
AGTTACACTTAGTGCTCCTT+TGG + chr4_2:24207011-24207030 None:intergenic 40.0%
ATTGCTTCTACATCAGCTTC+TGG + chr4_2:24207422-24207441 None:intergenic 40.0%
ATATGGTTGATCGTCTTGGT+GGG - chr4_2:24207687-24207706 Msa0595240:CDS 40.0%
!!! GGTTAGATTTTGGAATGCTC+AGG + chr4_2:24206382-24206401 Msa0595230:three_prime_UTR 40.0%
! TTTCTTTTCTTCCACCCTCA+TGG - chr4_2:24206409-24206428 Msa0595240:three_prime_UTR 40.0%
CAAACTGTAGTGAGAGTTTG+AGG + chr4_2:24206534-24206553 None:intergenic 40.0%
GCAAGTTCATGCTTCTACTA+AGG - chr4_2:24206553-24206572 Msa0595240:three_prime_UTR 40.0%
GAGTTGACACAAGAATCCAT+TGG - chr4_2:24206606-24206625 Msa0595240:CDS 40.0%
CTTCATCATCATTCTCCCAA+TGG + chr4_2:24206625-24206644 None:intergenic 40.0%
! CATTGGGAGAATGATGATGA+AGG - chr4_2:24206623-24206642 Msa0595240:CDS 40.0%
!! TGCATTGGTTTGTTGCTGTT+TGG + chr4_2:24206666-24206685 None:intergenic 40.0%
! GGAGAAACCTAAGAAGCTTT+TGG - chr4_2:24206688-24206707 Msa0595240:CDS 40.0%
TCTTCACCCAAAAGCTTCTT+AGG + chr4_2:24206698-24206717 None:intergenic 40.0%
! TTCAGGATTTTCACGTCTAC+GGG + chr4_2:24206922-24206941 None:intergenic 40.0%
AGTTACACTTAGTGCTCCTT+TGG + chr4_2:24207011-24207030 None:intergenic 40.0%
ATTGCTTCTACATCAGCTTC+TGG + chr4_2:24207422-24207441 None:intergenic 40.0%
ATATGGTTGATCGTCTTGGT+GGG - chr4_2:24207687-24207706 Msa0595240:CDS 40.0%
! TGTTGCTGTTGAAGCCATGA+GGG + chr4_2:24206426-24206445 None:intergenic 45.0%
!! AACTCCAGGTGGTGCTTTTT+GGG + chr4_2:24206591-24206610 None:intergenic 45.0%
ATTCTTGTGTCAACTCCAGG+TGG + chr4_2:24206602-24206621 None:intergenic 45.0%
TGGATTCTTGTGTCAACTCC+AGG + chr4_2:24206605-24206624 None:intergenic 45.0%
! GGGAGAATGATGATGAAGGT+TGG - chr4_2:24206627-24206646 Msa0595240:CDS 45.0%
! GATGATGAAGGTTGGATTGG+AGG - chr4_2:24206635-24206654 Msa0595240:CDS 45.0%
ACAGCAACAAACCAATGCAG+AGG - chr4_2:24206667-24206686 Msa0595240:CDS 45.0%
CTTAGGTTTCTCCTCTGCAT+TGG + chr4_2:24206681-24206700 None:intergenic 45.0%
AGAGGAAGTGAAGTTGTGTC+TGG + chr4_2:24207482-24207501 None:intergenic 45.0%
ACTTGCAACCTCTTGAGCAA+GGG + chr4_2:24207591-24207610 None:intergenic 45.0%
! CGATCAACCATATCTGGAAC+AGG + chr4_2:24207680-24207699 None:intergenic 45.0%
CCAAGACGATCAACCATATC+TGG + chr4_2:24207686-24207705 None:intergenic 45.0%
CCAGATATGGTTGATCGTCT+TGG - chr4_2:24207683-24207702 Msa0595240:CDS 45.0%
GATATGGTTGATCGTCTTGG+TGG - chr4_2:24207686-24207705 Msa0595240:CDS 45.0%
! TGTTGCTGTTGAAGCCATGA+GGG + chr4_2:24206426-24206445 None:intergenic 45.0%
!! AACTCCAGGTGGTGCTTTTT+GGG + chr4_2:24206591-24206610 None:intergenic 45.0%
ATTCTTGTGTCAACTCCAGG+TGG + chr4_2:24206602-24206621 None:intergenic 45.0%
TGGATTCTTGTGTCAACTCC+AGG + chr4_2:24206605-24206624 None:intergenic 45.0%
! GGGAGAATGATGATGAAGGT+TGG - chr4_2:24206627-24206646 Msa0595240:CDS 45.0%
! GATGATGAAGGTTGGATTGG+AGG - chr4_2:24206635-24206654 Msa0595240:CDS 45.0%
ACAGCAACAAACCAATGCAG+AGG - chr4_2:24206667-24206686 Msa0595240:CDS 45.0%
CTTAGGTTTCTCCTCTGCAT+TGG + chr4_2:24206681-24206700 None:intergenic 45.0%
AGAGGAAGTGAAGTTGTGTC+TGG + chr4_2:24207482-24207501 None:intergenic 45.0%
ACTTGCAACCTCTTGAGCAA+GGG + chr4_2:24207591-24207610 None:intergenic 45.0%
! CGATCAACCATATCTGGAAC+AGG + chr4_2:24207680-24207699 None:intergenic 45.0%
CCAAGACGATCAACCATATC+TGG + chr4_2:24207686-24207705 None:intergenic 45.0%
CCAGATATGGTTGATCGTCT+TGG - chr4_2:24207683-24207702 Msa0595240:CDS 45.0%
GATATGGTTGATCGTCTTGG+TGG - chr4_2:24207686-24207705 Msa0595240:CDS 45.0%
! GTGTTGCTGTTGAAGCCATG+AGG + chr4_2:24206427-24206446 None:intergenic 50.0%
GCTTCTACTAAGGACTCTCC+AGG - chr4_2:24206563-24206582 Msa0595240:three_prime_UTR 50.0%
!! ACTCCAGGTGGTGCTTTTTG+GGG + chr4_2:24206590-24206609 None:intergenic 50.0%
! CAACTCCAGGTGGTGCTTTT+TGG + chr4_2:24206592-24206611 None:intergenic 50.0%
! GTGCTCCTTTGGTTTAGCGA+TGG + chr4_2:24207000-24207019 None:intergenic 50.0%
TGATTGGACCCTTGCTCAAG+AGG - chr4_2:24207580-24207599 Msa0595240:intron 50.0%
GACTTGCAACCTCTTGAGCA+AGG + chr4_2:24207592-24207611 None:intergenic 50.0%
! GTGTTGCTGTTGAAGCCATG+AGG + chr4_2:24206427-24206446 None:intergenic 50.0%
GCTTCTACTAAGGACTCTCC+AGG - chr4_2:24206563-24206582 Msa0595240:three_prime_UTR 50.0%
!! ACTCCAGGTGGTGCTTTTTG+GGG + chr4_2:24206590-24206609 None:intergenic 50.0%
! CAACTCCAGGTGGTGCTTTT+TGG + chr4_2:24206592-24206611 None:intergenic 50.0%
! GTGCTCCTTTGGTTTAGCGA+TGG + chr4_2:24207000-24207019 None:intergenic 50.0%
TGATTGGACCCTTGCTCAAG+AGG - chr4_2:24207580-24207599 Msa0595240:intron 50.0%
GACTTGCAACCTCTTGAGCA+AGG + chr4_2:24207592-24207611 None:intergenic 50.0%
TGCTGTTGAAGCCATGAGGG+TGG + chr4_2:24206423-24206442 None:intergenic 55.0%
TGCTGTTGAAGCCATGAGGG+TGG + chr4_2:24206423-24206442 None:intergenic 55.0%
!!! GGTGGTGCTTTTTGGGGTCC+TGG + chr4_2:24206584-24206603 None:intergenic 60.0%
!! GGACCCCAAAAAGCACCACC+TGG - chr4_2:24206584-24206603 Msa0595240:exon 60.0%
!!! GGTGGTGCTTTTTGGGGTCC+TGG + chr4_2:24206584-24206603 None:intergenic 60.0%
!! GGACCCCAAAAAGCACCACC+TGG - chr4_2:24206584-24206603 Msa0595240:exon 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 24206342 24208063 24206342 ID=Msa0595240;Name=Msa0595240
chr4_2 mRNA 24206342 24208063 24206342 ID=Msa0595240-mRNA-1;Parent=Msa0595240;Name=Msa0595240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=20|1|1|1|1|1|2|243|270
chr4_2 exon 24206342 24207002 24206342 ID=Msa0595240-mRNA-1:exon:6550;Parent=Msa0595240-mRNA-1
chr4_2 exon 24207649 24208063 24207649 ID=Msa0595240-mRNA-1:exon:6549;Parent=Msa0595240-mRNA-1
chr4_2 five_prime_UTR 24208044 24208063 24208044 ID=Msa0595240-mRNA-1:five_prime_utr;Parent=Msa0595240-mRNA-1
chr4_2 CDS 24207649 24208043 24207649 ID=Msa0595240-mRNA-1:cds;Parent=Msa0595240-mRNA-1
chr4_2 CDS 24206585 24207002 24206585 ID=Msa0595240-mRNA-1:cds;Parent=Msa0595240-mRNA-1
chr4_2 three_prime_UTR 24206342 24206584 24206342 ID=Msa0595240-mRNA-1:three_prime_utr;Parent=Msa0595240-mRNA-1
Gene Sequence

>Msa0595240

ATGGGGCATGTATTGAACCTGAGCATTCCAAAATCTAACCATAACTATTTCTTTTCTTCCACCCTCATGGCTTCAACAGCAACACCTTCTCCACAAATTCTACTATTCAATCCAATCTTAGGAAATACCAAAACAATAAGAAGAATAAGATTTTTTAGGATAACAACAACCTCAAACTCTCACTACAGTTTGCAAGTTCATGCTTCTACTAAGGACTCTCCAGGACCCCAAAAAGCACCACCTGGAGTTGACACAAGAATCCATTGGGAGAATGATGATGAAGGTTGGATTGGAGGTAGCACCAAACAGCAACAAACCAATGCAGAGGAGAAACCTAAGAAGCTTTTGGGTGAAGATTTTGCTGATTTGCTCAATTTTCAAGGTTCTCATTATGAATTCTTAGGAATATCACCAGAAGCTGATGTAGAAGCAATCAAAGTAGCTTTCAGGAAACTATCAAAGGAGTATCATCCAGACACAACTTCACTTCCTCTAAAAACAGCCTCAGAAAAATTCATGAAATTAAAAGAAGTTTACACTGTTCTGAGCAATGAAGAAAGCAGAAGATTCTATGATTGGACCCTTGCTCAAGAGGTTGCAAGTCGCCAACAAGAAAAATTGAAAATAAAATTAGAGGATCCATATGAGGTAGCATTGAAGAATTATGAACCTGTTCCAGATATGGTTGATCGTCTTGGTGGGAAGAATATGAAGCTTAGTGATCAAGCTGTTTCAGCTATTACTATTGATATTTTTATCATTATTTTTGCTATATGTTGTATCACTTATGTAGTTTTCTTTAAAGAATACTGA

Protein sequence

>Msa0595240

MGHVLNLSIPKSNHNYFFSSTLMASTATPSPQILLFNPILGNTKTIRRIRFFRITTTSNSHYSLQVHASTKDSPGPQKAPPGVDTRIHWENDDEGWIGGSTKQQQTNAEEKPKKLLGEDFADLLNFQGSHYEFLGISPEADVEAIKVAFRKLSKEYHPDTTSLPLKTASEKFMKLKEVYTVLSNEESRRFYDWTLAQEVASRQQEKLKIKLEDPYEVALKNYEPVPDMVDRLGGKNMKLSDQAVSAITIDIFIIIFAICCITYVVFFKEY*