AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0741170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741170 MtrunA17_Chr5g0442131 98.254 401 7 0 1 401 1 401 0.0 816
Msa0741170 MtrunA17_Chr3g0095111 82.045 401 72 0 1 401 1 401 0.0 693
Msa0741170 MtrunA17_Chr5g0445301 91.176 170 14 1 233 401 7 176 2.12e-109 318
Msa0741170 MtrunA17_Chr5g0428161 92.593 135 3 1 152 286 2 129 6.41e-85 254
Msa0741170 MtrunA17_Chr5g0428171 92.063 63 5 0 28 90 1 63 2.78e-32 116
Msa0741170 MtrunA17_Chr5g0445291 92.500 40 3 0 81 120 1 40 9.15e-21 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741170 AT2G13360.3 80.299 401 79 0 1 401 1 401 0.0 684
Msa0741170 AT2G13360.1 80.299 401 79 0 1 401 1 401 0.0 684
Msa0741170 AT2G13360.2 80.299 401 79 0 1 401 1 401 0.0 684

Find 107 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATACAAATTGCCTTTA+TGG 0.084246 5_1:-60663082 None:intergenic
GCTACAACTTGGGAACTTAT+TGG 0.227479 5_1:+60663857 Msa0741170:CDS
TTCAGTTGCTCTATGGTCTA+AGG 0.263982 5_1:+60663896 Msa0741170:CDS
CACTTAGATCTTTCTTTGAT+TGG 0.276960 5_1:+60663818 Msa0741170:CDS
AATAGTTTACCTCATTTAGA+TGG 0.313917 5_1:-60664387 None:intergenic
CACTATACCACTCCTCCTTT+TGG 0.318503 5_1:-60664225 None:intergenic
CAAATTCTTGAAGGGATTAG+AGG 0.332922 5_1:-60664841 None:intergenic
CCTTCCATTCAGTTGCTCTA+TGG 0.334757 5_1:+60663889 Msa0741170:CDS
TTCGAAGCTTCAATGGCTTT+AGG 0.337016 5_1:-60663784 None:intergenic
TTTGTCAATGCTGTTATTGC+TGG 0.351983 5_1:-60662433 None:intergenic
TCGGACAATTCAGCTTGCTT+TGG 0.363589 5_1:+60662947 Msa0741170:CDS
AGAAACCATCTCTTTGTTCC+TGG 0.371920 5_1:+60662346 Msa0741170:CDS
TATGAATTACCTGGTTGCTT+TGG 0.381163 5_1:-60663983 None:intergenic
CCAGTTGTGGGGATGAGAAA+TGG 0.387252 5_1:-60662505 None:intergenic
AGAAAGAGCTTTCTGAGAAC+TGG 0.405377 5_1:-60663728 None:intergenic
TGATTTCCGCATGGATGAAT+GGG 0.408622 5_1:+60663687 Msa0741170:CDS
ATTGCACGAATAACATGTTC+AGG 0.410447 5_1:-60662382 None:intergenic
CTTTCTCTTCCTACTGGAAT+GGG 0.414514 5_1:+60663745 Msa0741170:CDS
TTGATTTCCGCATGGATGAA+TGG 0.416031 5_1:+60663686 Msa0741170:CDS
ACAAAGAGATGGTTTCTTCC+AGG 0.418053 5_1:-60662340 None:intergenic
ACAGTGGTGAAATAGTTAGA+AGG 0.436540 5_1:+60664284 Msa0741170:CDS
ACTCCACTCCCAAGCTTGAC+CGG 0.438490 5_1:-60664784 None:intergenic
AAGAGATACAATTTAAGCTT+AGG 0.441477 5_1:+60664313 Msa0741170:CDS
AAAGCTCTTTCTCTTCCTAC+TGG 0.444514 5_1:+60663739 Msa0741170:CDS
AGATAAAACGCATACCATAA+AGG 0.445325 5_1:+60663068 Msa0741170:CDS
GGTGGATTGAACAAAGTTGC+TGG 0.446782 5_1:+60664337 Msa0741170:CDS
CATGTGACTCAAATTCTTGA+AGG 0.450632 5_1:-60664850 None:intergenic
TTGTTTCAGGTACCGGTGCA+TGG 0.452534 5_1:+60662869 Msa0741170:intron
TTTGGGATGTCTTGCTGGTG+TGG 0.453468 5_1:+60664735 Msa0741170:CDS
TGCAGATTTCGAAGCTTCAA+TGG 0.453912 5_1:-60663791 None:intergenic
AACTGAATGGAAGGAGTGTA+TGG 0.455927 5_1:-60663880 None:intergenic
TGATGCTCTAGAATCAAAAC+TGG 0.458787 5_1:+60663041 Msa0741170:CDS
GTGGGTTACCCGGTCAAGCT+TGG 0.461906 5_1:+60664775 Msa0741170:CDS
CCATTTCTCATCCCCACAAC+TGG 0.462759 5_1:+60662505 Msa0741170:CDS
GTTGATGCGGTGTCTTCAAT+CGG 0.463044 5_1:+60663658 Msa0741170:CDS
TGGGTTACCCGGTCAAGCTT+GGG 0.469568 5_1:+60664776 Msa0741170:CDS
AGATCTTTCTTTGATTGGAA+TGG 0.470224 5_1:+60663823 Msa0741170:CDS
GTTCACAACGAGACAACAAC+AGG 0.474091 5_1:+60663102 Msa0741170:CDS
TCTTTCTCTTCCTACTGGAA+TGG 0.479245 5_1:+60663744 Msa0741170:CDS
CAGTTGTGGGGATGAGAAAT+GGG 0.482700 5_1:-60662504 None:intergenic
GTGAAATAGTTAGAAGGGCA+TGG 0.490345 5_1:+60664290 Msa0741170:CDS
ATTTCACCACTGTCAATGTT+GGG 0.491440 5_1:-60664274 None:intergenic
TACCCGGTCAAGCTTGGGAG+TGG 0.492373 5_1:+60664781 Msa0741170:CDS
GCATCAACAATAATGAGTGC+TGG 0.492711 5_1:-60663643 None:intergenic
TACTTGAAATGCTACAACTT+GGG 0.493378 5_1:+60663847 Msa0741170:CDS
TTGACAAATACTTTGTCTCC+CGG 0.495186 5_1:+60662901 Msa0741170:CDS
TCTAAGGGCAGCCCTTGACT+TGG 0.497508 5_1:+60663912 Msa0741170:CDS
AAAAGATACAGTACGATCCC+CGG 0.500419 5_1:-60662920 None:intergenic
TATTTCACCACTGTCAATGT+TGG 0.500600 5_1:-60664275 None:intergenic
TTGATGTTGTAGAAAGTGAA+TGG 0.508510 5_1:+60663001 Msa0741170:CDS
ATTGAAGAATTGTTGCCAAA+AGG 0.516010 5_1:+60664210 Msa0741170:CDS
TGACAAATACTTTGTCTCCC+GGG 0.516801 5_1:+60662902 Msa0741170:CDS
TACAATTTAAGCTTAGGAGG+TGG 0.519619 5_1:+60664319 Msa0741170:CDS
CAATTATACAATACCAGTTG+TGG 0.523225 5_1:-60662518 None:intergenic
TCAGGGATGTTGGTAGGTCC+AGG 0.525986 5_1:-60662364 None:intergenic
TTACTTGAAATGCTACAACT+TGG 0.530532 5_1:+60663846 Msa0741170:CDS
AATTATACAATACCAGTTGT+GGG 0.531739 5_1:-60662517 None:intergenic
TGTTTCAGGTACCGGTGCAT+GGG 0.532953 5_1:+60662870 Msa0741170:intron
ACTCAAAGATGTGGGTTACC+CGG 0.533616 5_1:+60664765 Msa0741170:CDS
ATGTGACTCAAATTCTTGAA+GGG 0.533659 5_1:-60664849 None:intergenic
TGATGTTGTAGAAAGTGAAT+GGG 0.540744 5_1:+60663002 Msa0741170:CDS
TCAGTTGCTCTATGGTCTAA+GGG 0.543879 5_1:+60663897 Msa0741170:CDS
CTCCACTCCCAAGCTTGACC+GGG 0.546675 5_1:-60664783 None:intergenic
TAGACCATAGAGCAACTGAA+TGG 0.550731 5_1:-60663893 None:intergenic
TGTAGAAAGTGAATGGGGCC+AGG 0.551786 5_1:+60663008 Msa0741170:CDS
AGATACAATTTAAGCTTAGG+AGG 0.552221 5_1:+60664316 Msa0741170:CDS
TTGCACGAATAACATGTTCA+GGG 0.553105 5_1:-60662381 None:intergenic
TATATGTAGGCTTGCAGTAG+AGG 0.553754 5_1:+60664180 Msa0741170:intron
AATAACATGTTCAGGGATGT+TGG 0.562695 5_1:-60662374 None:intergenic
CCATAGAGCAACTGAATGGA+AGG 0.563284 5_1:-60663889 None:intergenic
CAATAATGAGTGCTGGGTGC+TGG 0.567172 5_1:-60663636 None:intergenic
GAAGAATTGTTGCCAAAAGG+AGG 0.568226 5_1:+60664213 Msa0741170:CDS
TAGGCTTGCAGTAGAGGCGT+GGG 0.570571 5_1:+60664186 Msa0741170:intron
ACTAAAGTGAGAAAACTCCT+TGG 0.581027 5_1:+60663141 Msa0741170:CDS
CATCAACAATAATGAGTGCT+GGG 0.584013 5_1:-60663642 None:intergenic
CAGTGGTGAAATAGTTAGAA+GGG 0.585034 5_1:+60664285 Msa0741170:CDS
GAGCATCAAGATCAGCACCC+TGG 0.596981 5_1:-60663026 None:intergenic
AAAGATACAGTACGATCCCC+GGG 0.598348 5_1:-60662919 None:intergenic
GTGGATTGAACAAAGTTGCT+GGG 0.598591 5_1:+60664338 Msa0741170:CDS
AGCACTCATTATTGTTGATG+CGG 0.602112 5_1:+60663645 Msa0741170:CDS
CGGAGCTCTTGATTTCCGCA+TGG 0.603311 5_1:+60663678 Msa0741170:CDS
AGCGTTTAGCCAAAGCAACC+AGG 0.604651 5_1:+60663974 Msa0741170:CDS
ACATGTTCAGGGATGTTGGT+AGG 0.606345 5_1:-60662370 None:intergenic
GACAAATACTTTGTCTCCCG+GGG 0.610271 5_1:+60662903 Msa0741170:CDS
CAATGCACTCTCCCATGCAC+CGG 0.610924 5_1:-60662881 None:intergenic
GGTCAAGCTTGGGAGTGGAG+TGG 0.613102 5_1:+60664786 Msa0741170:CDS
ACATGTTGGCCATCTAAATG+AGG 0.619704 5_1:+60664378 Msa0741170:CDS
CAACATCAACCTTAAAGTTG+AGG 0.623731 5_1:-60662987 None:intergenic
CATACAATTCCCATTCCAGT+AGG 0.632224 5_1:-60663754 None:intergenic
TAGGTCCAGGAACAAAGAGA+TGG 0.632427 5_1:-60662351 None:intergenic
TCACCACTGTCAATGTTGGG+AGG 0.637245 5_1:-60664271 None:intergenic
ATTGTTGCCAAAAGGAGGAG+TGG 0.641815 5_1:+60664218 Msa0741170:CDS
GGAGATGACACTCAAAGATG+TGG 0.643188 5_1:+60664756 Msa0741170:CDS
GTAGGCTTGCAGTAGAGGCG+TGG 0.645225 5_1:+60664185 Msa0741170:intron
GGAATGGGAATTGTATGTGC+AGG 0.648178 5_1:+60663760 Msa0741170:CDS
AACAACAATAGCAGTCACAC+TGG 0.660740 5_1:-60664248 None:intergenic
GTAGAAAGTGAATGGGGCCA+GGG 0.661044 5_1:+60663009 Msa0741170:CDS
GGATGAATGGGGTGTAGACG+TGG 0.667971 5_1:+60663699 Msa0741170:CDS
ATTATACAATACCAGTTGTG+GGG 0.675615 5_1:-60662516 None:intergenic
TTCACAACGAGACAACAACA+GGG 0.676619 5_1:+60663103 Msa0741170:CDS
GATTTCCGCATGGATGAATG+GGG 0.690927 5_1:+60663688 Msa0741170:CDS
AGGCTTGCAGTAGAGGCGTG+GGG 0.694372 5_1:+60664187 Msa0741170:intron
GTTCCTCCCAACATTGACAG+TGG 0.707114 5_1:+60664268 Msa0741170:CDS
GAGATGACACTCAAAGATGT+GGG 0.710270 5_1:+60664757 Msa0741170:CDS
GATGTTGTAGAAAGTGAATG+GGG 0.730361 5_1:+60663003 Msa0741170:CDS
CTACACCCCATTCATCCATG+CGG 0.753299 5_1:-60663693 None:intergenic
TCACAACGAGACAACAACAG+GGG 0.780788 5_1:+60663104 Msa0741170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAACCTTTTTTTATTTTT+TGG + chr5_1:60664464-60664483 Msa0741170:intron 15.0%
!! AAAAGCCAAAAAATAAAAAA+AGG - chr5_1:60664472-60664491 None:intergenic 15.0%
!!! TTTTCAATTTCAATCTTAGT+AGG - chr5_1:60662691-60662710 None:intergenic 20.0%
!! AATAACAAACATAGTTAGAA+GGG - chr5_1:60663174-60663193 None:intergenic 20.0%
!! TGAAAGATATTTGAATTTGT+TGG + chr5_1:60663253-60663272 Msa0741170:intron 20.0%
!! AAGTAAAAAAACATAACGTT+AGG - chr5_1:60663607-60663626 None:intergenic 20.0%
!!! GATTTGAAAATGTGATTTTA+AGG + chr5_1:60663947-60663966 Msa0741170:CDS 20.0%
!!! AAAATTTTCAAGACTACTTC+TGG + chr5_1:60662478-60662497 Msa0741170:CDS 25.0%
! AATTATACAATACCAGTTGT+GGG - chr5_1:60662520-60662539 None:intergenic 25.0%
! ATAGAACATTCTAATGACTA+AGG - chr5_1:60662621-60662640 None:intergenic 25.0%
!! TCTTTTACCTTTTTACATTG+AGG + chr5_1:60662652-60662671 Msa0741170:intron 25.0%
! TTTAAGTCCTCAATGTAAAA+AGG - chr5_1:60662662-60662681 None:intergenic 25.0%
! TAACTTAAATTATAAGCGCA+GGG - chr5_1:60662838-60662857 None:intergenic 25.0%
! ATAACTTAAATTATAAGCGC+AGG - chr5_1:60662839-60662858 None:intergenic 25.0%
! AACAATACAAATTGCCTTTA+TGG - chr5_1:60663085-60663104 None:intergenic 25.0%
! GAATAACAAACATAGTTAGA+AGG - chr5_1:60663175-60663194 None:intergenic 25.0%
! ATCACAATACATGGAAAATT+TGG - chr5_1:60663316-60663335 None:intergenic 25.0%
! ACTAAAGATGCTATATATGT+AGG - chr5_1:60663441-60663460 None:intergenic 25.0%
! AAACCAAATTATGAATTACC+TGG - chr5_1:60663995-60664014 None:intergenic 25.0%
! AGAACTAGACATCTAAATTA+TGG - chr5_1:60664037-60664056 None:intergenic 25.0%
! ACATATAGCATATAAGACAT+AGG - chr5_1:60664167-60664186 None:intergenic 25.0%
! ATGTCTTATATGCTATATGT+AGG + chr5_1:60664167-60664186 Msa0741170:intron 25.0%
! AAGAGATACAATTTAAGCTT+AGG + chr5_1:60664313-60664332 Msa0741170:CDS 25.0%
! AATAGTTTACCTCATTTAGA+TGG - chr5_1:60664390-60664409 None:intergenic 25.0%
! TCAATCATCTAATAGCATAT+AGG + chr5_1:60664520-60664539 Msa0741170:intron 25.0%
!!! ATATTTTTAGCTGCAACTTT+TGG + chr5_1:60664717-60664736 Msa0741170:intron 25.0%
!!! TATTTTTAGCTGCAACTTTT+GGG + chr5_1:60664718-60664737 Msa0741170:intron 25.0%
ATTATACAATACCAGTTGTG+GGG - chr5_1:60662519-60662538 None:intergenic 30.0%
CAATTATACAATACCAGTTG+TGG - chr5_1:60662521-60662540 None:intergenic 30.0%
CACAACTGGTATTGTATAAT+TGG + chr5_1:60662519-60662538 Msa0741170:intron 30.0%
TCAATAGAAATTGTTCGAGA+CGG - chr5_1:60662731-60662750 None:intergenic 30.0%
TATGATCCTTCATTTGTTTC+AGG + chr5_1:60662856-60662875 Msa0741170:intron 30.0%
! CGTACTGTATCTTTTCTAAT+CGG + chr5_1:60662928-60662947 Msa0741170:CDS 30.0%
TTGATGTTGTAGAAAGTGAA+TGG + chr5_1:60663001-60663020 Msa0741170:CDS 30.0%
TGATGTTGTAGAAAGTGAAT+GGG + chr5_1:60663002-60663021 Msa0741170:CDS 30.0%
AGATAAAACGCATACCATAA+AGG + chr5_1:60663068-60663087 Msa0741170:CDS 30.0%
CAACAAGATATCACAATACA+TGG - chr5_1:60663325-60663344 None:intergenic 30.0%
TTGTGATATCTTGTTGATCA+AGG + chr5_1:60663329-60663348 Msa0741170:intron 30.0%
! CAACAAGGTATCACAAATTT+AGG - chr5_1:60663399-60663418 None:intergenic 30.0%
GCATCTTTAGTCATATATTC+CGG + chr5_1:60663450-60663469 Msa0741170:intron 30.0%
CATCTTTAGTCATATATTCC+GGG + chr5_1:60663451-60663470 Msa0741170:intron 30.0%
CAAGTCAAACAAATGTAATG+AGG - chr5_1:60663477-60663496 None:intergenic 30.0%
CACTTAGATCTTTCTTTGAT+TGG + chr5_1:60663818-60663837 Msa0741170:CDS 30.0%
AGATCTTTCTTTGATTGGAA+TGG + chr5_1:60663823-60663842 Msa0741170:CDS 30.0%
TTACTTGAAATGCTACAACT+TGG + chr5_1:60663846-60663865 Msa0741170:CDS 30.0%
TACTTGAAATGCTACAACTT+GGG + chr5_1:60663847-60663866 Msa0741170:CDS 30.0%
CAACCAGGTAATTCATAATT+TGG + chr5_1:60663989-60664008 Msa0741170:intron 30.0%
ATTGAAGAATTGTTGCCAAA+AGG + chr5_1:60664210-60664229 Msa0741170:CDS 30.0%
AGATACAATTTAAGCTTAGG+AGG + chr5_1:60664316-60664335 Msa0741170:CDS 30.0%
! ATTTTCAGAATAGGACATGT+TGG + chr5_1:60664364-60664383 Msa0741170:CDS 30.0%
CAATATGTGACAATGATGAA+TGG - chr5_1:60664427-60664446 None:intergenic 30.0%
ATGTGACTCAAATTCTTGAA+GGG - chr5_1:60664852-60664871 None:intergenic 30.0%
AATAACATGTTCAGGGATGT+TGG - chr5_1:60662377-60662396 None:intergenic 35.0%
TTGCACGAATAACATGTTCA+GGG - chr5_1:60662384-60662403 None:intergenic 35.0%
ATTGCACGAATAACATGTTC+AGG - chr5_1:60662385-60662404 None:intergenic 35.0%
TTTGTCAATGCTGTTATTGC+TGG - chr5_1:60662436-60662455 None:intergenic 35.0%
CAATAGAAATTGTTCGAGAC+GGG - chr5_1:60662730-60662749 None:intergenic 35.0%
TTGACAAATACTTTGTCTCC+CGG + chr5_1:60662901-60662920 Msa0741170:CDS 35.0%
ACAAAAACGCCTCAACTTTA+AGG + chr5_1:60662978-60662997 Msa0741170:CDS 35.0%
CAACATCAACCTTAAAGTTG+AGG - chr5_1:60662990-60663009 None:intergenic 35.0%
GATGTTGTAGAAAGTGAATG+GGG + chr5_1:60663003-60663022 Msa0741170:CDS 35.0%
!! TGATGCTCTAGAATCAAAAC+TGG + chr5_1:60663041-60663060 Msa0741170:CDS 35.0%
ACTAAAGTGAGAAAACTCCT+TGG + chr5_1:60663141-60663160 Msa0741170:CDS 35.0%
TGACATACATGTGCTTTCTT+AGG + chr5_1:60663541-60663560 Msa0741170:intron 35.0%
CATCAACAATAATGAGTGCT+GGG - chr5_1:60663645-60663664 None:intergenic 35.0%
AGCACTCATTATTGTTGATG+CGG + chr5_1:60663645-60663664 Msa0741170:CDS 35.0%
TTCCTCAAAAACCAAGTCAA+GGG - chr5_1:60663926-60663945 None:intergenic 35.0%
TATGAATTACCTGGTTGCTT+TGG - chr5_1:60663986-60664005 None:intergenic 35.0%
ATTTCACCACTGTCAATGTT+GGG - chr5_1:60664277-60664296 None:intergenic 35.0%
TATTTCACCACTGTCAATGT+TGG - chr5_1:60664278-60664297 None:intergenic 35.0%
ACAGTGGTGAAATAGTTAGA+AGG + chr5_1:60664284-60664303 Msa0741170:CDS 35.0%
CAGTGGTGAAATAGTTAGAA+GGG + chr5_1:60664285-60664304 Msa0741170:CDS 35.0%
TACAATTTAAGCTTAGGAGG+TGG + chr5_1:60664319-60664338 Msa0741170:CDS 35.0%
! GCTGGGAAAATTTTCAGAAT+AGG + chr5_1:60664355-60664374 Msa0741170:CDS 35.0%
CAAATTCTTGAAGGGATTAG+AGG - chr5_1:60664844-60664863 None:intergenic 35.0%
CATGTGACTCAAATTCTTGA+AGG - chr5_1:60664853-60664872 None:intergenic 35.0%
! ATGGATTTTGCTTATGGACC+TGG + chr5_1:60662322-60662341 Msa0741170:CDS 40.0%
ACAAAGAGATGGTTTCTTCC+AGG - chr5_1:60662343-60662362 None:intergenic 40.0%
AGAAACCATCTCTTTGTTCC+TGG + chr5_1:60662346-60662365 Msa0741170:CDS 40.0%
! TATTGACCGACTCAAAGTCA+GGG + chr5_1:60662745-60662764 Msa0741170:intron 40.0%
! CCTTCATTTGTTTCAGGTAC+CGG + chr5_1:60662862-60662881 Msa0741170:intron 40.0%
TGACAAATACTTTGTCTCCC+GGG + chr5_1:60662902-60662921 Msa0741170:CDS 40.0%
AAAAGATACAGTACGATCCC+CGG - chr5_1:60662923-60662942 None:intergenic 40.0%
TTCACAACGAGACAACAACA+GGG + chr5_1:60663103-60663122 Msa0741170:CDS 40.0%
CACAAACGCACATGACAATA+AGG - chr5_1:60663373-60663392 None:intergenic 40.0%
TCATGTGCACACAATCAACA+AGG - chr5_1:60663414-60663433 None:intergenic 40.0%
CAAACAAATGTAATGAGGCC+CGG - chr5_1:60663472-60663491 None:intergenic 40.0%
GCATCAACAATAATGAGTGC+TGG - chr5_1:60663646-60663665 None:intergenic 40.0%
TTGATTTCCGCATGGATGAA+TGG + chr5_1:60663686-60663705 Msa0741170:CDS 40.0%
TGATTTCCGCATGGATGAAT+GGG + chr5_1:60663687-60663706 Msa0741170:CDS 40.0%
! AGAAAGAGCTTTCTGAGAAC+TGG - chr5_1:60663731-60663750 None:intergenic 40.0%
AAAGCTCTTTCTCTTCCTAC+TGG + chr5_1:60663739-60663758 Msa0741170:CDS 40.0%
TCTTTCTCTTCCTACTGGAA+TGG + chr5_1:60663744-60663763 Msa0741170:CDS 40.0%
CTTTCTCTTCCTACTGGAAT+GGG + chr5_1:60663745-60663764 Msa0741170:CDS 40.0%
CATACAATTCCCATTCCAGT+AGG - chr5_1:60663757-60663776 None:intergenic 40.0%
TTCGAAGCTTCAATGGCTTT+AGG - chr5_1:60663787-60663806 None:intergenic 40.0%
TGCAGATTTCGAAGCTTCAA+TGG - chr5_1:60663794-60663813 None:intergenic 40.0%
GCTACAACTTGGGAACTTAT+TGG + chr5_1:60663857-60663876 Msa0741170:CDS 40.0%
! AACTGAATGGAAGGAGTGTA+TGG - chr5_1:60663883-60663902 None:intergenic 40.0%
TAGACCATAGAGCAACTGAA+TGG - chr5_1:60663896-60663915 None:intergenic 40.0%
TTCAGTTGCTCTATGGTCTA+AGG + chr5_1:60663896-60663915 Msa0741170:CDS 40.0%
TCAGTTGCTCTATGGTCTAA+GGG + chr5_1:60663897-60663916 Msa0741170:CDS 40.0%
CTTCCTCAAAAACCAAGTCA+AGG - chr5_1:60663927-60663946 None:intergenic 40.0%
!!! CTTGACTTGGTTTTTGAGGA+AGG + chr5_1:60663925-60663944 Msa0741170:CDS 40.0%
TCGCACATAGACTAGAGATT+TGG + chr5_1:60664079-60664098 Msa0741170:intron 40.0%
TATATGTAGGCTTGCAGTAG+AGG + chr5_1:60664180-60664199 Msa0741170:intron 40.0%
GAAGAATTGTTGCCAAAAGG+AGG + chr5_1:60664213-60664232 Msa0741170:CDS 40.0%
AACAACAATAGCAGTCACAC+TGG - chr5_1:60664251-60664270 None:intergenic 40.0%
GTGAAATAGTTAGAAGGGCA+TGG + chr5_1:60664290-60664309 Msa0741170:CDS 40.0%
! GTGGATTGAACAAAGTTGCT+GGG + chr5_1:60664338-60664357 Msa0741170:CDS 40.0%
ACATGTTGGCCATCTAAATG+AGG + chr5_1:60664378-60664397 Msa0741170:CDS 40.0%
GAGATGACACTCAAAGATGT+GGG + chr5_1:60664757-60664776 Msa0741170:CDS 40.0%
TAGGTCCAGGAACAAAGAGA+TGG - chr5_1:60662354-60662373 None:intergenic 45.0%
ACATGTTCAGGGATGTTGGT+AGG - chr5_1:60662373-60662392 None:intergenic 45.0%
CAGTTGTGGGGATGAGAAAT+GGG - chr5_1:60662507-60662526 None:intergenic 45.0%
! CTATTGACCGACTCAAAGTC+AGG + chr5_1:60662744-60662763 Msa0741170:intron 45.0%
CCGGTACCTGAAACAAATGA+AGG - chr5_1:60662865-60662884 None:intergenic 45.0%
GACAAATACTTTGTCTCCCG+GGG + chr5_1:60662903-60662922 Msa0741170:CDS 45.0%
AAAGATACAGTACGATCCCC+GGG - chr5_1:60662922-60662941 None:intergenic 45.0%
! TCGGACAATTCAGCTTGCTT+TGG + chr5_1:60662947-60662966 Msa0741170:CDS 45.0%
GTTCACAACGAGACAACAAC+AGG + chr5_1:60663102-60663121 Msa0741170:CDS 45.0%
TCACAACGAGACAACAACAG+GGG + chr5_1:60663104-60663123 Msa0741170:CDS 45.0%
GTTGATGCGGTGTCTTCAAT+CGG + chr5_1:60663658-60663677 Msa0741170:CDS 45.0%
GATTTCCGCATGGATGAATG+GGG + chr5_1:60663688-60663707 Msa0741170:CDS 45.0%
GGAATGGGAATTGTATGTGC+AGG + chr5_1:60663760-60663779 Msa0741170:CDS 45.0%
CCATAGAGCAACTGAATGGA+AGG - chr5_1:60663892-60663911 None:intergenic 45.0%
CCTTCCATTCAGTTGCTCTA+TGG + chr5_1:60663889-60663908 Msa0741170:CDS 45.0%
!!! AGCCCTTGACTTGGTTTTTG+AGG + chr5_1:60663921-60663940 Msa0741170:CDS 45.0%
ATTGTTGCCAAAAGGAGGAG+TGG + chr5_1:60664218-60664237 Msa0741170:CDS 45.0%
! CACTATACCACTCCTCCTTT+TGG - chr5_1:60664228-60664247 None:intergenic 45.0%
!! GGTGGATTGAACAAAGTTGC+TGG + chr5_1:60664337-60664356 Msa0741170:CDS 45.0%
!!! CAACTTTTGGGATGTCTTGC+TGG + chr5_1:60664730-60664749 Msa0741170:CDS 45.0%
GGAGATGACACTCAAAGATG+TGG + chr5_1:60664756-60664775 Msa0741170:CDS 45.0%
! ACTCAAAGATGTGGGTTACC+CGG + chr5_1:60664765-60664784 Msa0741170:CDS 45.0%
CCAGTTGTGGGGATGAGAAA+TGG - chr5_1:60662508-60662527 None:intergenic 50.0%
CCATTTCTCATCCCCACAAC+TGG + chr5_1:60662505-60662524 Msa0741170:CDS 50.0%
!! TTGTTTCAGGTACCGGTGCA+TGG + chr5_1:60662869-60662888 Msa0741170:intron 50.0%
!! TGTTTCAGGTACCGGTGCAT+GGG + chr5_1:60662870-60662889 Msa0741170:intron 50.0%
TGTAGAAAGTGAATGGGGCC+AGG + chr5_1:60663008-60663027 Msa0741170:CDS 50.0%
GTAGAAAGTGAATGGGGCCA+GGG + chr5_1:60663009-60663028 Msa0741170:CDS 50.0%
GTTAGAAGGGATGCTCACCA+AGG - chr5_1:60663161-60663180 None:intergenic 50.0%
!! CAATAATGAGTGCTGGGTGC+TGG - chr5_1:60663639-60663658 None:intergenic 50.0%
CTACACCCCATTCATCCATG+CGG - chr5_1:60663696-60663715 None:intergenic 50.0%
AGCGTTTAGCCAAAGCAACC+AGG + chr5_1:60663974-60663993 Msa0741170:CDS 50.0%
GTTCCTCCCAACATTGACAG+TGG + chr5_1:60664268-60664287 Msa0741170:CDS 50.0%
TCACCACTGTCAATGTTGGG+AGG - chr5_1:60664274-60664293 None:intergenic 50.0%
! TTTGGGATGTCTTGCTGGTG+TGG + chr5_1:60664735-60664754 Msa0741170:CDS 50.0%
! TCAGGGATGTTGGTAGGTCC+AGG - chr5_1:60662367-60662386 None:intergenic 55.0%
CTAGCGCCCTGACTTTGAGT+CGG - chr5_1:60662754-60662773 None:intergenic 55.0%
CAATGCACTCTCCCATGCAC+CGG - chr5_1:60662884-60662903 None:intergenic 55.0%
GAGCATCAAGATCAGCACCC+TGG - chr5_1:60663029-60663048 None:intergenic 55.0%
CGGAGCTCTTGATTTCCGCA+TGG + chr5_1:60663678-60663697 Msa0741170:CDS 55.0%
GGATGAATGGGGTGTAGACG+TGG + chr5_1:60663699-60663718 Msa0741170:CDS 55.0%
TCTAAGGGCAGCCCTTGACT+TGG + chr5_1:60663912-60663931 Msa0741170:CDS 55.0%
! TAGGCTTGCAGTAGAGGCGT+GGG + chr5_1:60664186-60664205 Msa0741170:intron 55.0%
TGGGTTACCCGGTCAAGCTT+GGG + chr5_1:60664776-60664795 Msa0741170:CDS 55.0%
ACTCCACTCCCAAGCTTGAC+CGG - chr5_1:60664787-60664806 None:intergenic 55.0%
GTAGGCTTGCAGTAGAGGCG+TGG + chr5_1:60664185-60664204 Msa0741170:intron 60.0%
! AGGCTTGCAGTAGAGGCGTG+GGG + chr5_1:60664187-60664206 Msa0741170:intron 60.0%
! GTGGGTTACCCGGTCAAGCT+TGG + chr5_1:60664775-60664794 Msa0741170:CDS 60.0%
TACCCGGTCAAGCTTGGGAG+TGG + chr5_1:60664781-60664800 Msa0741170:CDS 60.0%
CTCCACTCCCAAGCTTGACC+GGG - chr5_1:60664786-60664805 None:intergenic 60.0%
GGTCAAGCTTGGGAGTGGAG+TGG + chr5_1:60664786-60664805 Msa0741170:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 60662322 60664921 60662322 ID=Msa0741170;Name=Msa0741170
chr5_1 mRNA 60662322 60664921 60662322 ID=Msa0741170-mRNA-1;Parent=Msa0741170;Name=Msa0741170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0.4|1|1|1|5|57|401
chr5_1 exon 60662322 60662526 60662322 ID=Msa0741170-mRNA-1:exon:17514;Parent=Msa0741170-mRNA-1
chr5_1 exon 60662878 60663162 60662878 ID=Msa0741170-mRNA-1:exon:17515;Parent=Msa0741170-mRNA-1
chr5_1 exon 60663629 60663995 60663629 ID=Msa0741170-mRNA-1:exon:17516;Parent=Msa0741170-mRNA-1
chr5_1 exon 60664189 60664399 60664189 ID=Msa0741170-mRNA-1:exon:17517;Parent=Msa0741170-mRNA-1
chr5_1 exon 60664727 60664921 60664727 ID=Msa0741170-mRNA-1:exon:17518;Parent=Msa0741170-mRNA-1
chr5_1 CDS 60662322 60662526 60662322 ID=Msa0741170-mRNA-1:cds;Parent=Msa0741170-mRNA-1
chr5_1 CDS 60662878 60663162 60662878 ID=Msa0741170-mRNA-1:cds;Parent=Msa0741170-mRNA-1
chr5_1 CDS 60663629 60663995 60663629 ID=Msa0741170-mRNA-1:cds;Parent=Msa0741170-mRNA-1
chr5_1 CDS 60664189 60664399 60664189 ID=Msa0741170-mRNA-1:cds;Parent=Msa0741170-mRNA-1
chr5_1 CDS 60664727 60664864 60664727 ID=Msa0741170-mRNA-1:cds;Parent=Msa0741170-mRNA-1
chr5_1 three_prime_UTR 60664865 60664921 60664865 ID=Msa0741170-mRNA-1:three_prime_utr;Parent=Msa0741170-mRNA-1
Gene Sequence

>Msa0741170

ATGGATTTTGCTTATGGACCTGGAAGAAACCATCTCTTTGTTCCTGGACCTACCAACATCCCTGAACATGTTATTCGTGCAATGAACAGAAACAATGAAAATCATCGTACTCCAGCAATAACAGCATTGACAAAAACATTACTTGATGATGTCAAGAAAATTTTCAAGACTACTTCTGGAATCCCATTTCTCATCCCCACAACTGGTACCGGTGCATGGGAGAGTGCATTGACAAATACTTTGTCTCCCGGGGATCGTACTGTATCTTTTCTAATCGGACAATTCAGCTTGCTTTGGATTGAACAACAAAAACGCCTCAACTTTAAGGTTGATGTTGTAGAAAGTGAATGGGGCCAGGGTGCTGATCTTGATGCTCTAGAATCAAAACTGGCTTCAGATAAAACGCATACCATAAAGGCAATTTGTATTGTTCACAACGAGACAACAACAGGGGTCACAAATGACTTGACTAAAGTGAGAAAACTCCTTGACAAGTACCAGCACCCAGCACTCATTATTGTTGATGCGGTGTCTTCAATCGGAGCTCTTGATTTCCGCATGGATGAATGGGGTGTAGACGTGGTAGTGACCAGTTCTCAGAAAGCTCTTTCTCTTCCTACTGGAATGGGAATTGTATGTGCAGGACCTAAAGCCATTGAAGCTTCGAAATCTGCAAGATCACTTAGATCTTTCTTTGATTGGAATGGTTACTTGAAATGCTACAACTTGGGAACTTATTGGCCATACACTCCTTCCATTCAGTTGCTCTATGGTCTAAGGGCAGCCCTTGACTTGGTTTTTGAGGAAGGATTTGAAAATGTGATTTTAAGGCACAAGCGTTTAGCCAAAGCAACCAGGCTTGCAGTAGAGGCGTGGGGATTGAAGAATTGTTGCCAAAAGGAGGAGTGGTATAGTGCCAGTGTGACTGCTATTGTTGTTCCTCCCAACATTGACAGTGGTGAAATAGTTAGAAGGGCATGGAAGAGATACAATTTAAGCTTAGGAGGTGGATTGAACAAAGTTGCTGGGAAAATTTTCAGAATAGGACATGTTGGCCATCTAAATGAGCTGCAACTTTTGGGATGTCTTGCTGGTGTGGAGATGACACTCAAAGATGTGGGTTACCCGGTCAAGCTTGGGAGTGGAGTGGCTGCTGCTAGTGCTTATTTACTGAACAATGTTCCTCTAATCCCTTCAAGAATTTGA

Protein sequence

>Msa0741170

MDFAYGPGRNHLFVPGPTNIPEHVIRAMNRNNENHRTPAITALTKTLLDDVKKIFKTTSGIPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIEQQKRLNFKVDVVESEWGQGADLDALESKLASDKTHTIKAICIVHNETTTGVTNDLTKVRKLLDKYQHPALIIVDAVSSIGALDFRMDEWGVDVVVTSSQKALSLPTGMGIVCAGPKAIEASKSARSLRSFFDWNGYLKCYNLGTYWPYTPSIQLLYGLRAALDLVFEEGFENVILRHKRLAKATRLAVEAWGLKNCCQKEEWYSASVTAIVVPPNIDSGEIVRRAWKRYNLSLGGGLNKVAGKIFRIGHVGHLNELQLLGCLAGVEMTLKDVGYPVKLGSGVAAASAYLLNNVPLIPSRI*