AlfalfaGEDB | Msa0741170

M. sativa cultivar zhongmu-4 / Msa0741170

KEGG: K00830
GO: GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF00266.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741170	XP_003617296.1	98.254	401	7	0	1	401	1	401	0.0	816

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741170	sp\|Q56YA5\|SGAT_ARATH	80.299	401	79	0	1	401	1	401	0.0	684

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741170	G7KCY0	98.254	401	7	0	1	401	1	401	0.0	816

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0741170	-0.815790	7.719210e-52	-8.615850e-47
Msa0000800	Msa0741170	0.832687	8.200876e-56	-8.615850e-47
Msa0010150	Msa0741170	0.805067	1.596513e-49	-8.615850e-47
Msa0011060	Msa0741170	-0.812109	5.001379e-51	-8.615850e-47
Msa0011100	Msa0741170	-0.820159	7.946973e-53	-8.615850e-47
Msa0017710	Msa0741170	0.809455	1.876211e-50	-8.615850e-47
Msa0021240	Msa0741170	-0.813084	3.061512e-51	-8.615850e-47
Msa0024320	Msa0741170	-0.831271	1.834972e-55	-8.615850e-47
Msa0024490	Msa0741170	-0.821216	4.543585e-53	-8.615850e-47
Msa0024500	Msa0741170	-0.821860	3.225754e-53	-8.615850e-47

Showing 1 to 10 of 577 entries

Previous1 2 3 4 5…58Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741170	MtrunA17_Chr5g0442131	98.254	401	7	0	1	401	1	401	0.0	816
Msa0741170	MtrunA17_Chr3g0095111	82.045	401	72	0	1	401	1	401	0.0	693
Msa0741170	MtrunA17_Chr5g0445301	91.176	170	14	1	233	401	7	176	2.12e-109	318
Msa0741170	MtrunA17_Chr5g0428161	92.593	135	3	1	152	286	2	129	6.41e-85	254
Msa0741170	MtrunA17_Chr5g0428171	92.063	63	5	0	28	90	1	63	2.78e-32	116
Msa0741170	MtrunA17_Chr5g0445291	92.500	40	3	0	81	120	1	40	9.15e-21	85.5

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
Msa0741170	AT2G13360.3	80.299	401	79	1	401	1	401	684
Msa0741170	AT2G13360.1	80.299	401	79	1	401	1	401	684
Msa0741170	AT2G13360.2	80.299	401	79	1	401	1	401	684

Showing 1 to 3 of 3 entries

Previous1Next

Find 107 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATACAGTACGATCCC+CGG	0.500419	5_1:-60662920	None:intergenic
AAAGATACAGTACGATCCCC+GGG	0.598348	5_1:-60662919	None:intergenic
AAAGCTCTTTCTCTTCCTAC+TGG	0.444514	5_1:+60663739	Msa0741170:CDS
AACAACAATAGCAGTCACAC+TGG	0.660740	5_1:-60664248	None:intergenic
AACAATACAAATTGCCTTTA+TGG	0.084246	5_1:-60663082	None:intergenic
AACTGAATGGAAGGAGTGTA+TGG	0.455927	5_1:-60663880	None:intergenic
AAGAGATACAATTTAAGCTT+AGG	0.441477	5_1:+60664313	Msa0741170:CDS
AATAACATGTTCAGGGATGT+TGG	0.562695	5_1:-60662374	None:intergenic
AATAGTTTACCTCATTTAGA+TGG	0.313917	5_1:-60664387	None:intergenic
AATTATACAATACCAGTTGT+GGG	0.531739	5_1:-60662517	None:intergenic

Showing 1 to 10 of 107 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATTATACAATACCAGTTGTG+GGG	-	chr5_1:60662519-60662538	None:intergenic	30.0%
CAATTATACAATACCAGTTG+TGG	-	chr5_1:60662521-60662540	None:intergenic	30.0%
CACAACTGGTATTGTATAAT+TGG	+	chr5_1:60662519-60662538	Msa0741170:intron	30.0%
TCAATAGAAATTGTTCGAGA+CGG	-	chr5_1:60662731-60662750	None:intergenic	30.0%
TATGATCCTTCATTTGTTTC+AGG	+	chr5_1:60662856-60662875	Msa0741170:intron	30.0%
TTGATGTTGTAGAAAGTGAA+TGG	+	chr5_1:60663001-60663020	Msa0741170:CDS	30.0%
TGATGTTGTAGAAAGTGAAT+GGG	+	chr5_1:60663002-60663021	Msa0741170:CDS	30.0%
AGATAAAACGCATACCATAA+AGG	+	chr5_1:60663068-60663087	Msa0741170:CDS	30.0%
CAACAAGATATCACAATACA+TGG	-	chr5_1:60663325-60663344	None:intergenic	30.0%
TTGTGATATCTTGTTGATCA+AGG	+	chr5_1:60663329-60663348	Msa0741170:intron	30.0%

Showing 1 to 10 of 163 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	60662322	60664921	60662322	ID=Msa0741170;Name=Msa0741170
chr5_1	mRNA	60662322	60664921	60662322	ID=Msa0741170-mRNA-1;Parent=Msa0741170;Name=Msa0741170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0.5\|0.4\|1\|1\|1\|5\|57\|401
chr5_1	exon	60662322	60662526	60662322	ID=Msa0741170-mRNA-1:exon:17514;Parent=Msa0741170-mRNA-1
chr5_1	exon	60662878	60663162	60662878	ID=Msa0741170-mRNA-1:exon:17515;Parent=Msa0741170-mRNA-1
chr5_1	exon	60663629	60663995	60663629	ID=Msa0741170-mRNA-1:exon:17516;Parent=Msa0741170-mRNA-1
chr5_1	exon	60664189	60664399	60664189	ID=Msa0741170-mRNA-1:exon:17517;Parent=Msa0741170-mRNA-1
chr5_1	exon	60664727	60664921	60664727	ID=Msa0741170-mRNA-1:exon:17518;Parent=Msa0741170-mRNA-1
chr5_1	CDS	60662322	60662526	60662322	ID=Msa0741170-mRNA-1:cds;Parent=Msa0741170-mRNA-1
chr5_1	CDS	60662878	60663162	60662878	ID=Msa0741170-mRNA-1:cds;Parent=Msa0741170-mRNA-1
chr5_1	CDS	60663629	60663995	60663629	ID=Msa0741170-mRNA-1:cds;Parent=Msa0741170-mRNA-1
chr5_1	CDS	60664189	60664399	60664189	ID=Msa0741170-mRNA-1:cds;Parent=Msa0741170-mRNA-1
chr5_1	CDS	60664727	60664864	60664727	ID=Msa0741170-mRNA-1:cds;Parent=Msa0741170-mRNA-1
chr5_1	three_prime_UTR	60664865	60664921	60664865	ID=Msa0741170-mRNA-1:three_prime_utr;Parent=Msa0741170-mRNA-1

Gene Sequence

>Msa0741170

ATGGATTTTGCTTATGGACCTGGAAGAAACCATCTCTTTGTTCCTGGACCTACCAACATCCCTGAACATGTTATTCGTGCAATGAACAGAAACAATGAAAATCATCGTACTCCAGCAATAACAGCATTGACAAAAACATTACTTGATGATGTCAAGAAAATTTTCAAGACTACTTCTGGAATCCCATTTCTCATCCCCACAACTGGTACCGGTGCATGGGAGAGTGCATTGACAAATACTTTGTCTCCCGGGGATCGTACTGTATCTTTTCTAATCGGACAATTCAGCTTGCTTTGGATTGAACAACAAAAACGCCTCAACTTTAAGGTTGATGTTGTAGAAAGTGAATGGGGCCAGGGTGCTGATCTTGATGCTCTAGAATCAAAACTGGCTTCAGATAAAACGCATACCATAAAGGCAATTTGTATTGTTCACAACGAGACAACAACAGGGGTCACAAATGACTTGACTAAAGTGAGAAAACTCCTTGACAAGTACCAGCACCCAGCACTCATTATTGTTGATGCGGTGTCTTCAATCGGAGCTCTTGATTTCCGCATGGATGAATGGGGTGTAGACGTGGTAGTGACCAGTTCTCAGAAAGCTCTTTCTCTTCCTACTGGAATGGGAATTGTATGTGCAGGACCTAAAGCCATTGAAGCTTCGAAATCTGCAAGATCACTTAGATCTTTCTTTGATTGGAATGGTTACTTGAAATGCTACAACTTGGGAACTTATTGGCCATACACTCCTTCCATTCAGTTGCTCTATGGTCTAAGGGCAGCCCTTGACTTGGTTTTTGAGGAAGGATTTGAAAATGTGATTTTAAGGCACAAGCGTTTAGCCAAAGCAACCAGGCTTGCAGTAGAGGCGTGGGGATTGAAGAATTGTTGCCAAAAGGAGGAGTGGTATAGTGCCAGTGTGACTGCTATTGTTGTTCCTCCCAACATTGACAGTGGTGAAATAGTTAGAAGGGCATGGAAGAGATACAATTTAAGCTTAGGAGGTGGATTGAACAAAGTTGCTGGGAAAATTTTCAGAATAGGACATGTTGGCCATCTAAATGAGCTGCAACTTTTGGGATGTCTTGCTGGTGTGGAGATGACACTCAAAGATGTGGGTTACCCGGTCAAGCTTGGGAGTGGAGTGGCTGCTGCTAGTGCTTATTTACTGAACAATGTTCCTCTAATCCCTTCAAGAATTTGA

Protein sequence

>Msa0741170

MDFAYGPGRNHLFVPGPTNIPEHVIRAMNRNNENHRTPAITALTKTLLDDVKKIFKTTSGIPFLIPTTGTGAWESALTNTLSPGDRTVSFLIGQFSLLWIEQQKRLNFKVDVVESEWGQGADLDALESKLASDKTHTIKAICIVHNETTTGVTNDLTKVRKLLDKYQHPALIIVDAVSSIGALDFRMDEWGVDVVVTSSQKALSLPTGMGIVCAGPKAIEASKSARSLRSFFDWNGYLKCYNLGTYWPYTPSIQLLYGLRAALDLVFEEGFENVILRHKRLAKATRLAVEAWGLKNCCQKEEWYSASVTAIVVPPNIDSGEIVRRAWKRYNLSLGGGLNKVAGKIFRIGHVGHLNELQLLGCLAGVEMTLKDVGYPVKLGSGVAAASAYLLNNVPLIPSRI*