AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795330 MtrunA17_Chr5g0397821 97.925 241 5 0 1 241 1 241 6.26e-178 488
Msa0795330 MtrunA17_Chr8g0386341 63.348 221 78 2 6 225 30 248 1.32e-102 298
Msa0795330 MtrunA17_Chr5g0397831 54.825 228 94 1 7 225 9 236 1.90e-90 266
Msa0795330 MtrunA17_Chr8g0386351 46.018 226 71 4 1 225 43 218 6.79e-57 180
Msa0795330 MtrunA17_Chr5g0428801 42.683 246 113 8 5 225 8 250 3.74e-55 179
Msa0795330 MtrunA17_Chr5g0424221 47.511 221 96 8 19 224 24 239 8.54e-55 177
Msa0795330 MtrunA17_Chr1g0154591 43.860 228 106 7 21 228 10 235 3.71e-53 171
Msa0795330 MtrunA17_Chr6g0482741 42.083 240 115 8 6 225 5 240 9.42e-52 168
Msa0795330 MtrunA17_Chr4g0037331 44.856 243 111 12 1 224 1 239 1.46e-50 168
Msa0795330 MtrunA17_Chr3g0141341 41.810 232 113 8 14 225 2 231 2.13e-50 164
Msa0795330 MtrunA17_Chr1g0156711 39.271 247 125 8 1 224 1 245 3.20e-49 164
Msa0795330 MtrunA17_Chr8g0371771 41.667 240 109 10 3 224 17 243 3.80e-48 160
Msa0795330 MtrunA17_Chr8g0392961 38.866 247 123 9 2 225 4 245 9.52e-48 158
Msa0795330 MtrunA17_Chr3g0142781 38.400 250 128 8 1 225 1 249 1.98e-47 159
Msa0795330 MtrunA17_Chr5g0405581 40.081 247 118 10 7 225 7 251 3.46e-47 158
Msa0795330 MtrunA17_Chr7g0265011 40.891 247 122 10 1 225 43 287 4.96e-47 157
Msa0795330 MtrunA17_Chr8g0352471 40.496 242 118 9 8 225 8 247 5.03e-47 158
Msa0795330 MtrunA17_Chr5g0405611 41.803 244 109 13 3 226 79 309 7.23e-47 159
Msa0795330 MtrunA17_Chr2g0311521 41.532 248 117 11 1 225 5 247 9.19e-47 166
Msa0795330 MtrunA17_Chr8g0357311 39.506 243 121 9 7 225 7 247 9.71e-47 155
Msa0795330 MtrunA17_Chr4g0037351 39.200 250 120 9 1 226 8 249 1.91e-46 157
Msa0795330 MtrunA17_Chr8g0351851 38.174 241 125 9 4 224 1 237 3.68e-46 153
Msa0795330 MtrunA17_Chr2g0312181 38.912 239 126 6 7 225 5 243 9.35e-46 152
Msa0795330 MtrunA17_Chr1g0180121 38.525 244 126 9 4 225 1 242 4.43e-45 151
Msa0795330 MtrunA17_Chr1g0180161 37.945 253 131 11 4 234 1 249 4.60e-45 151
Msa0795330 MtrunA17_Chr1g0179851 38.554 249 119 10 1 225 1 239 2.03e-44 149
Msa0795330 MtrunA17_Chr8g0371781 40.175 229 108 8 23 224 27 253 8.97e-44 149
Msa0795330 MtrunA17_Chr3g0112091 39.485 233 118 9 14 225 7 237 1.34e-43 147
Msa0795330 MtrunA17_Chr7g0239131 37.652 247 127 9 1 225 1 242 1.55e-42 144
Msa0795330 MtrunA17_Chr2g0311551 40.693 231 113 9 18 226 17 245 8.63e-42 151
Msa0795330 MtrunA17_Chr2g0311561 37.447 235 123 9 14 226 1 233 1.22e-41 143
Msa0795330 MtrunA17_Chr1g0180231 40.359 223 110 8 24 225 22 242 3.79e-41 140
Msa0795330 MtrunA17_Chr1g0179871 40.359 223 110 8 24 225 22 242 3.79e-41 140
Msa0795330 MtrunA17_Chr1g0179891 38.462 234 121 8 13 225 6 237 4.03e-41 140
Msa0795330 MtrunA17_Chr4g0031221 37.447 235 121 9 14 224 19 251 5.56e-41 140
Msa0795330 MtrunA17_Chr6g0452331 36.400 250 131 10 4 227 7 254 2.71e-40 139
Msa0795330 MtrunA17_Chr1g0180221 38.333 240 122 9 7 225 48 282 7.44e-40 139
Msa0795330 MtrunA17_Chr2g0311531 41.905 210 102 9 23 225 26 222 1.56e-38 134
Msa0795330 MtrunA17_Chr2g0311501 33.846 195 109 9 58 235 1 192 4.01e-25 98.2
Msa0795330 MtrunA17_Chr5g0406771 33.714 175 96 6 13 167 2 176 7.54e-24 94.4
Msa0795330 MtrunA17_Chr1g0179911 27.848 237 150 8 6 225 6 238 3.70e-21 89.0
Msa0795330 MtrunA17_Chr2g0309611 27.984 243 152 10 1 223 10 249 6.65e-20 85.5
Msa0795330 MtrunA17_Chr1g0180181 41.758 91 42 3 153 234 18 106 2.27e-16 72.8
Msa0795330 MtrunA17_Chr8g0386361 56.140 57 19 2 1 56 1 52 1.74e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795330 AT4G11650.1 73.778 225 57 2 1 225 1 223 1.65e-120 343
Msa0795330 AT1G75050.1 44.215 242 114 6 3 225 4 243 1.42e-58 186
Msa0795330 AT1G75040.1 42.623 244 116 7 1 225 1 239 1.09e-56 181
Msa0795330 AT1G75030.1 42.041 245 120 7 1 225 1 243 4.25e-54 174
Msa0795330 AT1G77700.3 43.590 234 112 7 6 224 43 271 1.37e-53 176
Msa0795330 AT1G77700.2 43.590 234 112 7 6 224 43 271 1.74e-53 175
Msa0795330 AT4G38660.1 45.798 238 109 10 5 225 11 245 9.72e-53 174
Msa0795330 AT1G77700.1 44.495 218 101 7 22 224 87 299 1.90e-52 174
Msa0795330 AT4G38670.3 39.754 244 122 9 6 225 5 247 3.75e-51 168
Msa0795330 AT4G38670.1 39.754 244 122 9 6 225 5 247 3.75e-51 168
Msa0795330 AT5G24620.1 41.434 251 114 10 3 225 6 251 5.25e-51 171
Msa0795330 AT5G24620.4 41.434 251 114 10 3 225 61 306 9.02e-51 172
Msa0795330 AT5G24620.3 41.434 251 114 10 3 225 82 327 1.16e-50 172
Msa0795330 AT1G19320.1 40.244 246 117 10 1 224 9 246 2.81e-49 162
Msa0795330 AT4G38660.2 45.778 225 102 10 18 225 2 223 3.68e-49 164
Msa0795330 AT1G73620.1 42.222 225 107 7 21 225 39 260 1.14e-48 161
Msa0795330 AT4G38670.2 40.789 228 110 9 22 225 5 231 4.87e-48 159
Msa0795330 AT1G75800.1 40.175 229 111 7 22 225 21 248 1.47e-47 160
Msa0795330 AT1G20030.1 40.708 226 108 7 25 225 4 228 2.20e-47 159
Msa0795330 AT1G18250.2 41.778 225 108 8 21 225 19 240 2.80e-47 157
Msa0795330 AT1G20030.2 40.708 226 108 7 25 225 21 245 3.64e-47 159
Msa0795330 AT1G18250.1 41.333 225 109 8 21 225 18 239 5.72e-47 156
Msa0795330 AT2G17860.1 40.083 242 116 9 11 225 10 249 1.60e-46 155
Msa0795330 AT4G36010.1 40.167 239 113 9 22 232 21 257 2.56e-45 154
Msa0795330 AT4G36010.2 40.167 239 113 9 22 232 21 257 2.56e-45 154
Msa0795330 AT4G24180.6 37.984 258 116 11 1 225 10 256 2.76e-43 147
Msa0795330 AT4G24180.1 37.984 258 116 11 1 225 10 256 1.32e-42 147
Msa0795330 AT4G24180.5 38.400 250 109 12 9 225 14 251 3.95e-42 144
Msa0795330 AT4G24180.2 38.400 250 109 12 9 225 14 251 1.18e-41 144
Msa0795330 AT5G38280.2 34.630 257 141 8 7 238 9 263 4.87e-40 146
Msa0795330 AT5G38280.1 34.630 257 141 8 7 238 9 263 6.17e-40 145
Msa0795330 AT5G02140.1 37.131 237 127 9 10 225 6 241 1.41e-37 133
Msa0795330 AT5G02140.2 37.131 237 127 9 10 225 6 241 2.02e-37 131
Msa0795330 AT1G70250.1 34.956 226 118 8 25 225 146 367 7.79e-37 137
Msa0795330 AT4G24180.3 36.777 242 110 10 1 209 10 241 7.90e-37 132
Msa0795330 AT5G40020.1 30.830 253 135 9 2 225 7 248 1.62e-36 129
Msa0795330 AT2G28790.1 35.146 239 127 10 13 224 11 248 5.93e-36 128
Msa0795330 AT2G28790.2 35.146 239 127 10 13 224 36 273 6.64e-36 128
Msa0795330 AT4G24180.4 37.179 234 103 11 9 209 14 236 9.26e-36 129
Msa0795330 AT4G36000.2 45.714 140 68 5 92 225 1 138 2.33e-33 120
Msa0795330 AT4G36000.1 45.714 140 68 5 92 225 1 138 2.33e-33 120
Msa0795330 AT4G18253.1 30.833 240 137 9 7 225 7 238 1.65e-24 98.2
Msa0795330 AT4G18250.1 31.301 246 151 8 1 230 34 277 1.12e-22 96.7
Msa0795330 AT5G24620.2 42.623 122 50 5 122 225 15 134 9.91e-20 86.3

Find 86 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGAGTCCTCAATTCTTT+AGG 0.199273 5_3:-7281075 None:intergenic
TACCGCCATGGCTCGTATTT+GGG 0.216063 5_3:+7280801 Msa0795330:CDS
ATGGATTTCTTCCCTCTTAA+TGG 0.218122 5_3:+7281006 Msa0795330:CDS
GTACCGCCATGGCTCGTATT+TGG 0.222625 5_3:+7280800 Msa0795330:CDS
CTTGAGTCCTCAATTCTTTA+GGG 0.229087 5_3:-7281074 None:intergenic
AAGGAGTGAGGGTGAGTAGT+AGG 0.288125 5_3:-7280657 None:intergenic
TCGAGGCGGCGACCACCGCC+TGG 0.296708 5_3:-7280742 None:intergenic
AGAAATCTTGATTTCCGAAT+TGG 0.317167 5_3:-7280948 None:intergenic
ACAATTGCCCTTACACCGTT+TGG 0.330621 5_3:+7280707 Msa0795330:CDS
AATGAATATTGTTGCACTAA+TGG 0.346009 5_3:+7281132 Msa0795330:CDS
GCAGCTGCCCAAACGGTGTA+AGG 0.366048 5_3:-7280715 None:intergenic
GAATTGGTTTAACGCATATT+CGG 0.379434 5_3:-7280932 None:intergenic
GGTCGTGGCCGTTGCCAAAC+AGG 0.379579 5_3:+7280853 Msa0795330:CDS
AACTTTGATGGCAGCGGTCG+TGG 0.386076 5_3:+7280838 Msa0795330:CDS
TACACACTGGTCTGGTTTAG+TGG 0.389430 5_3:-7281318 None:intergenic
TGGACTCCAATGTACTGGTT+GGG 0.393400 5_3:+7280888 Msa0795330:CDS
CGCACCGGTTGCAACTTTGA+TGG 0.400828 5_3:+7280826 Msa0795330:CDS
GCATATTCGGCTAATGTGTT+TGG 0.402845 5_3:-7280919 None:intergenic
AGGGCACTGTCCGTTAATAT+CGG 0.417931 5_3:-7281055 None:intergenic
ATTAGTGCAACAATATTCAT+TGG 0.423057 5_3:-7281130 None:intergenic
AGTTGCACTGCCGATATTAA+CGG 0.432233 5_3:+7281045 Msa0795330:CDS
CACCGGTGCAATCACCTGTT+TGG 0.438754 5_3:-7280867 None:intergenic
TGGGCTAGCAGCTGCCCAAA+CGG 0.440365 5_3:-7280722 None:intergenic
CAATTGCCCTTACACCGTTT+GGG 0.441211 5_3:+7280708 Msa0795330:CDS
GCGGTCAAACATGGAACCTC+TGG 0.442503 5_3:+7280767 Msa0795330:CDS
CATTTCAATACACACTGGTC+TGG 0.444048 5_3:-7281326 None:intergenic
AGTACTTTCACTTGTCCTGC+TGG 0.444797 5_3:+7281243 Msa0795330:CDS
TTGTGGCATCCACCATTAAG+AGG 0.446706 5_3:-7281018 None:intergenic
TCCATGTTTGACCGCGGTCG+AGG 0.458130 5_3:-7280759 None:intergenic
AGGAGTGAGGGTGAGTAGTA+GGG 0.465064 5_3:-7280656 None:intergenic
GAATATGCGTTAAACCAATT+CGG 0.474473 5_3:+7280934 Msa0795330:CDS
TATTCGGCTAATGTGTTTGG+TGG 0.475364 5_3:-7280916 None:intergenic
AAGTGGGTCCACAGCTTCCT+TGG 0.484930 5_3:-7281155 None:intergenic
TACTTGTTGGATCATCTTGA+GGG 0.496803 5_3:-7281224 None:intergenic
ATTGTTGACGATCTCAAAGT+TGG 0.500722 5_3:-7280689 None:intergenic
GCTGCCATCAAAGTTGCAAC+CGG 0.505235 5_3:-7280830 None:intergenic
ATACGAGCCATGGCGGTACC+AGG 0.507450 5_3:-7280796 None:intergenic
GCAGCTGCTAGCCCAGGCGG+TGG 0.514788 5_3:+7280730 Msa0795330:CDS
GTTTGGGCAGCTGCTAGCCC+AGG 0.516906 5_3:+7280724 Msa0795330:CDS
TGCAATCACCTGTTTGGCAA+CGG 0.520534 5_3:-7280861 None:intergenic
GCCTCGACCGCGGTCAAACA+TGG 0.523542 5_3:+7280758 Msa0795330:CDS
CGATGGTTTCAACATCCCAA+TGG 0.524206 5_3:+7280987 Msa0795330:CDS
GTGGACTCCAATGTACTGGT+TGG 0.524692 5_3:+7280887 Msa0795330:CDS
TACGACATCTCACTTGTCGA+TGG 0.528359 5_3:+7280970 Msa0795330:CDS
GGACAAGTGAAAGTACTTGT+TGG 0.531593 5_3:-7281237 None:intergenic
GATTTCTTCCCTCTTAATGG+TGG 0.535456 5_3:+7281009 Msa0795330:CDS
GTACTTGTTGGATCATCTTG+AGG 0.536813 5_3:-7281225 None:intergenic
GCTCGTATTTGGGGTCGCAC+CGG 0.540712 5_3:+7280811 Msa0795330:CDS
TGGAACCTCTGGGTTAATCC+TGG 0.543119 5_3:+7280778 Msa0795330:CDS
GTGGACCCACTTATTTCTCA+AGG 0.546200 5_3:+7281166 Msa0795330:CDS
TCAAAGTTGGCTGCTTGTGA+AGG 0.547034 5_3:-7280676 None:intergenic
TTAAGAGGGAAGAAATCCAT+TGG 0.547257 5_3:-7281003 None:intergenic
GGACTCCAATGTACTGGTTG+GGG 0.549101 5_3:+7280889 Msa0795330:CDS
TTTAGTGGCATCTCAATATG+AGG 0.552341 5_3:-7281303 None:intergenic
GGTTGCAACTTTGATGGCAG+CGG 0.554541 5_3:+7280832 Msa0795330:CDS
TAAGAGGGAAGAAATCCATT+GGG 0.555277 5_3:-7281002 None:intergenic
CGAGGCGGCGACCACCGCCT+GGG 0.558748 5_3:-7280741 None:intergenic
ACCGGTGGACTCCAATGTAC+TGG 0.567872 5_3:+7280883 Msa0795330:CDS
GGGAGCATAGTGTGAATGTG+AGG 0.572658 5_3:-7280636 None:intergenic
GGTTAATCCTGGTACCGCCA+TGG 0.575016 5_3:+7280789 Msa0795330:CDS
TATTGTTGCACTAATGGCCA+AGG 0.575870 5_3:+7281138 Msa0795330:CDS
CAGCTGCCCAAACGGTGTAA+GGG 0.577110 5_3:-7280714 None:intergenic
GGACACCCCAACCAGTACAT+TGG 0.577383 5_3:-7280894 None:intergenic
ACCGCCATGGCTCGTATTTG+GGG 0.579247 5_3:+7280802 Msa0795330:CDS
CCTAAAGAATTGAGGACTCA+AGG 0.579944 5_3:+7281075 Msa0795330:CDS
GACAGTGCCCTAAAGAATTG+AGG 0.582616 5_3:+7281067 Msa0795330:CDS
TGCCAAACAGGTGATTGCAC+CGG 0.588418 5_3:+7280865 Msa0795330:CDS
ATTCGGCTAATGTGTTTGGT+GGG 0.589352 5_3:-7280915 None:intergenic
TGGGCAGCTGCTAGCCCAGG+CGG 0.593879 5_3:+7280727 Msa0795330:CDS
GCGACCCCAAATACGAGCCA+TGG 0.594263 5_3:-7280806 None:intergenic
ACCAGTACATTGGAGTCCAC+CGG 0.599388 5_3:-7280884 None:intergenic
GGTGGTCGCCGCCTCGACCG+CGG 0.599782 5_3:+7280748 Msa0795330:CDS
TGTGGCATCCACCATTAAGA+GGG 0.600994 5_3:-7281017 None:intergenic
CGGTCAAACATGGAACCTCT+GGG 0.601212 5_3:+7280768 Msa0795330:CDS
ATGTTTGACCGCGGTCGAGG+CGG 0.603815 5_3:-7280756 None:intergenic
TGGCTGCTTGTGAAGGAGTG+AGG 0.609598 5_3:-7280669 None:intergenic
GGCTGCTTGTGAAGGAGTGA+GGG 0.609799 5_3:-7280668 None:intergenic
ACTTTGTAGTTAGATCCAGC+AGG 0.625794 5_3:-7281258 None:intergenic
CAAACAGGTGATTGCACCGG+TGG 0.628067 5_3:+7280868 Msa0795330:CDS
ACTAATGGCCAAGGAAGCTG+TGG 0.677244 5_3:+7281147 Msa0795330:CDS
ATACACATTTCAATACACAC+TGG 0.687621 5_3:-7281331 None:intergenic
AGAGGTTCCATGTTTGACCG+CGG 0.689871 5_3:-7280765 None:intergenic
ACCCCAAATACGAGCCATGG+CGG 0.699584 5_3:-7280803 None:intergenic
TCAATATGAGGAGCTCCAAG+AGG 0.715579 5_3:-7281291 None:intergenic
CGGTACCAGGATTAACCCAG+AGG 0.716660 5_3:-7280783 None:intergenic
AAAGAATTGAGGACTCAAGG+TGG 0.728458 5_3:+7281078 Msa0795330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTCTCAAGGTTTTTTA+AGG + chr5_3:7281176-7281195 Msa0795330:CDS 20.0%
! ATTAGTGCAACAATATTCAT+TGG - chr5_3:7281133-7281152 None:intergenic 25.0%
! AATGAATATTGTTGCACTAA+TGG + chr5_3:7281132-7281151 Msa0795330:CDS 25.0%
! AAAAACCTTGAGAAATAAGT+GGG - chr5_3:7281174-7281193 None:intergenic 25.0%
! AAAAAACCTTGAGAAATAAG+TGG - chr5_3:7281175-7281194 None:intergenic 25.0%
! GAATTGGTTTAACGCATATT+CGG - chr5_3:7280935-7280954 None:intergenic 30.0%
GAATATGCGTTAAACCAATT+CGG + chr5_3:7280934-7280953 Msa0795330:CDS 30.0%
AGAAATCTTGATTTCCGAAT+TGG - chr5_3:7280951-7280970 None:intergenic 30.0%
! TGGTCTTAAAAACTGTACAA+GGG - chr5_3:7281113-7281132 None:intergenic 30.0%
!! TTGGTCTTAAAAACTGTACA+AGG - chr5_3:7281114-7281133 None:intergenic 30.0%
!!! TCTCAAGGTTTTTTAAGGAT+AGG + chr5_3:7281181-7281200 Msa0795330:CDS 30.0%
ATTGTTGACGATCTCAAAGT+TGG - chr5_3:7280692-7280711 None:intergenic 35.0%
TAAGAGGGAAGAAATCCATT+GGG - chr5_3:7281005-7281024 None:intergenic 35.0%
TTAAGAGGGAAGAAATCCAT+TGG - chr5_3:7281006-7281025 None:intergenic 35.0%
ATGGATTTCTTCCCTCTTAA+TGG + chr5_3:7281006-7281025 Msa0795330:CDS 35.0%
CTTGAGTCCTCAATTCTTTA+GGG - chr5_3:7281077-7281096 None:intergenic 35.0%
! TACTTGTTGGATCATCTTGA+GGG - chr5_3:7281227-7281246 None:intergenic 35.0%
!! AAAGTTGTTTTCTGTCCTCT+TGG + chr5_3:7281276-7281295 Msa0795330:CDS 35.0%
TTTAGTGGCATCTCAATATG+AGG - chr5_3:7281306-7281325 None:intergenic 35.0%
ATTCGGCTAATGTGTTTGGT+GGG - chr5_3:7280918-7280937 None:intergenic 40.0%
TATTCGGCTAATGTGTTTGG+TGG - chr5_3:7280919-7280938 None:intergenic 40.0%
GCATATTCGGCTAATGTGTT+TGG - chr5_3:7280922-7280941 None:intergenic 40.0%
GATTTCTTCCCTCTTAATGG+TGG + chr5_3:7281009-7281028 Msa0795330:CDS 40.0%
AGTTGCACTGCCGATATTAA+CGG + chr5_3:7281045-7281064 Msa0795330:CDS 40.0%
CCTTGAGTCCTCAATTCTTT+AGG - chr5_3:7281078-7281097 None:intergenic 40.0%
CCTAAAGAATTGAGGACTCA+AGG + chr5_3:7281075-7281094 Msa0795330:CDS 40.0%
AAAGAATTGAGGACTCAAGG+TGG + chr5_3:7281078-7281097 Msa0795330:CDS 40.0%
TATTGTTGCACTAATGGCCA+AGG + chr5_3:7281138-7281157 Msa0795330:CDS 40.0%
! GTACTTGTTGGATCATCTTG+AGG - chr5_3:7281228-7281247 None:intergenic 40.0%
!! GGACAAGTGAAAGTACTTGT+TGG - chr5_3:7281240-7281259 None:intergenic 40.0%
ACTTTGTAGTTAGATCCAGC+AGG - chr5_3:7281261-7281280 None:intergenic 40.0%
TCAAAGTTGGCTGCTTGTGA+AGG - chr5_3:7280679-7280698 None:intergenic 45.0%
ACAATTGCCCTTACACCGTT+TGG + chr5_3:7280707-7280726 Msa0795330:CDS 45.0%
CAATTGCCCTTACACCGTTT+GGG + chr5_3:7280708-7280727 Msa0795330:CDS 45.0%
TGCAATCACCTGTTTGGCAA+CGG - chr5_3:7280864-7280883 None:intergenic 45.0%
!! TGGACTCCAATGTACTGGTT+GGG + chr5_3:7280888-7280907 Msa0795330:CDS 45.0%
TACGACATCTCACTTGTCGA+TGG + chr5_3:7280970-7280989 Msa0795330:CDS 45.0%
CGATGGTTTCAACATCCCAA+TGG + chr5_3:7280987-7281006 Msa0795330:CDS 45.0%
TGTGGCATCCACCATTAAGA+GGG - chr5_3:7281020-7281039 None:intergenic 45.0%
TTGTGGCATCCACCATTAAG+AGG - chr5_3:7281021-7281040 None:intergenic 45.0%
!! AGGGCACTGTCCGTTAATAT+CGG - chr5_3:7281058-7281077 None:intergenic 45.0%
GACAGTGCCCTAAAGAATTG+AGG + chr5_3:7281067-7281086 Msa0795330:CDS 45.0%
! GTGGACCCACTTATTTCTCA+AGG + chr5_3:7281166-7281185 Msa0795330:CDS 45.0%
AGTACTTTCACTTGTCCTGC+TGG + chr5_3:7281243-7281262 Msa0795330:CDS 45.0%
TCAATATGAGGAGCTCCAAG+AGG - chr5_3:7281294-7281313 None:intergenic 45.0%
! TACACACTGGTCTGGTTTAG+TGG - chr5_3:7281321-7281340 None:intergenic 45.0%
! GGGAGCATAGTGTGAATGTG+AGG - chr5_3:7280639-7280658 None:intergenic 50.0%
AGGAGTGAGGGTGAGTAGTA+GGG - chr5_3:7280659-7280678 None:intergenic 50.0%
AAGGAGTGAGGGTGAGTAGT+AGG - chr5_3:7280660-7280679 None:intergenic 50.0%
AGAGGTTCCATGTTTGACCG+CGG - chr5_3:7280768-7280787 None:intergenic 50.0%
CGGTCAAACATGGAACCTCT+GGG + chr5_3:7280768-7280787 Msa0795330:CDS 50.0%
TGGAACCTCTGGGTTAATCC+TGG + chr5_3:7280778-7280797 Msa0795330:CDS 50.0%
TACCGCCATGGCTCGTATTT+GGG + chr5_3:7280801-7280820 Msa0795330:CDS 50.0%
GCTGCCATCAAAGTTGCAAC+CGG - chr5_3:7280833-7280852 None:intergenic 50.0%
! GGTTGCAACTTTGATGGCAG+CGG + chr5_3:7280832-7280851 Msa0795330:CDS 50.0%
TGCCAAACAGGTGATTGCAC+CGG + chr5_3:7280865-7280884 Msa0795330:CDS 50.0%
ACCAGTACATTGGAGTCCAC+CGG - chr5_3:7280887-7280906 None:intergenic 50.0%
! GTGGACTCCAATGTACTGGT+TGG + chr5_3:7280887-7280906 Msa0795330:CDS 50.0%
!! GGACTCCAATGTACTGGTTG+GGG + chr5_3:7280889-7280908 Msa0795330:CDS 50.0%
!! CGGCAGTGCAACTGATTTTG+TGG - chr5_3:7281038-7281057 None:intergenic 50.0%
ACTAATGGCCAAGGAAGCTG+TGG + chr5_3:7281147-7281166 Msa0795330:CDS 50.0%
GGCTGCTTGTGAAGGAGTGA+GGG - chr5_3:7280671-7280690 None:intergenic 55.0%
TGGCTGCTTGTGAAGGAGTG+AGG - chr5_3:7280672-7280691 None:intergenic 55.0%
CAGCTGCCCAAACGGTGTAA+GGG - chr5_3:7280717-7280736 None:intergenic 55.0%
GCGGTCAAACATGGAACCTC+TGG + chr5_3:7280767-7280786 Msa0795330:CDS 55.0%
CGGTACCAGGATTAACCCAG+AGG - chr5_3:7280786-7280805 None:intergenic 55.0%
GGTTAATCCTGGTACCGCCA+TGG + chr5_3:7280789-7280808 Msa0795330:CDS 55.0%
GTACCGCCATGGCTCGTATT+TGG + chr5_3:7280800-7280819 Msa0795330:CDS 55.0%
ACCGCCATGGCTCGTATTTG+GGG + chr5_3:7280802-7280821 Msa0795330:CDS 55.0%
ACCCCAAATACGAGCCATGG+CGG - chr5_3:7280806-7280825 None:intergenic 55.0%
!! CGCACCGGTTGCAACTTTGA+TGG + chr5_3:7280826-7280845 Msa0795330:CDS 55.0%
! AACTTTGATGGCAGCGGTCG+TGG + chr5_3:7280838-7280857 Msa0795330:CDS 55.0%
CACCGGTGCAATCACCTGTT+TGG - chr5_3:7280870-7280889 None:intergenic 55.0%
CAAACAGGTGATTGCACCGG+TGG + chr5_3:7280868-7280887 Msa0795330:CDS 55.0%
! ACCGGTGGACTCCAATGTAC+TGG + chr5_3:7280883-7280902 Msa0795330:CDS 55.0%
GGACACCCCAACCAGTACAT+TGG - chr5_3:7280897-7280916 None:intergenic 55.0%
AAGTGGGTCCACAGCTTCCT+TGG - chr5_3:7281158-7281177 None:intergenic 55.0%
GCAGCTGCCCAAACGGTGTA+AGG - chr5_3:7280718-7280737 None:intergenic 60.0%
!! TGGGCTAGCAGCTGCCCAAA+CGG - chr5_3:7280725-7280744 None:intergenic 60.0%
ATGTTTGACCGCGGTCGAGG+CGG - chr5_3:7280759-7280778 None:intergenic 60.0%
TCCATGTTTGACCGCGGTCG+AGG - chr5_3:7280762-7280781 None:intergenic 60.0%
ATACGAGCCATGGCGGTACC+AGG - chr5_3:7280799-7280818 None:intergenic 60.0%
GCGACCCCAAATACGAGCCA+TGG - chr5_3:7280809-7280828 None:intergenic 60.0%
! GCTCGTATTTGGGGTCGCAC+CGG + chr5_3:7280811-7280830 Msa0795330:CDS 60.0%
GTTTGGGCAGCTGCTAGCCC+AGG + chr5_3:7280724-7280743 Msa0795330:CDS 65.0%
GCCTCGACCGCGGTCAAACA+TGG + chr5_3:7280758-7280777 Msa0795330:CDS 65.0%
GGTCGTGGCCGTTGCCAAAC+AGG + chr5_3:7280853-7280872 Msa0795330:CDS 65.0%
TGGGCAGCTGCTAGCCCAGG+CGG + chr5_3:7280727-7280746 Msa0795330:CDS 70.0%
GCAGCTGCTAGCCCAGGCGG+TGG + chr5_3:7280730-7280749 Msa0795330:CDS 75.0%
! CGAGGCGGCGACCACCGCCT+GGG - chr5_3:7280744-7280763 None:intergenic 80.0%
! TCGAGGCGGCGACCACCGCC+TGG - chr5_3:7280745-7280764 None:intergenic 80.0%
! GGTGGTCGCCGCCTCGACCG+CGG + chr5_3:7280748-7280767 Msa0795330:CDS 80.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7280619 7281344 7280619 ID=Msa0795330;Name=Msa0795330
chr5_3 mRNA 7280619 7281344 7280619 ID=Msa0795330-mRNA-1;Parent=Msa0795330;Name=Msa0795330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|241
chr5_3 exon 7280619 7281344 7280619 ID=Msa0795330-mRNA-1:exon:2944;Parent=Msa0795330-mRNA-1
chr5_3 CDS 7280619 7281344 7280619 ID=Msa0795330-mRNA-1:cds;Parent=Msa0795330-mRNA-1
Gene Sequence

>Msa0795330

ATGACTTTCATATCAATCCTCACATTCACACTATGCTCCCTACTACTCACCCTCACTCCTTCACAAGCAGCCAACTTTGAGATCGTCAACAATTGCCCTTACACCGTTTGGGCAGCTGCTAGCCCAGGCGGTGGTCGCCGCCTCGACCGCGGTCAAACATGGAACCTCTGGGTTAATCCTGGTACCGCCATGGCTCGTATTTGGGGTCGCACCGGTTGCAACTTTGATGGCAGCGGTCGTGGCCGTTGCCAAACAGGTGATTGCACCGGTGGACTCCAATGTACTGGTTGGGGTGTCCCACCAAACACATTAGCCGAATATGCGTTAAACCAATTCGGAAATCAAGATTTCTACGACATCTCACTTGTCGATGGTTTCAACATCCCAATGGATTTCTTCCCTCTTAATGGTGGATGCCACAAAATCAGTTGCACTGCCGATATTAACGGACAGTGCCCTAAAGAATTGAGGACTCAAGGTGGTTGTAACAACCCTTGTACAGTTTTTAAGACCAATGAATATTGTTGCACTAATGGCCAAGGAAGCTGTGGACCCACTTATTTCTCAAGGTTTTTTAAGGATAGGTGTCATGATTCATACAGTTACCCTCAAGATGATCCAACAAGTACTTTCACTTGTCCTGCTGGATCTAACTACAAAGTTGTTTTCTGTCCTCTTGGAGCTCCTCATATTGAGATGCCACTAAACCAGACCAGTGTGTATTGA

Protein sequence

>Msa0795330

MTFISILTFTLCSLLLTLTPSQAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLWVNPGTAMARIWGRTGCNFDGSGRGRCQTGDCTGGLQCTGWGVPPNTLAEYALNQFGNQDFYDISLVDGFNIPMDFFPLNGGCHKISCTADINGQCPKELRTQGGCNNPCTVFKTNEYCCTNGQGSCGPTYFSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGAPHIEMPLNQTSVY*