AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1174450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174450 MtrunA17_Chr8g0344241 94.208 259 15 0 200 458 203 461 1.43e-179 510
Msa1174450 MtrunA17_Chr8g0344241 61.947 113 25 5 138 244 8 108 4.66e-28 115
Msa1174450 MtrunA17_Chr8g0344211 95.367 259 12 0 200 458 610 868 1.00e-176 517
Msa1174450 MtrunA17_Chr8g0344211 100.000 92 0 0 116 207 271 362 3.10e-53 191
Msa1174450 MtrunA17_Chr8g0342971 84.170 259 41 0 200 458 612 870 9.09e-158 468
Msa1174450 MtrunA17_Chr8g0342971 77.174 92 21 0 116 207 273 364 7.12e-41 155
Msa1174450 MtrunA17_Chr8g0342951 83.784 259 42 0 200 458 610 868 3.22e-154 459
Msa1174450 MtrunA17_Chr8g0342951 82.609 92 16 0 116 207 271 362 2.92e-43 162
Msa1174450 MtrunA17_Chr8g0343011 83.333 252 42 0 207 458 614 865 2.24e-150 449
Msa1174450 MtrunA17_Chr8g0343011 62.264 106 30 3 103 207 263 359 3.93e-32 130
Msa1174450 MtrunA17_Chr8g0342891 81.349 252 47 0 207 458 610 861 7.30e-149 445
Msa1174450 MtrunA17_Chr8g0342891 72.826 92 25 0 116 207 264 355 1.31e-38 149
Msa1174450 MtrunA17_Chr8g0342901 80.952 252 48 0 207 458 577 828 1.17e-147 441
Msa1174450 MtrunA17_Chr8g0342931 79.365 252 52 0 207 458 499 750 6.75e-146 434
Msa1174450 MtrunA17_Chr8g0342931 75.000 92 23 0 116 207 153 244 2.94e-38 147
Msa1174450 MtrunA17_Chr8g0342921 79.762 252 51 0 207 458 618 869 8.18e-146 437
Msa1174450 MtrunA17_Chr8g0342921 73.913 92 24 0 116 207 272 363 1.17e-39 152
Msa1174450 MtrunA17_Chr8g0343001 74.903 259 65 0 200 458 549 807 2.23e-140 422
Msa1174450 MtrunA17_Chr8g0342991 75.290 259 63 1 200 458 550 807 2.61e-138 416
Msa1174450 MtrunA17_Chr8g0342981 72.619 252 68 1 207 458 573 823 2.72e-125 383
Msa1174450 MtrunA17_Chr2g0329911 67.181 259 84 1 200 458 604 861 5.15e-119 368
Msa1174450 MtrunA17_Chr2g0329911 60.215 93 36 1 116 207 264 356 1.29e-28 119
Msa1174450 MtrunA17_Chr8g0342881 64.479 259 92 0 200 458 598 856 1.73e-116 361
Msa1174450 MtrunA17_Chr8g0342881 60.870 92 36 0 116 207 259 350 7.41e-29 120
Msa1174450 MtrunA17_Chr2g0329901 63.707 259 93 1 200 458 606 863 1.51e-113 353
Msa1174450 MtrunA17_Chr2g0329901 54.464 112 46 3 101 207 249 360 3.06e-28 118
Msa1174450 MtrunA17_Chr5g0406871 62.548 259 96 1 200 458 610 867 3.49e-111 347
Msa1174450 MtrunA17_Chr5g0406871 42.568 148 80 3 65 207 216 363 6.97e-27 114
Msa1174450 MtrunA17_Chr3g0120071 60.618 259 101 1 200 458 601 858 6.02e-111 347
Msa1174450 MtrunA17_Chr3g0120071 53.763 93 40 1 116 208 264 353 1.38e-25 110
Msa1174450 MtrunA17_Chr8g0343021 62.162 259 97 1 200 458 607 864 9.13e-111 346
Msa1174450 MtrunA17_Chr8g0343021 49.600 125 58 3 88 207 236 360 5.27e-28 117
Msa1174450 MtrunA17_Chr8g0343031 62.162 259 97 1 200 458 608 865 7.04e-110 344
Msa1174450 MtrunA17_Chr8g0343031 51.200 125 56 3 88 207 237 361 3.58e-29 121
Msa1174450 MtrunA17_Chr7g0272791 60.232 259 102 1 200 458 610 867 5.69e-107 337
Msa1174450 MtrunA17_Chr7g0272791 41.053 95 51 2 116 207 270 362 4.53e-15 77.8
Msa1174450 MtrunA17_Chr1g0205611 55.642 257 108 2 207 458 601 856 4.02e-100 318
Msa1174450 MtrunA17_Chr1g0205611 44.330 97 48 2 116 208 253 347 2.76e-17 84.7
Msa1174450 MtrunA17_Chr1g0191921 59.073 259 105 1 200 458 601 858 2.35e-99 316
Msa1174450 MtrunA17_Chr1g0191921 45.745 94 46 2 116 206 261 352 2.73e-15 78.6
Msa1174450 MtrunA17_Chr8g0344201 44.118 272 149 1 186 457 658 926 1.36e-77 259
Msa1174450 MtrunA17_Chr8g0344251 97.391 115 3 0 1 115 15 129 2.05e-75 232
Msa1174450 MtrunA17_Chr4g0033171 45.136 257 137 3 205 458 470 725 2.41e-71 239
Msa1174450 MtrunA17_Chr8g0377101 40.511 274 159 2 186 458 646 916 2.38e-69 237
Msa1174450 MtrunA17_Chr3g0118641 41.091 275 156 3 186 458 632 902 1.29e-65 226
Msa1174450 MtrunA17_Chr3g0118651 43.307 254 141 2 207 458 651 903 1.81e-65 226
Msa1174450 MtrunA17_Chr4g0047281 39.796 294 170 3 167 457 605 894 1.84e-65 226
Msa1174450 MtrunA17_Chr8g0338451 40.693 231 136 1 212 441 620 850 5.14e-56 199
Msa1174450 MtrunA17_Chr3g0118621 42.146 261 148 2 200 458 606 865 1.24e-53 192
Msa1174450 MtrunA17_Chr6g0471951 35.636 275 157 7 153 413 206 474 9.56e-48 171
Msa1174450 MtrunA17_Chr4g0047271 38.462 91 56 0 367 457 1 91 1.23e-16 75.1
Msa1174450 MtrunA17_Chr3g0137991 34.400 125 66 3 334 458 1 109 1.04e-13 67.4
Msa1174450 MtrunA17_Chr7g0272781 42.857 63 35 1 350 412 8 69 8.53e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1174450 AT3G22400.1 56.061 264 110 2 200 458 624 886 1.99e-99 317
Msa1174450 AT3G22400.1 43.750 96 48 2 116 207 283 376 1.30e-15 80.1
Msa1174450 AT1G55020.1 56.746 252 108 1 207 458 609 859 1.07e-98 315
Msa1174450 AT1G55020.1 43.750 96 48 2 116 207 261 354 4.39e-16 81.6
Msa1174450 AT1G72520.1 42.857 273 153 1 186 458 657 926 1.92e-74 251
Msa1174450 AT1G17420.1 42.857 273 153 1 186 458 650 919 1.72e-72 246
Msa1174450 AT1G67560.1 41.606 274 156 2 186 458 647 917 1.48e-65 227
Msa1174450 AT3G45140.2 39.928 278 157 4 185 458 483 754 5.23e-61 212
Msa1174450 AT3G45140.1 39.928 278 157 4 185 458 625 896 1.79e-60 212
Msa1174450 AT3G14060.1 42.478 113 61 3 4 115 16 125 4.72e-17 77.8
Msa1174450 AT1G54120.1 44.186 86 45 3 19 101 28 113 7.01e-16 74.3

Find 104 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATGCAGCTGTTAATTT+TGG 0.155837 8_1:-5542562 Msa1174450:CDS
ATTCTGAACTCCAAGCATTT+TGG 0.213611 8_1:-5542702 Msa1174450:CDS
AACCTTCCGCCGTCTGAATA+TGG 0.240508 8_1:+5546002 None:intergenic
AACTTCTTGTAGGCCTGTTT+TGG 0.254785 8_1:+5542292 None:intergenic
TTGAAGTCATCTGACTTTCT+TGG 0.278006 8_1:-5543904 Msa1174450:CDS
CAAAAGTGCTTTCCATAAAA+AGG 0.284199 8_1:+5545785 None:intergenic
GCATAGTTAGAATGTTTAAA+AGG 0.289065 8_1:-5545930 Msa1174450:CDS
TATATACCTTGAACCACTTT+AGG 0.295558 8_1:+5543661 None:intergenic
AAGCTTGCACCATTCTAATA+TGG 0.296433 8_1:-5542597 Msa1174450:CDS
CTTCTTTCCAAACTTCTTGT+AGG 0.296818 8_1:+5542282 None:intergenic
GGCTTAAGTTACAATATCTT+AGG 0.307785 8_1:-5545894 Msa1174450:CDS
AAACCACGGCGGAGATTAAT+TGG 0.312099 8_1:-5545955 Msa1174450:CDS
GTTCTTTGAACAACGGTATT+GGG 0.323229 8_1:+5543725 None:intergenic
CTTCAGACGGACTAGAGATA+TGG 0.342337 8_1:-5542795 Msa1174450:CDS
AGTTCTTTGAACAACGGTAT+TGG 0.344989 8_1:+5543724 None:intergenic
ACAACGGTATTGGGCTAATC+TGG 0.354078 8_1:+5543734 None:intergenic
TCTACTTATCCTTCTCGGTT+TGG 0.359316 8_1:-5545739 Msa1174450:CDS
GTAGGATAAAGCAGAGTATA+TGG 0.362111 8_1:+5542181 None:intergenic
AAACAGGCCTACAAGAAGTT+TGG 0.372935 8_1:-5542289 Msa1174450:CDS
ATTTAGAGGAGTGGCAGTTC+AGG 0.377653 8_1:-5542869 Msa1174450:intron
AGGTGGGTCATGGTGACTTT+AGG 0.378805 8_1:-5542666 Msa1174450:CDS
AGAGAATCGAAGGCGATCTC+TGG 0.382540 8_1:-5542330 Msa1174450:CDS
ACTTATCTACTTATCCTTCT+CGG 0.384698 8_1:-5545744 Msa1174450:CDS
GTTCCAAGAGATGAATCATT+TGG 0.391467 8_1:-5543931 Msa1174450:intron
CCTTGACAAGACCTCTAAAA+TGG 0.394691 8_1:+5542381 None:intergenic
TTCTGATTCACAGCCAAAAC+AGG 0.396436 8_1:-5542305 Msa1174450:CDS
CAAGTTCTTTCCAAAATGCT+TGG 0.406902 8_1:+5542692 None:intergenic
TTGTCCTCAAATAAGTCTTC+TGG 0.407224 8_1:+5542437 None:intergenic
GTAGCTTTAGATCTCAAATT+CGG 0.426348 8_1:+5543847 None:intergenic
TAGGTTATTGAAACGGCTTA+AGG 0.428816 8_1:-5545875 Msa1174450:CDS
GACACTGTTGGGAATGCCTC+TGG 0.441705 8_1:+5542138 None:intergenic
AGAGTATATGGCACCTTCAC+AGG 0.447713 8_1:+5542193 None:intergenic
CAAGAAGTTTGGAAAGAAGT+TGG 0.456294 8_1:-5542278 Msa1174450:CDS
TAAGTTTCCACCACCTAAAG+TGG 0.469195 8_1:-5543674 Msa1174450:CDS
GAGACACTAAGGAATCGAAA+TGG 0.470257 8_1:-5542217 Msa1174450:CDS
CCACCACCTAAAGTGGTTCA+AGG 0.472852 8_1:-5543667 Msa1174450:intron
TCTTCAAAGGTGTTAAACTC+AGG 0.476777 8_1:+5543808 None:intergenic
CTCTGCTTTATCCTACTAGT+GGG 0.492357 8_1:-5542174 Msa1174450:CDS
GAATATGGAGACCTTGCGGC+GGG 0.492635 8_1:+5546017 None:intergenic
TCTAGTCCGTCTGAAGCATA+AGG 0.501705 8_1:+5542802 None:intergenic
TACTCAACAGATCCTTTCTC+AGG 0.503501 8_1:+5542481 None:intergenic
CGAACACCATGTGGAGAAGC+TGG 0.506062 8_1:+5542844 None:intergenic
GCGGGGCTGCCATGTTGTCA+TGG 0.506143 8_1:+5546035 None:intergenic
AATATCTTAGGTTATTGAAA+CGG 0.511068 8_1:-5545882 Msa1174450:CDS
CTTGATAATTTACATGAAGA+GGG 0.523231 8_1:+5545699 None:intergenic
AGTAAGAGTATCATTCTTTG+CGG 0.524801 8_1:+5542411 None:intergenic
TTCAGACGGACTAGAGATAT+GGG 0.525879 8_1:-5542794 Msa1174450:CDS
AGAAGATTCATGCCTGAGAA+AGG 0.525970 8_1:-5542493 Msa1174450:CDS
ACTTGATAATTTACATGAAG+AGG 0.529374 8_1:+5545698 None:intergenic
TTGGAAAGAACTTGTAGAGG+TGG 0.530830 8_1:-5542683 Msa1174450:CDS
CCTTGAACCACTTTAGGTGG+TGG 0.532735 8_1:+5543667 None:intergenic
GTGAAAGATCTTATTGAAGC+TGG 0.539200 8_1:-5545835 Msa1174450:CDS
ATTTACATGAAGAGGGTTCG+AGG 0.539387 8_1:+5545706 None:intergenic
GTCAATCCTTCCCCACTAGT+AGG 0.539688 8_1:+5542163 None:intergenic
TGGAAAGAACTTGTAGAGGT+GGG 0.541949 8_1:-5542682 Msa1174450:CDS
CTTTATCCTACTAGTGGGGA+AGG 0.544538 8_1:-5542169 Msa1174450:CDS
CTTCAAAGGTGTTAAACTCA+GGG 0.545165 8_1:+5543809 None:intergenic
CATCATTGTTCCTTTGAACG+AGG 0.545950 8_1:+5542239 None:intergenic
GCGTTGTTGAAAAGTTTCAA+TGG 0.549801 8_1:+5545807 None:intergenic
TATGGGCTGCTATTAAGTCA+TGG 0.554200 8_1:-5542777 Msa1174450:CDS
GTTTAAGATGCAAACTCGTA+CGG 0.554784 8_1:-5542629 Msa1174450:CDS
TGAAGAAATCCATATTAGAA+TGG 0.555267 8_1:+5542588 None:intergenic
CTCCATATTCAGACGGCGGA+AGG 0.556606 8_1:-5546004 Msa1174450:CDS
GCTTCTGATGAACAATACCT+TGG 0.559094 8_1:-5542355 Msa1174450:CDS
CGCCTTCGATTCTCTCTCCA+AGG 0.560317 8_1:+5542338 None:intergenic
GGAACAATGATGAGACACTA+AGG 0.560598 8_1:-5542228 Msa1174450:CDS
TTAAAAGGATGCGTGTAAAG+TGG 0.560887 8_1:-5545915 Msa1174450:CDS
CAGGATCCAGCTTCTCCACA+TGG 0.561207 8_1:-5542850 Msa1174450:CDS
TGGTGTTCGACTTCTGATAG+AGG 0.563270 8_1:-5542830 Msa1174450:CDS
ATGGGCTGCTATTAAGTCAT+GGG 0.567374 8_1:-5542776 Msa1174450:CDS
AAGGTTCAAACGGTGAGGCT+AGG 0.576644 8_1:-5545985 Msa1174450:CDS
ACTACCAGAAGACTTATTTG+AGG 0.580355 8_1:-5542441 Msa1174450:CDS
GAATCGAAATGGACCTGTGA+AGG 0.580490 8_1:-5542206 Msa1174450:CDS
ACTCTGCTTTATCCTACTAG+TGG 0.581194 8_1:-5542175 Msa1174450:CDS
GAGAGAGCGTATATCTTCAA+AGG 0.581939 8_1:+5543795 None:intergenic
ATACCTTGAACCACTTTAGG+TGG 0.590734 8_1:+5543664 None:intergenic
GACTATCCTTATGCTTCAGA+CGG 0.590816 8_1:-5542808 Msa1174450:CDS
GAACTTGTAGAGGTGGGTCA+TGG 0.590953 8_1:-5542676 Msa1174450:CDS
TACCTTGGAGAGAGAATCGA+AGG 0.592874 8_1:-5542340 Msa1174450:CDS
CAGACGGCGGAAGGTTCAAA+CGG 0.612212 8_1:-5545995 Msa1174450:CDS
TAATCTGAACCAAACCGAGA+AGG 0.614730 8_1:+5545730 None:intergenic
TTTGGACAATATGCGTATGG+AGG 0.620897 8_1:-5542544 Msa1174450:CDS
ATACGCTCTCTCTACGATGG+TGG 0.622802 8_1:-5543784 Msa1174450:CDS
CCACCACCACCATGACAACA+TGG 0.623806 8_1:-5546044 None:intergenic
TGAGTATGATGAGCTTGCTA+AGG 0.630344 8_1:-5542464 Msa1174450:CDS
ATCTGGCTTAGTACATCAGT+AGG 0.631513 8_1:+5543751 None:intergenic
CCACGGCGGAGATTAATTGG+TGG 0.631671 8_1:-5545952 Msa1174450:CDS
ATCAGAAGTCGAACACCATG+TGG 0.634779 8_1:+5542835 None:intergenic
GGGGAAGGATTGACTTCCAG+AGG 0.639868 8_1:-5542154 Msa1174450:CDS
TGAATATGGAGACCTTGCGG+CGG 0.640070 8_1:+5546016 None:intergenic
TAGATAAGTTAACACCAAGA+GGG 0.640424 8_1:+5545758 None:intergenic
GTAGATAAGTTAACACCAAG+AGG 0.647293 8_1:+5545757 None:intergenic
CCACCAATTAATCTCCGCCG+TGG 0.651481 8_1:+5545952 None:intergenic
GCAAGGTCTCCATATTCAGA+CGG 0.653088 8_1:-5546011 Msa1174450:CDS
GGCTAGGTAGCAAGAAACCA+CGG 0.666237 8_1:-5545969 Msa1174450:CDS
GTCTGAATATGGAGACCTTG+CGG 0.668375 8_1:+5546013 None:intergenic
GGCGGAAGGTTCAAACGGTG+AGG 0.671562 8_1:-5545990 Msa1174450:CDS
GATATACGCTCTCTCTACGA+TGG 0.675831 8_1:-5543787 Msa1174450:CDS
ACTTTAGGAATGCAACATGG+TGG 0.698879 8_1:-5542651 Msa1174450:CDS
AATATGGAGACCTTGCGGCG+GGG 0.701594 8_1:+5546018 None:intergenic
TCTGCTTTATCCTACTAGTG+GGG 0.710796 8_1:-5542173 Msa1174450:CDS
AGGTCTCCATATTCAGACGG+CGG 0.717616 8_1:-5546008 Msa1174450:CDS
GTGACTTTAGGAATGCAACA+TGG 0.726875 8_1:-5542654 Msa1174450:CDS
TAGGTAGCAAGAAACCACGG+CGG 0.844201 8_1:-5545966 Msa1174450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATTTTATAATAAAGAAAA+AGG + chr8_1:5542564-5542583 None:intergenic 10.0%
!! TTATGATTAAAGTTAAAAAT+TGG - chr8_1:5543226-5543245 Msa1174450:intron 10.0%
!! GAAAAAATAAAAGCAATAAA+AGG + chr8_1:5542595-5542614 None:intergenic 15.0%
!! GAAATGTAAAAACAAAAAAA+AGG + chr8_1:5542705-5542724 None:intergenic 15.0%
!!! AATTTTTATCTTTCATTTCT+AGG - chr8_1:5542793-5542812 Msa1174450:CDS 15.0%
!! ATTAAAGTTAAAAATTGGTT+AGG - chr8_1:5543231-5543250 Msa1174450:intron 15.0%
!! TTAAAGTTAAAAATTGGTTA+GGG - chr8_1:5543232-5543251 Msa1174450:intron 15.0%
!! CAAATAAACCAAAAAAAAAA+AGG - chr8_1:5544095-5544114 Msa1174450:intron 15.0%
!!! TCAATATCTTTTTAGAAAAA+TGG + chr8_1:5545017-5545036 None:intergenic 15.0%
!!! ACTAACTTTTATATTTCTAT+TGG - chr8_1:5545135-5545154 Msa1174450:intron 15.0%
!! CAATATTACAAAAACAAAAT+TGG + chr8_1:5545241-5545260 None:intergenic 15.0%
!! AATATCTTAGGTTATTGAAA+CGG - chr8_1:5542280-5542299 Msa1174450:CDS 20.0%
!! AAGAAAAAGGAAAGAAAATA+AGG + chr8_1:5542551-5542570 None:intergenic 20.0%
!! ACCTAAAATTAAAATCACAA+GGG + chr8_1:5542620-5542639 None:intergenic 20.0%
!! TACCTAAAATTAAAATCACA+AGG + chr8_1:5542621-5542640 None:intergenic 20.0%
!!! TTAATTTTAGGTAAATTGTG+AGG - chr8_1:5542628-5542647 Msa1174450:CDS 20.0%
!!! TAATTTTAGGTAAATTGTGA+GGG - chr8_1:5542629-5542648 Msa1174450:CDS 20.0%
!!! TATGAATGTTCTTGTTTATT+GGG - chr8_1:5542676-5542695 Msa1174450:CDS 20.0%
!! AGATAAAATTTATACCGTTT+AGG - chr8_1:5542967-5542986 Msa1174450:intron 20.0%
!! TTAATACCCAAAATGAATTA+TGG - chr8_1:5543182-5543201 Msa1174450:intron 20.0%
!! TAATACCCAAAATGAATTAT+GGG - chr8_1:5543183-5543202 Msa1174450:intron 20.0%
!!! TTTTTCCCATAATTCATTTT+GGG + chr8_1:5543191-5543210 None:intergenic 20.0%
!!! ATTTTTCCCATAATTCATTT+TGG + chr8_1:5543192-5543211 None:intergenic 20.0%
!! AGTTTGAACAATTACAAAAA+TGG + chr8_1:5543567-5543586 None:intergenic 20.0%
!! TTTATTGTATTGTTATCACT+TGG + chr8_1:5543729-5543748 None:intergenic 20.0%
!!! CTTAATTTTGAAATGGAATT+TGG + chr8_1:5544054-5544073 None:intergenic 20.0%
!!! CCTCACTTAATTTATTTTTA+GGG + chr8_1:5544544-5544563 None:intergenic 20.0%
!! CCTAAAAATAAATTAAGTGA+GGG - chr8_1:5544542-5544561 Msa1174450:intron 20.0%
!! ATTAATGAAATTCATACCAA+TGG + chr8_1:5544621-5544640 None:intergenic 20.0%
!! GAAGTAAAAGTTTATGAATA+GGG + chr8_1:5544786-5544805 None:intergenic 20.0%
!!! TATCTTTTGATTAGATCATT+AGG + chr8_1:5544964-5544983 None:intergenic 20.0%
!!! ATATTTTTGTAATGTTCATG+AGG - chr8_1:5545045-5545064 Msa1174450:intron 20.0%
!!! TTAGTTAGAGTTTGTTATTA+GGG + chr8_1:5545120-5545139 None:intergenic 20.0%
! GCATAGTTAGAATGTTTAAA+AGG - chr8_1:5542232-5542251 Msa1174450:CDS 25.0%
!! CTTGATAATTTACATGAAGA+GGG + chr8_1:5542466-5542485 None:intergenic 25.0%
!! ACTTGATAATTTACATGAAG+AGG + chr8_1:5542467-5542486 None:intergenic 25.0%
! TGCATGTATATAAGAAGAAA+AGG - chr8_1:5542513-5542532 Msa1174450:CDS 25.0%
! CCTAAAATTAAAATCACAAG+GGG + chr8_1:5542619-5542638 None:intergenic 25.0%
!! CTATGAATGTTCTTGTTTAT+TGG - chr8_1:5542675-5542694 Msa1174450:CDS 25.0%
!!! TAGGTTCAAGTTTGTTTTTA+TGG - chr8_1:5542812-5542831 Msa1174450:CDS 25.0%
!!! AGGTTCAAGTTTGTTTTTAT+GGG - chr8_1:5542813-5542832 Msa1174450:CDS 25.0%
! TCTTTGTGAGAAAACAATAT+AGG - chr8_1:5542844-5542863 Msa1174450:CDS 25.0%
!! GCAAGTAGATTTTATTACTT+TGG - chr8_1:5542916-5542935 Msa1174450:intron 25.0%
!! TTTTATTACTTTGGCTAGAT+AGG - chr8_1:5542925-5542944 Msa1174450:intron 25.0%
!! GAGTCTAAGCATTATATTTT+TGG - chr8_1:5543079-5543098 Msa1174450:intron 25.0%
!! TCTTTTCACGTTAACATTAA+TGG - chr8_1:5543148-5543167 Msa1174450:intron 25.0%
!! CTTTTCACGTTAACATTAAT+GGG - chr8_1:5543149-5543168 Msa1174450:intron 25.0%
! TTCAATGTTGAAGCTAATAA+TGG - chr8_1:5543434-5543453 Msa1174450:intron 25.0%
! TCAATGTTGAAGCTAATAAT+GGG - chr8_1:5543435-5543454 Msa1174450:intron 25.0%
!! TTTTGTAATTGTTCAAACTC+AGG - chr8_1:5543568-5543587 Msa1174450:intron 25.0%
!!! TTTCTCACTCACTTTTTATT+AGG - chr8_1:5543626-5543645 Msa1174450:intron 25.0%
!! TTGGTTATTTCAAATGGTAT+AGG + chr8_1:5543710-5543729 None:intergenic 25.0%
!! TATCACTTGGTTATTTCAAA+TGG + chr8_1:5543716-5543735 None:intergenic 25.0%
! AGTAATTGTGTTAATTGTGT+TGG - chr8_1:5544152-5544171 Msa1174450:intron 25.0%
! CCCTAAAAATAAATTAAGTG+AGG - chr8_1:5544541-5544560 Msa1174450:intron 25.0%
!!! CCCTCACTTAATTTATTTTT+AGG + chr8_1:5544545-5544564 None:intergenic 25.0%
! TATATATCTCAATGTTTGAC+AGG - chr8_1:5544695-5544714 Msa1174450:intron 25.0%
! GGAAGTAAAAGTTTATGAAT+AGG + chr8_1:5544787-5544806 None:intergenic 25.0%
! AATTTATGTTCATTGTGTCA+CGG + chr8_1:5544816-5544835 None:intergenic 25.0%
! TTATGGAATTAACTTTCTTG+TGG - chr8_1:5544872-5544891 Msa1174450:intron 25.0%
! TATGGAATTAACTTTCTTGT+GGG - chr8_1:5544873-5544892 Msa1174450:intron 25.0%
!!! GTTAGTTAGAGTTTGTTATT+AGG + chr8_1:5545121-5545140 None:intergenic 25.0%
!!! TCATTTTACTACTGTTTTAG+AGG + chr8_1:5545175-5545194 None:intergenic 25.0%
! ACAAAAACAAAATTGGAGAA+GGG + chr8_1:5545234-5545253 None:intergenic 25.0%
! TACAAAAACAAAATTGGAGA+AGG + chr8_1:5545235-5545254 None:intergenic 25.0%
! TGAAGAAATCCATATTAGAA+TGG + chr8_1:5545577-5545596 None:intergenic 25.0%
!!! ATGAATCTTCTACTTTTTGT+TGG + chr8_1:5545660-5545679 None:intergenic 25.0%
GGCTTAAGTTACAATATCTT+AGG - chr8_1:5542268-5542287 Msa1174450:CDS 30.0%
! TTTTCAACAACGCCTTTTTA+TGG - chr8_1:5542365-5542384 Msa1174450:CDS 30.0%
!! CAAAAGTGCTTTCCATAAAA+AGG + chr8_1:5542380-5542399 None:intergenic 30.0%
TAGATAAGTTAACACCAAGA+GGG + chr8_1:5542407-5542426 None:intergenic 30.0%
ACTTATCTACTTATCCTTCT+CGG - chr8_1:5542418-5542437 Msa1174450:CDS 30.0%
!!! CCCCTTGTGATTTTAATTTT+AGG - chr8_1:5542616-5542635 Msa1174450:CDS 30.0%
!! ATTGTGAGGGAGTTATTTTA+AGG - chr8_1:5542642-5542661 Msa1174450:CDS 30.0%
!!! TTGTGAGGGAGTTATTTTAA+GGG - chr8_1:5542643-5542662 Msa1174450:CDS 30.0%
CTGAGAGGTGAAAAAATATA+TGG + chr8_1:5542744-5542763 None:intergenic 30.0%
TCAGTCTCTAATATTGTTCA+TGG - chr8_1:5542760-5542779 Msa1174450:CDS 30.0%
! CATATTTTTCATACTGCAGA+TGG + chr8_1:5542895-5542914 None:intergenic 30.0%
AGATAGGAGATATTCTTGTA+TGG - chr8_1:5542941-5542960 Msa1174450:intron 30.0%
TATCTTATTGTGTGCCTAAA+CGG + chr8_1:5542984-5543003 None:intergenic 30.0%
AAGTTAAAAATTGGTTAGGG+AGG - chr8_1:5543235-5543254 Msa1174450:intron 30.0%
GTGAGTCAATATTTGTTTGA+TGG - chr8_1:5543309-5543328 Msa1174450:intron 30.0%
CTATACGTAAGTTTCAATTC+TGG - chr8_1:5543373-5543392 Msa1174450:intron 30.0%
! GTGCATTTGATCAATTTTGA+AGG + chr8_1:5543773-5543792 None:intergenic 30.0%
CTAATTTCAGATAGGTAGTT+TGG + chr8_1:5543795-5543814 None:intergenic 30.0%
GTGTCTTTCTAATTTCAGAT+AGG + chr8_1:5543803-5543822 None:intergenic 30.0%
ATTAGAAAGACACACAACAT+AGG - chr8_1:5543810-5543829 Msa1174450:CDS 30.0%
!! AATAAGTTGATTCCCCTAAA+AGG - chr8_1:5544003-5544022 Msa1174450:intron 30.0%
! AGAGAAGTCTAATCCTTTTA+GGG + chr8_1:5544019-5544038 None:intergenic 30.0%
! TAGAGAAGTCTAATCCTTTT+AGG + chr8_1:5544020-5544039 None:intergenic 30.0%
TGAAATGGAATTTGGATCTT+TGG + chr8_1:5544046-5544065 None:intergenic 30.0%
!! CAGCTGTCTTAATTTTGAAA+TGG + chr8_1:5544061-5544080 None:intergenic 30.0%
!! ACCAAAAAAAAAAAGGCACT+AGG - chr8_1:5544102-5544121 Msa1174450:intron 30.0%
!! CCAAAAAAAAAAAGGCACTA+GGG - chr8_1:5544103-5544122 Msa1174450:intron 30.0%
!! GTAGCTTTAGATCTCAAATT+CGG + chr8_1:5544318-5544337 None:intergenic 30.0%
CGAAAAAGTTCTTTGAACAA+CGG + chr8_1:5544447-5544466 None:intergenic 30.0%
!!! AAAGAACTTTTTCGAACTGA+TGG - chr8_1:5544453-5544472 Msa1174450:intron 30.0%
TATATACCTTGAACCACTTT+AGG + chr8_1:5544504-5544523 None:intergenic 30.0%
AAGTGGTTCAAGGTATATAT+TGG - chr8_1:5544505-5544524 Msa1174450:intron 30.0%
! CTATTTGTTGCTATGATGAA+TGG + chr8_1:5544745-5544764 None:intergenic 30.0%
CATTCATCATAGCAACAAAT+AGG - chr8_1:5544743-5544762 Msa1174450:intron 30.0%
ATGGAATTAACTTTCTTGTG+GGG - chr8_1:5544874-5544893 Msa1174450:intron 30.0%
CTTACAAAACCTTACATCTT+GGG - chr8_1:5544986-5545005 Msa1174450:intron 30.0%
!! ATTTTGGAAAGAACTTGTAG+AGG - chr8_1:5545476-5545495 Msa1174450:intron 30.0%
! AATTTTGGACAATATGCGTA+TGG - chr8_1:5545615-5545634 Msa1174450:intron 30.0%
!!! ATCTTCTACTTTTTGTTGGT+CGG + chr8_1:5545656-5545675 None:intergenic 30.0%
!! AGTAAGAGTATCATTCTTTG+CGG + chr8_1:5545754-5545773 None:intergenic 30.0%
! TACTAACTTGACCATTTTAG+AGG - chr8_1:5545770-5545789 Msa1174450:CDS 30.0%
TTAAAAGGATGCGTGTAAAG+TGG - chr8_1:5542247-5542266 Msa1174450:CDS 35.0%
TAGGTTATTGAAACGGCTTA+AGG - chr8_1:5542287-5542306 Msa1174450:CDS 35.0%
GTGAAAGATCTTATTGAAGC+TGG - chr8_1:5542327-5542346 Msa1174450:CDS 35.0%
GCGTTGTTGAAAAGTTTCAA+TGG + chr8_1:5542358-5542377 None:intergenic 35.0%
GTAGATAAGTTAACACCAAG+AGG + chr8_1:5542408-5542427 None:intergenic 35.0%
!!! TGTGAGGGAGTTATTTTAAG+GGG - chr8_1:5542644-5542663 Msa1174450:CDS 35.0%
GAACAATATTAGAGACTGAG+AGG + chr8_1:5542759-5542778 None:intergenic 35.0%
!! GAATAGACTTCTGGTCTTAT+TGG - chr8_1:5543281-5543300 Msa1174450:intron 35.0%
CGTGATTGTGACACTAAAAT+CGG - chr8_1:5543411-5543430 Msa1174450:intron 35.0%
! AATGCTGAAGCAGTTTTCAT+TGG + chr8_1:5543473-5543492 None:intergenic 35.0%
ATAAACTGAGAAAGCCATGT+TGG - chr8_1:5543865-5543884 Msa1174450:CDS 35.0%
TAAACTGAGAAAGCCATGTT+GGG - chr8_1:5543866-5543885 Msa1174450:CDS 35.0%
!!! ACTTATTTTTCGAGTCGTCT+TGG + chr8_1:5543990-5544009 None:intergenic 35.0%
! GAGAAGTCTAATCCTTTTAG+GGG + chr8_1:5544018-5544037 None:intergenic 35.0%
!!! CCCTAGTGCCTTTTTTTTTT+TGG + chr8_1:5544106-5544125 None:intergenic 35.0%
GTTCCAAGAGATGAATCATT+TGG - chr8_1:5544231-5544250 Msa1174450:intron 35.0%
TGACCAAATGATTCATCTCT+TGG + chr8_1:5544237-5544256 None:intergenic 35.0%
TTGAAGTCATCTGACTTTCT+TGG - chr8_1:5544258-5544277 Msa1174450:intron 35.0%
!! CTTCAAAGGTGTTAAACTCA+GGG + chr8_1:5544356-5544375 None:intergenic 35.0%
!! TCTTCAAAGGTGTTAAACTC+AGG + chr8_1:5544357-5544376 None:intergenic 35.0%
GTTCTTTGAACAACGGTATT+GGG + chr8_1:5544440-5544459 None:intergenic 35.0%
AGTTCTTTGAACAACGGTAT+TGG + chr8_1:5544441-5544460 None:intergenic 35.0%
AACAAATAGGCATCTTAGTG+TGG - chr8_1:5544756-5544775 Msa1174450:intron 35.0%
!! AATGTCCGTTGTTGTTTACA+AGG - chr8_1:5544912-5544931 Msa1174450:intron 35.0%
CCAATCCTTGTAAACAACAA+CGG + chr8_1:5544920-5544939 None:intergenic 35.0%
GATTGGAATTTCATTGAGCA+AGG - chr8_1:5544934-5544953 Msa1174450:intron 35.0%
!! CCAAGATGTAAGGTTTTGTA+AGG + chr8_1:5544988-5545007 None:intergenic 35.0%
CCTTACAAAACCTTACATCT+TGG - chr8_1:5544985-5545004 Msa1174450:intron 35.0%
! CTTCCTTGCATGTTATTTAG+AGG - chr8_1:5545279-5545298 Msa1174450:intron 35.0%
ACTCCTCTAAATAACATGCA+AGG + chr8_1:5545285-5545304 None:intergenic 35.0%
! TTGCATGTTATTTAGAGGAG+TGG - chr8_1:5545284-5545303 Msa1174450:intron 35.0%
! ATTCTGAACTCCAAGCATTT+TGG - chr8_1:5545460-5545479 Msa1174450:intron 35.0%
CAAGTTCTTTCCAAAATGCT+TGG + chr8_1:5545473-5545492 None:intergenic 35.0%
! GTTTAAGATGCAAACTCGTA+CGG - chr8_1:5545533-5545552 Msa1174450:intron 35.0%
AAGCTTGCACCATTCTAATA+TGG - chr8_1:5545565-5545584 Msa1174450:intron 35.0%
! CTTCATGCAGCTGTTAATTT+TGG - chr8_1:5545600-5545619 Msa1174450:intron 35.0%
!! TACTTTTTGTTGGTCGGTTA+AGG + chr8_1:5545650-5545669 None:intergenic 35.0%
ACTACCAGAAGACTTATTTG+AGG - chr8_1:5545721-5545740 Msa1174450:CDS 35.0%
TTGTCCTCAAATAAGTCTTC+TGG + chr8_1:5545728-5545747 None:intergenic 35.0%
CTTCTTTCCAAACTTCTTGT+AGG + chr8_1:5545883-5545902 None:intergenic 35.0%
CAAGAAGTTTGGAAAGAAGT+TGG - chr8_1:5545884-5545903 Msa1174450:CDS 35.0%
GTAGGATAAAGCAGAGTATA+TGG + chr8_1:5545984-5546003 None:intergenic 35.0%
TCTACTTATCCTTCTCGGTT+TGG - chr8_1:5542423-5542442 Msa1174450:CDS 40.0%
TAATCTGAACCAAACCGAGA+AGG + chr8_1:5542435-5542454 None:intergenic 40.0%
ATTTACATGAAGAGGGTTCG+AGG + chr8_1:5542459-5542478 None:intergenic 40.0%
ATCGTGACTGAATAGACTTC+TGG - chr8_1:5543272-5543291 Msa1174450:intron 40.0%
GGGCAAACGAAGAAAAAGAA+AGG - chr8_1:5543917-5543936 Msa1174450:CDS 40.0%
TATCTCCATCCTTTCCTGAT+AGG + chr8_1:5543964-5543983 None:intergenic 40.0%
! GAGAGAGCGTATATCTTCAA+AGG + chr8_1:5544370-5544389 None:intergenic 40.0%
! ATCTGGCTTAGTACATCAGT+AGG + chr8_1:5544414-5544433 None:intergenic 40.0%
!! TTTTCGAACTGATGGTGAAG+CGG - chr8_1:5544461-5544480 Msa1174450:intron 40.0%
TAAGTTTCCACCACCTAAAG+TGG - chr8_1:5544488-5544507 Msa1174450:intron 40.0%
ATACCTTGAACCACTTTAGG+TGG + chr8_1:5544501-5544520 None:intergenic 40.0%
GAACTATCTTGGTCAATGCA+GGG - chr8_1:5544845-5544864 Msa1174450:intron 40.0%
AACTATCTTGGTCAATGCAG+GGG - chr8_1:5544846-5544865 Msa1174450:intron 40.0%
!! CCGTTGTTGTTTACAAGGAT+TGG - chr8_1:5544917-5544936 Msa1174450:intron 40.0%
TTACCACTGAGAATCTGAGA+TGG + chr8_1:5545073-5545092 None:intergenic 40.0%
GACTATCCTTATGCTTCAGA+CGG - chr8_1:5545354-5545373 Msa1174450:intron 40.0%
!! TTCAGACGGACTAGAGATAT+GGG - chr8_1:5545368-5545387 Msa1174450:intron 40.0%
! TATGGGCTGCTATTAAGTCA+TGG - chr8_1:5545385-5545404 Msa1174450:intron 40.0%
! ATGGGCTGCTATTAAGTCAT+GGG - chr8_1:5545386-5545405 Msa1174450:intron 40.0%
TTGGAAAGAACTTGTAGAGG+TGG - chr8_1:5545479-5545498 Msa1174450:intron 40.0%
TGGAAAGAACTTGTAGAGGT+GGG - chr8_1:5545480-5545499 Msa1174450:intron 40.0%
! GTGACTTTAGGAATGCAACA+TGG - chr8_1:5545508-5545527 Msa1174450:intron 40.0%
! ACTTTAGGAATGCAACATGG+TGG - chr8_1:5545511-5545530 Msa1174450:intron 40.0%
TTTGGACAATATGCGTATGG+AGG - chr8_1:5545618-5545637 Msa1174450:intron 40.0%
AGAAGATTCATGCCTGAGAA+AGG - chr8_1:5545669-5545688 Msa1174450:intron 40.0%
TACTCAACAGATCCTTTCTC+AGG + chr8_1:5545684-5545703 None:intergenic 40.0%
!! TGAGTATGATGAGCTTGCTA+AGG - chr8_1:5545698-5545717 Msa1174450:intron 40.0%
! CCTTGACAAGACCTCTAAAA+TGG + chr8_1:5545784-5545803 None:intergenic 40.0%
!! CCATTTTAGAGGTCTTGTCA+AGG - chr8_1:5545781-5545800 Msa1174450:CDS 40.0%
GCTTCTGATGAACAATACCT+TGG - chr8_1:5545807-5545826 Msa1174450:CDS 40.0%
TTCTGATTCACAGCCAAAAC+AGG - chr8_1:5545857-5545876 Msa1174450:CDS 40.0%
! AACTTCTTGTAGGCCTGTTT+TGG + chr8_1:5545873-5545892 None:intergenic 40.0%
AAACAGGCCTACAAGAAGTT+TGG - chr8_1:5545873-5545892 Msa1174450:CDS 40.0%
TCGAGAAAAACCTCGTTCAA+AGG - chr8_1:5545913-5545932 Msa1174450:CDS 40.0%
CATCATTGTTCCTTTGAACG+AGG + chr8_1:5545926-5545945 None:intergenic 40.0%
GGAACAATGATGAGACACTA+AGG - chr8_1:5545934-5545953 Msa1174450:CDS 40.0%
GAGACACTAAGGAATCGAAA+TGG - chr8_1:5545945-5545964 Msa1174450:CDS 40.0%
ACTCTGCTTTATCCTACTAG+TGG - chr8_1:5545987-5546006 Msa1174450:CDS 40.0%
CTCTGCTTTATCCTACTAGT+GGG - chr8_1:5545988-5546007 Msa1174450:CDS 40.0%
TCTGCTTTATCCTACTAGTG+GGG - chr8_1:5545989-5546008 Msa1174450:CDS 40.0%
GTCTGAATATGGAGACCTTG+CGG + chr8_1:5542152-5542171 None:intergenic 45.0%
GCAAGGTCTCCATATTCAGA+CGG - chr8_1:5542151-5542170 Msa1174450:CDS 45.0%
AAACCACGGCGGAGATTAAT+TGG - chr8_1:5542207-5542226 Msa1174450:CDS 45.0%
GCAGTAGATAGTGTCTTGTG+TGG + chr8_1:5543113-5543132 None:intergenic 45.0%
ATTGGTTAGGGAGGTGAACA+AGG - chr8_1:5543244-5543263 Msa1174450:intron 45.0%
GAGTGCAGCAGTTCAGTAAA+TGG + chr8_1:5543523-5543542 None:intergenic 45.0%
!!! TGCTGCTTTTTGTGAAGTGC+AGG + chr8_1:5543842-5543861 None:intergenic 45.0%
AGAAAGCCATGTTGGGATCT+CGG - chr8_1:5543873-5543892 Msa1174450:CDS 45.0%
GATATACGCTCTCTCTACGA+TGG - chr8_1:5544375-5544394 Msa1174450:intron 45.0%
! ACAACGGTATTGGGCTAATC+TGG + chr8_1:5544431-5544450 None:intergenic 45.0%
ATCACCAACTTGTCAGCCAT+TGG - chr8_1:5544602-5544621 Msa1174450:intron 45.0%
CATACCAATGGCTGACAAGT+TGG + chr8_1:5544609-5544628 None:intergenic 45.0%
TTCATTGTGTCACGGTAGTG+TGG + chr8_1:5544808-5544827 None:intergenic 45.0%
CGAACTATCTTGGTCAATGC+AGG - chr8_1:5544844-5544863 Msa1174450:intron 45.0%
ACTATCTTGGTCAATGCAGG+GGG - chr8_1:5544847-5544866 Msa1174450:intron 45.0%
! ATGGACTGACCCAAGATGTA+AGG + chr8_1:5544998-5545017 None:intergenic 45.0%
ATTTAGAGGAGTGGCAGTTC+AGG - chr8_1:5545293-5545312 Msa1174450:intron 45.0%
ATCAGAAGTCGAACACCATG+TGG + chr8_1:5545330-5545349 None:intergenic 45.0%
TGGTGTTCGACTTCTGATAG+AGG - chr8_1:5545332-5545351 Msa1174450:intron 45.0%
! TCTAGTCCGTCTGAAGCATA+AGG + chr8_1:5545363-5545382 None:intergenic 45.0%
!! CTTCAGACGGACTAGAGATA+TGG - chr8_1:5545367-5545386 Msa1174450:intron 45.0%
TACCTTGGAGAGAGAATCGA+AGG - chr8_1:5545822-5545841 Msa1174450:CDS 45.0%
GAATCGAAATGGACCTGTGA+AGG - chr8_1:5545956-5545975 Msa1174450:CDS 45.0%
AGAGTATATGGCACCTTCAC+AGG + chr8_1:5545972-5545991 None:intergenic 45.0%
CTTTATCCTACTAGTGGGGA+AGG - chr8_1:5545993-5546012 Msa1174450:CDS 45.0%
TGAATATGGAGACCTTGCGG+CGG + chr8_1:5542149-5542168 None:intergenic 50.0%
AGGTCTCCATATTCAGACGG+CGG - chr8_1:5542154-5542173 Msa1174450:CDS 50.0%
AACCTTCCGCCGTCTGAATA+TGG + chr8_1:5542163-5542182 None:intergenic 50.0%
AAGGTTCAAACGGTGAGGCT+AGG - chr8_1:5542177-5542196 Msa1174450:CDS 50.0%
GGCTAGGTAGCAAGAAACCA+CGG - chr8_1:5542193-5542212 Msa1174450:CDS 50.0%
TAGGTAGCAAGAAACCACGG+CGG - chr8_1:5542196-5542215 Msa1174450:CDS 50.0%
!! AGCACTTTTGCTGTCCCTCT+TGG - chr8_1:5542390-5542409 Msa1174450:CDS 50.0%
GCTTGTGCTTGTTTGTGCGT+TGG - chr8_1:5543344-5543363 Msa1174450:intron 50.0%
GTGCTTGTTTGTGCGTTGGA+AGG - chr8_1:5543348-5543367 Msa1174450:intron 50.0%
TCCCTGCCACAAACAACTAG+CGG - chr8_1:5543896-5543915 Msa1174450:CDS 50.0%
GTTTGCCCGCTAGTTGTTTG+TGG + chr8_1:5543905-5543924 None:intergenic 50.0%
CATCCTTTCCTGATAGGCTG+CGG + chr8_1:5543958-5543977 None:intergenic 50.0%
ATACGCTCTCTCTACGATGG+TGG - chr8_1:5544378-5544397 Msa1174450:intron 50.0%
CCTTGAACCACTTTAGGTGG+TGG + chr8_1:5544498-5544517 None:intergenic 50.0%
CCACCACCTAAAGTGGTTCA+AGG - chr8_1:5544495-5544514 Msa1174450:intron 50.0%
TTCCCTCGCACGAACTATCT+TGG - chr8_1:5544834-5544853 Msa1174450:intron 50.0%
GACCAAGATAGTTCGTGCGA+GGG + chr8_1:5544839-5544858 None:intergenic 50.0%
TGACCAAGATAGTTCGTGCG+AGG + chr8_1:5544840-5544859 None:intergenic 50.0%
GTGCCATCTCAGATTCTCAG+TGG - chr8_1:5545067-5545086 Msa1174450:intron 50.0%
GAACTTGTAGAGGTGGGTCA+TGG - chr8_1:5545486-5545505 Msa1174450:intron 50.0%
AGGTGGGTCATGGTGACTTT+AGG - chr8_1:5545496-5545515 Msa1174450:intron 50.0%
AGAGAATCGAAGGCGATCTC+TGG - chr8_1:5545832-5545851 Msa1174450:CDS 50.0%
GTCAATCCTTCCCCACTAGT+AGG + chr8_1:5546002-5546021 None:intergenic 50.0%
AATATGGAGACCTTGCGGCG+GGG + chr8_1:5542147-5542166 None:intergenic 55.0%
GAATATGGAGACCTTGCGGC+GGG + chr8_1:5542148-5542167 None:intergenic 55.0%
CTCCATATTCAGACGGCGGA+AGG - chr8_1:5542158-5542177 Msa1174450:CDS 55.0%
CAGACGGCGGAAGGTTCAAA+CGG - chr8_1:5542167-5542186 Msa1174450:CDS 55.0%
CCACCAATTAATCTCCGCCG+TGG + chr8_1:5542213-5542232 None:intergenic 55.0%
CCACGGCGGAGATTAATTGG+TGG - chr8_1:5542210-5542229 Msa1174450:CDS 55.0%
CCCGCTAGTTGTTTGTGGCA+GGG + chr8_1:5543900-5543919 None:intergenic 55.0%
CCCTGCCACAAACAACTAGC+GGG - chr8_1:5543897-5543916 Msa1174450:CDS 55.0%
TTCTTCTGCCGCAGCCTATC+AGG - chr8_1:5543947-5543966 Msa1174450:intron 55.0%
CGCAGCCTATCAGGAAAGGA+TGG - chr8_1:5543956-5543975 Msa1174450:intron 55.0%
!! GGTCAATGCAGGGGGTGTTA+TGG - chr8_1:5544855-5544874 Msa1174450:intron 55.0%
CAGGATCCAGCTTCTCCACA+TGG - chr8_1:5545312-5545331 Msa1174450:intron 55.0%
CGAACACCATGTGGAGAAGC+TGG + chr8_1:5545321-5545340 None:intergenic 55.0%
CGCCTTCGATTCTCTCTCCA+AGG + chr8_1:5545827-5545846 None:intergenic 55.0%
! GGGGAAGGATTGACTTCCAG+AGG - chr8_1:5546008-5546027 Msa1174450:CDS 55.0%
GACACTGTTGGGAATGCCTC+TGG + chr8_1:5546027-5546046 None:intergenic 55.0%
GGCGGAAGGTTCAAACGGTG+AGG - chr8_1:5542172-5542191 Msa1174450:CDS 60.0%
CAGGGACCGAGATCCCAACA+TGG + chr8_1:5543882-5543901 None:intergenic 60.0%
GCCCGCTAGTTGTTTGTGGC+AGG + chr8_1:5543901-5543920 None:intergenic 60.0%
CTGCCGCAGCCTATCAGGAA+AGG - chr8_1:5543952-5543971 Msa1174450:intron 60.0%
AACATGGCAGCCCCGCCGCA+AGG - chr8_1:5542134-5542153 Msa1174450:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 5542129 5546055 5542129 ID=Msa1174450;Name=Msa1174450
chr8_1 mRNA 5542129 5546055 5542129 ID=Msa1174450-mRNA-1;Parent=Msa1174450;Name=Msa1174450-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|3|0|458
chr8_1 exon 5545712 5546055 5545712 ID=Msa1174450-mRNA-1:exon:1856;Parent=Msa1174450-mRNA-1
chr8_1 exon 5543668 5543945 5543668 ID=Msa1174450-mRNA-1:exon:1855;Parent=Msa1174450-mRNA-1
chr8_1 exon 5542129 5542883 5542129 ID=Msa1174450-mRNA-1:exon:1854;Parent=Msa1174450-mRNA-1
chr8_1 CDS 5545712 5546055 5545712 ID=Msa1174450-mRNA-1:cds;Parent=Msa1174450-mRNA-1
chr8_1 CDS 5543668 5543945 5543668 ID=Msa1174450-mRNA-1:cds;Parent=Msa1174450-mRNA-1
chr8_1 CDS 5542129 5542883 5542129 ID=Msa1174450-mRNA-1:cds;Parent=Msa1174450-mRNA-1
Gene Sequence

>Msa1174450

ATGACAACATGGCAGCCCCGCCGCAAGGTCTCCATATTCAGACGGCGGAAGGTTCAAACGGTGAGGCTAGGTAGCAAGAAACCACGGCGGAGATTAATTGGTGGCATAGTTAGAATGTTTAAAAGGATGCGTGTAAAGTGGCTTAAGTTACAATATCTTAGGTTATTGAAACGGCTTAAGGAACATTATAGAAACGTTGTGAAAGATCTTATTGAAGCTGGTGCTACCATTGAAACTTTTCAACAACGCCTTTTTATGGAAAGCACTTTTGCTGTCCCTCTTGGTGTTAACTTATCTACTTATCCTTCTCGGTTTGGTTCAGATTATCCTCGAACCCTCTTCATAGATGAATCATTTGGTCACTTGAAGTCATCTGACTTTCTTGGTTATGTACTCAAATCAGCAACTCACAGAGTCATACCGAATTTGAGATCTAAAGCTACATTACAACTCAATAACCCTGAGTTTAACACCTTTGAAGATATACGCTCTCTCTACGATGGTGGAATTAAGCTTCCTACTGATGTACTAAGCCAGATTAGCCCAATACCGTTGTTCAAAGAACTTTTTCGAACTGATGGTGAAGCGGTACTTAAGTTTCCACCACCTAAAGTGGTTCAAGGAGTGGCAGTTCAGGATCCAGCTTCTCCACATGGTGTTCGACTTCTGATAGAGGACTATCCTTATGCTTCAGACGGACTAGAGATATGGGCTGCTATTAAGTCATGGGTTGATGAATATGTGAATTTCTACTACAAGTCTGATGCAGATGTTGTAAAAGATTCTGAACTCCAAGCATTTTGGAAAGAACTTGTAGAGGTGGGTCATGGTGACTTTAGGAATGCAACATGGTGGTTTAAGATGCAAACTCGTACGGAGTTGAAAGAAGCTTGCACCATTCTAATATGGATTTCTTCAGCACTTCATGCAGCTGTTAATTTTGGACAATATGCGTATGGAGGATATATCCTTAACCGACCAACAAAAAGTAGAAGATTCATGCCTGAGAAAGGATCTGTTGAGTATGATGAGCTTGCTAAGGACTACCAGAAGACTTATTTGAGGACAATCACCGCAAAGAATGATACTCTTACTAACTTGACCATTTTAGAGGTCTTGTCAAGGCATGCTTCTGATGAACAATACCTTGGAGAGAGAATCGAAGGCGATCTCTGGACTTCTGATTCACAGCCAAAACAGGCCTACAAGAAGTTTGGAAAGAAGTTGGCTGAAATCGAGAAAAACCTCGTTCAAAGGAACAATGATGAGACACTAAGGAATCGAAATGGACCTGTGAAGGTGCCATATACTCTGCTTTATCCTACTAGTGGGGAAGGATTGACTTCCAGAGGCATTCCCAACAGTGTCTCCATCTAA

Protein sequence

>Msa1174450

MTTWQPRRKVSIFRRRKVQTVRLGSKKPRRRLIGGIVRMFKRMRVKWLKLQYLRLLKRLKEHYRNVVKDLIEAGATIETFQQRLFMESTFAVPLGVNLSTYPSRFGSDYPRTLFIDESFGHLKSSDFLGYVLKSATHRVIPNLRSKATLQLNNPEFNTFEDIRSLYDGGIKLPTDVLSQISPIPLFKELFRTDGEAVLKFPPPKVVQGVAVQDPASPHGVRLLIEDYPYASDGLEIWAAIKSWVDEYVNFYYKSDADVVKDSELQAFWKELVEVGHGDFRNATWWFKMQTRTELKEACTILIWISSALHAAVNFGQYAYGGYILNRPTKSRRFMPEKGSVEYDELAKDYQKTYLRTITAKNDTLTNLTILEVLSRHASDEQYLGERIEGDLWTSDSQPKQAYKKFGKKLAEIEKNLVQRNNDETLRNRNGPVKVPYTLLYPTSGEGLTSRGIPNSVSI*