Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398690 | XP_003626244.1 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398690 | sp|I6YGS0|EPHA_MYCTU | 34.639 | 332 | 185 | 8 | 1 | 316 | 1 | 316 | 1.23e-62 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398690 | A2Q321 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0398690 | 0.805050 | 1.609605e-49 | -8.615850e-47 |
| Msa0027860 | Msa0398690 | 0.803027 | 4.239954e-49 | -8.615850e-47 |
| Msa0036580 | Msa0398690 | 0.818078 | 2.364336e-52 | -8.615850e-47 |
| Msa0048950 | Msa0398690 | 0.822721 | 2.035278e-53 | -8.615850e-47 |
| Msa0059880 | Msa0398690 | 0.849473 | 3.161653e-60 | -8.615850e-47 |
| Msa0061600 | Msa0398690 | 0.811988 | 5.315615e-51 | -8.615850e-47 |
| Msa0064990 | Msa0398690 | 0.804384 | 2.216697e-49 | -8.615850e-47 |
| Msa0072030 | Msa0398690 | 0.801471 | 8.865672e-49 | -8.615850e-47 |
| Msa0073970 | Msa0398690 | 0.813140 | 2.976422e-51 | -8.615850e-47 |
| Msa0106130 | Msa0398690 | 0.802345 | 5.862210e-49 | -8.615850e-47 |
| Msa0139270 | Msa0398690 | 0.822041 | 2.928937e-53 | -8.615850e-47 |
| Msa0140270 | Msa0398690 | 0.812907 | 3.348004e-51 | -8.615850e-47 |
| Msa0150910 | Msa0398690 | 0.846777 | 1.755201e-59 | -8.615850e-47 |
| Msa0155850 | Msa0398690 | 0.805756 | 1.145008e-49 | -8.615850e-47 |
| Msa0163370 | Msa0398690 | 0.801570 | 8.461931e-49 | -8.615850e-47 |
| Msa0176620 | Msa0398690 | 0.828562 | 8.393053e-55 | -8.615850e-47 |
| Msa0197750 | Msa0398690 | 0.816535 | 5.260414e-52 | -8.615850e-47 |
| Msa0199860 | Msa0398690 | 0.861661 | 8.768352e-64 | -8.615850e-47 |
| Msa0200090 | Msa0398690 | 0.800175 | 1.629917e-48 | -8.615850e-47 |
| Msa0207640 | Msa0398690 | 0.808749 | 2.658380e-50 | -8.615850e-47 |
| Msa0207930 | Msa0398690 | 0.800599 | 1.336464e-48 | -8.615850e-47 |
| Msa0207970 | Msa0398690 | 0.805795 | 1.123553e-49 | -8.615850e-47 |
| Msa0212550 | Msa0398690 | 0.816940 | 4.267491e-52 | -8.615850e-47 |
| Msa0223880 | Msa0398690 | 0.804598 | 2.000063e-49 | -8.615850e-47 |
| Msa0225910 | Msa0398690 | 0.808045 | 3.755346e-50 | -8.615850e-47 |
| Msa0234120 | Msa0398690 | 0.825906 | 3.629717e-54 | -8.615850e-47 |
| Msa0378390 | Msa0398690 | 0.807134 | 5.863351e-50 | -8.615850e-47 |
| Msa0396790 | Msa0398690 | 0.813449 | 2.545363e-51 | -8.615850e-47 |
| Msa0398690 | Msa0427740 | 0.811019 | 8.629370e-51 | -8.615850e-47 |
| Msa0398690 | Msa0427970 | 0.810852 | 9.380536e-51 | -8.615850e-47 |
| Msa0398690 | Msa0434890 | 0.822083 | 2.864100e-53 | -8.615850e-47 |
| Msa0398690 | Msa0444400 | 0.812407 | 4.305130e-51 | -8.615850e-47 |
| Msa0398690 | Msa0464310 | 0.808167 | 3.537482e-50 | -8.615850e-47 |
| Msa0398690 | Msa0471210 | 0.800758 | 1.240213e-48 | -8.615850e-47 |
| Msa0398690 | Msa0491950 | 0.810691 | 1.016408e-50 | -8.615850e-47 |
| Msa0398690 | Msa0493710 | 0.821676 | 3.558153e-53 | -8.615850e-47 |
| Msa0398690 | Msa0518570 | 0.812675 | 3.762045e-51 | -8.615850e-47 |
| Msa0398690 | Msa0533510 | 0.824984 | 6.002284e-54 | -8.615850e-47 |
| Msa0398690 | Msa0533520 | 0.817163 | 3.803093e-52 | -8.615850e-47 |
| Msa0398690 | Msa0535570 | 0.810961 | 8.882671e-51 | -8.615850e-47 |
| Msa0398690 | Msa0538440 | 0.812340 | 4.453931e-51 | -8.615850e-47 |
| Msa0398690 | Msa0538450 | 0.830219 | 3.321649e-55 | -8.615850e-47 |
| Msa0398690 | Msa0538520 | 0.817085 | 3.958877e-52 | -8.615850e-47 |
| Msa0398690 | Msa0538530 | 0.815316 | 9.841312e-52 | -8.615850e-47 |
| Msa0398690 | Msa0543740 | 0.809131 | 2.201763e-50 | -8.615850e-47 |
| Msa0398690 | Msa0548970 | 0.816740 | 4.731984e-52 | -8.615850e-47 |
| Msa0398690 | Msa0589720 | 0.825814 | 3.817292e-54 | -8.615850e-47 |
| Msa0398690 | Msa0589730 | 0.834519 | 2.860136e-56 | -8.615850e-47 |
| Msa0398690 | Msa0589740 | 0.806096 | 9.712446e-50 | -8.615850e-47 |
| Msa0398690 | Msa0589750 | 0.802987 | 4.321131e-49 | -8.615850e-47 |
| Msa0398690 | Msa0594330 | 0.830206 | 3.345537e-55 | -8.615850e-47 |
| Msa0398690 | Msa0599600 | 0.813961 | 1.963763e-51 | -8.615850e-47 |
| Msa0398690 | Msa0605020 | 0.800328 | 1.517614e-48 | -8.615850e-47 |
| Msa0398690 | Msa0605470 | 0.812268 | 4.618326e-51 | -8.615850e-47 |
| Msa0398690 | Msa0629030 | 0.806303 | 8.783150e-50 | -8.615850e-47 |
| Msa0398690 | Msa0630130 | 0.831519 | 1.594381e-55 | -8.615850e-47 |
| Msa0398690 | Msa0631700 | 0.803836 | 2.882967e-49 | -8.615850e-47 |
| Msa0398690 | Msa0634290 | 0.804639 | 1.961404e-49 | -8.615850e-47 |
| Msa0398690 | Msa0645100 | 0.800239 | 1.581887e-48 | -8.615850e-47 |
| Msa0398690 | Msa0646670 | 0.807496 | 4.913317e-50 | -8.615850e-47 |
| Msa0398690 | Msa0652610 | 0.807599 | 4.672270e-50 | -8.615850e-47 |
| Msa0398690 | Msa0667640 | 0.819894 | 9.137240e-53 | -8.615850e-47 |
| Msa0398690 | Msa0668210 | 0.829491 | 4.996690e-55 | -8.615850e-47 |
| Msa0398690 | Msa0668220 | 0.857319 | 1.769646e-62 | -8.615850e-47 |
| Msa0398690 | Msa0668230 | 0.831086 | 2.037813e-55 | -8.615850e-47 |
| Msa0398690 | Msa0671490 | 0.806638 | 7.465564e-50 | -8.615850e-47 |
| Msa0398690 | Msa0672780 | 0.801805 | 7.572481e-49 | -8.615850e-47 |
| Msa0398690 | Msa0678620 | 0.804150 | 2.479889e-49 | -8.615850e-47 |
| Msa0398690 | Msa0684590 | 0.825632 | 4.217709e-54 | -8.615850e-47 |
| Msa0398690 | Msa0684600 | 0.812311 | 4.518934e-51 | -8.615850e-47 |
| Msa0398690 | Msa0709820 | 0.826093 | 3.277878e-54 | -8.615850e-47 |
| Msa0398690 | Msa0711240 | 0.818231 | 2.183642e-52 | -8.615850e-47 |
| Msa0398690 | Msa0715260 | 0.816868 | 4.429029e-52 | -8.615850e-47 |
| Msa0398690 | Msa0721260 | 0.820987 | 5.130552e-53 | -8.615850e-47 |
| Msa0398690 | Msa0727480 | 0.823071 | 1.687592e-53 | -8.615850e-47 |
| Msa0398690 | Msa0728520 | 0.802466 | 5.534838e-49 | -8.615850e-47 |
| Msa0398690 | Msa0735280 | 0.837986 | 3.759344e-57 | -8.615850e-47 |
| Msa0398690 | Msa0738660 | 0.813699 | 2.243017e-51 | -8.615850e-47 |
| Msa0398690 | Msa0747500 | 0.868008 | 8.979439e-66 | -8.615850e-47 |
| Msa0398690 | Msa0753410 | 0.825884 | 3.674757e-54 | -8.615850e-47 |
| Msa0398690 | Msa0757240 | 0.814783 | 1.292027e-51 | -8.615850e-47 |
| Msa0398690 | Msa0768670 | 0.803375 | 3.592317e-49 | -8.615850e-47 |
| Msa0398690 | Msa0776540 | 0.800425 | 1.449885e-48 | -8.615850e-47 |
| Msa0398690 | Msa0777070 | 0.806770 | 7.001733e-50 | -8.615850e-47 |
| Msa0398690 | Msa0787860 | 0.846671 | 1.876107e-59 | -8.615850e-47 |
| Msa0398690 | Msa0795330 | 0.835143 | 1.991528e-56 | -8.615850e-47 |
| Msa0398690 | Msa0798230 | 0.813652 | 2.296792e-51 | -8.615850e-47 |
| Msa0398690 | Msa0814160 | 0.812480 | 4.150442e-51 | -8.615850e-47 |
| Msa0398690 | Msa0816140 | 0.812295 | 4.554496e-51 | -8.615850e-47 |
| Msa0398690 | Msa0824850 | 0.822835 | 1.914570e-53 | -8.615850e-47 |
| Msa0398690 | Msa0833230 | 0.809449 | 1.881994e-50 | -8.615850e-47 |
| Msa0398690 | Msa0836740 | 0.815421 | 9.326573e-52 | -8.615850e-47 |
| Msa0398690 | Msa0854840 | 0.819541 | 1.100052e-52 | -8.615850e-47 |
| Msa0398690 | Msa0859250 | 0.802256 | 6.114928e-49 | -8.615850e-47 |
| Msa0398690 | Msa0863860 | 0.823259 | 1.525332e-53 | -8.615850e-47 |
| Msa0398690 | Msa0864160 | 0.829512 | 4.939345e-55 | -8.615850e-47 |
| Msa0398690 | Msa0868820 | 0.814135 | 1.797423e-51 | -8.615850e-47 |
| Msa0398690 | Msa0883610 | 0.831298 | 1.806583e-55 | -8.615850e-47 |
| Msa0398690 | Msa0883640 | 0.817980 | 2.488576e-52 | -8.615850e-47 |
| Msa0398690 | Msa0886370 | 0.814329 | 1.628182e-51 | -8.615850e-47 |
| Msa0398690 | Msa0896920 | 0.814223 | 1.719163e-51 | -8.615850e-47 |
| Msa0398690 | Msa0896990 | 0.867301 | 1.513855e-65 | -8.615850e-47 |
| Msa0398690 | Msa0910570 | 0.815122 | 1.086800e-51 | -8.615850e-47 |
| Msa0398690 | Msa0910830 | 0.823340 | 1.459930e-53 | -8.615850e-47 |
| Msa0398690 | Msa0913550 | 0.819085 | 1.397417e-52 | -8.615850e-47 |
| Msa0398690 | Msa0932890 | 0.819992 | 8.680497e-53 | -8.615850e-47 |
| Msa0398690 | Msa0932900 | 0.800558 | 1.362044e-48 | -8.615850e-47 |
| Msa0398690 | Msa0932930 | 0.814776 | 1.297040e-51 | -8.615850e-47 |
| Msa0398690 | Msa0933580 | 0.833330 | 5.672951e-56 | -8.615850e-47 |
| Msa0398690 | Msa0933610 | 0.800723 | 1.260468e-48 | -8.615850e-47 |
| Msa0398690 | Msa0948460 | 0.808196 | 3.487877e-50 | -8.615850e-47 |
| Msa0398690 | Msa0951060 | 0.802407 | 5.692630e-49 | -8.615850e-47 |
| Msa0398690 | Msa0960090 | 0.818844 | 1.585833e-52 | -8.615850e-47 |
| Msa0398690 | Msa0962260 | 0.838016 | 3.694593e-57 | -8.615850e-47 |
| Msa0398690 | Msa0967820 | 0.809687 | 1.672555e-50 | -8.615850e-47 |
| Msa0398690 | Msa0970790 | 0.801564 | 8.485023e-49 | -8.615850e-47 |
| Msa0398690 | Msa0985250 | 0.837649 | 4.588399e-57 | -8.615850e-47 |
| Msa0398690 | Msa0985260 | 0.845432 | 4.076305e-59 | -8.615850e-47 |
| Msa0398690 | Msa0985290 | 0.829191 | 5.910717e-55 | -8.615850e-47 |
| Msa0398690 | Msa0985700 | 0.818370 | 2.031407e-52 | -8.615850e-47 |
| Msa0398690 | Msa0993450 | 0.800613 | 1.327830e-48 | -8.615850e-47 |
| Msa0398690 | Msa0996940 | 0.857672 | 1.391364e-62 | -8.615850e-47 |
| Msa0398690 | Msa1006170 | 0.807882 | 4.067248e-50 | -8.615850e-47 |
| Msa0398690 | Msa1023430 | 0.809062 | 2.278205e-50 | -8.615850e-47 |
| Msa0398690 | Msa1024140 | -0.800265 | 1.562698e-48 | -8.615850e-47 |
| Msa0398690 | Msa1024350 | 0.832395 | 9.686675e-56 | -8.615850e-47 |
| Msa0398690 | Msa1026170 | 0.806366 | 8.518882e-50 | -8.615850e-47 |
| Msa0398690 | Msa1046220 | 0.802312 | 5.955794e-49 | -8.615850e-47 |
| Msa0398690 | Msa1061840 | 0.802034 | 6.794954e-49 | -8.615850e-47 |
| Msa0398690 | Msa1079870 | 0.802836 | 4.642898e-49 | -8.615850e-47 |
| Msa0398690 | Msa1087380 | 0.808696 | 2.728163e-50 | -8.615850e-47 |
| Msa0398690 | Msa1099640 | 0.801941 | 7.098512e-49 | -8.615850e-47 |
| Msa0398690 | Msa1104960 | 0.801566 | 8.474620e-49 | -8.615850e-47 |
| Msa0398690 | Msa1107510 | 0.818163 | 2.261789e-52 | -8.615850e-47 |
| Msa0398690 | Msa1109880 | 0.809588 | 1.756630e-50 | -8.615850e-47 |
| Msa0398690 | Msa1109890 | 0.836680 | 8.117980e-57 | -8.615850e-47 |
| Msa0398690 | Msa1110040 | 0.808179 | 3.516861e-50 | -8.615850e-47 |
| Msa0398690 | Msa1138110 | 0.806321 | 8.708590e-50 | -8.615850e-47 |
| Msa0398690 | Msa1151070 | 0.819161 | 1.342988e-52 | -8.615850e-47 |
| Msa0398690 | Msa1173290 | 0.815739 | 7.922602e-52 | -8.615850e-47 |
| Msa0398690 | Msa1214960 | 0.811229 | 7.770194e-51 | -8.615850e-47 |
| Msa0398690 | Msa1262810 | 0.815326 | 9.790391e-52 | -8.615850e-47 |
| Msa0398690 | Msa1296870 | 0.823418 | 1.400142e-53 | -8.615850e-47 |
| Msa0398690 | Msa1314710 | 0.800145 | 1.653577e-48 | -8.615850e-47 |
| Msa0398690 | Msa1323030 | 0.831439 | 1.667896e-55 | -8.615850e-47 |
| Msa0398690 | Msa1323120 | 0.802220 | 6.220773e-49 | -8.615850e-47 |
| Msa0398690 | Msa1323150 | 0.815139 | 1.077103e-51 | -8.615850e-47 |
| Msa0398690 | Msa1323160 | 0.843481 | 1.364578e-58 | -8.615850e-47 |
| Msa0398690 | Msa1345390 | 0.817937 | 2.545254e-52 | -8.615850e-47 |
| Msa0398690 | Msa1355340 | 0.809119 | 2.215043e-50 | -8.615850e-47 |
| Msa0398690 | Msa1376070 | 0.800187 | 1.621105e-48 | -8.615850e-47 |
| Msa0398690 | Msa1395690 | 0.828007 | 1.142089e-54 | -8.615850e-47 |
| Msa0398690 | Msa1398110 | 0.820390 | 7.034411e-53 | -8.615850e-47 |
| Msa0398690 | Msa1411550 | 0.806226 | 9.118671e-50 | -8.615850e-47 |
| Msa0398690 | Msa1445900 | 0.834151 | 3.538507e-56 | -8.615850e-47 |
| Msa0398690 | Msa1448150 | 0.808969 | 2.384398e-50 | -8.615850e-47 |
| Msa0398690 | Msa1453650 | 0.807807 | 4.220089e-50 | -8.615850e-47 |
| Msa0398690 | Msa1459930 | 0.800029 | 1.745434e-48 | -8.615850e-47 |
| Msa0398690 | Msa1460310 | 0.808584 | 2.882629e-50 | -8.615850e-47 |
| Msa0242390 | Msa0398690 | 0.853002 | 3.187021e-61 | -8.615850e-47 |
| Msa0242700 | Msa0398690 | 0.809144 | 2.187914e-50 | -8.615850e-47 |
| Msa0252930 | Msa0398690 | 0.809987 | 1.442120e-50 | -8.615850e-47 |
| Msa0264940 | Msa0398690 | 0.809731 | 1.636556e-50 | -8.615850e-47 |
| Msa0265060 | Msa0398690 | 0.804257 | 2.355559e-49 | -8.615850e-47 |
| Msa0266640 | Msa0398690 | 0.824104 | 9.669012e-54 | -8.615850e-47 |
| Msa0266650 | Msa0398690 | 0.819110 | 1.379736e-52 | -8.615850e-47 |
| Msa0274260 | Msa0398690 | 0.829142 | 6.072958e-55 | -8.615850e-47 |
| Msa0275570 | Msa0398690 | 0.856138 | 3.938235e-62 | -8.615850e-47 |
| Msa0278950 | Msa0398690 | 0.820883 | 5.420586e-53 | -8.615850e-47 |
| Msa0298270 | Msa0398690 | 0.805556 | 1.261054e-49 | -8.615850e-47 |
| Msa0302990 | Msa0398690 | 0.808957 | 2.399529e-50 | -8.615850e-47 |
| Msa0318370 | Msa0398690 | 0.815931 | 7.178348e-52 | -8.615850e-47 |
| Msa0319830 | Msa0398690 | 0.814211 | 1.729466e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398690 | MtrunA17_Chr7g0272501 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 0.0 | 618 |
| Msa0398690 | MtrunA17_Chr7g0272531 | 91.223 | 319 | 28 | 0 | 1 | 319 | 31 | 349 | 0.0 | 617 |
| Msa0398690 | MtrunA17_Chr7g0272171 | 90.282 | 319 | 31 | 0 | 1 | 319 | 1 | 319 | 0.0 | 605 |
| Msa0398690 | MtrunA17_Chr7g0272181 | 87.774 | 319 | 39 | 0 | 1 | 319 | 1 | 319 | 0.0 | 590 |
| Msa0398690 | MtrunA17_Chr7g0272481 | 86.520 | 319 | 43 | 0 | 1 | 319 | 1 | 319 | 0.0 | 585 |
| Msa0398690 | MtrunA17_Chr7g0272431 | 75.701 | 321 | 74 | 2 | 1 | 319 | 1 | 319 | 0.0 | 513 |
| Msa0398690 | MtrunA17_Chr7g0272441 | 76.324 | 321 | 72 | 2 | 1 | 319 | 1 | 319 | 0.0 | 506 |
| Msa0398690 | MtrunA17_Chr7g0272451 | 74.922 | 319 | 77 | 2 | 1 | 319 | 1 | 316 | 0.0 | 504 |
| Msa0398690 | MtrunA17_Chr4g0000111 | 70.898 | 323 | 89 | 3 | 1 | 319 | 1 | 322 | 4.03e-177 | 493 |
| Msa0398690 | MtrunA17_Chr4g0067581 | 60.125 | 321 | 124 | 3 | 1 | 319 | 37 | 355 | 3.53e-140 | 400 |
| Msa0398690 | MtrunA17_Chr7g0269471 | 61.129 | 319 | 122 | 2 | 1 | 319 | 1 | 317 | 2.38e-139 | 397 |
| Msa0398690 | MtrunA17_Chr8g0372491 | 47.649 | 319 | 163 | 3 | 1 | 319 | 3 | 317 | 4.46e-105 | 310 |
| Msa0398690 | MtrunA17_Chr7g0272471 | 83.333 | 156 | 26 | 0 | 1 | 156 | 1 | 156 | 2.11e-97 | 284 |
| Msa0398690 | MtrunA17_Chr1g0192291 | 72.956 | 159 | 39 | 2 | 1 | 156 | 1 | 158 | 6.60e-84 | 250 |
| Msa0398690 | MtrunA17_Chr2g0324141 | 35.826 | 321 | 192 | 7 | 1 | 318 | 1 | 310 | 1.30e-63 | 203 |
| Msa0398690 | MtrunA17_Chr4g0047701 | 35.826 | 321 | 191 | 6 | 1 | 318 | 1 | 309 | 1.43e-61 | 198 |
| Msa0398690 | MtrunA17_Chr2g0324161 | 34.579 | 321 | 196 | 7 | 1 | 318 | 1 | 310 | 1.78e-60 | 195 |
| Msa0398690 | MtrunA17_Chr4g0047681 | 34.891 | 321 | 194 | 6 | 1 | 318 | 1 | 309 | 1.10e-58 | 191 |
| Msa0398690 | MtrunA17_Chr3g0086531 | 93.151 | 73 | 5 | 0 | 80 | 152 | 1 | 73 | 2.68e-46 | 152 |
| Msa0398690 | MtrunA17_Chr7g0272461 | 62.264 | 106 | 36 | 2 | 178 | 281 | 2 | 105 | 2.41e-38 | 133 |
| Msa0398690 | MtrunA17_Chr7g0272391 | 60.684 | 117 | 24 | 2 | 161 | 276 | 1 | 96 | 2.65e-38 | 132 |
| Msa0398690 | MtrunA17_Chr7g0272511 | 86.842 | 38 | 5 | 0 | 278 | 315 | 29 | 66 | 6.12e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398690 | AT3G05600.1 | 60.185 | 324 | 124 | 4 | 1 | 319 | 1 | 324 | 1.50e-146 | 416 |
| Msa0398690 | AT4G02340.1 | 57.053 | 319 | 134 | 3 | 1 | 319 | 1 | 316 | 1.98e-135 | 387 |
| Msa0398690 | AT2G26740.1 | 60.248 | 322 | 121 | 4 | 4 | 319 | 1 | 321 | 6.31e-125 | 360 |
| Msa0398690 | AT4G15960.1 | 52.308 | 325 | 148 | 3 | 1 | 319 | 51 | 374 | 1.99e-120 | 351 |
| Msa0398690 | AT2G26750.1 | 58.255 | 321 | 128 | 4 | 4 | 319 | 1 | 320 | 1.59e-119 | 347 |
| Msa0398690 | AT3G05600.2 | 61.728 | 243 | 88 | 4 | 1 | 238 | 1 | 243 | 3.85e-108 | 315 |
| Msa0398690 | AT4G15955.3 | 49.080 | 326 | 128 | 4 | 5 | 319 | 6 | 304 | 1.56e-104 | 308 |
| Msa0398690 | AT3G51000.1 | 45.872 | 327 | 156 | 6 | 3 | 319 | 4 | 319 | 1.00e-99 | 296 |
| Msa0398690 | AT4G15955.2 | 58.046 | 174 | 63 | 2 | 5 | 168 | 6 | 179 | 2.16e-68 | 212 |
| Msa0398690 | AT4G15955.1 | 58.182 | 165 | 59 | 2 | 5 | 159 | 6 | 170 | 3.50e-64 | 201 |
Find 95 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 3_2:+20657932 | None:intergenic |
| AAATAATGTATGTATCTTTC+TGG | 0.196639 | 3_2:-20655949 | Msa0398690:three_prime_UTR |
| CCAATTGTCTTGTTTCTTCA+TGG | 0.206846 | 3_2:-20658202 | Msa0398690:CDS |
| ATACATTATTTAGAATTAAA+TGG | 0.219511 | 3_2:+20655961 | None:intergenic |
| ACAATGGGATTATGTATTAT+TGG | 0.242243 | 3_2:+20655901 | None:intergenic |
| TTATTATATATGTAGATTTC+AGG | 0.260713 | 3_2:-20657831 | Msa0398690:intron |
| AAAATGCATATTGCTGAAAA+AGG | 0.266560 | 3_2:-20658235 | Msa0398690:CDS |
| GTTGCACTTATAGACTTTCT+AGG | 0.271139 | 3_2:-20658025 | Msa0398690:CDS |
| TACTCTCCCTTGGGAAATAT+TGG | 0.280214 | 3_2:+20656694 | None:intergenic |
| ACCACAGGAACCAGGCAAAA+TGG | 0.316985 | 3_2:-20656788 | Msa0398690:intron |
| GCCCTCACAGCTCGGAAAAC+TGG | 0.342370 | 3_2:-20656721 | Msa0398690:CDS |
| CCTAAAATCAGAACTGTTGA+TGG | 0.347446 | 3_2:-20657878 | Msa0398690:CDS |
| TGTTTCTTGTGGCTCATGAT+TGG | 0.349713 | 3_2:-20657991 | Msa0398690:CDS |
| ATATTTCCCAAGGGAGAGTA+TGG | 0.351665 | 3_2:-20656691 | Msa0398690:CDS |
| GTTTCTTGTGGCTCATGATT+GGG | 0.353911 | 3_2:-20657990 | Msa0398690:CDS |
| TTCATGGCTTCCTCGAACTC+TGG | 0.354346 | 3_2:-20658186 | Msa0398690:CDS |
| GACAATCACTTCTTCCAGAT+TGG | 0.360761 | 3_2:+20656167 | None:intergenic |
| GATGGCATGCGTGCTGCTTA+TGG | 0.363820 | 3_2:-20657860 | Msa0398690:CDS |
| CATGATTGGGGTGCCATCAT+TGG | 0.372270 | 3_2:-20657977 | Msa0398690:CDS |
| CCCAAGGGAGAGTATGGAAC+TGG | 0.372941 | 3_2:-20656685 | Msa0398690:CDS |
| GTCTCCAAAATTGAGAAAAC+AGG | 0.379912 | 3_2:-20656598 | Msa0398690:CDS |
| GGTAAGGTGTCAGGAGTATC+CGG | 0.384128 | 3_2:+20656655 | None:intergenic |
| AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 3_2:+20656646 | None:intergenic |
| GAAGAAGTGATTGTCCAAAA+AGG | 0.401350 | 3_2:-20656159 | Msa0398690:CDS |
| CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 3_2:-20656648 | Msa0398690:CDS |
| CAAAGAAGATGTGCCCAATC+TGG | 0.410756 | 3_2:-20656181 | Msa0398690:CDS |
| ATTGAGAAAACAGGCTTCAC+TGG | 0.417402 | 3_2:-20656589 | Msa0398690:CDS |
| GTACCTGTGAAATTCATTAC+AGG | 0.421276 | 3_2:-20656264 | Msa0398690:CDS |
| TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 3_2:-20656322 | Msa0398690:intron |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 3_2:+20657933 | None:intergenic |
| TCACCATAGCCACGGAGATC+AGG | 0.444071 | 3_2:+20658106 | None:intergenic |
| CAGCTACACAGGGTTTCATA+TGG | 0.449902 | 3_2:-20658059 | Msa0398690:CDS |
| ACAATCACTTCTTCCAGATT+GGG | 0.454843 | 3_2:+20656168 | None:intergenic |
| CCATGAAGAAACAAGACAAT+TGG | 0.459751 | 3_2:+20658202 | None:intergenic |
| CCCAGTTCCATACTCTCCCT+TGG | 0.465033 | 3_2:+20656684 | None:intergenic |
| ATACACCTCACTAAACTTGA+AGG | 0.465604 | 3_2:-20656226 | Msa0398690:CDS |
| TTCTGTAAGCCAAGAGGGTA+AGG | 0.483607 | 3_2:+20656639 | None:intergenic |
| GCTCCTGATCTCCGTGGCTA+TGG | 0.495716 | 3_2:-20658109 | Msa0398690:CDS |
| CCAGTTCCATACTCTCCCTT+GGG | 0.505497 | 3_2:+20656685 | None:intergenic |
| TACACAGGGTTTCATATGGT+TGG | 0.511886 | 3_2:-20658055 | Msa0398690:CDS |
| TCCTCGAACTCTGGTACTCA+TGG | 0.513549 | 3_2:-20658177 | Msa0398690:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 3_2:-20658262 | Msa0398690:CDS |
| GTGTAGCTGCTTATTGAAGA+TGG | 0.516512 | 3_2:+20658073 | None:intergenic |
| TCTTCAATAAGCAGCTACAC+AGG | 0.519820 | 3_2:-20658070 | Msa0398690:CDS |
| GGGAGCTGAGAGCTACAATC+TGG | 0.526144 | 3_2:+20658149 | None:intergenic |
| ACACGCAACTACTAAGAACT+AGG | 0.532848 | 3_2:+20656019 | None:intergenic |
| TTTAGGGTTTCTTCGGAGCA+AGG | 0.536936 | 3_2:+20657895 | None:intergenic |
| GAGCCACGGCATGGTAGCCG+AGG | 0.537610 | 3_2:+20658128 | None:intergenic |
| TTTCTTGTGGCTCATGATTG+GGG | 0.538324 | 3_2:-20657989 | Msa0398690:CDS |
| AGGCAAAATGGAAGCTGAGA+TGG | 0.540634 | 3_2:-20656776 | Msa0398690:CDS |
| GCAAAGGTACCAACCAATGA+TGG | 0.541082 | 3_2:+20657964 | None:intergenic |
| GCTTATTGAAGATGGAGAAT+CGG | 0.544508 | 3_2:+20658081 | None:intergenic |
| TCTCCCTTGGGAAATATTGG+AGG | 0.546141 | 3_2:+20656697 | None:intergenic |
| ATTGTAGCTCTCAGCTCCCT+CGG | 0.548619 | 3_2:-20658145 | Msa0398690:CDS |
| CTCCCTCGGCTACCATGCCG+TGG | 0.565985 | 3_2:-20658131 | Msa0398690:CDS |
| GAGCTGATGGCACCATGGAA+TGG | 0.569405 | 3_2:-20656300 | Msa0398690:CDS |
| TGGTTCATACCACAGGAACC+AGG | 0.570796 | 3_2:-20656796 | Msa0398690:intron |
| GAAGGAATATATCCATGGTG+GGG | 0.572924 | 3_2:-20656208 | Msa0398690:CDS |
| GCCATGAGTACCAGAGTTCG+AGG | 0.573400 | 3_2:+20658176 | None:intergenic |
| ATTGGGGTGCCATCATTGGT+TGG | 0.574625 | 3_2:-20657973 | Msa0398690:CDS |
| TTAGGGTTTCTTCGGAGCAA+GGG | 0.576719 | 3_2:+20657896 | None:intergenic |
| TGAAGGAATATATCCATGGT+GGG | 0.577926 | 3_2:-20656209 | Msa0398690:CDS |
| TCACCTGTAATGAATTTCAC+AGG | 0.582821 | 3_2:+20656261 | None:intergenic |
| TGGTCCTCCAATATTTCCCA+AGG | 0.588717 | 3_2:-20656701 | Msa0398690:CDS |
| AAGGAATATATCCATGGTGG+GGG | 0.588801 | 3_2:-20656207 | Msa0398690:CDS |
| TCGTCTTCTGTAAGCCAAGA+GGG | 0.590014 | 3_2:+20656634 | None:intergenic |
| GAAGCTGAGATGGCTGAAGT+TGG | 0.590883 | 3_2:-20656766 | Msa0398690:CDS |
| CTTCAATAAGCAGCTACACA+GGG | 0.595237 | 3_2:-20658069 | Msa0398690:CDS |
| ATGGAATGGAGTGAAAATCA+AGG | 0.600933 | 3_2:-20656286 | Msa0398690:CDS |
| GTATGGAACTGGGTTCGACC+CGG | 0.604103 | 3_2:-20656674 | Msa0398690:CDS |
| GGAGATCAGGAGCCACGGCA+TGG | 0.605772 | 3_2:+20658119 | None:intergenic |
| AACTTGAAGGAATATATCCA+TGG | 0.609632 | 3_2:-20656213 | Msa0398690:CDS |
| CCAAGGGAGAGTATGGAACT+GGG | 0.609678 | 3_2:-20656684 | Msa0398690:CDS |
| TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 3_2:-20656313 | Msa0398690:intron |
| GAGAAAACAGGCTTCACTGG+AGG | 0.615767 | 3_2:-20656586 | Msa0398690:CDS |
| GGCTCAAAATAGCTTCCACA+AGG | 0.616485 | 3_2:-20655928 | Msa0398690:three_prime_UTR |
| AGCCACGGCATGGTAGCCGA+GGG | 0.617386 | 3_2:+20658129 | None:intergenic |
| GTAAGGTGTCAGGAGTATCC+GGG | 0.618284 | 3_2:+20656656 | None:intergenic |
| GGGAACACTGAGACAAACAT+AGG | 0.620100 | 3_2:+20657916 | None:intergenic |
| TTGAAGGAATATATCCATGG+TGG | 0.621968 | 3_2:-20656210 | Msa0398690:CDS |
| CAACAATCAAGAAGCAGCAG+AGG | 0.622672 | 3_2:-20656124 | Msa0398690:CDS |
| GCCACGGAGATCAGGAGCCA+CGG | 0.626919 | 3_2:+20658114 | None:intergenic |
| TGTATTATTGGTGACCCTTG+TGG | 0.632311 | 3_2:+20655913 | None:intergenic |
| ATATTCCTTCAAGTTTAGTG+AGG | 0.634199 | 3_2:+20656221 | None:intergenic |
| TTTCAGGGCGAAACGTGCAA+AGG | 0.634614 | 3_2:+20657948 | None:intergenic |
| AGCTGAGAGCTACAATCTGG+TGG | 0.640204 | 3_2:+20658152 | None:intergenic |
| ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 3_2:-20656305 | Msa0398690:CDS |
| AATCGGTGTCACCATAGCCA+CGG | 0.651627 | 3_2:+20658098 | None:intergenic |
| TGTTGATCAAGTGTTTCTTG+TGG | 0.654418 | 3_2:-20658002 | Msa0398690:CDS |
| GTCGTCTTCTGTAAGCCAAG+AGG | 0.663533 | 3_2:+20656633 | None:intergenic |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 3_2:-20658272 | Msa0398690:CDS |
| GGTCCTCCAATATTTCCCAA+GGG | 0.706108 | 3_2:-20656700 | Msa0398690:CDS |
| GAAAGTCTATAAGTGCAACA+AGG | 0.716399 | 3_2:+20658029 | None:intergenic |
| GCCGTGGCTCCTGATCTCCG+TGG | 0.726931 | 3_2:-20658115 | Msa0398690:CDS |
| GCTCAAAATAGCTTCCACAA+GGG | 0.771482 | 3_2:-20655927 | Msa0398690:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAACAAAACATAAAAA+CGG | - | chr3_2:20656593-20656612 | Msa0398690:CDS | 10.0% |
| !! | GTTAAATTAAATATATTATG+TGG | + | chr3_2:20656967-20656986 | None:intergenic | 10.0% |
| !! | TTGAATATAACAATATTTAT+AGG | + | chr3_2:20657887-20657906 | None:intergenic | 10.0% |
| !!! | ATACATTATTTAGAATTAAA+TGG | + | chr3_2:20658301-20658320 | None:intergenic | 10.0% |
| !! | TTATTATATATGTAGATTTC+AGG | - | chr3_2:20656428-20656447 | Msa0398690:intron | 15.0% |
| !! | GAAAATGTTTAATAGAATTT+AGG | - | chr3_2:20656523-20656542 | Msa0398690:intron | 15.0% |
| !!! | TATTTTAAATTTTGTGATCA+CGG | - | chr3_2:20656625-20656644 | Msa0398690:CDS | 15.0% |
| !!! | TCTATTTAATCTTTTTTTAG+TGG | - | chr3_2:20656711-20656730 | Msa0398690:CDS | 15.0% |
| !!! | ATGGAAATAAATTGTAATTT+TGG | + | chr3_2:20656905-20656924 | None:intergenic | 15.0% |
| !! | AAAATTACAATTTATTTCCA+TGG | - | chr3_2:20656904-20656923 | Msa0398690:intron | 15.0% |
| !! | TAATTTAGTGTTAAAATTTG+AGG | + | chr3_2:20656930-20656949 | None:intergenic | 15.0% |
| !! | GAGTAATATTGAATATATTA+GGG | - | chr3_2:20657183-20657202 | Msa0398690:intron | 15.0% |
| !! | TCTGATTCAAAATATTATAT+TGG | + | chr3_2:20657375-20657394 | None:intergenic | 15.0% |
| !!! | GAAATTTCAATATTTTGATG+TGG | + | chr3_2:20655912-20655931 | None:intergenic | 20.0% |
| !!! | ACTAATTTTACACTTTTGTT+TGG | - | chr3_2:20656469-20656488 | Msa0398690:intron | 20.0% |
| !! | TTTGGATATATTTATTCGAA+AGG | - | chr3_2:20656487-20656506 | Msa0398690:intron | 20.0% |
| !! | TATTTATTCGAAAGGATTTA+TGG | - | chr3_2:20656495-20656514 | Msa0398690:intron | 20.0% |
| !!! | ATTTAATCTTTTTTTAGTGG+TGG | - | chr3_2:20656714-20656733 | Msa0398690:CDS | 20.0% |
| !!! | ATATTATGTGGTTTAGAATA+TGG | + | chr3_2:20656955-20656974 | None:intergenic | 20.0% |
| !! | TTAATTTAACAGTCTAGATT+TGG | - | chr3_2:20656977-20656996 | Msa0398690:intron | 20.0% |
| !! | CGAGTAATATTGAATATATT+AGG | - | chr3_2:20657182-20657201 | Msa0398690:intron | 20.0% |
| !! | TTTGTTTATGTAAAAAGAAG+TGG | - | chr3_2:20657399-20657418 | Msa0398690:intron | 20.0% |
| !!! | TATATGTTGACAATACTTTT+TGG | - | chr3_2:20657768-20657787 | Msa0398690:intron | 20.0% |
| !! | ATAACAATATTTATAGGTGT+CGG | + | chr3_2:20657881-20657900 | None:intergenic | 20.0% |
| !! | AAATAATGTATGTATCTTTC+TGG | - | chr3_2:20658310-20658329 | Msa0398690:five_prime_UTR | 20.0% |
| ! | AAATAAAAAAACGAGAGAGA+TGG | - | chr3_2:20655963-20655982 | Msa0398690:three_prime_UTR | 25.0% |
| ! | AAAATGCATATTGCTGAAAA+AGG | - | chr3_2:20656024-20656043 | Msa0398690:three_prime_UTR | 25.0% |
| !! | GTTTAATAGAATTTAGGACA+TGG | - | chr3_2:20656529-20656548 | Msa0398690:intron | 25.0% |
| ! | AAATACCAATATTCGATTGA+AGG | - | chr3_2:20656654-20656673 | Msa0398690:CDS | 25.0% |
| ! | TAAATCCTTCAATCGAATAT+TGG | + | chr3_2:20656662-20656681 | None:intergenic | 25.0% |
| ! | TATTGAATATATTAGGGTAC+CGG | - | chr3_2:20657189-20657208 | Msa0398690:intron | 25.0% |
| ! | ATGATATGTAGCAAAAAGAA+AGG | + | chr3_2:20657299-20657318 | None:intergenic | 25.0% |
| !! | CTGAATAACATAATTGCTTT+TGG | - | chr3_2:20657443-20657462 | Msa0398690:intron | 25.0% |
| ! | ATTACTTGTATTGCAGAAAT+TGG | - | chr3_2:20657936-20657955 | Msa0398690:CDS | 25.0% |
| ! | TTACTTGTATTGCAGAAATT+GGG | - | chr3_2:20657937-20657956 | Msa0398690:CDS | 25.0% |
| ATTGCTGAAAAAGGAAAACA+AGG | - | chr3_2:20656033-20656052 | Msa0398690:three_prime_UTR | 30.0% | |
| !!! | TTCTGATTTTAGGGTTTCTT+CGG | + | chr3_2:20656374-20656393 | None:intergenic | 30.0% |
| !! | CATCAACAGTTCTGATTTTA+GGG | + | chr3_2:20656383-20656402 | None:intergenic | 30.0% |
| AAATTGAAACCAACATCCAT+GGG | + | chr3_2:20656846-20656865 | None:intergenic | 30.0% | |
| AGTATAGTCTAGATCAAAAG+AGG | - | chr3_2:20657078-20657097 | Msa0398690:intron | 30.0% | |
| TCATGCAATACTAAAGTTGA+TGG | + | chr3_2:20657238-20657257 | None:intergenic | 30.0% | |
| AGTATTGCATGACTTCATAA+TGG | - | chr3_2:20657246-20657265 | Msa0398690:intron | 30.0% | |
| GGTCATACTTCAAAATTTAG+AGG | + | chr3_2:20657323-20657342 | None:intergenic | 30.0% | |
| !! | GATACGATTCATTTTGAGTA+GGG | + | chr3_2:20657344-20657363 | None:intergenic | 30.0% |
| !! | TTTTGGAGACAAAATAAGCA+AGG | + | chr3_2:20657651-20657670 | None:intergenic | 30.0% |
| TTTCAAATTGAAGATGTGTC+TGG | - | chr3_2:20657835-20657854 | Msa0398690:CDS | 30.0% | |
| AATGCATCTTTCATTACTAG+TGG | + | chr3_2:20657916-20657935 | None:intergenic | 30.0% | |
| ! | ATATTCCTTCAAGTTTAGTG+AGG | + | chr3_2:20658041-20658060 | None:intergenic | 30.0% |
| AACTTGAAGGAATATATCCA+TGG | - | chr3_2:20658046-20658065 | Msa0398690:CDS | 30.0% | |
| AAAAAAACGAGAGAGATGGA+AGG | - | chr3_2:20655967-20655986 | Msa0398690:three_prime_UTR | 35.0% | |
| CCATGAAGAAACAAGACAAT+TGG | + | chr3_2:20656060-20656079 | None:intergenic | 35.0% | |
| !! | CCAATTGTCTTGTTTCTTCA+TGG | - | chr3_2:20656057-20656076 | Msa0398690:three_prime_UTR | 35.0% |
| GCTTATTGAAGATGGAGAAT+CGG | + | chr3_2:20656181-20656200 | None:intergenic | 35.0% | |
| GAAAGTCTATAAGTGCAACA+AGG | + | chr3_2:20656233-20656252 | None:intergenic | 35.0% | |
| GTTGCACTTATAGACTTTCT+AGG | - | chr3_2:20656234-20656253 | Msa0398690:CDS | 35.0% | |
| TGTTGATCAAGTGTTTCTTG+TGG | - | chr3_2:20656257-20656276 | Msa0398690:CDS | 35.0% | |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr3_2:20656329-20656348 | None:intergenic | 35.0% |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr3_2:20656330-20656349 | None:intergenic | 35.0% |
| !! | CCATCAACAGTTCTGATTTT+AGG | + | chr3_2:20656384-20656403 | None:intergenic | 35.0% |
| CCTAAAATCAGAACTGTTGA+TGG | - | chr3_2:20656381-20656400 | Msa0398690:intron | 35.0% | |
| !!! | AATCTTTTTTTAGTGGTGGC+CGG | - | chr3_2:20656718-20656737 | Msa0398690:CDS | 35.0% |
| CATAATATATGCAAGATCCG+AGG | + | chr3_2:20656752-20656771 | None:intergenic | 35.0% | |
| GAAATTGAAACCAACATCCA+TGG | + | chr3_2:20656847-20656866 | None:intergenic | 35.0% | |
| ! | AGTGTTAAAATTTGAGGCCA+TGG | + | chr3_2:20656924-20656943 | None:intergenic | 35.0% |
| GATCAAAAGAGGAAACCTTA+TGG | - | chr3_2:20657089-20657108 | Msa0398690:intron | 35.0% | |
| GAATTAACCGATCAACCATA+AGG | + | chr3_2:20657107-20657126 | None:intergenic | 35.0% | |
| CCAAAATAAGACAACTTGAC+CGG | + | chr3_2:20657211-20657230 | None:intergenic | 35.0% | |
| !!! | CGGTCAAGTTGTCTTATTTT+GGG | - | chr3_2:20657209-20657228 | Msa0398690:intron | 35.0% |
| !! | CGATACGATTCATTTTGAGT+AGG | + | chr3_2:20657345-20657364 | None:intergenic | 35.0% |
| GTCTCCAAAATTGAGAAAAC+AGG | - | chr3_2:20657661-20657680 | Msa0398690:intron | 35.0% | |
| ! | GAAGCCTGTTTTCTCAATTT+TGG | + | chr3_2:20657668-20657687 | None:intergenic | 35.0% |
| TATTTGTCGAAAACAACACG+AGG | + | chr3_2:20657750-20657769 | None:intergenic | 35.0% | |
| ! | TTGATTTTCACTCCATTCCA+TGG | + | chr3_2:20657974-20657993 | None:intergenic | 35.0% |
| ATGGAATGGAGTGAAAATCA+AGG | - | chr3_2:20657973-20657992 | Msa0398690:CDS | 35.0% | |
| GTACCTGTGAAATTCATTAC+AGG | - | chr3_2:20657995-20658014 | Msa0398690:CDS | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | + | chr3_2:20658001-20658020 | None:intergenic | 35.0% | |
| ATACACCTCACTAAACTTGA+AGG | - | chr3_2:20658033-20658052 | Msa0398690:CDS | 35.0% | |
| TTGAAGGAATATATCCATGG+TGG | - | chr3_2:20658049-20658068 | Msa0398690:CDS | 35.0% | |
| TGAAGGAATATATCCATGGT+GGG | - | chr3_2:20658050-20658069 | Msa0398690:CDS | 35.0% | |
| ACAATCACTTCTTCCAGATT+GGG | + | chr3_2:20658094-20658113 | None:intergenic | 35.0% | |
| GAAGAAGTGATTGTCCAAAA+AGG | - | chr3_2:20658100-20658119 | Msa0398690:CDS | 35.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr3_2:20655987-20656006 | Msa0398690:three_prime_UTR | 40.0% | |
| GTGTAGCTGCTTATTGAAGA+TGG | + | chr3_2:20656189-20656208 | None:intergenic | 40.0% | |
| TCTTCAATAAGCAGCTACAC+AGG | - | chr3_2:20656189-20656208 | Msa0398690:CDS | 40.0% | |
| CTTCAATAAGCAGCTACACA+GGG | - | chr3_2:20656190-20656209 | Msa0398690:CDS | 40.0% | |
| TACACAGGGTTTCATATGGT+TGG | - | chr3_2:20656204-20656223 | Msa0398690:CDS | 40.0% | |
| TGTTTCTTGTGGCTCATGAT+TGG | - | chr3_2:20656268-20656287 | Msa0398690:CDS | 40.0% | |
| GTTTCTTGTGGCTCATGATT+GGG | - | chr3_2:20656269-20656288 | Msa0398690:CDS | 40.0% | |
| TTTCTTGTGGCTCATGATTG+GGG | - | chr3_2:20656270-20656289 | Msa0398690:CDS | 40.0% | |
| !!! | ATCTTTTTTTAGTGGTGGCC+GGG | - | chr3_2:20656719-20656738 | Msa0398690:CDS | 40.0% |
| ! | ATTTTTCTCCCATAGTCCCA+TGG | - | chr3_2:20656827-20656846 | Msa0398690:intron | 40.0% |
| TCTCCTTTCATGTGAGAGAT+CGG | - | chr3_2:20656865-20656884 | Msa0398690:intron | 40.0% | |
| TACCTTACGCCTGATGTTAA+TGG | - | chr3_2:20657011-20657030 | Msa0398690:intron | 40.0% | |
| ATCCATTAACATCAGGCGTA+AGG | + | chr3_2:20657016-20657035 | None:intergenic | 40.0% | |
| GAGTCAGATCCATTAACATC+AGG | + | chr3_2:20657023-20657042 | None:intergenic | 40.0% | |
| GAGGAAACCTTATGGTTGAT+CGG | - | chr3_2:20657097-20657116 | Msa0398690:intron | 40.0% | |
| !!! | CCGGTCAAGTTGTCTTATTT+TGG | - | chr3_2:20657208-20657227 | Msa0398690:intron | 40.0% |
| !!! | TTGCTTTTGGTTCATACCAC+AGG | - | chr3_2:20657456-20657475 | Msa0398690:intron | 40.0% |
| TAAAAAATGCCCTCACAGCT+CGG | - | chr3_2:20657530-20657549 | Msa0398690:intron | 40.0% | |
| TACTCTCCCTTGGGAAATAT+TGG | + | chr3_2:20657568-20657587 | None:intergenic | 40.0% | |
| ATATTTCCCAAGGGAGAGTA+TGG | - | chr3_2:20657568-20657587 | Msa0398690:intron | 40.0% | |
| ATTGAGAAAACAGGCTTCAC+TGG | - | chr3_2:20657670-20657689 | Msa0398690:intron | 40.0% | |
| GAAGGAATATATCCATGGTG+GGG | - | chr3_2:20658051-20658070 | Msa0398690:CDS | 40.0% | |
| AAGGAATATATCCATGGTGG+GGG | - | chr3_2:20658052-20658071 | Msa0398690:CDS | 40.0% | |
| GACAATCACTTCTTCCAGAT+TGG | + | chr3_2:20658095-20658114 | None:intergenic | 40.0% | |
| AGTGATTGTCCAAAAAGGAG+TGG | - | chr3_2:20658105-20658124 | Msa0398690:CDS | 40.0% | |
| ACACGCAACTACTAAGAACT+AGG | + | chr3_2:20658243-20658262 | None:intergenic | 40.0% | |
| GCTCAAAATAGCTTCCACAA+GGG | - | chr3_2:20658332-20658351 | Msa0398690:five_prime_UTR | 40.0% | |
| ! | TGTATTATTGGTGACCCTTG+TGG | + | chr3_2:20658349-20658368 | None:intergenic | 40.0% |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr3_2:20655997-20656016 | Msa0398690:three_prime_UTR | 45.0% | |
| CAGCTACACAGGGTTTCATA+TGG | - | chr3_2:20656200-20656219 | Msa0398690:CDS | 45.0% | |
| !! | GCAAAGGTACCAACCAATGA+TGG | + | chr3_2:20656298-20656317 | None:intergenic | 45.0% |
| GGGAACACTGAGACAAACAT+AGG | + | chr3_2:20656346-20656365 | None:intergenic | 45.0% | |
| TTAGGGTTTCTTCGGAGCAA+GGG | + | chr3_2:20656366-20656385 | None:intergenic | 45.0% | |
| ! | TTTAGGGTTTCTTCGGAGCA+AGG | + | chr3_2:20656367-20656386 | None:intergenic | 45.0% |
| !!! | TCTTTTTTTAGTGGTGGCCG+GGG | - | chr3_2:20656720-20656739 | Msa0398690:CDS | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | + | chr3_2:20656781-20656800 | None:intergenic | 45.0% |
| ACCAACATCCATGGGACTAT+GGG | + | chr3_2:20656838-20656857 | None:intergenic | 45.0% | |
| AACCAACATCCATGGGACTA+TGG | + | chr3_2:20656839-20656858 | None:intergenic | 45.0% | |
| ! | ATCTCAGCTTCCATTTTGCC+TGG | + | chr3_2:20657484-20657503 | None:intergenic | 45.0% |
| AGGCAAAATGGAAGCTGAGA+TGG | - | chr3_2:20657483-20657502 | Msa0398690:intron | 45.0% | |
| TGGTCCTCCAATATTTCCCA+AGG | - | chr3_2:20657558-20657577 | Msa0398690:intron | 45.0% | |
| GGTCCTCCAATATTTCCCAA+GGG | - | chr3_2:20657559-20657578 | Msa0398690:intron | 45.0% | |
| TCTCCCTTGGGAAATATTGG+AGG | + | chr3_2:20657565-20657584 | None:intergenic | 45.0% | |
| TTCTGTAAGCCAAGAGGGTA+AGG | + | chr3_2:20657623-20657642 | None:intergenic | 45.0% | |
| TCGTCTTCTGTAAGCCAAGA+GGG | + | chr3_2:20657628-20657647 | None:intergenic | 45.0% | |
| TTGCAGAAATTGGGAGCTGA+TGG | - | chr3_2:20657946-20657965 | Msa0398690:CDS | 45.0% | |
| CAAAGAAGATGTGCCCAATC+TGG | - | chr3_2:20658078-20658097 | Msa0398690:CDS | 45.0% | |
| CAACAATCAAGAAGCAGCAG+AGG | - | chr3_2:20658135-20658154 | Msa0398690:CDS | 45.0% | |
| GGCTCAAAATAGCTTCCACA+AGG | - | chr3_2:20658331-20658350 | Msa0398690:five_prime_UTR | 45.0% | |
| TTCATGGCTTCCTCGAACTC+TGG | - | chr3_2:20656073-20656092 | Msa0398690:exon | 50.0% | |
| TCCTCGAACTCTGGTACTCA+TGG | - | chr3_2:20656082-20656101 | Msa0398690:exon | 50.0% | |
| AGCTGAGAGCTACAATCTGG+TGG | + | chr3_2:20656110-20656129 | None:intergenic | 50.0% | |
| ATTGTAGCTCTCAGCTCCCT+CGG | - | chr3_2:20656114-20656133 | Msa0398690:CDS | 50.0% | |
| !! | AATCGGTGTCACCATAGCCA+CGG | + | chr3_2:20656164-20656183 | None:intergenic | 50.0% |
| ! | CATGATTGGGGTGCCATCAT+TGG | - | chr3_2:20656282-20656301 | Msa0398690:CDS | 50.0% |
| ! | ATTGGGGTGCCATCATTGGT+TGG | - | chr3_2:20656286-20656305 | Msa0398690:CDS | 50.0% |
| TTTCAGGGCGAAACGTGCAA+AGG | + | chr3_2:20656314-20656333 | None:intergenic | 50.0% | |
| AAGATCCGAGGTTCAAACCC+CGG | + | chr3_2:20656740-20656759 | None:intergenic | 50.0% | |
| GTGAGCTTAGCTCAGTTGGT+AGG | + | chr3_2:20656782-20656801 | None:intergenic | 50.0% | |
| CCTTGTGAGCTTAGCTCAGT+TGG | + | chr3_2:20656786-20656805 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCACA+AGG | - | chr3_2:20656783-20656802 | Msa0398690:CDS | 50.0% | |
| TCCCATAGTCCCATGGATGT+TGG | - | chr3_2:20656834-20656853 | Msa0398690:intron | 50.0% | |
| ! | GCACCGATCTCTCACATGAA+AGG | + | chr3_2:20656871-20656890 | None:intergenic | 50.0% |
| TGGTTCATACCACAGGAACC+AGG | - | chr3_2:20657463-20657482 | Msa0398690:intron | 50.0% | |
| ACCACAGGAACCAGGCAAAA+TGG | - | chr3_2:20657471-20657490 | Msa0398690:intron | 50.0% | |
| ! | TCCATTTTGCCTGGTTCCTG+TGG | + | chr3_2:20657475-20657494 | None:intergenic | 50.0% |
| GAAGCTGAGATGGCTGAAGT+TGG | - | chr3_2:20657493-20657512 | Msa0398690:intron | 50.0% | |
| ! | ACCAGTTTTCCGAGCTGTGA+GGG | + | chr3_2:20657542-20657561 | None:intergenic | 50.0% |
| CCAGTTCCATACTCTCCCTT+GGG | + | chr3_2:20657577-20657596 | None:intergenic | 50.0% | |
| ! | CCAAGGGAGAGTATGGAACT+GGG | - | chr3_2:20657575-20657594 | Msa0398690:intron | 50.0% |
| !! | GTAAGGTGTCAGGAGTATCC+GGG | + | chr3_2:20657606-20657625 | None:intergenic | 50.0% |
| !! | GGTAAGGTGTCAGGAGTATC+CGG | + | chr3_2:20657607-20657626 | None:intergenic | 50.0% |
| GTCGTCTTCTGTAAGCCAAG+AGG | + | chr3_2:20657629-20657648 | None:intergenic | 50.0% | |
| GAGAAAACAGGCTTCACTGG+AGG | - | chr3_2:20657673-20657692 | Msa0398690:intron | 50.0% | |
| CTTCTTTGAATCCCCCACCA+TGG | + | chr3_2:20658066-20658085 | None:intergenic | 50.0% | |
| ! | TGTAGTGCGCCACTCCTTTT+TGG | + | chr3_2:20658117-20658136 | None:intergenic | 50.0% |
| GCCATGAGTACCAGAGTTCG+AGG | + | chr3_2:20656086-20656105 | None:intergenic | 55.0% | |
| GGGAGCTGAGAGCTACAATC+TGG | + | chr3_2:20656113-20656132 | None:intergenic | 55.0% | |
| TCACCATAGCCACGGAGATC+AGG | + | chr3_2:20656156-20656175 | None:intergenic | 55.0% | |
| !! | GATGGCATGCGTGCTGCTTA+TGG | - | chr3_2:20656399-20656418 | Msa0398690:intron | 55.0% |
| ! | GACCAGTTTTCCGAGCTGTG+AGG | + | chr3_2:20657543-20657562 | None:intergenic | 55.0% |
| ! | CCCAAGGGAGAGTATGGAAC+TGG | - | chr3_2:20657574-20657593 | Msa0398690:intron | 55.0% |
| CCCAGTTCCATACTCTCCCT+TGG | + | chr3_2:20657578-20657597 | None:intergenic | 55.0% | |
| GTATGGAACTGGGTTCGACC+CGG | - | chr3_2:20657585-20657604 | Msa0398690:intron | 55.0% | |
| CTCCTGACACCTTACCCTCT+TGG | - | chr3_2:20657611-20657630 | Msa0398690:intron | 55.0% | |
| ! | AGCCAAGAGGGTAAGGTGTC+AGG | + | chr3_2:20657616-20657635 | None:intergenic | 55.0% |
| ATTGGGAGCTGATGGCACCA+TGG | - | chr3_2:20657954-20657973 | Msa0398690:CDS | 55.0% | |
| GAGCTGATGGCACCATGGAA+TGG | - | chr3_2:20657959-20657978 | Msa0398690:CDS | 55.0% | |
| GCTCCTGATCTCCGTGGCTA+TGG | - | chr3_2:20656150-20656169 | Msa0398690:CDS | 60.0% | |
| GCCCTCACAGCTCGGAAAAC+TGG | - | chr3_2:20657538-20657557 | Msa0398690:intron | 60.0% | |
| AGCCACGGCATGGTAGCCGA+GGG | + | chr3_2:20656133-20656152 | None:intergenic | 65.0% | |
| GGAGATCAGGAGCCACGGCA+TGG | + | chr3_2:20656143-20656162 | None:intergenic | 65.0% | |
| GCCACGGAGATCAGGAGCCA+CGG | + | chr3_2:20656148-20656167 | None:intergenic | 65.0% | |
| GGTGGCCGGGGTTTGAACCT+CGG | - | chr3_2:20656732-20656751 | Msa0398690:CDS | 65.0% | |
| CTCCCTCGGCTACCATGCCG+TGG | - | chr3_2:20656128-20656147 | Msa0398690:CDS | 70.0% | |
| GAGCCACGGCATGGTAGCCG+AGG | + | chr3_2:20656134-20656153 | None:intergenic | 70.0% | |
| GCCGTGGCTCCTGATCTCCG+TGG | - | chr3_2:20656144-20656163 | Msa0398690:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 20655906 | 20658375 | 20655906 | ID=Msa0398690;Name=Msa0398690 |
| chr3_2 | mRNA | 20655906 | 20658375 | 20655906 | ID=Msa0398690-mRNA-1;Parent=Msa0398690;Name=Msa0398690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=76|1|1|1|1|1|3|177|319 |
| chr3_2 | exon | 20655906 | 20656329 | 20655906 | ID=Msa0398690-mRNA-1:exon:4501;Parent=Msa0398690-mRNA-1 |
| chr3_2 | exon | 20656559 | 20656803 | 20656559 | ID=Msa0398690-mRNA-1:exon:4500;Parent=Msa0398690-mRNA-1 |
| chr3_2 | exon | 20657832 | 20658375 | 20657832 | ID=Msa0398690-mRNA-1:exon:4499;Parent=Msa0398690-mRNA-1 |
| chr3_2 | five_prime_UTR | 20658300 | 20658375 | 20658300 | ID=Msa0398690-mRNA-1:five_prime_utr;Parent=Msa0398690-mRNA-1 |
| chr3_2 | CDS | 20657832 | 20658299 | 20657832 | ID=Msa0398690-mRNA-1:cds;Parent=Msa0398690-mRNA-1 |
| chr3_2 | CDS | 20656559 | 20656803 | 20656559 | ID=Msa0398690-mRNA-1:cds;Parent=Msa0398690-mRNA-1 |
| chr3_2 | CDS | 20656083 | 20656329 | 20656083 | ID=Msa0398690-mRNA-1:cds;Parent=Msa0398690-mRNA-1 |
| chr3_2 | three_prime_UTR | 20655906 | 20656082 | 20655906 | ID=Msa0398690-mRNA-1:three_prime_utr;Parent=Msa0398690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
