AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412360 MtrunA17_Chr5g0398531 97.846 325 3 2 1 321 1 325 0.0 630
Msa1412360 MtrunA17_Chr8g0351651 58.982 334 83 12 1 314 1 300 4.47e-90 271
Msa1412360 MtrunA17_Chr5g0443311 62.727 220 69 2 41 259 5 212 2.94e-78 239
Msa1412360 MtrunA17_Chr1g0168121 73.885 157 41 0 91 247 35 191 1.11e-68 215
Msa1412360 MtrunA17_Chr1g0190051 65.761 184 62 1 92 275 68 250 1.28e-68 216
Msa1412360 MtrunA17_Chr7g0250031 68.874 151 47 0 107 257 66 216 1.13e-65 207
Msa1412360 MtrunA17_Chr3g0112131 53.125 224 78 4 108 314 89 302 2.65e-65 208
Msa1412360 MtrunA17_Chr4g0054651 61.275 204 70 2 47 250 34 228 5.69e-65 206
Msa1412360 MtrunA17_Chr3g0133051 50.802 187 86 3 91 273 67 251 3.84e-58 189
Msa1412360 MtrunA17_Chr5g0435681 52.358 212 95 2 40 247 29 238 2.06e-54 180
Msa1412360 MtrunA17_Chr5g0427311 46.018 226 94 6 30 250 6 208 6.91e-48 160
Msa1412360 MtrunA17_Chr1g0186441 42.132 197 60 3 91 279 58 208 7.00e-36 130
Msa1412360 MtrunA17_Chr3g0094471 41.040 173 76 2 98 244 55 227 7.93e-32 120
Msa1412360 MtrunA17_Chr5g0441851 39.456 147 78 2 97 232 76 222 1.96e-30 115
Msa1412360 MtrunA17_Chr4g0028181 30.918 207 133 3 97 293 50 256 1.96e-24 100
Msa1412360 MtrunA17_Chr5g0397551 37.427 171 94 5 98 256 104 273 3.11e-24 100
Msa1412360 MtrunA17_Chr5g0441901 35.333 150 87 2 97 237 74 222 3.51e-23 95.9
Msa1412360 MtrunA17_Chr4g0028211 34.161 161 96 3 97 247 35 195 4.87e-23 95.5
Msa1412360 MtrunA17_Chr1g0161621 35.329 167 92 5 93 245 96 260 3.06e-22 94.7
Msa1412360 MtrunA17_Chr1g0175001 32.099 162 101 2 95 247 82 243 9.50e-22 93.2
Msa1412360 MtrunA17_Chr5g0441441 37.162 148 87 1 98 239 50 197 3.24e-21 90.5
Msa1412360 MtrunA17_Chr1g0179461 41.600 125 69 2 128 248 148 272 4.97e-21 92.4
Msa1412360 MtrunA17_Chr1g0190011 35.833 120 76 1 120 238 104 223 1.42e-19 87.8
Msa1412360 MtrunA17_Chr6g0476061 42.241 116 64 2 125 237 130 245 2.13e-19 87.0
Msa1412360 MtrunA17_Chr4g0054661 35.583 163 80 5 87 237 107 256 1.89e-18 84.7
Msa1412360 MtrunA17_Chr1g0188211 39.264 163 77 5 95 237 88 248 2.83e-18 84.3
Msa1412360 MtrunA17_Chr1g0186461 42.000 150 39 4 98 247 52 153 3.03e-18 81.3
Msa1412360 MtrunA17_Chr8g0386741 38.710 124 72 3 117 237 158 280 6.92e-18 83.2
Msa1412360 MtrunA17_Chr8g0351761 43.860 114 60 1 128 237 145 258 1.02e-16 79.7
Msa1412360 MtrunA17_Chr4g0034501 38.542 96 59 0 97 192 33 128 2.01e-16 75.9
Msa1412360 MtrunA17_Chr7g0247431 30.769 169 108 3 98 260 127 292 3.79e-16 78.2
Msa1412360 MtrunA17_Chr7g0274821 37.288 118 74 0 120 237 138 255 4.27e-16 78.2
Msa1412360 MtrunA17_Chr7g0245841 49.254 67 34 0 128 194 130 196 8.45e-16 77.0
Msa1412360 MtrunA17_Chr8g0374021 34.507 142 71 4 129 251 5 143 5.98e-15 71.2
Msa1412360 MtrunA17_Chr8g0349091 37.671 146 85 2 98 237 125 270 2.49e-14 72.8
Msa1412360 MtrunA17_Chr4g0056761 49.254 67 34 0 128 194 147 213 1.28e-13 70.5
Msa1412360 MtrunA17_Chr5g0398621 32.258 124 77 2 128 244 100 223 1.67e-13 69.3
Msa1412360 MtrunA17_Chr4g0027351 41.346 104 59 2 128 229 22 125 2.67e-13 66.2
Msa1412360 MtrunA17_Chr4g0027331 38.983 118 62 3 128 237 22 137 2.42e-12 63.5
Msa1412360 MtrunA17_Chr4g0027371 38.793 116 65 2 128 237 22 137 3.23e-12 65.5
Msa1412360 MtrunA17_Chr6g0476241 35.135 111 70 2 128 238 180 288 2.36e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412360 AT4G22810.1 55.429 350 101 12 1 321 1 324 1.55e-79 245
Msa1412360 AT2G45430.1 56.250 336 113 11 1 321 1 317 2.74e-75 234
Msa1412360 AT4G12050.1 64.469 273 74 6 1 251 1 272 3.83e-75 234
Msa1412360 AT2G42940.1 68.293 164 52 0 96 259 51 214 1.52e-71 222
Msa1412360 AT2G35270.1 69.872 156 47 0 96 251 76 231 6.04e-71 222
Msa1412360 AT3G60870.1 57.082 233 79 5 91 321 52 265 1.56e-69 218
Msa1412360 AT4G14465.1 54.894 235 89 5 91 321 60 281 2.24e-68 215
Msa1412360 AT1G76500.1 65.244 164 48 1 95 249 69 232 2.98e-63 202
Msa1412360 AT3G04570.1 69.697 165 42 1 91 247 73 237 3.98e-63 202
Msa1412360 AT4G17800.1 63.584 173 51 1 107 267 91 263 4.89e-63 202
Msa1412360 AT5G49700.1 47.449 196 88 4 96 281 54 244 1.39e-56 184
Msa1412360 AT4G35390.1 72.667 150 39 1 98 245 63 212 2.80e-55 182
Msa1412360 AT3G55560.1 64.583 144 50 1 105 247 95 238 4.47e-50 169
Msa1412360 AT1G20900.1 67.296 159 43 1 98 247 86 244 5.16e-50 169
Msa1412360 AT1G14490.2 44.751 181 91 3 99 272 25 203 6.38e-41 142
Msa1412360 AT1G14490.1 44.751 181 91 3 99 272 6 184 1.03e-40 141
Msa1412360 AT1G63470.1 42.466 146 77 3 98 237 147 291 3.62e-25 104
Msa1412360 AT5G62260.2 40.000 140 78 3 111 245 145 283 2.92e-23 97.8
Msa1412360 AT5G62260.1 42.424 132 70 3 111 237 145 275 1.54e-22 97.4
Msa1412360 AT5G62260.3 42.424 132 70 3 111 237 145 275 1.54e-22 97.4
Msa1412360 AT5G51590.1 43.363 113 61 1 128 237 181 293 6.73e-22 95.9
Msa1412360 AT4G12080.1 41.593 113 63 1 128 237 173 285 3.26e-21 93.2
Msa1412360 AT2G33620.1 40.260 154 82 3 87 237 132 278 3.99e-21 92.8
Msa1412360 AT2G33620.4 40.260 154 82 3 87 237 132 278 3.99e-21 92.8
Msa1412360 AT2G33620.2 40.260 154 82 3 87 237 132 278 3.99e-21 92.8
Msa1412360 AT2G33620.3 40.260 154 82 3 87 237 132 278 3.99e-21 92.8
Msa1412360 AT4G25320.1 41.593 113 63 1 128 237 169 281 8.62e-21 92.4
Msa1412360 AT4G17950.1 37.821 156 90 3 87 237 185 338 1.44e-20 92.0
Msa1412360 AT3G04590.2 36.364 110 70 0 128 237 174 283 7.40e-20 89.7
Msa1412360 AT3G04590.1 36.364 110 70 0 128 237 174 283 2.13e-19 87.4
Msa1412360 AT2G45850.1 36.538 156 81 5 98 241 132 281 2.89e-18 84.7
Msa1412360 AT2G45850.2 36.538 156 81 5 98 241 132 281 2.89e-18 84.7
Msa1412360 AT1G63480.5 30.846 201 117 5 98 279 124 321 6.47e-18 83.6
Msa1412360 AT1G63480.7 30.846 201 117 5 98 279 124 321 6.47e-18 83.6
Msa1412360 AT1G63480.4 30.846 201 117 5 98 279 124 321 6.47e-18 83.6
Msa1412360 AT1G63480.3 30.846 201 117 5 98 279 124 321 6.47e-18 83.6
Msa1412360 AT1G63480.6 30.846 201 117 5 98 279 124 321 6.47e-18 83.6
Msa1412360 AT1G63480.2 30.846 201 117 5 98 279 130 327 7.86e-18 83.6
Msa1412360 AT1G63480.1 30.846 201 117 5 98 279 130 327 7.86e-18 83.6
Msa1412360 AT2G45850.3 35.948 153 80 5 98 238 132 278 3.13e-17 80.9
Msa1412360 AT4G00200.2 43.363 113 61 1 128 237 126 238 1.26e-15 76.6
Msa1412360 AT4G00200.1 43.363 113 61 1 128 237 126 238 1.26e-15 76.6
Msa1412360 AT5G46640.1 38.514 148 86 2 93 237 150 295 1.59e-13 71.2
Msa1412360 AT4G22770.2 38.938 113 66 1 128 237 153 265 2.03e-13 70.5
Msa1412360 AT4G22770.1 38.938 113 66 1 128 237 153 265 2.03e-13 70.5
Msa1412360 AT3G61310.1 32.877 146 92 2 98 237 134 279 2.05e-12 67.4

Find 93 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTGCTTTGATTGCTTC+TGG 0.209013 tig0023889:-33235 Msa1412360:CDS
CCTGCTCCGCCCGCTGCTTC+TGG 0.230880 tig0023889:-33310 Msa1412360:CDS
GTTGCTGCTGTTGGTGTTGA+TGG 0.289751 tig0023889:+33824 None:intergenic
TTAAGATTAGGATTAGAATT+AGG 0.294967 tig0023889:+33016 None:intergenic
GGAGCTGTTGTTACACTTCA+TGG 0.313521 tig0023889:-33376 Msa1412360:CDS
GTGATAATAATCGGTGGTTT+TGG 0.328875 tig0023889:+33565 None:intergenic
AGATGCCTTCTGATAATTTC+TGG 0.330543 tig0023889:-32976 Msa1412360:CDS
GTTGTTGGTGGAAGTGTTGT+TGG 0.349227 tig0023889:-33253 Msa1412360:CDS
CCAGAAGCAGCGGGCGGAGC+AGG 0.354965 tig0023889:+33310 None:intergenic
GATCCAGCTGGTCTTCCTCT+TGG 0.365755 tig0023889:+33598 None:intergenic
TTCGAGATTCTTTCGCTGGC+TGG 0.370912 tig0023889:-33349 Msa1412360:CDS
TTGTCCGCCCGCTAAATATA+TGG 0.390502 tig0023889:+33282 None:intergenic
ACCTCCTCCGGATTCTAACT+TGG 0.395394 tig0023889:+33657 None:intergenic
AATCTTAATCCTAATCTTCT+CGG 0.405395 tig0023889:-33001 Msa1412360:CDS
GAATCCGGAGGAGGTGGTTC+CGG 0.408435 tig0023889:-33649 Msa1412360:CDS
GGCGGACAAGGGCAGGTTGT+TGG 0.415663 tig0023889:-33268 Msa1412360:CDS
GCAGCGGGCGGAGCAGGTGG+TGG 0.424575 tig0023889:+33316 None:intergenic
TGCTTATGAGAGACTTCCTT+TGG 0.425099 tig0023889:-33176 Msa1412360:CDS
AGAAGATTAGGATTAAGATT+AGG 0.426727 tig0023889:+33004 None:intergenic
TCTTCTATTCAACAACTTCA+AGG 0.427876 tig0023889:-33139 Msa1412360:CDS
CTAAGGCAACCGGCTTCTCC+TGG 0.438533 tig0023889:-33397 Msa1412360:CDS
GGTGGTTCTCCAAGTGGTGG+TGG 0.441214 tig0023889:-33106 Msa1412360:CDS
GGTGCTGTTGTTGCTGCTGT+TGG 0.446147 tig0023889:+33815 None:intergenic
CTTCCTTTGGAAGATGATGA+TGG 0.447229 tig0023889:-33163 Msa1412360:CDS
CTTCAAGGTGGTGGTGGTGG+TGG 0.447916 tig0023889:-33124 Msa1412360:CDS
TCTGATAATTTCTGGCCAAC+CGG 0.452010 tig0023889:-32968 Msa1412360:CDS
CCTCCTCCGGATTCTAACTT+GGG 0.455968 tig0023889:+33658 None:intergenic
AGCGGAAGTAGCAGCGGCGG+TGG 0.456861 tig0023889:-33739 Msa1412360:CDS
GGCATCTGACCGAGAAGATT+AGG 0.459191 tig0023889:+32992 None:intergenic
GCTGTAAAGTGTGGAATTGA+TGG 0.472588 tig0023889:+33794 None:intergenic
GGTTCTCCAAGTGGTGGTGG+TGG 0.480891 tig0023889:-33103 Msa1412360:CDS
AAGGTTCGAGATTCTTTCGC+TGG 0.482991 tig0023889:-33353 Msa1412360:CDS
CAACTTCAAGGTGGTGGTGG+TGG 0.483443 tig0023889:-33127 Msa1412360:CDS
GAAGCAGACATAATAACAAC+AGG 0.487835 tig0023889:+33211 None:intergenic
AAACGTGACACTAAGGCAAC+CGG 0.494419 tig0023889:-33407 Msa1412360:CDS
TTTAGCCCCAAGTTAGAATC+CGG 0.494865 tig0023889:-33664 Msa1412360:CDS
TGATGCAAACGCCTCTTTGA+CGG 0.495629 tig0023889:+33452 None:intergenic
ATATATTTAGCGGGCGGACA+AGG 0.504387 tig0023889:-33280 Msa1412360:CDS
AGACCAAGAGGAAGACCAGC+TGG 0.509576 tig0023889:-33601 Msa1412360:CDS
AGATTAGGATTAGAATTAGG+AGG 0.514675 tig0023889:+33019 None:intergenic
CGCCTTGAAAACTCATGTGA+TGG 0.515478 tig0023889:-33527 Msa1412360:CDS
CATTGAATCCGTGTCGCCAC+CGG 0.518639 tig0023889:+33630 None:intergenic
GCCACCGGAACCACCTCCTC+CGG 0.519443 tig0023889:+33645 None:intergenic
TGGTTTGACCATATATTTAG+CGG 0.520577 tig0023889:-33290 Msa1412360:CDS
GTTTGCATCATGAGTGGGAC+AGG 0.526109 tig0023889:-33439 Msa1412360:CDS
GGTTTGACCATATATTTAGC+GGG 0.527226 tig0023889:-33289 Msa1412360:CDS
TTTAGCGGGCGGACAAGGGC+AGG 0.528930 tig0023889:-33275 Msa1412360:CDS
CAATATCATCATGATCAATA+CGG 0.533673 tig0023889:+32938 None:intergenic
AAGTTAGAATCCGGAGGAGG+TGG 0.540145 tig0023889:-33655 Msa1412360:CDS
TGAAGTGTAACAACAGCTCC+AGG 0.541310 tig0023889:+33379 None:intergenic
TGATCAATACGGAGAACGAC+CGG 0.541431 tig0023889:+32949 None:intergenic
CAACAACTTCAAGGTGGTGG+TGG 0.543583 tig0023889:-33130 Msa1412360:CDS
CTGTCACGTGTGATAATAAT+CGG 0.545674 tig0023889:+33556 None:intergenic
AGGTGGTTCCGGTGGCGACA+CGG 0.546707 tig0023889:-33638 Msa1412360:CDS
TTTGCTAGACGCCGTCAAAG+AGG 0.554223 tig0023889:-33463 Msa1412360:CDS
TTAGGATTAGAATTAGGAGG+AGG 0.554265 tig0023889:+33022 None:intergenic
TCTCTTGCTGTGTGGAAAGG+TGG 0.554885 tig0023889:+33859 None:intergenic
GGACAAGGGCAGGTTGTTGG+TGG 0.555291 tig0023889:-33265 Msa1412360:CDS
GAAGCAGCGGGCGGAGCAGG+TGG 0.558808 tig0023889:+33313 None:intergenic
ATTCAACAACTTCAAGGTGG+TGG 0.559910 tig0023889:-33133 Msa1412360:CDS
TCCGGAGGAGGTGGTTCCGG+TGG 0.560060 tig0023889:-33646 Msa1412360:CDS
ACAACAGCTCCAGGAGAAGC+CGG 0.562958 tig0023889:+33388 None:intergenic
GGTGGTGGTGGTTCTCCAAG+TGG 0.570648 tig0023889:-33112 Msa1412360:CDS
GTTGTTGCTGCTGTAAAGTG+TGG 0.572769 tig0023889:+33785 None:intergenic
CGGTTACAAACGTGACACTA+AGG 0.574287 tig0023889:-33414 Msa1412360:CDS
CTGTTGTTACACTTCATGGA+AGG 0.580978 tig0023889:-33372 Msa1412360:CDS
CCCAAGTTAGAATCCGGAGG+AGG 0.587598 tig0023889:-33658 Msa1412360:CDS
ATGGTCAAACCAGAAGCAGC+GGG 0.592455 tig0023889:+33301 None:intergenic
GAGGCGTTTGCATCATGAGT+GGG 0.596897 tig0023889:-33444 Msa1412360:CDS
CATCATGAGTGGGACAGGAA+CGG 0.597354 tig0023889:-33434 Msa1412360:CDS
CTTGCTGTGTGGAAAGGTGG+AGG 0.605189 tig0023889:+33862 None:intergenic
TATATTTAGCGGGCGGACAA+GGG 0.608521 tig0023889:-33279 Msa1412360:CDS
GGTGGTGGTTCTCCAAGTGG+TGG 0.613666 tig0023889:-33109 Msa1412360:CDS
AGATCTCTTGCTGTGTGGAA+AGG 0.616128 tig0023889:+33856 None:intergenic
GAACCATCATCATCTTCCAA+AGG 0.621966 tig0023889:+33160 None:intergenic
CTCCTCCGGATTCTAACTTG+GGG 0.622134 tig0023889:+33659 None:intergenic
CAAAGCGGAAGTAGCAGCGG+CGG 0.624512 tig0023889:-33742 Msa1412360:CDS
AGAGGCGTTTGCATCATGAG+TGG 0.639567 tig0023889:-33445 Msa1412360:CDS
CAATACGGAGAACGACCGGT+TGG 0.641650 tig0023889:+32953 None:intergenic
GTCAAACCAGAAGCAGCGGG+CGG 0.648457 tig0023889:+33304 None:intergenic
AGCCCCAAGTTAGAATCCGG+AGG 0.649404 tig0023889:-33661 Msa1412360:CDS
TCAATGACAAGAAGACCAAG+AGG 0.650544 tig0023889:-33613 Msa1412360:CDS
TATGGTCAAACCAGAAGCAG+CGG 0.651114 tig0023889:+33300 None:intergenic
ATGGATCAAATAACATCACA+TGG 0.651930 tig0023889:-33895 Msa1412360:CDS
GAACAAAGCGGAAGTAGCAG+CGG 0.653465 tig0023889:-33745 Msa1412360:CDS
GTTGGCCAGAAATTATCAGA+AGG 0.660128 tig0023889:+32971 None:intergenic
GATGAAGATCTCTTGCTGTG+TGG 0.664521 tig0023889:+33851 None:intergenic
TTGACCATATATTTAGCGGG+CGG 0.665260 tig0023889:-33286 Msa1412360:CDS
TCTATTCAACAACTTCAAGG+TGG 0.668992 tig0023889:-33136 Msa1412360:CDS
CTTGAAAACTCATGTGATGG+AGG 0.692082 tig0023889:-33524 Msa1412360:CDS
ACAGATCAAGATGAACAAAG+CGG 0.697061 tig0023889:-33757 Msa1412360:CDS
TCACGTGTGATAATAATCGG+TGG 0.702591 tig0023889:+33559 None:intergenic
CATGTGATGGAGGTTGCAGA+CGG 0.715960 tig0023889:-33514 Msa1412360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGATTAGGATTAGAATT+AGG + tig0023889:33834-33853 None:intergenic 20.0%
!! TTAAGATTAGGATTAGAATT+AGG + tig0023889:33834-33853 None:intergenic 20.0%
! AGAAGATTAGGATTAAGATT+AGG + tig0023889:33846-33865 None:intergenic 25.0%
! AATCTTAATCCTAATCTTCT+CGG - tig0023889:33846-33865 Msa1412360:CDS 25.0%
! AGAAGATTAGGATTAAGATT+AGG + tig0023889:33846-33865 None:intergenic 25.0%
! AATCTTAATCCTAATCTTCT+CGG - tig0023889:33846-33865 Msa1412360:CDS 25.0%
ATGGATCAAATAACATCACA+TGG - tig0023889:32952-32971 Msa1412360:CDS 30.0%
TGGTTTGACCATATATTTAG+CGG - tig0023889:33557-33576 Msa1412360:CDS 30.0%
TCTTCTATTCAACAACTTCA+AGG - tig0023889:33708-33727 Msa1412360:CDS 30.0%
AGATTAGGATTAGAATTAGG+AGG + tig0023889:33831-33850 None:intergenic 30.0%
ATGGATCAAATAACATCACA+TGG - tig0023889:32952-32971 Msa1412360:CDS 30.0%
TGGTTTGACCATATATTTAG+CGG - tig0023889:33557-33576 Msa1412360:CDS 30.0%
TCTTCTATTCAACAACTTCA+AGG - tig0023889:33708-33727 Msa1412360:CDS 30.0%
AGATTAGGATTAGAATTAGG+AGG + tig0023889:33831-33850 None:intergenic 30.0%
ACAGATCAAGATGAACAAAG+CGG - tig0023889:33090-33109 Msa1412360:CDS 35.0%
!!! TGTTGTTGCTGTTTTCTTCT+CGG + tig0023889:33149-33168 None:intergenic 35.0%
! GTGATAATAATCGGTGGTTT+TGG + tig0023889:33285-33304 None:intergenic 35.0%
CTGTCACGTGTGATAATAAT+CGG + tig0023889:33294-33313 None:intergenic 35.0%
GGTTTGACCATATATTTAGC+GGG - tig0023889:33558-33577 Msa1412360:CDS 35.0%
GAAGCAGACATAATAACAAC+AGG + tig0023889:33639-33658 None:intergenic 35.0%
TCTATTCAACAACTTCAAGG+TGG - tig0023889:33711-33730 Msa1412360:CDS 35.0%
TTAGGATTAGAATTAGGAGG+AGG + tig0023889:33828-33847 None:intergenic 35.0%
AGATGCCTTCTGATAATTTC+TGG - tig0023889:33871-33890 Msa1412360:CDS 35.0%
ACAGATCAAGATGAACAAAG+CGG - tig0023889:33090-33109 Msa1412360:CDS 35.0%
!!! TGTTGTTGCTGTTTTCTTCT+CGG + tig0023889:33149-33168 None:intergenic 35.0%
! GTGATAATAATCGGTGGTTT+TGG + tig0023889:33285-33304 None:intergenic 35.0%
CTGTCACGTGTGATAATAAT+CGG + tig0023889:33294-33313 None:intergenic 35.0%
GGTTTGACCATATATTTAGC+GGG - tig0023889:33558-33577 Msa1412360:CDS 35.0%
GAAGCAGACATAATAACAAC+AGG + tig0023889:33639-33658 None:intergenic 35.0%
TCTATTCAACAACTTCAAGG+TGG - tig0023889:33711-33730 Msa1412360:CDS 35.0%
TTAGGATTAGAATTAGGAGG+AGG + tig0023889:33828-33847 None:intergenic 35.0%
AGATGCCTTCTGATAATTTC+TGG - tig0023889:33871-33890 Msa1412360:CDS 35.0%
GCTGTAAAGTGTGGAATTGA+TGG + tig0023889:33056-33075 None:intergenic 40.0%
!! TGTTTTCTTCTCGGTTTGTG+AGG + tig0023889:33140-33159 None:intergenic 40.0%
TTTAGCCCCAAGTTAGAATC+CGG - tig0023889:33183-33202 Msa1412360:CDS 40.0%
TCAATGACAAGAAGACCAAG+AGG - tig0023889:33234-33253 Msa1412360:CDS 40.0%
!!! CGGTGGTTTTGGTTTGTTTT+TGG + tig0023889:33274-33293 None:intergenic 40.0%
TCACGTGTGATAATAATCGG+TGG + tig0023889:33291-33310 None:intergenic 40.0%
! CTCCATCACATGAGTTTTCA+AGG + tig0023889:33325-33344 None:intergenic 40.0%
CTTGAAAACTCATGTGATGG+AGG - tig0023889:33323-33342 Msa1412360:CDS 40.0%
CTGTTGTTACACTTCATGGA+AGG - tig0023889:33475-33494 Msa1412360:CDS 40.0%
TTGACCATATATTTAGCGGG+CGG - tig0023889:33561-33580 Msa1412360:CDS 40.0%
TGCTTATGAGAGACTTCCTT+TGG - tig0023889:33671-33690 Msa1412360:CDS 40.0%
! CTTCCTTTGGAAGATGATGA+TGG - tig0023889:33684-33703 Msa1412360:CDS 40.0%
GAACCATCATCATCTTCCAA+AGG + tig0023889:33690-33709 None:intergenic 40.0%
ATTCAACAACTTCAAGGTGG+TGG - tig0023889:33714-33733 Msa1412360:CDS 40.0%
! CAGCAACAACAACAGCTTTT+AGG - tig0023889:33771-33790 Msa1412360:CDS 40.0%
GTTGGCCAGAAATTATCAGA+AGG + tig0023889:33879-33898 None:intergenic 40.0%
!! TCTGATAATTTCTGGCCAAC+CGG - tig0023889:33879-33898 Msa1412360:CDS 40.0%
GCTGTAAAGTGTGGAATTGA+TGG + tig0023889:33056-33075 None:intergenic 40.0%
!! TGTTTTCTTCTCGGTTTGTG+AGG + tig0023889:33140-33159 None:intergenic 40.0%
TTTAGCCCCAAGTTAGAATC+CGG - tig0023889:33183-33202 Msa1412360:CDS 40.0%
TCAATGACAAGAAGACCAAG+AGG - tig0023889:33234-33253 Msa1412360:CDS 40.0%
!!! CGGTGGTTTTGGTTTGTTTT+TGG + tig0023889:33274-33293 None:intergenic 40.0%
TCACGTGTGATAATAATCGG+TGG + tig0023889:33291-33310 None:intergenic 40.0%
! CTCCATCACATGAGTTTTCA+AGG + tig0023889:33325-33344 None:intergenic 40.0%
CTTGAAAACTCATGTGATGG+AGG - tig0023889:33323-33342 Msa1412360:CDS 40.0%
CTGTTGTTACACTTCATGGA+AGG - tig0023889:33475-33494 Msa1412360:CDS 40.0%
TTGACCATATATTTAGCGGG+CGG - tig0023889:33561-33580 Msa1412360:CDS 40.0%
TGCTTATGAGAGACTTCCTT+TGG - tig0023889:33671-33690 Msa1412360:CDS 40.0%
! CTTCCTTTGGAAGATGATGA+TGG - tig0023889:33684-33703 Msa1412360:CDS 40.0%
GAACCATCATCATCTTCCAA+AGG + tig0023889:33690-33709 None:intergenic 40.0%
ATTCAACAACTTCAAGGTGG+TGG - tig0023889:33714-33733 Msa1412360:CDS 40.0%
! CAGCAACAACAACAGCTTTT+AGG - tig0023889:33771-33790 Msa1412360:CDS 40.0%
GTTGGCCAGAAATTATCAGA+AGG + tig0023889:33879-33898 None:intergenic 40.0%
!! TCTGATAATTTCTGGCCAAC+CGG - tig0023889:33879-33898 Msa1412360:CDS 40.0%
! AGATCTCTTGCTGTGTGGAA+AGG + tig0023889:32994-33013 None:intergenic 45.0%
! GATGAAGATCTCTTGCTGTG+TGG + tig0023889:32999-33018 None:intergenic 45.0%
GTTGTTGCTGCTGTAAAGTG+TGG + tig0023889:33065-33084 None:intergenic 45.0%
!!! GGTTTGTTTTTGGATCCAGC+TGG + tig0023889:33264-33283 None:intergenic 45.0%
CGCCTTGAAAACTCATGTGA+TGG - tig0023889:33320-33339 Msa1412360:CDS 45.0%
TGATGCAAACGCCTCTTTGA+CGG + tig0023889:33398-33417 None:intergenic 45.0%
CGGTTACAAACGTGACACTA+AGG - tig0023889:33433-33452 Msa1412360:CDS 45.0%
AAACGTGACACTAAGGCAAC+CGG - tig0023889:33440-33459 Msa1412360:CDS 45.0%
TGAAGTGTAACAACAGCTCC+AGG + tig0023889:33471-33490 None:intergenic 45.0%
GGAGCTGTTGTTACACTTCA+TGG - tig0023889:33471-33490 Msa1412360:CDS 45.0%
AAGGTTCGAGATTCTTTCGC+TGG - tig0023889:33494-33513 Msa1412360:CDS 45.0%
TATGGTCAAACCAGAAGCAG+CGG + tig0023889:33550-33569 None:intergenic 45.0%
TTGTCCGCCCGCTAAATATA+TGG + tig0023889:33568-33587 None:intergenic 45.0%
! ATATATTTAGCGGGCGGACA+AGG - tig0023889:33567-33586 Msa1412360:CDS 45.0%
! TATATTTAGCGGGCGGACAA+GGG - tig0023889:33568-33587 Msa1412360:CDS 45.0%
!! GTTGTTGGTGGAAGTGTTGT+TGG - tig0023889:33594-33613 Msa1412360:CDS 45.0%
! GTTGGTGCTTTGATTGCTTC+TGG - tig0023889:33612-33631 Msa1412360:CDS 45.0%
! GGAGGCATAGCTTGAAAAAG+TGG + tig0023889:33810-33829 None:intergenic 45.0%
! AGATCTCTTGCTGTGTGGAA+AGG + tig0023889:32994-33013 None:intergenic 45.0%
! GATGAAGATCTCTTGCTGTG+TGG + tig0023889:32999-33018 None:intergenic 45.0%
GTTGTTGCTGCTGTAAAGTG+TGG + tig0023889:33065-33084 None:intergenic 45.0%
!!! GGTTTGTTTTTGGATCCAGC+TGG + tig0023889:33264-33283 None:intergenic 45.0%
CGCCTTGAAAACTCATGTGA+TGG - tig0023889:33320-33339 Msa1412360:CDS 45.0%
TGATGCAAACGCCTCTTTGA+CGG + tig0023889:33398-33417 None:intergenic 45.0%
CGGTTACAAACGTGACACTA+AGG - tig0023889:33433-33452 Msa1412360:CDS 45.0%
AAACGTGACACTAAGGCAAC+CGG - tig0023889:33440-33459 Msa1412360:CDS 45.0%
TGAAGTGTAACAACAGCTCC+AGG + tig0023889:33471-33490 None:intergenic 45.0%
GGAGCTGTTGTTACACTTCA+TGG - tig0023889:33471-33490 Msa1412360:CDS 45.0%
AAGGTTCGAGATTCTTTCGC+TGG - tig0023889:33494-33513 Msa1412360:CDS 45.0%
TATGGTCAAACCAGAAGCAG+CGG + tig0023889:33550-33569 None:intergenic 45.0%
TTGTCCGCCCGCTAAATATA+TGG + tig0023889:33568-33587 None:intergenic 45.0%
! ATATATTTAGCGGGCGGACA+AGG - tig0023889:33567-33586 Msa1412360:CDS 45.0%
! TATATTTAGCGGGCGGACAA+GGG - tig0023889:33568-33587 Msa1412360:CDS 45.0%
!! GTTGTTGGTGGAAGTGTTGT+TGG - tig0023889:33594-33613 Msa1412360:CDS 45.0%
! GTTGGTGCTTTGATTGCTTC+TGG - tig0023889:33612-33631 Msa1412360:CDS 45.0%
! GGAGGCATAGCTTGAAAAAG+TGG + tig0023889:33810-33829 None:intergenic 45.0%
! TCTCTTGCTGTGTGGAAAGG+TGG + tig0023889:32991-33010 None:intergenic 50.0%
!! GTTGCTGCTGTTGGTGTTGA+TGG + tig0023889:33026-33045 None:intergenic 50.0%
GAACAAAGCGGAAGTAGCAG+CGG - tig0023889:33102-33121 Msa1412360:CDS 50.0%
CTCCTCCGGATTCTAACTTG+GGG + tig0023889:33191-33210 None:intergenic 50.0%
CCTCCTCCGGATTCTAACTT+GGG + tig0023889:33192-33211 None:intergenic 50.0%
ACCTCCTCCGGATTCTAACT+TGG + tig0023889:33193-33212 None:intergenic 50.0%
AAGTTAGAATCCGGAGGAGG+TGG - tig0023889:33192-33211 Msa1412360:CDS 50.0%
! CATGTGATGGAGGTTGCAGA+CGG - tig0023889:33333-33352 Msa1412360:CDS 50.0%
TTTGCTAGACGCCGTCAAAG+AGG - tig0023889:33384-33403 Msa1412360:CDS 50.0%
!! AGAGGCGTTTGCATCATGAG+TGG - tig0023889:33402-33421 Msa1412360:CDS 50.0%
! GAGGCGTTTGCATCATGAGT+GGG - tig0023889:33403-33422 Msa1412360:CDS 50.0%
GTTTGCATCATGAGTGGGAC+AGG - tig0023889:33408-33427 Msa1412360:CDS 50.0%
CATCATGAGTGGGACAGGAA+CGG - tig0023889:33413-33432 Msa1412360:CDS 50.0%
TTCGAGATTCTTTCGCTGGC+TGG - tig0023889:33498-33517 Msa1412360:CDS 50.0%
ATGGTCAAACCAGAAGCAGC+GGG + tig0023889:33549-33568 None:intergenic 50.0%
! CAACAACTTCAAGGTGGTGG+TGG - tig0023889:33717-33736 Msa1412360:CDS 50.0%
GGCATCTGACCGAGAAGATT+AGG + tig0023889:33858-33877 None:intergenic 50.0%
! TCTCTTGCTGTGTGGAAAGG+TGG + tig0023889:32991-33010 None:intergenic 50.0%
!! GTTGCTGCTGTTGGTGTTGA+TGG + tig0023889:33026-33045 None:intergenic 50.0%
GAACAAAGCGGAAGTAGCAG+CGG - tig0023889:33102-33121 Msa1412360:CDS 50.0%
CTCCTCCGGATTCTAACTTG+GGG + tig0023889:33191-33210 None:intergenic 50.0%
CCTCCTCCGGATTCTAACTT+GGG + tig0023889:33192-33211 None:intergenic 50.0%
ACCTCCTCCGGATTCTAACT+TGG + tig0023889:33193-33212 None:intergenic 50.0%
AAGTTAGAATCCGGAGGAGG+TGG - tig0023889:33192-33211 Msa1412360:CDS 50.0%
! CATGTGATGGAGGTTGCAGA+CGG - tig0023889:33333-33352 Msa1412360:CDS 50.0%
TTTGCTAGACGCCGTCAAAG+AGG - tig0023889:33384-33403 Msa1412360:CDS 50.0%
!! AGAGGCGTTTGCATCATGAG+TGG - tig0023889:33402-33421 Msa1412360:CDS 50.0%
! GAGGCGTTTGCATCATGAGT+GGG - tig0023889:33403-33422 Msa1412360:CDS 50.0%
GTTTGCATCATGAGTGGGAC+AGG - tig0023889:33408-33427 Msa1412360:CDS 50.0%
CATCATGAGTGGGACAGGAA+CGG - tig0023889:33413-33432 Msa1412360:CDS 50.0%
TTCGAGATTCTTTCGCTGGC+TGG - tig0023889:33498-33517 Msa1412360:CDS 50.0%
ATGGTCAAACCAGAAGCAGC+GGG + tig0023889:33549-33568 None:intergenic 50.0%
! CAACAACTTCAAGGTGGTGG+TGG - tig0023889:33717-33736 Msa1412360:CDS 50.0%
GGCATCTGACCGAGAAGATT+AGG + tig0023889:33858-33877 None:intergenic 50.0%
! CTTGCTGTGTGGAAAGGTGG+AGG + tig0023889:32988-33007 None:intergenic 55.0%
!! GGTGCTGTTGTTGCTGCTGT+TGG + tig0023889:33035-33054 None:intergenic 55.0%
AGCCCCAAGTTAGAATCCGG+AGG - tig0023889:33186-33205 Msa1412360:CDS 55.0%
CCCAAGTTAGAATCCGGAGG+AGG - tig0023889:33189-33208 Msa1412360:CDS 55.0%
CATTGAATCCGTGTCGCCAC+CGG + tig0023889:33220-33239 None:intergenic 55.0%
AGACCAAGAGGAAGACCAGC+TGG - tig0023889:33246-33265 Msa1412360:CDS 55.0%
!! GATCCAGCTGGTCTTCCTCT+TGG + tig0023889:33252-33271 None:intergenic 55.0%
ACAACAGCTCCAGGAGAAGC+CGG + tig0023889:33462-33481 None:intergenic 55.0%
!! CAACTTCAAGGTGGTGGTGG+TGG - tig0023889:33720-33739 Msa1412360:CDS 55.0%
TGAACACCACCACCACCACT+TGG + tig0023889:33753-33772 None:intergenic 55.0%
CAATACGGAGAACGACCGGT+TGG + tig0023889:33897-33916 None:intergenic 55.0%
! CTTGCTGTGTGGAAAGGTGG+AGG + tig0023889:32988-33007 None:intergenic 55.0%
!! GGTGCTGTTGTTGCTGCTGT+TGG + tig0023889:33035-33054 None:intergenic 55.0%
AGCCCCAAGTTAGAATCCGG+AGG - tig0023889:33186-33205 Msa1412360:CDS 55.0%
CCCAAGTTAGAATCCGGAGG+AGG - tig0023889:33189-33208 Msa1412360:CDS 55.0%
CATTGAATCCGTGTCGCCAC+CGG + tig0023889:33220-33239 None:intergenic 55.0%
AGACCAAGAGGAAGACCAGC+TGG - tig0023889:33246-33265 Msa1412360:CDS 55.0%
!! GATCCAGCTGGTCTTCCTCT+TGG + tig0023889:33252-33271 None:intergenic 55.0%
ACAACAGCTCCAGGAGAAGC+CGG + tig0023889:33462-33481 None:intergenic 55.0%
!! CAACTTCAAGGTGGTGGTGG+TGG - tig0023889:33720-33739 Msa1412360:CDS 55.0%
TGAACACCACCACCACCACT+TGG + tig0023889:33753-33772 None:intergenic 55.0%
CAATACGGAGAACGACCGGT+TGG + tig0023889:33897-33916 None:intergenic 55.0%
CAAAGCGGAAGTAGCAGCGG+CGG - tig0023889:33105-33124 Msa1412360:CDS 60.0%
GAATCCGGAGGAGGTGGTTC+CGG - tig0023889:33198-33217 Msa1412360:CDS 60.0%
! CTAAGGCAACCGGCTTCTCC+TGG - tig0023889:33450-33469 Msa1412360:CDS 60.0%
GTCAAACCAGAAGCAGCGGG+CGG + tig0023889:33546-33565 None:intergenic 60.0%
GGACAAGGGCAGGTTGTTGG+TGG - tig0023889:33582-33601 Msa1412360:CDS 60.0%
!! CTTCAAGGTGGTGGTGGTGG+TGG - tig0023889:33723-33742 Msa1412360:CDS 60.0%
!! GGTGGTGGTGGTTCTCCAAG+TGG - tig0023889:33735-33754 Msa1412360:CDS 60.0%
! GGTGGTGGTTCTCCAAGTGG+TGG - tig0023889:33738-33757 Msa1412360:CDS 60.0%
GGTGGTTCTCCAAGTGGTGG+TGG - tig0023889:33741-33760 Msa1412360:CDS 60.0%
!! GGTTCTCCAAGTGGTGGTGG+TGG - tig0023889:33744-33763 Msa1412360:CDS 60.0%
CAAAGCGGAAGTAGCAGCGG+CGG - tig0023889:33105-33124 Msa1412360:CDS 60.0%
GAATCCGGAGGAGGTGGTTC+CGG - tig0023889:33198-33217 Msa1412360:CDS 60.0%
! CTAAGGCAACCGGCTTCTCC+TGG - tig0023889:33450-33469 Msa1412360:CDS 60.0%
GTCAAACCAGAAGCAGCGGG+CGG + tig0023889:33546-33565 None:intergenic 60.0%
GGACAAGGGCAGGTTGTTGG+TGG - tig0023889:33582-33601 Msa1412360:CDS 60.0%
!! CTTCAAGGTGGTGGTGGTGG+TGG - tig0023889:33723-33742 Msa1412360:CDS 60.0%
!! GGTGGTGGTGGTTCTCCAAG+TGG - tig0023889:33735-33754 Msa1412360:CDS 60.0%
! GGTGGTGGTTCTCCAAGTGG+TGG - tig0023889:33738-33757 Msa1412360:CDS 60.0%
GGTGGTTCTCCAAGTGGTGG+TGG - tig0023889:33741-33760 Msa1412360:CDS 60.0%
!! GGTTCTCCAAGTGGTGGTGG+TGG - tig0023889:33744-33763 Msa1412360:CDS 60.0%
AGGTGGTTCCGGTGGCGACA+CGG - tig0023889:33209-33228 Msa1412360:CDS 65.0%
! TTTAGCGGGCGGACAAGGGC+AGG - tig0023889:33572-33591 Msa1412360:CDS 65.0%
GGCGGACAAGGGCAGGTTGT+TGG - tig0023889:33579-33598 Msa1412360:CDS 65.0%
AGGTGGTTCCGGTGGCGACA+CGG - tig0023889:33209-33228 Msa1412360:CDS 65.0%
! TTTAGCGGGCGGACAAGGGC+AGG - tig0023889:33572-33591 Msa1412360:CDS 65.0%
GGCGGACAAGGGCAGGTTGT+TGG - tig0023889:33579-33598 Msa1412360:CDS 65.0%
AGCGGAAGTAGCAGCGGCGG+TGG - tig0023889:33108-33127 Msa1412360:CDS 70.0%
TCCGGAGGAGGTGGTTCCGG+TGG - tig0023889:33201-33220 Msa1412360:CDS 70.0%
GCCACCGGAACCACCTCCTC+CGG + tig0023889:33205-33224 None:intergenic 70.0%
AGCGGAAGTAGCAGCGGCGG+TGG - tig0023889:33108-33127 Msa1412360:CDS 70.0%
TCCGGAGGAGGTGGTTCCGG+TGG - tig0023889:33201-33220 Msa1412360:CDS 70.0%
GCCACCGGAACCACCTCCTC+CGG + tig0023889:33205-33224 None:intergenic 70.0%
GAAGCAGCGGGCGGAGCAGG+TGG + tig0023889:33537-33556 None:intergenic 75.0%
CCAGAAGCAGCGGGCGGAGC+AGG + tig0023889:33540-33559 None:intergenic 75.0%
CCTGCTCCGCCCGCTGCTTC+TGG - tig0023889:33537-33556 Msa1412360:CDS 75.0%
GAAGCAGCGGGCGGAGCAGG+TGG + tig0023889:33537-33556 None:intergenic 75.0%
CCAGAAGCAGCGGGCGGAGC+AGG + tig0023889:33540-33559 None:intergenic 75.0%
CCTGCTCCGCCCGCTGCTTC+TGG - tig0023889:33537-33556 Msa1412360:CDS 75.0%
! GCAGCGGGCGGAGCAGGTGG+TGG + tig0023889:33534-33553 None:intergenic 80.0%
! GCAGCGGGCGGAGCAGGTGG+TGG + tig0023889:33534-33553 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0023889 gene 32952 33917 32952 ID=Msa1412360;Name=Msa1412360
tig0023889 mRNA 32952 33917 32952 ID=Msa1412360-mRNA-1;Parent=Msa1412360;Name=Msa1412360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|321
tig0023889 exon 32952 33917 32952 ID=Msa1412360-mRNA-1:exon:20561;Parent=Msa1412360-mRNA-1
tig0023889 CDS 32952 33917 32952 ID=Msa1412360-mRNA-1:cds;Parent=Msa1412360-mRNA-1
Gene Sequence

>Msa1412360

ATGGATCAAATAACATCACATGGACATTCACTTCCTCCACCTTTCCACACAGCAAGAGATCTTCATCTTCACCATCAACACCAACAGCAGCAACAACAGCACCATCAATTCCACACTTTACAGCAGCAACAACAAACAACAGATCAAGATGAACAAAGCGGAAGTAGCAGCGGCGGTGGACTCAACCTCACAAACCGAGAAGAAAACAGCAACAACAAGTTCAGCACAGAATTTAGCCCCAAGTTAGAATCCGGAGGAGGTGGTTCCGGTGGCGACACGGATTCAATGACAAGAAGACCAAGAGGAAGACCAGCTGGATCCAAAAACAAACCAAAACCACCGATTATTATCACACGTGACAGCGCAAACGCCTTGAAAACTCATGTGATGGAGGTTGCAGACGGTTGCGACGTTGTTGAAAGTGTCAATAACTTTGCTAGACGCCGTCAAAGAGGCGTTTGCATCATGAGTGGGACAGGAACGGTTACAAACGTGACACTAAGGCAACCGGCTTCTCCTGGAGCTGTTGTTACACTTCATGGAAGGTTCGAGATTCTTTCGCTGGCTGGATCGTTTCTTCCACCACCTGCTCCGCCCGCTGCTTCTGGTTTGACCATATATTTAGCGGGCGGACAAGGGCAGGTTGTTGGTGGAAGTGTTGTTGGTGCTTTGATTGCTTCTGGACCTGTTGTTATTATGTCTGCTTCTTTTAGCAACGCTGCTTATGAGAGACTTCCTTTGGAAGATGATGATGGTTCTTCTATTCAACAACTTCAAGGTGGTGGTGGTGGTGGTTCTCCAAGTGGTGGTGGTGGTGTTCAGCAACAACAACAGCTTTTAGGAGATTCAACTGCTCCACTTTTTCAAGCTATGCCTCCTCCTAATTCTAATCCTAATCTTAATCCTAATCTTCTCGGTCAGATGCCTTCTGATAATTTCTGGCCAACCGGTCGTTCTCCGTATTGA

Protein sequence

>Msa1412360

MDQITSHGHSLPPPFHTARDLHLHHQHQQQQQQHHQFHTLQQQQQTTDQDEQSGSSSGGGLNLTNREENSNNKFSTEFSPKLESGGGGSGGDTDSMTRRPRGRPAGSKNKPKPPIIITRDSANALKTHVMEVADGCDVVESVNNFARRRQRGVCIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGALIASGPVVIMSASFSNAAYERLPLEDDDGSSIQQLQGGGGGGSPSGGGGVQQQQQLLGDSTAPLFQAMPPPNSNPNLNPNLLGQMPSDNFWPTGRSPY*