AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1367600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367600 MtrunA17_Chr3g0145781 90.625 544 21 6 1 523 3 537 0.0 987
Msa1367600 MtrunA17_Chr6g0466611 32.850 414 237 14 118 517 142 528 1.78e-52 189
Msa1367600 MtrunA17_Chr3g0107851 30.079 379 240 10 116 490 115 472 1.60e-41 157
Msa1367600 MtrunA17_Chr4g0062301 28.382 377 225 10 141 506 120 462 3.76e-41 156
Msa1367600 MtrunA17_Chr2g0330401 27.806 392 252 12 116 505 94 456 6.24e-40 151
Msa1367600 MtrunA17_Chr2g0307471 29.032 403 232 15 111 498 84 447 1.76e-39 150
Msa1367600 MtrunA17_Chr4g0063551 30.548 383 224 12 139 505 161 517 1.07e-38 150
Msa1367600 MtrunA17_Chr3g0098121 27.955 440 271 12 72 507 117 514 2.93e-36 143
Msa1367600 MtrunA17_Chr7g0270131 26.972 393 255 11 116 505 230 593 3.45e-36 143
Msa1367600 MtrunA17_Chr2g0300291 29.567 416 251 12 100 507 123 504 1.77e-35 141
Msa1367600 MtrunA17_Chr1g0193491 28.158 380 240 11 122 497 118 468 3.52e-34 136
Msa1367600 MtrunA17_Chr7g0271121 28.610 374 233 11 128 497 116 459 3.75e-34 137
Msa1367600 MtrunA17_Chr1g0157691 26.753 385 245 11 116 491 145 501 3.99e-34 136
Msa1367600 MtrunA17_Chr6g0449911 26.649 379 246 10 116 492 163 511 5.16e-34 136
Msa1367600 MtrunA17_Chr1g0200181 26.494 385 246 11 116 491 143 499 7.57e-34 135
Msa1367600 MtrunA17_Chr5g0409981 28.358 402 253 14 110 505 96 468 2.04e-33 133
Msa1367600 MtrunA17_Chr2g0293631 28.117 377 239 12 118 492 496 842 3.11e-33 135
Msa1367600 MtrunA17_Chr1g0176041 28.431 408 245 14 116 506 152 529 4.79e-33 133
Msa1367600 MtrunA17_Chr6g0483491 26.933 375 232 9 116 484 8 346 1.04e-31 127
Msa1367600 MtrunA17_Chr6g0461751 24.868 378 255 9 118 493 140 490 4.03e-31 126
Msa1367600 MtrunA17_Chr7g0236841 26.098 410 258 11 116 519 8 378 7.20e-31 124
Msa1367600 MtrunA17_Chr7g0247191 27.294 425 266 13 60 481 95 479 1.37e-30 125
Msa1367600 MtrunA17_Chr7g0263771 26.076 395 251 13 116 504 127 486 2.57e-30 125
Msa1367600 MtrunA17_Chr7g0247181 27.294 425 266 13 60 481 85 469 3.28e-30 124
Msa1367600 MtrunA17_Chr7g0247221 28.042 378 232 11 107 481 132 472 4.56e-30 123
Msa1367600 MtrunA17_Chr4g0040761 29.201 363 222 11 140 499 41 371 4.61e-30 125
Msa1367600 MtrunA17_Chr2g0277821 26.289 388 241 12 116 493 502 854 7.24e-30 124
Msa1367600 MtrunA17_Chr2g0310581 27.960 397 238 14 118 504 53 411 1.06e-29 122
Msa1367600 MtrunA17_Chr4g0034411 29.067 375 219 17 141 504 99 437 1.38e-29 123
Msa1367600 MtrunA17_Chr3g0121351 25.862 406 259 14 116 506 143 521 1.47e-29 122
Msa1367600 MtrunA17_Chr6g0475251 29.915 351 205 12 143 483 128 447 9.37e-29 120
Msa1367600 MtrunA17_Chr5g0443991 27.614 373 228 15 141 504 99 438 2.98e-28 119
Msa1367600 MtrunA17_Chr3g0114081 28.947 380 223 16 143 502 41 393 3.02e-28 118
Msa1367600 MtrunA17_Chr7g0236831 26.364 440 229 15 128 499 173 585 3.39e-28 119
Msa1367600 MtrunA17_Chr3g0095031 26.250 400 240 13 122 508 94 451 5.30e-28 117
Msa1367600 MtrunA17_Chr2g0297261 25.776 419 272 10 92 504 2 387 6.91e-28 115
Msa1367600 MtrunA17_Chr5g0442191 26.463 393 248 13 122 508 85 442 1.45e-27 116
Msa1367600 MtrunA17_Chr1g0192021 25.791 411 232 13 117 482 25 407 1.48e-27 116
Msa1367600 MtrunA17_Chr4g0058591 26.912 353 222 11 116 463 200 521 3.71e-26 112
Msa1367600 MtrunA17_Chr4g0070981 27.083 384 231 11 118 493 41 383 2.39e-25 108
Msa1367600 MtrunA17_Chr4g0003441 27.889 398 231 12 119 502 109 464 2.93e-25 108
Msa1367600 MtrunA17_Chr4g0029191 27.253 455 251 19 101 491 27 465 3.42e-25 109
Msa1367600 MtrunA17_Chr2g0299681 27.461 386 227 12 118 493 41 383 4.24e-25 107
Msa1367600 MtrunA17_Chr8g0347161 24.101 473 304 15 33 487 24 459 8.26e-25 108
Msa1367600 MtrunA17_Chr2g0329931 27.013 385 232 12 117 493 40 383 9.35e-25 106
Msa1367600 MtrunA17_Chr1g0204391 27.473 364 213 10 143 483 69 404 3.22e-24 106
Msa1367600 MtrunA17_Chr8g0342861 26.343 391 239 12 118 500 41 390 5.50e-24 104
Msa1367600 MtrunA17_Chr4g0076491 25.127 394 252 15 116 491 285 653 1.81e-23 104
Msa1367600 MtrunA17_Chr1g0149251 28.070 342 194 10 162 491 8 309 1.11e-22 99.4
Msa1367600 MtrunA17_Chr6g0449741 24.611 386 247 13 116 484 247 605 1.41e-21 98.6
Msa1367600 MtrunA17_Chr8g0347151 25.063 399 259 14 103 487 186 558 3.57e-21 97.4
Msa1367600 MtrunA17_Chr8g0386451 25.527 427 269 16 112 520 282 677 3.66e-21 97.4
Msa1367600 MtrunA17_Chr2g0309551 24.582 419 270 11 103 484 93 502 1.71e-19 91.7
Msa1367600 MtrunA17_Chr6g0465771 30.994 171 108 3 119 288 93 254 2.62e-18 86.3
Msa1367600 MtrunA17_Chr4g0074521 23.573 403 244 12 109 481 73 441 5.07e-17 83.6
Msa1367600 MtrunA17_Chr0c09g0493491 29.609 179 116 3 119 296 93 262 8.67e-17 81.3
Msa1367600 MtrunA17_Chr8g0364251 32.432 185 109 6 304 484 358 530 1.10e-16 83.2
Msa1367600 MtrunA17_Chr8g0364251 30.412 194 110 8 108 283 75 261 2.74e-13 72.4
Msa1367600 MtrunA17_Chr4g0039471 30.542 203 124 6 118 316 223 412 1.24e-16 82.0
Msa1367600 MtrunA17_Chr1g0179761 24.291 494 284 21 33 497 21 453 3.83e-15 77.8
Msa1367600 MtrunA17_Chr5g0429221 22.113 407 278 14 116 518 1 372 1.65e-14 75.5
Msa1367600 MtrunA17_Chr8g0349951 27.976 168 104 3 115 282 7 157 7.39e-14 69.3
Msa1367600 MtrunA17_Chr2g0301281 30.978 184 113 6 111 286 34 211 1.32e-13 73.6
Msa1367600 MtrunA17_Chr4g0062321 24.268 239 143 8 229 457 23 233 7.85e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1367600 AT3G06980.1 66.741 451 133 3 88 523 331 779 0.0 637
Msa1367600 AT4G09730.1 31.490 416 244 12 116 517 111 499 4.54e-56 198
Msa1367600 AT1G55150.1 30.628 382 232 13 116 493 98 450 4.95e-43 160
Msa1367600 AT1G55150.2 30.628 382 232 13 116 493 123 475 1.37e-42 159
Msa1367600 AT5G63120.2 28.861 395 246 12 116 506 164 527 6.87e-39 150
Msa1367600 AT5G14610.5 28.534 382 235 13 116 492 168 516 3.12e-38 149
Msa1367600 AT5G14610.2 28.534 382 235 13 116 492 160 508 3.42e-38 149
Msa1367600 AT5G14610.6 28.534 382 235 13 116 492 160 508 3.77e-38 148
Msa1367600 AT5G14610.7 28.533 375 227 14 123 492 39 377 2.19e-36 142
Msa1367600 AT5G14610.3 28.533 375 227 14 123 492 39 377 2.19e-36 142
Msa1367600 AT3G01540.4 28.158 380 239 12 116 492 157 505 3.93e-36 142
Msa1367600 AT3G01540.2 28.158 380 239 12 116 492 157 505 3.93e-36 142
Msa1367600 AT3G01540.3 28.158 380 239 12 116 492 157 505 3.93e-36 142
Msa1367600 AT3G01540.1 28.158 380 239 12 116 492 157 505 4.29e-36 142
Msa1367600 AT2G47330.1 26.835 395 253 11 116 505 227 590 1.25e-35 142
Msa1367600 AT5G14610.1 28.689 366 223 13 132 492 244 576 2.31e-35 140
Msa1367600 AT1G31970.1 29.146 398 248 14 109 499 108 478 1.18e-34 137
Msa1367600 AT5G51280.1 26.632 383 248 11 116 491 145 501 1.78e-34 137
Msa1367600 AT5G65900.1 27.027 407 242 13 111 502 148 514 4.09e-34 136
Msa1367600 AT5G60990.1 27.540 374 241 10 116 484 8 356 2.57e-33 132
Msa1367600 AT2G42520.2 27.723 404 253 13 116 506 158 535 3.53e-33 134
Msa1367600 AT2G42520.1 27.723 404 253 13 116 506 158 535 3.53e-33 134
Msa1367600 AT2G42520.3 27.723 404 253 13 116 506 158 535 3.53e-33 134
Msa1367600 AT4G33370.1 26.371 383 249 11 116 491 96 452 8.18e-33 132
Msa1367600 AT5G26742.1 28.954 373 231 11 130 497 115 458 1.84e-32 132
Msa1367600 AT5G26742.2 28.954 373 231 11 130 497 115 458 1.84e-32 132
Msa1367600 AT3G06480.1 27.481 393 252 12 118 506 436 799 3.41e-32 132
Msa1367600 AT4G00660.1 28.042 378 232 11 107 481 121 461 6.93e-32 129
Msa1367600 AT4G00660.2 28.042 378 232 11 107 481 121 461 6.93e-32 129
Msa1367600 AT1G16280.1 26.847 406 253 13 108 506 51 419 7.42e-32 128
Msa1367600 AT3G58510.1 27.737 411 254 13 116 510 150 533 7.99e-32 130
Msa1367600 AT3G58510.3 27.737 411 254 13 116 510 150 533 7.99e-32 130
Msa1367600 AT3G58510.2 27.737 411 254 13 116 510 150 533 7.99e-32 130
Msa1367600 AT3G61240.2 28.042 378 232 10 107 481 114 454 9.35e-32 128
Msa1367600 AT3G61240.1 28.042 378 232 10 107 481 114 454 9.35e-32 128
Msa1367600 AT3G58570.1 27.500 400 259 12 116 506 145 522 1.62e-31 129
Msa1367600 AT1G51380.1 26.720 378 244 10 116 493 21 365 1.89e-31 125
Msa1367600 AT1G71370.1 28.894 398 218 14 128 502 27 382 2.18e-31 128
Msa1367600 AT3G18600.1 27.688 372 215 13 141 498 113 444 2.45e-31 128
Msa1367600 AT2G45810.1 28.087 413 247 12 80 481 111 484 2.60e-31 127
Msa1367600 AT5G26742.3 29.805 359 221 13 142 497 35 365 3.47e-31 128
Msa1367600 AT1G20920.2 26.562 384 245 12 116 493 190 542 4.46e-31 128
Msa1367600 AT1G20920.4 26.562 384 245 12 116 493 528 880 1.06e-30 127
Msa1367600 AT1G20920.6 26.562 384 245 12 116 493 528 880 1.06e-30 127
Msa1367600 AT1G20920.3 26.562 384 245 12 116 493 528 880 1.06e-30 127
Msa1367600 AT1G20920.7 26.562 384 245 12 116 493 528 880 1.06e-30 127
Msa1367600 AT1G20920.5 26.562 384 245 12 116 493 528 880 1.06e-30 127
Msa1367600 AT1G20920.1 26.562 384 245 12 116 493 528 880 1.06e-30 127
Msa1367600 AT5G14610.4 27.221 349 217 12 116 459 168 484 4.80e-30 123
Msa1367600 AT3G09720.2 26.835 395 248 13 116 504 136 495 7.05e-30 123
Msa1367600 AT3G09720.1 26.835 395 248 13 116 504 136 495 7.05e-30 123
Msa1367600 AT1G77030.1 28.571 357 220 10 140 493 51 375 1.67e-29 123
Msa1367600 AT3G22330.1 25.490 408 262 12 118 519 105 476 3.79e-29 122
Msa1367600 AT5G63120.1 28.739 341 209 11 116 452 164 474 4.73e-29 120
Msa1367600 AT5G54910.1 26.961 408 249 15 111 506 65 435 5.08e-29 122
Msa1367600 AT4G16630.1 28.133 391 246 12 114 500 164 523 5.40e-29 122
Msa1367600 AT5G63120.3 28.739 341 209 11 116 452 164 474 5.71e-29 120
Msa1367600 AT5G63120.4 28.739 341 209 11 116 452 164 474 5.71e-29 120
Msa1367600 AT5G63120.5 28.739 341 209 11 116 452 164 474 5.71e-29 120
Msa1367600 AT3G02065.3 27.865 384 237 13 118 493 111 462 2.15e-28 119
Msa1367600 AT3G02065.2 27.865 384 237 13 118 493 111 462 2.15e-28 119
Msa1367600 AT3G22310.2 25.000 408 264 12 118 519 117 488 6.21e-28 118
Msa1367600 AT3G22310.1 25.000 408 264 12 118 519 117 488 6.64e-28 118
Msa1367600 AT5G05450.1 27.041 392 232 14 128 497 27 386 7.53e-28 117
Msa1367600 AT3G19760.1 25.707 389 256 9 116 504 34 389 1.76e-27 114
Msa1367600 AT3G09620.2 25.393 382 217 11 119 493 399 719 2.32e-27 117
Msa1367600 AT3G09620.1 25.393 382 217 11 119 493 398 718 2.53e-27 117
Msa1367600 AT3G02065.1 28.329 353 223 12 143 493 1 325 3.39e-27 113
Msa1367600 AT2G33730.1 24.318 440 284 14 99 508 279 699 1.54e-25 111
Msa1367600 AT5G11170.1 26.355 406 241 13 102 491 29 392 3.04e-25 108
Msa1367600 AT5G11200.1 26.355 406 241 13 102 491 29 392 3.04e-25 108
Msa1367600 AT4G34910.1 24.634 410 240 11 117 482 46 430 9.50e-25 108
Msa1367600 AT3G06480.2 25.648 347 229 10 118 463 436 754 2.60e-24 107
Msa1367600 AT3G13920.3 27.083 384 233 10 117 493 29 372 3.33e-24 105
Msa1367600 AT3G13920.1 27.083 384 233 10 117 493 39 382 3.52e-24 105
Msa1367600 AT3G13920.2 27.083 384 233 10 117 493 39 382 4.18e-24 105
Msa1367600 AT3G13920.5 27.083 384 233 10 117 493 43 386 4.66e-24 105
Msa1367600 AT1G54270.1 25.995 377 246 8 117 493 39 382 6.00e-24 104
Msa1367600 AT3G16840.2 26.406 409 236 13 127 482 201 597 1.61e-23 105
Msa1367600 AT3G16840.1 26.406 409 236 13 127 482 200 596 1.81e-23 105
Msa1367600 AT2G07750.1 25.679 405 254 15 107 494 365 739 2.01e-23 105
Msa1367600 AT1G28180.1 28.451 355 213 13 163 508 19 341 3.03e-23 101
Msa1367600 AT2G40700.1 25.785 446 251 21 111 491 24 454 8.68e-23 102
Msa1367600 AT5G62190.1 26.374 364 201 9 143 483 122 441 1.24e-22 102
Msa1367600 AT5G11200.3 25.057 439 246 15 102 491 29 433 1.65e-22 100
Msa1367600 AT1G12770.2 23.587 407 267 9 113 484 106 503 2.03e-22 101
Msa1367600 AT1G12770.1 23.587 407 267 9 113 484 106 503 2.03e-22 101
Msa1367600 AT5G08610.1 26.289 388 233 15 114 487 392 740 2.30e-22 101
Msa1367600 AT1G72730.1 26.471 374 226 11 128 493 52 384 2.91e-22 99.8
Msa1367600 AT3G13920.4 27.083 384 228 11 117 493 39 377 7.12e-22 98.2
Msa1367600 AT1G54270.2 25.995 377 241 9 117 493 39 377 1.15e-21 97.8
Msa1367600 AT5G11170.2 27.907 344 192 12 162 491 8 309 1.19e-21 96.7
Msa1367600 AT1G63250.1 25.000 404 258 15 107 494 318 692 2.34e-21 98.6
Msa1367600 AT5G11200.2 23.333 450 258 14 102 491 29 451 9.30e-21 95.9
Msa1367600 AT5G63630.1 25.320 391 233 13 114 487 64 412 3.08e-20 94.4
Msa1367600 AT5G63630.2 25.570 395 227 16 114 487 258 606 3.13e-20 95.1
Msa1367600 AT5G08620.1 24.422 389 256 12 112 487 75 438 1.97e-19 92.0
Msa1367600 AT5G19210.2 24.874 398 251 14 105 481 64 434 3.13e-19 90.9
Msa1367600 AT1G51380.2 24.632 272 182 5 116 387 21 269 9.08e-19 87.0
Msa1367600 AT1G51380.4 26.866 201 135 3 116 316 21 209 5.75e-17 82.0
Msa1367600 AT1G51380.3 28.293 205 127 4 116 316 21 209 6.92e-17 82.0
Msa1367600 AT3G53110.1 23.866 419 269 13 108 510 82 466 4.43e-16 81.3
Msa1367600 AT1G59990.2 27.778 216 132 6 304 515 354 549 6.42e-15 77.8
Msa1367600 AT1G59990.1 27.778 216 132 6 304 515 354 549 7.46e-15 77.8

Find 136 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGAAGTGTCCCAGTTTA+TGG 0.122594 tig0018513:+244516 Msa1367600:CDS
CAGCATCTTTAGATGGTCTT+TGG 0.216057 tig0018513:+245118 Msa1367600:three_prime_UTR
ATATTACTTAGTAATTTCTT+AGG 0.287410 tig0018513:+245165 Msa1367600:three_prime_UTR
ATTGCTGACCAGAGTGGTTC+TGG 0.306260 tig0018513:+242589 Msa1367600:CDS
GCCCTGTCCCCTGGCACCTC+TGG 0.308184 tig0018513:-244787 None:intergenic
TAGACATTGAACGACAATTA+TGG 0.323737 tig0018513:-242747 None:intergenic
TTGGAAAGGGTGCTCTCAAC+TGG 0.323947 tig0018513:+244958 Msa1367600:three_prime_UTR
TCATGAAAATAAAATTTGAT+TGG 0.327018 tig0018513:-245256 None:intergenic
ATAAACTGGGACACTTCTTT+TGG 0.327753 tig0018513:-244514 None:intergenic
TGTCCGTGCAAACCATAAAC+TGG 0.332471 tig0018513:-244528 None:intergenic
TTGCAGAACACAATAGTTCT+TGG 0.346234 tig0018513:-244249 None:intergenic
TCATTTGCTCCTGTTATTGC+CGG 0.349281 tig0018513:+242553 Msa1367600:CDS
AGCATCTTTAGATGGTCTTT+GGG 0.352962 tig0018513:+245119 Msa1367600:three_prime_UTR
GATGAGGTTGATATCCTCTT+TGG 0.353589 tig0018513:+243100 Msa1367600:CDS
GGTAGCACCGACAATATTCT+AGG 0.364067 tig0018513:+245037 Msa1367600:three_prime_UTR
GGCGAGTTAAAGAGAGGTTA+TGG 0.368794 tig0018513:-242510 None:intergenic
CAAGACTTTCCGGCAATAAC+AGG 0.372706 tig0018513:-242562 None:intergenic
AAAAGAGAAGAGAATCAAAA+TGG 0.386747 tig0018513:+242096 Msa1367600:exon
AGCAATTATACAAGACTTTC+CGG 0.389114 tig0018513:-242572 None:intergenic
GGCAAAGGAAGGAAATCTTT+TGG 0.389304 tig0018513:+245016 Msa1367600:three_prime_UTR
CATGAAAATAAAATTTGATT+GGG 0.393804 tig0018513:-245255 None:intergenic
AGCCAGAGGTGCCAGGGGAC+AGG 0.398550 tig0018513:+244785 Msa1367600:CDS
GTCGATAAAACCACGAGTTT+CGG 0.403323 tig0018513:+242247 Msa1367600:CDS
GAAGAAGACAGAGTGTTTAC+TGG 0.408498 tig0018513:-242182 None:intergenic
CACAGCTGAGTTAGCTTCTC+AGG 0.409704 tig0018513:+242720 Msa1367600:CDS
AATTACTAAGTAATATGATT+AGG 0.415417 tig0018513:-245158 None:intergenic
TGTCGTTCAATGTCTAAATC+TGG 0.417609 tig0018513:+242754 Msa1367600:CDS
GAGTTGGATGGGGAGACAAT+AGG 0.426703 tig0018513:+242401 Msa1367600:CDS
AAGGCATTTATCTTTGTTGT+TGG 0.426934 tig0018513:+244810 Msa1367600:CDS
TGCAGAACACAATAGTTCTT+GGG 0.438418 tig0018513:-244248 None:intergenic
CCCATGACCATTTCACAATC+AGG 0.439831 tig0018513:-243244 None:intergenic
GAGCTGAAGAAGTAGGAAGT+TGG 0.443767 tig0018513:+244921 Msa1367600:three_prime_UTR
TGATTGCCAGCATCTTTAGA+TGG 0.444955 tig0018513:+245111 Msa1367600:three_prime_UTR
TCCACTGCATGATGTACCTT+CGG 0.449294 tig0018513:+244884 Msa1367600:CDS
GAGAGATTCAATCATGAAAT+CGG 0.449692 tig0018513:-242488 None:intergenic
AGTTGGATGGGGAGACAATA+GGG 0.452318 tig0018513:+242402 Msa1367600:CDS
GAAGAACAGCCAGAGGTGCC+AGG 0.461221 tig0018513:+244778 Msa1367600:CDS
CTAAAATCATTTAAAGACAT+TGG 0.461700 tig0018513:+242460 Msa1367600:CDS
AGTGAAACCTGACCTCTTCA+AGG 0.469671 tig0018513:-243294 None:intergenic
AACTCGCCCTTCCAACATAC+AGG 0.470926 tig0018513:+242525 Msa1367600:CDS
AACTCATTCGAGAGTTGGAT+GGG 0.471462 tig0018513:+242390 Msa1367600:CDS
AAATGCCTTGCCCTGTCCCC+TGG 0.473330 tig0018513:-244796 None:intergenic
TGTCTGAGACGTTGAATGAT+TGG 0.476607 tig0018513:-242634 None:intergenic
AGTTTATGGTTTGCACGGAC+AGG 0.484625 tig0018513:+244530 Msa1367600:CDS
AACTTGTAACAGAGCTTCGC+GGG 0.488229 tig0018513:+244677 Msa1367600:intron
AGGTGCCAGGGGACAGGGCA+AGG 0.488567 tig0018513:+244791 Msa1367600:CDS
GAATTCCCTTTCTATCAAAA+CGG 0.499892 tig0018513:-244411 None:intergenic
TCTTTAGATGGTCTTTGGGC+AGG 0.501801 tig0018513:+245123 Msa1367600:three_prime_UTR
GCCAGAGGTGCCAGGGGACA+GGG 0.502782 tig0018513:+244786 Msa1367600:CDS
ATTATGTTGCAGTGCTGTCT+TGG 0.503149 tig0018513:+243078 Msa1367600:intron
TTGCTGTTTAGCATCGGAGT+TGG 0.503766 tig0018513:+242151 Msa1367600:CDS
TCCTGATTGTGAAATGGTCA+TGG 0.506213 tig0018513:+243243 Msa1367600:CDS
GTAGATTGTAGTGGGGAAGA+TGG 0.506554 tig0018513:+244150 Msa1367600:CDS
AGCTGCTCTTCTGCAGCTTG+CGG 0.507830 tig0018513:+244212 Msa1367600:CDS
TTTAATTGATTGCTTGGAAA+GGG 0.510457 tig0018513:+244945 Msa1367600:three_prime_UTR
TCATCGACCTAGAATATTGT+CGG 0.512080 tig0018513:-245044 None:intergenic
TGGCGATGAGGACTTCGAAA+AGG 0.514933 tig0018513:+243120 Msa1367600:CDS
AGATAATAGTAGATTGTAGT+GGG 0.515530 tig0018513:+244142 Msa1367600:intron
ATGCTTGATTAGTTCTTCAC+CGG 0.515910 tig0018513:+243150 Msa1367600:CDS
CAACTCATTCGAGAGTTGGA+TGG 0.516133 tig0018513:+242389 Msa1367600:CDS
CAAAGACCATCTAAAGATGC+TGG 0.522860 tig0018513:-245117 None:intergenic
GGTTGATGAGGAAGAGAAAA+CGG 0.523534 tig0018513:-242879 None:intergenic
CTTAGGAATTGTATTACCAC+CGG 0.524593 tig0018513:+245182 Msa1367600:three_prime_UTR
ACTGCAACTCATTCGAGAGT+TGG 0.528094 tig0018513:+242385 Msa1367600:CDS
CAATAGGGTTAGCAGTCAAT+CGG 0.532781 tig0018513:+242417 Msa1367600:CDS
GGCTCCTCATAGCAAAAGCA+AGG 0.533958 tig0018513:+245081 Msa1367600:three_prime_UTR
AGTGAATATGTACGGCGTGT+TGG 0.534281 tig0018513:+244756 Msa1367600:CDS
CCTGATTGTGAAATGGTCAT+GGG 0.535391 tig0018513:+243244 Msa1367600:CDS
GTCCCAGTTTATGGTTTGCA+CGG 0.536407 tig0018513:+244525 Msa1367600:CDS
GTGACAAGCATAGATTTGAA+TGG 0.537448 tig0018513:-242784 None:intergenic
AAATCTATGCTTGTCACTGG+TGG 0.541886 tig0018513:+242790 Msa1367600:CDS
ATCACGGCTTACTAGTATGA+AGG 0.552151 tig0018513:+244474 Msa1367600:CDS
TTGCAGTGCTGTCTTGGATG+AGG 0.552233 tig0018513:+243084 Msa1367600:intron
CGAAGTCCTCATCGCCAAAG+AGG 0.554253 tig0018513:-243114 None:intergenic
CAGATAATAGTAGATTGTAG+TGG 0.557322 tig0018513:+244141 Msa1367600:intron
TTCAAATCTATGCTTGTCAC+TGG 0.558308 tig0018513:+242787 Msa1367600:CDS
GTGGTTGCGCAAGGTGTTTG+TGG 0.559691 tig0018513:+242121 Msa1367600:CDS
GTATTGAGAGCTGAAGAAGT+AGG 0.560738 tig0018513:+244914 Msa1367600:exon
TGGAAGGGCGAGTTAAAGAG+AGG 0.560834 tig0018513:-242516 None:intergenic
AAATGACATGGCCTGTATGT+TGG 0.565806 tig0018513:-242536 None:intergenic
AGTAATGGAAAGAAATCGGA+AGG 0.566217 tig0018513:+244857 Msa1367600:CDS
TCGATGAAACGTGCATTGCT+AGG 0.568808 tig0018513:+245060 Msa1367600:three_prime_UTR
AAGAACAGCCAGAGGTGCCA+GGG 0.570215 tig0018513:+244779 Msa1367600:CDS
GAACTTATTCGATGCATACT+AGG 0.571644 tig0018513:-243268 None:intergenic
AATAAATATTGTGTGTCCAC+CGG 0.571880 tig0018513:-243169 None:intergenic
CAACTTGTAACAGAGCTTCG+CGG 0.572338 tig0018513:+244676 Msa1367600:intron
TGGAAAGGGTGCTCTCAACT+GGG 0.579482 tig0018513:+244959 Msa1367600:three_prime_UTR
AAGTCTAACATGCATGGCAA+AGG 0.579671 tig0018513:+245001 Msa1367600:three_prime_UTR
CTTGATTAGTTCTTCACCGG+TGG 0.581413 tig0018513:+243153 Msa1367600:CDS
AAAGCGTTGCTGTTTAGCAT+CGG 0.582268 tig0018513:+242145 Msa1367600:CDS
TGTGTCATGGCAGCATGGAA+AGG 0.582945 tig0018513:-244448 None:intergenic
GGTGCGAGTATAACAAGAGT+AGG 0.587052 tig0018513:-242697 None:intergenic
CTCAGACAACAAGAACTACA+AGG 0.588339 tig0018513:+242649 Msa1367600:CDS
TGATATCCTCTTTGGCGATG+AGG 0.588829 tig0018513:+243108 Msa1367600:CDS
CTAACATGCATGGCAAAGGA+AGG 0.589079 tig0018513:+245005 Msa1367600:three_prime_UTR
TGCACTTAACTAATCTAACA+TGG 0.590356 tig0018513:+242911 Msa1367600:CDS
ATGTCTTTCCAGAACCACTC+TGG 0.590455 tig0018513:-242597 None:intergenic
AATAAGTTCTCGCCTTGAAG+AGG 0.590513 tig0018513:+243282 Msa1367600:CDS
TGCAGGAGTGTCATTTCCGG+TGG 0.590891 tig0018513:-245198 None:intergenic
CTGAGAAGCTAACTCAGCTG+TGG 0.591686 tig0018513:-242719 None:intergenic
TTTCTCTTCCTCATCAACCA+AGG 0.592789 tig0018513:+242883 Msa1367600:CDS
AAGCCGTGATTCTTGTGTCA+TGG 0.593997 tig0018513:-244461 None:intergenic
TATTGTAAGTCTAACATGCA+TGG 0.594332 tig0018513:+244995 Msa1367600:three_prime_UTR
ACACGCCGTACATATTCACT+TGG 0.594509 tig0018513:-244753 None:intergenic
GGGAATTGACTTCACTAGAG+TGG 0.597817 tig0018513:+244698 Msa1367600:CDS
TCAACTCGACACTTTAAACC+AGG 0.598198 tig0018513:+242828 Msa1367600:CDS
AAGAAGACAGAGTGTTTACT+GGG 0.599621 tig0018513:-242181 None:intergenic
GTCCGTGCAAACCATAAACT+GGG 0.602781 tig0018513:-244527 None:intergenic
ACATATTCACTTGGATCACG+TGG 0.605024 tig0018513:-244744 None:intergenic
GTGATCCAAGTGAATATGTA+CGG 0.607674 tig0018513:+244748 Msa1367600:CDS
TTCAATGTCTAAATCTGGCA+AGG 0.610738 tig0018513:+242759 Msa1367600:CDS
ATGAGGAAGAGAAAACGGCC+AGG 0.612771 tig0018513:-242874 None:intergenic
TGAGAAGCTAACTCAGCTGT+GGG 0.613832 tig0018513:-242718 None:intergenic
AAAATGGCGGTGGTTGCGCA+AGG 0.615353 tig0018513:+242112 Msa1367600:exon
GAAGAGAATCAAAATGGCGG+TGG 0.615716 tig0018513:+242102 Msa1367600:exon
GACATGGCCTGTATGTTGGA+AGG 0.625996 tig0018513:-242532 None:intergenic
CTGCCATGACACAAGAATCA+CGG 0.635761 tig0018513:+244458 Msa1367600:CDS
GATAATAGTAGATTGTAGTG+GGG 0.637024 tig0018513:+244143 Msa1367600:intron
AGAACAGCCAGAGGTGCCAG+GGG 0.638006 tig0018513:+244780 Msa1367600:CDS
GCCGAAGGTACATCATGCAG+TGG 0.640301 tig0018513:-244885 None:intergenic
TGTATAATTGCTGACCAGAG+TGG 0.648838 tig0018513:+242583 Msa1367600:CDS
TCTCAATACTCATAAGCCGA+AGG 0.655130 tig0018513:-244900 None:intergenic
ACATGGCCTGTATGTTGGAA+GGG 0.662222 tig0018513:-242531 None:intergenic
TAGGGTTAGCAGTCAATCGG+AGG 0.663524 tig0018513:+242420 Msa1367600:CDS
ATTCTTGTGTCATGGCAGCA+TGG 0.663708 tig0018513:-244453 None:intergenic
ACTCATTCGAGAGTTGGATG+GGG 0.667637 tig0018513:+242391 Msa1367600:CDS
CGTGTTGGAAGAACAGCCAG+AGG 0.669248 tig0018513:+244771 Msa1367600:CDS
GATGTCTTGATAGCTACACC+TGG 0.674489 tig0018513:+242856 Msa1367600:CDS
GCTCCTCATAGCAAAAGCAA+GGG 0.695618 tig0018513:+245082 Msa1367600:three_prime_UTR
CAACTCGACACTTTAAACCA+GGG 0.695695 tig0018513:+242829 Msa1367600:CDS
GTAATGGAAAGAAATCGGAA+GGG 0.700702 tig0018513:+244858 Msa1367600:CDS
AATAACAGGAGCAAATGACA+TGG 0.700797 tig0018513:-242548 None:intergenic
ACTTGTAACAGAGCTTCGCG+GGG 0.711965 tig0018513:+244678 Msa1367600:intron
CATATTCACTTGGATCACGT+GGG 0.715544 tig0018513:-244743 None:intergenic
AGAGAAGAGAATCAAAATGG+CGG 0.724812 tig0018513:+242099 Msa1367600:exon
CTATCAAGACATCAACACCC+TGG 0.726139 tig0018513:-242846 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATAATATGAAATAAA+AGG + tig0018513:243728-243747 Msa1367600:intron 10.0%
!! ATTCATAATATGAAATAAAA+GGG + tig0018513:243729-243748 Msa1367600:intron 10.0%
!!! AATATTAATTTGAAATTAAG+TGG - tig0018513:244038-244057 None:intergenic 10.0%
!! CAAAAAATTACAAATATAAT+AGG + tig0018513:245219-245238 Msa1367600:three_prime_UTR 10.0%
!! GTTAAGATAAATTAAATCAT+TGG - tig0018513:243048-243067 None:intergenic 15.0%
!!! GTTATTGTTTTACTATTTAT+AGG + tig0018513:243800-243819 Msa1367600:intron 15.0%
!! TAATATATTCTTAAATTGCT+GGG + tig0018513:243965-243984 Msa1367600:intron 15.0%
!!! CTTTTTGTTACTTTTTATTT+TGG + tig0018513:244327-244346 Msa1367600:intron 15.0%
!! AATTACTAAGTAATATGATT+AGG - tig0018513:245161-245180 None:intergenic 15.0%
!! ATATTACTTAGTAATTTCTT+AGG + tig0018513:245165-245184 Msa1367600:three_prime_UTR 15.0%
!!! TTATATTTGTAATTTTTTGC+AGG - tig0018513:245218-245237 None:intergenic 15.0%
!! CATGAAAATAAAATTTGATT+GGG - tig0018513:245258-245277 None:intergenic 15.0%
!! TCATGAAAATAAAATTTGAT+TGG - tig0018513:245259-245278 None:intergenic 15.0%
!!! TTTCAATTTTCAACAAGATA+AGG - tig0018513:242065-242084 None:intergenic 20.0%
!! CTAAAATCATTTAAAGACAT+TGG + tig0018513:242460-242479 Msa1367600:CDS 20.0%
!! AGAAATCAATTTATAACACA+TGG - tig0018513:243012-243031 None:intergenic 20.0%
!!! CTTTCTATTTTATTCATCTT+AGG + tig0018513:243331-243350 Msa1367600:intron 20.0%
!! ATTCAATTTAAATCTCATGT+GGG - tig0018513:243445-243464 None:intergenic 20.0%
!! AATTCAATTTAAATCTCATG+TGG - tig0018513:243446-243465 None:intergenic 20.0%
!! ATACACAATGATATGTATAA+AGG - tig0018513:243484-243503 None:intergenic 20.0%
!! TTTATACATATCATTGTGTA+TGG + tig0018513:243483-243502 Msa1367600:intron 20.0%
!! TCCAGTATTAAATTTATTAG+TGG - tig0018513:243647-243666 None:intergenic 20.0%
!!! GTATTTCTTTTTGAATAGTA+TGG - tig0018513:243672-243691 None:intergenic 20.0%
!!! GAAATTTTGAGAAATGTTTA+GGG - tig0018513:243702-243721 None:intergenic 20.0%
!!! TGAAATTTTGAGAAATGTTT+AGG - tig0018513:243703-243722 None:intergenic 20.0%
!! TTGTACTAGTTGTATATAAT+TGG - tig0018513:243780-243799 None:intergenic 20.0%
!! GCAATTTAAGAATATATTAC+AGG - tig0018513:243964-243983 None:intergenic 20.0%
!! GTAATATATTCTTAAATTGC+TGG + tig0018513:243964-243983 Msa1367600:intron 20.0%
!! AATATATTCTTAAATTGCTG+GGG + tig0018513:243966-243985 Msa1367600:intron 20.0%
!!! AAAAAGTAATGGAAAGAAAT+CGG + tig0018513:244853-244872 Msa1367600:CDS 20.0%
! AAAAGAGAAGAGAATCAAAA+TGG + tig0018513:242096-242115 Msa1367600:exon 25.0%
!! TGATTTTAGACTGAAAAAGT+TGG - tig0018513:242449-242468 None:intergenic 25.0%
! TTAACTAATCTAACATGGTA+TGG + tig0018513:242916-242935 Msa1367600:intron 25.0%
! AAAATGATAGGTGATAGAAA+AGG - tig0018513:242958-242977 None:intergenic 25.0%
! GATAAATTAAATCATTGGTG+CGG - tig0018513:243043-243062 None:intergenic 25.0%
!!! AGTTTGCTGTAAACATTTTT+TGG - tig0018513:243211-243230 None:intergenic 25.0%
! AAAAAATGTTTACAGCAAAC+TGG + tig0018513:243210-243229 Msa1367600:CDS 25.0%
!!! GTTGGTAACAATTATGAAAA+TGG + tig0018513:243519-243538 Msa1367600:intron 25.0%
! GCCACTAATAAATTTAATAC+TGG + tig0018513:243643-243662 Msa1367600:intron 25.0%
! AGATAATAGTAGATTGTAGT+GGG + tig0018513:244142-244161 Msa1367600:intron 25.0%
!!! ATTAAACCGTTTTGATAGAA+AGG + tig0018513:244405-244424 Msa1367600:CDS 25.0%
!!! TTAAACCGTTTTGATAGAAA+GGG + tig0018513:244406-244425 Msa1367600:CDS 25.0%
! GTGTTACAAATAATTCATTG+TGG + tig0018513:244653-244672 Msa1367600:intron 25.0%
!!! TTTTAATTGATTGCTTGGAA+AGG + tig0018513:244944-244963 Msa1367600:three_prime_UTR 25.0%
! TTTAATTGATTGCTTGGAAA+GGG + tig0018513:244945-244964 Msa1367600:three_prime_UTR 25.0%
GAGAGATTCAATCATGAAAT+CGG - tig0018513:242491-242510 None:intergenic 30.0%
AGCAATTATACAAGACTTTC+CGG - tig0018513:242575-242594 None:intergenic 30.0%
TAGACATTGAACGACAATTA+TGG - tig0018513:242750-242769 None:intergenic 30.0%
TGCACTTAACTAATCTAACA+TGG + tig0018513:242911-242930 Msa1367600:CDS 30.0%
TAATCTAACATGGTATGGTA+TGG + tig0018513:242921-242940 Msa1367600:intron 30.0%
GGTTTAGTCAACAAAATGAT+AGG - tig0018513:242970-242989 None:intergenic 30.0%
AATAAATATTGTGTGTCCAC+CGG - tig0018513:243172-243191 None:intergenic 30.0%
! AGTTTTTCCTGATTGTGAAA+TGG + tig0018513:243237-243256 Msa1367600:CDS 30.0%
CTGTGATATGAGAAAACATT+TGG + tig0018513:243403-243422 Msa1367600:intron 30.0%
AGGGATAGTAAAATCGAAAA+TGG + tig0018513:243748-243767 Msa1367600:intron 30.0%
TGAAATTAAGTGGTCATTAC+TGG - tig0018513:244028-244047 None:intergenic 30.0%
CAGATAATAGTAGATTGTAG+TGG + tig0018513:244141-244160 Msa1367600:intron 30.0%
GATAATAGTAGATTGTAGTG+GGG + tig0018513:244143-244162 Msa1367600:intron 30.0%
GAATTCCCTTTCTATCAAAA+CGG - tig0018513:244414-244433 None:intergenic 30.0%
! AAGGCATTTATCTTTGTTGT+TGG + tig0018513:244810-244829 Msa1367600:CDS 30.0%
!!! TTCCATTACTTTTTGTGCAA+GGG - tig0018513:244847-244866 None:intergenic 30.0%
!!! TTTCCATTACTTTTTGTGCA+AGG - tig0018513:244848-244867 None:intergenic 30.0%
!!! GTTGGTTTTAATTGATTGCT+TGG + tig0018513:244939-244958 Msa1367600:three_prime_UTR 30.0%
TATTGTAAGTCTAACATGCA+TGG + tig0018513:244995-245014 Msa1367600:three_prime_UTR 30.0%
AGAGAAGAGAATCAAAATGG+CGG + tig0018513:242099-242118 Msa1367600:exon 35.0%
! AAGAAGACAGAGTGTTTACT+GGG - tig0018513:242184-242203 None:intergenic 35.0%
!! GGCGGATTTTGAATTTGAAT+TGG - tig0018513:242227-242246 None:intergenic 35.0%
! TTGTAGTTGTTTGCGTTTTG+TGG - tig0018513:242326-242345 None:intergenic 35.0%
AATAACAGGAGCAAATGACA+TGG - tig0018513:242551-242570 None:intergenic 35.0%
TGTCGTTCAATGTCTAAATC+TGG + tig0018513:242754-242773 Msa1367600:CDS 35.0%
TTCAATGTCTAAATCTGGCA+AGG + tig0018513:242759-242778 Msa1367600:CDS 35.0%
GTGACAAGCATAGATTTGAA+TGG - tig0018513:242787-242806 None:intergenic 35.0%
TTCAAATCTATGCTTGTCAC+TGG + tig0018513:242787-242806 Msa1367600:CDS 35.0%
!!! TGTCGAGTTGAGTTTTTTGT+CGG - tig0018513:242819-242838 None:intergenic 35.0%
TAGTTAAGTGCAAAAAGCCT+TGG - tig0018513:242903-242922 None:intergenic 35.0%
GGTAAATGACAAGTGTATTC+AGG - tig0018513:242991-243010 None:intergenic 35.0%
! ATGCTTGATTAGTTCTTCAC+CGG + tig0018513:243150-243169 Msa1367600:CDS 35.0%
GAACTTATTCGATGCATACT+AGG - tig0018513:243271-243290 None:intergenic 35.0%
AACGTATTCCCTAAATTTGC+TGG + tig0018513:243368-243387 Msa1367600:intron 35.0%
TACTATTTATAGGTCCGCTT+TGG + tig0018513:243810-243829 Msa1367600:intron 35.0%
!! CTTAAATTGCTGGGGTATTT+TGG + tig0018513:243974-243993 Msa1367600:intron 35.0%
TGCAGAACACAATAGTTCTT+GGG - tig0018513:244251-244270 None:intergenic 35.0%
TTGCAGAACACAATAGTTCT+TGG - tig0018513:244252-244271 None:intergenic 35.0%
! ACAAAGTATTCTGAACTCTC+AGG + tig0018513:244271-244290 Msa1367600:intron 35.0%
! ATAAACTGGGACACTTCTTT+TGG - tig0018513:244517-244536 None:intergenic 35.0%
!! AAAAGAAGTGTCCCAGTTTA+TGG + tig0018513:244516-244535 Msa1367600:CDS 35.0%
TATTCATCTGTTTATCTCGC+TGG + tig0018513:244553-244572 Msa1367600:intron 35.0%
GTGATCCAAGTGAATATGTA+CGG + tig0018513:244748-244767 Msa1367600:CDS 35.0%
ATCCCTTGCACAAAAAGTAA+TGG + tig0018513:244842-244861 Msa1367600:CDS 35.0%
! AGTAATGGAAAGAAATCGGA+AGG + tig0018513:244857-244876 Msa1367600:CDS 35.0%
! GTAATGGAAAGAAATCGGAA+GGG + tig0018513:244858-244877 Msa1367600:CDS 35.0%
TCATCGACCTAGAATATTGT+CGG - tig0018513:245047-245066 None:intergenic 35.0%
AGCATCTTTAGATGGTCTTT+GGG + tig0018513:245119-245138 Msa1367600:three_prime_UTR 35.0%
CTTAGGAATTGTATTACCAC+CGG + tig0018513:245182-245201 Msa1367600:three_prime_UTR 35.0%
!! AAAGCGTTGCTGTTTAGCAT+CGG + tig0018513:242145-242164 Msa1367600:CDS 40.0%
! GAAGAAGACAGAGTGTTTAC+TGG - tig0018513:242185-242204 None:intergenic 40.0%
!!! GAAACTCGTGGTTTTATCGA+CGG - tig0018513:242248-242267 None:intergenic 40.0%
GTCGATAAAACCACGAGTTT+CGG + tig0018513:242247-242266 Msa1367600:CDS 40.0%
!! TTTTAGTCTTCCGAAACTCG+TGG - tig0018513:242260-242279 None:intergenic 40.0%
!!! TGGTATTTTGCTTGGTTCTG+TGG - tig0018513:242306-242325 None:intergenic 40.0%
! GCGTTTTGTGGTATTTTGCT+TGG - tig0018513:242314-242333 None:intergenic 40.0%
AACTCATTCGAGAGTTGGAT+GGG + tig0018513:242390-242409 Msa1367600:CDS 40.0%
! CAATAGGGTTAGCAGTCAAT+CGG + tig0018513:242417-242436 Msa1367600:CDS 40.0%
AAATGACATGGCCTGTATGT+TGG - tig0018513:242539-242558 None:intergenic 40.0%
TCATTTGCTCCTGTTATTGC+CGG + tig0018513:242553-242572 Msa1367600:CDS 40.0%
TGTATAATTGCTGACCAGAG+TGG + tig0018513:242583-242602 Msa1367600:CDS 40.0%
! TGTCTGAGACGTTGAATGAT+TGG - tig0018513:242637-242656 None:intergenic 40.0%
CTCAGACAACAAGAACTACA+AGG + tig0018513:242649-242668 Msa1367600:CDS 40.0%
AAATCTATGCTTGTCACTGG+TGG + tig0018513:242790-242809 Msa1367600:CDS 40.0%
TCAACTCGACACTTTAAACC+AGG + tig0018513:242828-242847 Msa1367600:CDS 40.0%
CAACTCGACACTTTAAACCA+GGG + tig0018513:242829-242848 Msa1367600:CDS 40.0%
!! GGTTGATGAGGAAGAGAAAA+CGG - tig0018513:242882-242901 None:intergenic 40.0%
TTTCTCTTCCTCATCAACCA+AGG + tig0018513:242883-242902 Msa1367600:CDS 40.0%
ATTATGTTGCAGTGCTGTCT+TGG + tig0018513:243078-243097 Msa1367600:intron 40.0%
!! GATGAGGTTGATATCCTCTT+TGG + tig0018513:243100-243119 Msa1367600:CDS 40.0%
TCCTGATTGTGAAATGGTCA+TGG + tig0018513:243243-243262 Msa1367600:CDS 40.0%
CCTGATTGTGAAATGGTCAT+GGG + tig0018513:243244-243263 Msa1367600:CDS 40.0%
AATAAGTTCTCGCCTTGAAG+AGG + tig0018513:243282-243301 Msa1367600:CDS 40.0%
!! TATTCCCTAAATTTGCTGGC+TGG + tig0018513:243372-243391 Msa1367600:intron 40.0%
!! ATTCCCTAAATTTGCTGGCT+GGG + tig0018513:243373-243392 Msa1367600:intron 40.0%
AATCTCATGTGGGAGACAAA+AGG - tig0018513:243435-243454 None:intergenic 40.0%
CATATCATTGTGTATGGCAG+TGG + tig0018513:243489-243508 Msa1367600:intron 40.0%
GGTGCAGTCAACTCAATAAT+TGG + tig0018513:243584-243603 Msa1367600:intron 40.0%
AGTCAACTCAATAATTGGCG+CGG + tig0018513:243589-243608 Msa1367600:intron 40.0%
ATAATCAGCTGCTGTGTAAG+TGG + tig0018513:244092-244111 Msa1367600:intron 40.0%
TAATCAGCTGCTGTGTAAGT+GGG + tig0018513:244093-244112 Msa1367600:intron 40.0%
ATCACGGCTTACTAGTATGA+AGG + tig0018513:244474-244493 Msa1367600:CDS 40.0%
CATATTCACTTGGATCACGT+GGG - tig0018513:244746-244765 None:intergenic 40.0%
ACATATTCACTTGGATCACG+TGG - tig0018513:244747-244766 None:intergenic 40.0%
TCTCAATACTCATAAGCCGA+AGG - tig0018513:244903-244922 None:intergenic 40.0%
GTATTGAGAGCTGAAGAAGT+AGG + tig0018513:244914-244933 Msa1367600:exon 40.0%
AAGTCTAACATGCATGGCAA+AGG + tig0018513:245001-245020 Msa1367600:three_prime_UTR 40.0%
! GGCAAAGGAAGGAAATCTTT+TGG + tig0018513:245016-245035 Msa1367600:three_prime_UTR 40.0%
TGATTGCCAGCATCTTTAGA+TGG + tig0018513:245111-245130 Msa1367600:three_prime_UTR 40.0%
CAAAGACCATCTAAAGATGC+TGG - tig0018513:245120-245139 None:intergenic 40.0%
CAGCATCTTTAGATGGTCTT+TGG + tig0018513:245118-245137 Msa1367600:three_prime_UTR 40.0%
!!! TTTTGCAGGAGTGTCATTTC+CGG - tig0018513:245204-245223 None:intergenic 40.0%
GAAGAGAATCAAAATGGCGG+TGG + tig0018513:242102-242121 Msa1367600:exon 45.0%
!! TTGCTGTTTAGCATCGGAGT+TGG + tig0018513:242151-242170 Msa1367600:CDS 45.0%
ACTGCAACTCATTCGAGAGT+TGG + tig0018513:242385-242404 Msa1367600:CDS 45.0%
CAACTCATTCGAGAGTTGGA+TGG + tig0018513:242389-242408 Msa1367600:CDS 45.0%
ACTCATTCGAGAGTTGGATG+GGG + tig0018513:242391-242410 Msa1367600:CDS 45.0%
AGTTGGATGGGGAGACAATA+GGG + tig0018513:242402-242421 Msa1367600:CDS 45.0%
GGCGAGTTAAAGAGAGGTTA+TGG - tig0018513:242513-242532 None:intergenic 45.0%
ACATGGCCTGTATGTTGGAA+GGG - tig0018513:242534-242553 None:intergenic 45.0%
CAAGACTTTCCGGCAATAAC+AGG - tig0018513:242565-242584 None:intergenic 45.0%
ATGTCTTTCCAGAACCACTC+TGG - tig0018513:242600-242619 None:intergenic 45.0%
GGTGCGAGTATAACAAGAGT+AGG - tig0018513:242700-242719 None:intergenic 45.0%
TGAGAAGCTAACTCAGCTGT+GGG - tig0018513:242721-242740 None:intergenic 45.0%
CTATCAAGACATCAACACCC+TGG - tig0018513:242849-242868 None:intergenic 45.0%
! GATGTCTTGATAGCTACACC+TGG + tig0018513:242856-242875 Msa1367600:CDS 45.0%
! GCAAAAAGCCTTGGTTGATG+AGG - tig0018513:242894-242913 None:intergenic 45.0%
TGATATCCTCTTTGGCGATG+AGG + tig0018513:243108-243127 Msa1367600:CDS 45.0%
! CTTGATTAGTTCTTCACCGG+TGG + tig0018513:243153-243172 Msa1367600:CDS 45.0%
CCCATGACCATTTCACAATC+AGG - tig0018513:243247-243266 None:intergenic 45.0%
AGTGAAACCTGACCTCTTCA+AGG - tig0018513:243297-243316 None:intergenic 45.0%
AAGCCCAGCCAGCAAATTTA+GGG - tig0018513:243379-243398 None:intergenic 45.0%
ACCTGTCTCTGTTGTCAATG+CGG + tig0018513:243550-243569 Msa1367600:intron 45.0%
CTGTTGTCAATGCGGAAATG+CGG + tig0018513:243558-243577 Msa1367600:intron 45.0%
AAAGTTGAAAGCGGCCAAAG+CGG - tig0018513:243827-243846 None:intergenic 45.0%
CGCGTGTCAAAAGTTGAAAG+CGG - tig0018513:243836-243855 None:intergenic 45.0%
! GTAGATTGTAGTGGGGAAGA+TGG + tig0018513:244150-244169 Msa1367600:CDS 45.0%
ATTCTTGTGTCATGGCAGCA+TGG - tig0018513:244456-244475 None:intergenic 45.0%
CTGCCATGACACAAGAATCA+CGG + tig0018513:244458-244477 Msa1367600:CDS 45.0%
AAGCCGTGATTCTTGTGTCA+TGG - tig0018513:244464-244483 None:intergenic 45.0%
! AACTGGGACACTTCTTTTGG+TGG - tig0018513:244514-244533 None:intergenic 45.0%
! GTCCCAGTTTATGGTTTGCA+CGG + tig0018513:244525-244544 Msa1367600:CDS 45.0%
GTCCGTGCAAACCATAAACT+GGG - tig0018513:244530-244549 None:intergenic 45.0%
TGTCCGTGCAAACCATAAAC+TGG - tig0018513:244531-244550 None:intergenic 45.0%
! AGTTTATGGTTTGCACGGAC+AGG + tig0018513:244530-244549 Msa1367600:CDS 45.0%
CAACTTGTAACAGAGCTTCG+CGG + tig0018513:244676-244695 Msa1367600:intron 45.0%
AACTTGTAACAGAGCTTCGC+GGG + tig0018513:244677-244696 Msa1367600:intron 45.0%
! GGGAATTGACTTCACTAGAG+TGG + tig0018513:244698-244717 Msa1367600:CDS 45.0%
ACACGCCGTACATATTCACT+TGG - tig0018513:244756-244775 None:intergenic 45.0%
AGTGAATATGTACGGCGTGT+TGG + tig0018513:244756-244775 Msa1367600:CDS 45.0%
TCCACTGCATGATGTACCTT+CGG + tig0018513:244884-244903 Msa1367600:CDS 45.0%
GAGCTGAAGAAGTAGGAAGT+TGG + tig0018513:244921-244940 Msa1367600:three_prime_UTR 45.0%
CTAACATGCATGGCAAAGGA+AGG + tig0018513:245005-245024 Msa1367600:three_prime_UTR 45.0%
!! GGTAGCACCGACAATATTCT+AGG + tig0018513:245037-245056 Msa1367600:three_prime_UTR 45.0%
TCGATGAAACGTGCATTGCT+AGG + tig0018513:245060-245079 Msa1367600:three_prime_UTR 45.0%
GCTCCTCATAGCAAAAGCAA+GGG + tig0018513:245082-245101 Msa1367600:three_prime_UTR 45.0%
!! TAGCCCTTGCTTTTGCTATG+AGG - tig0018513:245088-245107 None:intergenic 45.0%
TCTTTAGATGGTCTTTGGGC+AGG + tig0018513:245123-245142 Msa1367600:three_prime_UTR 45.0%
!!! ACTCGTGGTTTTATCGACGG+CGG - tig0018513:242245-242264 None:intergenic 50.0%
GAGTTGGATGGGGAGACAAT+AGG + tig0018513:242401-242420 Msa1367600:CDS 50.0%
! TAGGGTTAGCAGTCAATCGG+AGG + tig0018513:242420-242439 Msa1367600:CDS 50.0%
TGGAAGGGCGAGTTAAAGAG+AGG - tig0018513:242519-242538 None:intergenic 50.0%
AACTCGCCCTTCCAACATAC+AGG + tig0018513:242525-242544 Msa1367600:CDS 50.0%
GACATGGCCTGTATGTTGGA+AGG - tig0018513:242535-242554 None:intergenic 50.0%
ATTGCTGACCAGAGTGGTTC+TGG + tig0018513:242589-242608 Msa1367600:CDS 50.0%
CTGAGAAGCTAACTCAGCTG+TGG - tig0018513:242722-242741 None:intergenic 50.0%
! CACAGCTGAGTTAGCTTCTC+AGG + tig0018513:242720-242739 Msa1367600:CDS 50.0%
ATGAGGAAGAGAAAACGGCC+AGG - tig0018513:242877-242896 None:intergenic 50.0%
TTGCAGTGCTGTCTTGGATG+AGG + tig0018513:243084-243103 Msa1367600:intron 50.0%
TGGCGATGAGGACTTCGAAA+AGG + tig0018513:243120-243139 Msa1367600:CDS 50.0%
CAAGCCCAGCCAGCAAATTT+AGG - tig0018513:243380-243399 None:intergenic 50.0%
TATGGCAGTGGCAGTACAGT+TGG + tig0018513:243501-243520 Msa1367600:intron 50.0%
! TCCGCATTGACAACAGAGAC+AGG - tig0018513:243554-243573 None:intergenic 50.0%
ACTCAATAATTGGCGCGGTG+CGG + tig0018513:243594-243613 Msa1367600:intron 50.0%
AAAAACAGGACCACCGCACT+AGG - tig0018513:243888-243907 None:intergenic 50.0%
!!! TGGGGTATTTTGGTGTGTGC+AGG + tig0018513:243984-244003 Msa1367600:intron 50.0%
ACTGGTCACTGAATCCAGCA+TGG - tig0018513:244010-244029 None:intergenic 50.0%
TGTGTCATGGCAGCATGGAA+AGG - tig0018513:244451-244470 None:intergenic 50.0%
ACTTGTAACAGAGCTTCGCG+GGG + tig0018513:244678-244697 Msa1367600:intron 50.0%
!! TTGGAAAGGGTGCTCTCAAC+TGG + tig0018513:244958-244977 Msa1367600:three_prime_UTR 50.0%
!! TGGAAAGGGTGCTCTCAACT+GGG + tig0018513:244959-244978 Msa1367600:three_prime_UTR 50.0%
GGCTCCTCATAGCAAAAGCA+AGG + tig0018513:245081-245100 Msa1367600:three_prime_UTR 50.0%
AAAATGGCGGTGGTTGCGCA+AGG + tig0018513:242112-242131 Msa1367600:exon 55.0%
! GTGGTTGCGCAAGGTGTTTG+TGG + tig0018513:242121-242140 Msa1367600:CDS 55.0%
CGAAGTCCTCATCGCCAAAG+AGG - tig0018513:243117-243136 None:intergenic 55.0%
GTTCTCGCCTTGAAGAGGTC+AGG + tig0018513:243287-243306 Msa1367600:intron 55.0%
CTCAATAATTGGCGCGGTGC+GGG + tig0018513:243595-243614 Msa1367600:intron 55.0%
! GGGGCACTATTTCGGTAGTG+CGG + tig0018513:243621-243640 Msa1367600:intron 55.0%
!! ACTTTTGACACGCGCTGACG+CGG + tig0018513:243842-243861 Msa1367600:intron 55.0%
CGGAGTGGAGCGGAAAAAAC+AGG - tig0018513:243902-243921 None:intergenic 55.0%
AGCTGCTCTTCTGCAGCTTG+CGG + tig0018513:244212-244231 Msa1367600:CDS 55.0%
CGTGTTGGAAGAACAGCCAG+AGG + tig0018513:244771-244790 Msa1367600:CDS 55.0%
!! AAGAACAGCCAGAGGTGCCA+GGG + tig0018513:244779-244798 Msa1367600:CDS 55.0%
! GCCGAAGGTACATCATGCAG+TGG - tig0018513:244888-244907 None:intergenic 55.0%
!! TGCAGGAGTGTCATTTCCGG+TGG - tig0018513:245201-245220 None:intergenic 55.0%
GTCAATGCGGAAATGCGGCG+CGG + tig0018513:243563-243582 Msa1367600:intron 60.0%
TCCGCTCCACTCCGCTATAG+CGG + tig0018513:243908-243927 Msa1367600:intron 60.0%
! ACCGCTATAGCGGAGTGGAG+CGG - tig0018513:243912-243931 None:intergenic 60.0%
AGCCACGTCGACCGCTATAG+CGG - tig0018513:243922-243941 None:intergenic 60.0%
TTGGTGTGTGCAGGCCATGC+TGG + tig0018513:243993-244012 Msa1367600:intron 60.0%
!! GAAGAACAGCCAGAGGTGCC+AGG + tig0018513:244778-244797 Msa1367600:CDS 60.0%
!! AGAACAGCCAGAGGTGCCAG+GGG + tig0018513:244780-244799 Msa1367600:CDS 60.0%
AAATGCCTTGCCCTGTCCCC+TGG - tig0018513:244799-244818 None:intergenic 60.0%
TAATTGGCGCGGTGCGGGAG+CGG + tig0018513:243600-243619 Msa1367600:intron 65.0%
! GCGGGAGCGGGGCACTATTT+CGG + tig0018513:243613-243632 Msa1367600:intron 65.0%
! CGTCGACCGCTATAGCGGAG+TGG - tig0018513:243917-243936 None:intergenic 65.0%
CTCCGCTATAGCGGTCGACG+TGG + tig0018513:243917-243936 Msa1367600:intron 65.0%
AATTGGCGCGGTGCGGGAGC+GGG + tig0018513:243601-243620 Msa1367600:intron 70.0%
ACCACCGCACTAGGCCGAGC+CGG - tig0018513:243879-243898 None:intergenic 70.0%
!! AGCCAGAGGTGCCAGGGGAC+AGG + tig0018513:244785-244804 Msa1367600:CDS 70.0%
!! GCCAGAGGTGCCAGGGGACA+GGG + tig0018513:244786-244805 Msa1367600:CDS 70.0%
AGGTGCCAGGGGACAGGGCA+AGG + tig0018513:244791-244810 Msa1367600:CDS 70.0%
ATTGGCGCGGTGCGGGAGCG+GGG + tig0018513:243602-243621 Msa1367600:intron 75.0%
TGACGCGGCCTGAGACGCGC+CGG + tig0018513:243857-243876 Msa1367600:intron 75.0%
GCCCTGTCCCCTGGCACCTC+TGG - tig0018513:244790-244809 None:intergenic 75.0%
!!! CGGCCTGAGACGCGCCGGCT+CGG + tig0018513:243862-243881 Msa1367600:intron 80.0%
! AGGCCGAGCCGGCGCGTCTC+AGG - tig0018513:243868-243887 None:intergenic 80.0%
!!! CGCGCCGGCTCGGCCTAGTG+CGG + tig0018513:243872-243891 Msa1367600:intron 80.0%
!!! GCCGGCTCGGCCTAGTGCGG+TGG + tig0018513:243875-243894 Msa1367600:intron 80.0%
Chromosome Type Strat End Strand Name
tig0018513 gene 242047 245333 242047 ID=Msa1367600;Name=Msa1367600
tig0018513 mRNA 242047 245333 242047 ID=Msa1367600-mRNA-1;Parent=Msa1367600;Name=Msa1367600-mRNA-1;_AED=0.08;_eAED=0.08;_QI=68|1|1|1|1|1|5|413|523
tig0018513 exon 242047 242932 242047 ID=Msa1367600-mRNA-1:exon:15543;Parent=Msa1367600-mRNA-1
tig0018513 exon 243090 243303 243090 ID=Msa1367600-mRNA-1:exon:15544;Parent=Msa1367600-mRNA-1
tig0018513 exon 244144 244275 244144 ID=Msa1367600-mRNA-1:exon:15545;Parent=Msa1367600-mRNA-1
tig0018513 exon 244376 244551 244376 ID=Msa1367600-mRNA-1:exon:15546;Parent=Msa1367600-mRNA-1
tig0018513 exon 244689 245333 244689 ID=Msa1367600-mRNA-1:exon:15547;Parent=Msa1367600-mRNA-1
tig0018513 five_prime_UTR 242047 242114 242047 ID=Msa1367600-mRNA-1:five_prime_utr;Parent=Msa1367600-mRNA-1
tig0018513 CDS 242115 242932 242115 ID=Msa1367600-mRNA-1:cds;Parent=Msa1367600-mRNA-1
tig0018513 CDS 243090 243303 243090 ID=Msa1367600-mRNA-1:cds;Parent=Msa1367600-mRNA-1
tig0018513 CDS 244144 244275 244144 ID=Msa1367600-mRNA-1:cds;Parent=Msa1367600-mRNA-1
tig0018513 CDS 244376 244551 244376 ID=Msa1367600-mRNA-1:cds;Parent=Msa1367600-mRNA-1
tig0018513 CDS 244689 244920 244689 ID=Msa1367600-mRNA-1:cds;Parent=Msa1367600-mRNA-1
tig0018513 three_prime_UTR 244921 245333 244921 ID=Msa1367600-mRNA-1:three_prime_utr;Parent=Msa1367600-mRNA-1
Gene Sequence

>Msa1367600

ATGGCGGTGGTTGCGCAAGGTGTTTGTGGTAAAGCGTTGCTGTTTAGCATCGGAGTTGGAGTGAGACCCAGTAAACACTCTGTCTTCTTCTTCGTTTCTAATTCAAAATCCAATTCAAATTCAAAATCCGCCGTCGATAAAACCACGAGTTTCGGAAGACTAAAAGTTGAGAAAGTGAATGCTCTCATCCACAGAACCAAGCAAAATACCACAAAACGCAAACAACTACAACTAGAAGATGAAGATGAAGACAACAATTCTGCAACTGCAACTGCAACTCATTCGAGAGTTGGATGGGGAGACAATAGGGTTAGCAGTCAATCGGAGGACACCAACTTTTTCAGTCTAAAATCATTTAAAGACATTGGATGCGCCGATTTCATGATTGAATCTCTCCATAACCTCTCTTTAACTCGCCCTTCCAACATACAGGCCATGTCATTTGCTCCTGTTATTGCCGGAAAGTCTTGTATAATTGCTGACCAGAGTGGTTCTGGAAAGACATTAGCTTATCTTGTACCAATCATTCAACGTCTCAGACAACAAGAACTACAAGGACTTCATAAATCTTCTTCACGATCTCCTACTCTTGTTATACTCGCACCCACAGCTGAGTTAGCTTCTCAGGTCTTCCATAATTGTCGTTCAATGTCTAAATCTGGCAAGGTTCCATTCAAATCTATGCTTGTCACTGGTGGCTTCCGACAAAAAACTCAACTCGACACTTTAAACCAGGGTGTTGATGTCTTGATAGCTACACCTGGCCGTTTTCTCTTCCTCATCAACCAAGGCTTTTTGCACTTAACTAATCTAACATGTGCTGTCTTGGATGAGGTTGATATCCTCTTTGGCGATGAGGACTTCGAAAAGGCTCTTCAATGCTTGATTAGTTCTTCACCGGTGGACACACAATATTTATTTGTAACTGCTACTTTACCAAAAAATGTTTACAGCAAACTGGTTGAAGTTTTTCCTGATTGTGAAATGGTCATGGGACCTAGTATGCATCGAATAAGTTCTCGCCTTGAAGAGATAATAGTAGATTGTAGTGGGGAAGATGGACAAGAAAAAACTCTCGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGCAGCTTGCGGAGAAGAATCGCGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCATTAAACCGTTTTGATAGAAAGGGAATTCGCATGCAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCACGGCTTACTAGTATGAAGGAGTTTACACGTTCTCCACCAAAAGAAGTGTCCCAGTTTATGGTTTGCACGGACAGAGCTTCGCGGGGAATTGACTTCACTAGAGTGGATCATGTAATACTTTTTGACTACCCACGTGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGGTGCCAGGGGACAGGGCAAGGCATTTATCTTTGTTGTTGGCAAGCAAGTATCCCTTGCACAAAAAGTAATGGAAAGAAATCGGAAGGGTCATCCACTGCATGATGTACCTTCGGCTTATGAGTATTGA
Protein sequence

>Msa1367600

MAVVAQGVCGKALLFSIGVGVRPSKHSVFFFVSNSKSNSNSKSAVDKTTSFGRLKVEKVNALIHRTKQNTTKRKQLQLEDEDEDNNSATATATHSRVGWGDNRVSSQSEDTNFFSLKSFKDIGCADFMIESLHNLSLTRPSNIQAMSFAPVIAGKSCIIADQSGSGKTLAYLVPIIQRLRQQELQGLHKSSSRSPTLVILAPTAELASQVFHNCRSMSKSGKVPFKSMLVTGGFRQKTQLDTLNQGVDVLIATPGRFLFLINQGFLHLTNLTCAVLDEVDILFGDEDFEKALQCLISSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMVMGPSMHRISSRLEEIIVDCSGEDGQEKTLDTAFLNKKAALLQLAEKNRVPRTIVFCNKIETCRKVENALNRFDRKGIRMQVLPFHAAMTQESRLTSMKEFTRSPPKEVSQFMVCTDRASRGIDFTRVDHVILFDYPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLAQKVMERNRKGHPLHDVPSAYEY*