AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259220 MtrunA17_Chr2g0325651 86.563 387 39 1 1 374 2 388 0.0 636
Msa0259220 MtrunA17_Chr2g0325651 42.294 279 128 9 227 502 140 388 2.73e-32 129
Msa0259220 MtrunA17_Chr2g0325651 39.583 288 124 7 328 614 150 388 3.99e-29 119
Msa0259220 MtrunA17_Chr2g0325651 38.245 319 138 11 244 558 125 388 7.88e-26 110
Msa0259220 MtrunA17_Chr2g0325651 37.662 231 92 2 441 619 138 368 6.14e-23 101
Msa0259220 MtrunA17_Chr5g0434741 75.082 305 74 2 1 304 1 304 1.70e-146 426
Msa0259220 MtrunA17_Chr5g0434741 37.500 184 102 4 443 618 126 304 9.02e-14 72.4
Msa0259220 MtrunA17_Chr5g0434741 36.232 207 92 5 328 533 136 303 1.26e-13 72.0
Msa0259220 MtrunA17_Chr2g0325261 72.575 299 81 1 1 299 2 299 1.60e-139 408
Msa0259220 MtrunA17_Chr2g0325261 57.143 84 36 0 481 564 223 306 6.60e-16 79.0
Msa0259220 MtrunA17_Chr2g0325261 39.459 185 99 4 443 619 126 305 1.01e-13 72.4
Msa0259220 MtrunA17_Chr2g0325261 32.692 260 97 8 220 452 98 306 4.11e-12 67.8
Msa0259220 MtrunA17_Chr2g0325341 72.575 299 81 1 1 299 2 299 1.60e-139 408
Msa0259220 MtrunA17_Chr2g0325341 57.143 84 36 0 481 564 223 306 6.60e-16 79.0
Msa0259220 MtrunA17_Chr2g0325341 39.459 185 99 4 443 619 126 305 1.01e-13 72.4
Msa0259220 MtrunA17_Chr2g0325341 32.692 260 97 8 220 452 98 306 4.11e-12 67.8
Msa0259220 MtrunA17_Chr2g0325361 46.988 664 238 11 52 619 42 687 2.33e-135 422
Msa0259220 MtrunA17_Chr2g0325361 52.564 468 143 6 222 619 334 792 1.62e-104 340
Msa0259220 MtrunA17_Chr2g0325361 49.565 345 141 4 222 549 478 806 4.14e-58 211
Msa0259220 MtrunA17_Chr2g0325361 39.752 322 179 5 306 622 151 462 1.89e-34 140
Msa0259220 MtrunA17_Chr2g0325861 44.886 704 226 12 1 619 2 628 1.98e-132 409
Msa0259220 MtrunA17_Chr2g0325861 43.726 263 133 5 209 467 407 658 2.18e-37 149
Msa0259220 MtrunA17_Chr2g0325861 34.465 383 198 7 253 621 135 478 3.78e-31 129
Msa0259220 MtrunA17_Chr2g0325861 36.723 177 104 2 222 390 505 681 4.55e-16 82.0
Msa0259220 MtrunA17_Chr2g0325761 41.654 665 279 10 1 617 1 604 6.62e-112 350
Msa0259220 MtrunA17_Chr2g0325761 39.857 419 204 8 237 620 174 579 1.34e-48 180
Msa0259220 MtrunA17_Chr2g0325761 41.514 383 184 10 248 619 155 508 1.12e-44 169
Msa0259220 MtrunA17_Chr2g0325691 41.643 694 321 13 1 619 1 685 3.93e-110 347
Msa0259220 MtrunA17_Chr2g0325691 45.556 360 160 4 222 558 376 722 6.31e-54 196
Msa0259220 MtrunA17_Chr2g0325691 33.494 415 169 10 124 439 323 729 6.00e-22 100
Msa0259220 MtrunA17_Chr2g0325281 42.994 628 279 16 14 612 5 582 2.25e-102 323
Msa0259220 MtrunA17_Chr2g0325281 43.350 203 94 1 437 618 246 448 2.26e-28 120
Msa0259220 MtrunA17_Chr2g0325281 46.528 144 73 1 478 621 228 367 1.72e-21 99.0
Msa0259220 MtrunA17_Chr2g0325281 42.667 150 76 2 216 362 444 586 1.04e-15 80.5
Msa0259220 MtrunA17_Chr2g0325231 39.148 728 291 15 1 623 2 682 3.56e-102 330
Msa0259220 MtrunA17_Chr2g0325231 35.398 339 116 8 222 459 374 710 2.28e-28 121
Msa0259220 MtrunA17_Chr2g0325661 38.344 652 228 11 1 534 1 596 7.69e-97 316
Msa0259220 MtrunA17_Chr2g0325661 38.866 476 236 12 186 619 121 583 2.04e-50 187
Msa0259220 MtrunA17_Chr2g0325321 41.704 669 233 15 14 614 5 584 4.64e-96 311
Msa0259220 MtrunA17_Chr2g0325321 31.198 484 191 14 232 619 82 519 4.03e-25 110
Msa0259220 MtrunA17_Chr2g0325321 34.202 307 127 8 94 388 374 617 1.59e-13 73.9
Msa0259220 MtrunA17_Chr2g0325641 52.478 343 109 7 265 590 2 307 1.05e-77 250
Msa0259220 MtrunA17_Chr2g0325641 54.741 232 96 2 396 619 1 231 7.54e-56 192
Msa0259220 MtrunA17_Chr2g0325641 43.791 306 111 5 319 565 7 310 5.77e-46 165
Msa0259220 MtrunA17_Chr2g0325641 40.076 262 117 3 212 435 47 306 6.68e-33 129
Msa0259220 MtrunA17_Chr2g0325221 37.368 661 251 20 1 567 1 592 4.85e-77 259
Msa0259220 MtrunA17_Chr2g0325221 42.045 264 133 3 369 618 316 573 8.74e-34 137
Msa0259220 MtrunA17_Chr2g0325221 43.885 139 64 1 492 616 311 449 1.77e-16 83.2
Msa0259220 MtrunA17_Chr2g0325721 39.888 534 182 13 1 428 1 501 2.78e-76 251
Msa0259220 MtrunA17_Chr2g0325721 35.190 395 209 10 234 610 136 501 3.94e-31 127
Msa0259220 MtrunA17_Chr6g0471251 41.980 505 195 10 1 438 2 475 3.68e-72 247
Msa0259220 MtrunA17_Chr6g0471251 42.199 282 122 5 346 619 226 474 9.25e-27 115
Msa0259220 MtrunA17_Chr6g0471251 31.378 392 203 11 196 545 130 497 8.87e-19 90.9
Msa0259220 MtrunA17_Chr2g0325711 38.339 566 241 9 42 565 57 556 4.22e-71 245
Msa0259220 MtrunA17_Chr2g0325711 36.313 358 183 8 306 623 178 530 2.28e-33 136
Msa0259220 MtrunA17_Chr5g0434751 54.244 271 88 4 327 561 1 271 7.88e-59 199
Msa0259220 MtrunA17_Chr5g0434751 44.978 229 105 1 410 617 1 229 2.46e-33 129
Msa0259220 MtrunA17_Chr5g0434751 53.571 168 78 0 452 619 1 168 1.04e-31 125
Msa0259220 MtrunA17_Chr5g0434751 42.912 261 126 2 380 619 1 259 9.61e-30 119
Msa0259220 MtrunA17_Chr5g0434751 40.928 237 107 4 220 432 41 268 1.67e-27 112
Msa0259220 MtrunA17_Chr5g0434751 39.700 267 132 3 222 459 1 267 1.43e-25 107
Msa0259220 MtrunA17_Chr2g0325811 35.971 556 280 16 35 565 68 572 1.84e-54 199
Msa0259220 MtrunA17_Chr2g0325811 40.909 242 133 2 391 622 304 545 1.38e-30 127
Msa0259220 MtrunA17_Chr2g0325811 44.167 240 128 2 379 618 322 555 1.09e-29 125
Msa0259220 MtrunA17_Chr2g0325811 32.979 188 95 2 220 383 419 599 1.67e-12 70.9
Msa0259220 MtrunA17_Chr2g0280141 33.010 618 264 12 32 595 48 569 8.76e-52 191
Msa0259220 MtrunA17_Chr2g0280141 37.760 384 223 6 248 619 96 475 2.44e-39 154
Msa0259220 MtrunA17_Chr2g0325351 37.475 491 194 13 1 459 2 411 1.64e-51 189
Msa0259220 MtrunA17_Chr2g0325351 38.225 293 140 8 321 603 154 415 1.73e-24 108
Msa0259220 MtrunA17_Chr2g0325351 39.231 260 128 7 372 619 148 389 3.22e-23 104
Msa0259220 MtrunA17_Chr2g0325351 33.856 319 161 10 248 561 142 415 1.18e-19 93.2
Msa0259220 MtrunA17_Chr7g0235901 41.040 346 153 9 61 391 1 310 9.04e-46 164
Msa0259220 MtrunA17_Chr7g0235901 49.057 265 86 7 372 590 50 311 1.09e-44 161
Msa0259220 MtrunA17_Chr5g0416271 35.903 454 159 13 1 440 1 336 2.64e-45 167
Msa0259220 MtrunA17_Chr5g0416271 52.830 159 75 0 415 573 164 322 2.76e-34 136
Msa0259220 MtrunA17_Chr5g0416271 40.164 244 133 5 372 603 82 324 1.44e-28 119
Msa0259220 MtrunA17_Chr5g0416271 45.000 160 73 3 465 617 145 296 2.41e-21 97.8
Msa0259220 MtrunA17_Chr2g0325781 37.568 370 137 14 1 345 1 301 7.81e-45 161
Msa0259220 MtrunA17_Chr2g0325781 45.930 172 68 4 367 513 131 302 3.71e-23 100
Msa0259220 MtrunA17_Chr2g0333341 35.088 456 176 10 1 345 1 447 3.32e-44 167
Msa0259220 MtrunA17_Chr2g0333341 36.473 414 133 12 44 402 111 449 1.20e-33 136
Msa0259220 MtrunA17_Chr2g0333341 42.424 165 90 2 420 584 290 449 4.51e-19 91.3
Msa0259220 MtrunA17_Chr2g0333341 44.615 130 70 2 483 612 322 449 1.27e-16 83.6
Msa0259220 MtrunA17_Chr2g0333341 34.109 258 141 8 297 542 209 449 1.16e-12 70.9
Msa0259220 MtrunA17_Chr2g0325701 36.771 446 209 12 1 414 1 405 1.26e-42 162
Msa0259220 MtrunA17_Chr2g0325701 34.727 311 168 6 307 615 146 423 6.41e-28 118
Msa0259220 MtrunA17_Chr2g0325701 36.842 247 129 4 397 616 165 411 4.81e-25 109
Msa0259220 MtrunA17_Chr2g0325701 36.224 196 98 4 453 621 151 346 1.27e-11 67.8
Msa0259220 MtrunA17_Chr2g0325621 37.656 401 170 9 12 353 8 387 5.85e-42 161
Msa0259220 MtrunA17_Chr2g0325621 33.138 341 160 7 253 590 112 387 1.91e-17 86.3
Msa0259220 MtrunA17_Chr2g0325621 35.874 223 128 5 410 619 154 374 6.78e-17 84.7
Msa0259220 MtrunA17_Chr2g0325741 45.267 243 102 8 42 275 82 302 1.07e-38 145
Msa0259220 MtrunA17_Chr2g0325611 40.074 272 105 6 139 391 77 309 1.90e-29 123
Msa0259220 MtrunA17_Chr2g0325611 41.748 206 107 4 418 616 122 321 9.01e-24 105
Msa0259220 MtrunA17_Chr2g0325611 34.940 249 120 6 368 590 117 349 3.37e-17 85.5
Msa0259220 MtrunA17_Chr2g0325611 46.575 146 69 2 485 623 144 287 1.42e-16 83.2
Msa0259220 MtrunA17_Chr2g0325611 30.606 330 141 12 50 356 49 313 2.09e-11 67.0
Msa0259220 MtrunA17_Chr2g0325241 41.709 199 113 1 420 615 123 321 7.39e-27 113
Msa0259220 MtrunA17_Chr2g0325241 41.429 210 100 4 378 575 125 323 5.21e-25 108
Msa0259220 MtrunA17_Chr2g0325241 43.017 179 85 2 459 620 120 298 6.88e-25 107
Msa0259220 MtrunA17_Chr2g0325241 36.170 235 107 5 272 493 121 325 2.07e-16 82.0
Msa0259220 MtrunA17_Chr2g0325241 35.169 236 112 5 359 587 120 321 1.68e-15 79.3
Msa0259220 MtrunA17_Chr2g0325241 34.101 217 100 4 216 396 105 314 1.81e-14 75.9
Msa0259220 MtrunA17_Chr2g0325201 42.614 176 79 2 165 339 74 228 1.39e-22 97.1
Msa0259220 MtrunA17_Chr2g0325201 36.316 190 90 5 417 576 40 228 1.15e-13 70.9
Msa0259220 MtrunA17_Chr2g0325751 50.000 116 51 1 504 619 3 111 1.17e-19 86.3
Msa0259220 MtrunA17_Chr2g0325751 46.032 126 61 1 481 606 8 126 1.35e-18 83.2
Msa0259220 MtrunA17_Chr2g0325751 44.800 125 62 1 410 534 7 124 1.32e-17 80.5
Msa0259220 MtrunA17_Chr2g0325751 44.056 143 59 2 420 562 3 124 8.91e-17 78.2
Msa0259220 MtrunA17_Chr2g0325751 44.262 122 59 1 375 496 2 114 4.60e-16 75.9
Msa0259220 MtrunA17_Chr2g0325751 40.000 120 65 1 447 566 2 114 1.57e-13 68.6
Msa0259220 MtrunA17_Chr2g0325751 38.235 136 70 2 217 352 2 123 9.33e-11 60.8
Msa0259220 MtrunA17_Chr2g0325211 37.356 174 91 2 419 592 2 157 3.22e-17 80.1
Msa0259220 MtrunA17_Chr2g0325211 40.506 158 90 1 461 618 2 155 5.23e-16 76.6
Msa0259220 MtrunA17_Chr2g0325211 33.333 174 80 4 376 521 3 168 2.98e-11 63.2
Msa0259220 MtrunA17_Chr2g0325791 40.120 167 74 3 417 582 15 156 3.70e-17 83.2
Msa0259220 MtrunA17_Chr2g0325791 41.463 164 86 3 406 560 14 176 1.53e-16 81.3
Msa0259220 MtrunA17_Chr2g0325791 46.032 126 58 1 485 610 41 156 1.32e-14 75.5
Msa0259220 MtrunA17_Chr2g0325791 39.394 165 66 4 222 383 36 169 1.42e-12 69.3
Msa0259220 MtrunA17_Chr2g0325791 38.710 155 79 3 381 520 24 177 4.97e-12 67.4
Msa0259220 MtrunA17_Chr2g0332961 32.482 274 147 7 42 314 2 238 2.12e-16 81.3
Msa0259220 MtrunA17_Chr2g0332961 40.404 198 91 6 357 533 37 228 1.98e-14 75.1
Msa0259220 MtrunA17_Chr2g0325801 53.247 77 33 1 79 152 50 126 6.11e-16 74.7
Msa0259220 MtrunA17_Chr2g0325731 67.241 58 19 0 452 509 1 58 3.96e-15 70.5
Msa0259220 MtrunA17_Chr2g0325731 60.345 58 23 0 522 579 1 58 9.70e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 104 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCAATATCTTTCTTTA+TGG 0.077701 2_2:+56103385 None:intergenic
GCACTTTGAGGAACGGTTTA+AGG 0.168819 2_2:-56102988 Msa0259220:CDS
GCAATTGAAAGGACAATTTA+AGG 0.205523 2_2:-56102180 Msa0259220:CDS
GATGCAACAAACAAATTAAT+TGG 0.207790 2_2:-56103200 Msa0259220:CDS
GCCTTCAAGTTGATTCTCTT+TGG 0.237766 2_2:+56102767 None:intergenic
ATTGAAGGAGCATGAATTAA+AGG 0.284018 2_2:-56102742 Msa0259220:CDS
TGCATCAAGATCTTTCTCTT+TGG 0.298026 2_2:+56103217 None:intergenic
TAGATTCCAGTTCCTTCATT+TGG 0.303740 2_2:+56102042 None:intergenic
TGGACTCAAGCTCCTTCATT+TGG 0.314622 2_2:+56102787 None:intergenic
TTGACTCAAACTCCTTCATT+TGG 0.322454 2_2:+56102336 None:intergenic
CTTCGTCTAGTATGTCTAAA+AGG 0.323022 2_2:-56103523 Msa0259220:CDS
TTAATTCATGCTCCTTCAAT+TGG 0.328441 2_2:+56102745 None:intergenic
TTGATAGAAAATCCATCATT+TGG 0.338236 2_2:+56102378 None:intergenic
TCAATACCTGCTGCATCATT+TGG 0.344710 2_2:+56102829 None:intergenic
AGTCGTTTAAGAAATGTAAA+AGG 0.361598 2_2:-56103439 Msa0259220:CDS
GGCAATTGAAAGGACAAGTT+AGG 0.363535 2_2:-56101971 Msa0259220:CDS
TCATCAAACAGCCTCTTAAC+TGG 0.364820 2_2:+56103626 None:intergenic
TGCATGTACCGTGGAACTTC+AGG 0.384841 2_2:-56103240 Msa0259220:CDS
CTGCTAGACTTCCAGTTAAG+AGG 0.392854 2_2:-56103637 Msa0259220:CDS
GAATTTGAAGGCCAAGGAAC+TGG 0.393650 2_2:-56101843 Msa0259220:CDS
GGAATTTGAAGGTGAATTGA+AGG 0.408101 2_2:-56102474 Msa0259220:CDS
TCAAAGTCTTGACAAGAAAC+AGG 0.417784 2_2:+56103695 None:intergenic
GAATCTAAGAAGAAGCATTT+CGG 0.423186 2_2:-56102696 Msa0259220:CDS
TGAAGGCCAAATGAAGGAAC+TGG 0.424379 2_2:-56102048 Msa0259220:CDS
AAAAGTTGAAGTGAAGAAAG+AGG 0.426071 2_2:-56103291 Msa0259220:CDS
TTGATTCATGCTCCTTCGCT+CGG 0.428334 2_2:+56102084 None:intergenic
GGAATTTGAATGCCAAATGA+TGG 0.430842 2_2:-56102390 Msa0259220:CDS
TCTGATACGCCAACAATTTG+TGG 0.440814 2_2:-56103746 Msa0259220:CDS
TTGATTCATGCTCCTTCACT+CGG 0.444211 2_2:+56101874 None:intergenic
TTGATTCATGCTCCTTCACT+CGG 0.444211 2_2:+56102294 None:intergenic
TGAGGAACGGTTTAAGGAGC+TGG 0.447160 2_2:-56102982 Msa0259220:CDS
GTCTAGTATGTCTAAAAGGC+AGG 0.451554 2_2:-56103519 Msa0259220:CDS
TGAAGATCAAAGGAAGGAAC+TGG 0.456281 2_2:-56102258 Msa0259220:CDS
GTCAAACGAGAAGCACTTTG+AGG 0.466153 2_2:-56103000 Msa0259220:CDS
TCAAAAGATAACAAACTTGA+AGG 0.467231 2_2:-56102443 Msa0259220:CDS
GCAATTTAAAGACCAGGTTA+AGG 0.467484 2_2:-56103072 Msa0259220:CDS
TCTAAAGAGAAGCAATTTGA+TGG 0.470278 2_2:-56101939 Msa0259220:CDS
TCTAAAGAGAAGCAATTTGT+TGG 0.477580 2_2:-56102149 Msa0259220:CDS
AGAGAGAATTTGAAGATCAA+AGG 0.479440 2_2:-56102268 Msa0259220:CDS
TCCAAAGAGAATCAACTTGA+AGG 0.480104 2_2:-56102768 Msa0259220:CDS
CTCTTTGGCCTGAAGTTCCA+CGG 0.482562 2_2:+56103232 None:intergenic
GAAGGACGAGCAATGGAGCT+AGG 0.495539 2_2:-56102897 Msa0259220:CDS
TCACCACCACCACAAATTGT+TGG 0.495698 2_2:+56103737 None:intergenic
AGAGATGCAACATGAAGGTT+CGG 0.496357 2_2:-56102868 Msa0259220:CDS
TTGACTCAAGTTCCTTAACC+TGG 0.496862 2_2:+56103060 None:intergenic
AGAATTTGAAGGCCAAATGA+AGG 0.500127 2_2:-56102054 Msa0259220:CDS
GAGAGAGAATTTGAAGGCCA+AGG 0.505466 2_2:-56101849 Msa0259220:CDS
TCAAAAGAGAGAGAATTTGA+AGG 0.507245 2_2:-56101855 Msa0259220:CDS
TCAAAAGAGAGAGAATTTGA+AGG 0.507245 2_2:-56102065 Msa0259220:CDS
GGAACTTGAAGGACGAGCAA+TGG 0.514924 2_2:-56102904 Msa0259220:CDS
TGTGAAAGAATTTGAATCAA+AGG 0.523232 2_2:-56102931 Msa0259220:CDS
TCAACTTGAAGGCCAATTGA+AGG 0.523690 2_2:-56102757 Msa0259220:CDS
GGAGCATGAATTAAAGGAGA+AGG 0.524213 2_2:-56102736 Msa0259220:CDS
GGAGTTTGAATCAAAAGAGA+AGG 0.529370 2_2:-56102411 Msa0259220:CDS
TTAAAGGAGAAGGAATTTGA+AGG 0.539153 2_2:-56102726 Msa0259220:CDS
CAAACTTGAAGGCAAAGTAA+AGG 0.542147 2_2:-56102432 Msa0259220:CDS
AGAATTTGAATCAAAGGAGA+AGG 0.544260 2_2:-56102925 Msa0259220:CDS
GCAATTGAAAGGACAAGTTA+GGG 0.544310 2_2:-56101970 Msa0259220:CDS
GAATAGCTGTGCTCTAATGA+AGG 0.545828 2_2:-56103114 Msa0259220:CDS
TCAAAGGAGAAGGAACTTGA+AGG 0.549197 2_2:-56102915 Msa0259220:CDS
AGAATTTGAAGATCAAAGGA+AGG 0.550611 2_2:-56102264 Msa0259220:CDS
TCATTGCCGTGATCATCATA+TGG 0.558066 2_2:+56103560 None:intergenic
GCATTTCGAAAGCCAAATGA+AGG 0.558177 2_2:-56102348 Msa0259220:CDS
GCAATTTGTTGGCCGTGTGA+AGG 0.559960 2_2:-56102138 Msa0259220:CDS
AAGAGCTCAAAACAAAAGAA+AGG 0.562229 2_2:-56101992 Msa0259220:CDS
GCAATTTGATGGCCGTGTGA+AGG 0.565210 2_2:-56101928 Msa0259220:CDS
GCTGATGAATGAACTTGCAT+TGG 0.569923 2_2:-56103468 Msa0259220:CDS
GCAGAAGCAATTTAAAGACC+AGG 0.570414 2_2:-56103078 Msa0259220:CDS
GCATTGTGAAAGCCAAATGA+AGG 0.570742 2_2:-56102799 Msa0259220:CDS
GAAGCATTTCGGAAGCATGA+TGG 0.571608 2_2:-56102685 Msa0259220:CDS
AAGGACGAGCAATGGAGCTA+GGG 0.574030 2_2:-56102896 Msa0259220:CDS
GCAACATGAAAGCCGAGCGA+AGG 0.576142 2_2:-56102096 Msa0259220:CDS
TGGTGATGATAATGTGAAGA+AGG 0.576558 2_2:-56103720 Msa0259220:CDS
ACTGGAATCTAAAACGAAGC+AGG 0.577734 2_2:-56102030 Msa0259220:CDS
GCAACATGAAAGCCGAGTGA+AGG 0.578492 2_2:-56101886 Msa0259220:CDS
ACAAAAGAAAGGCAATTGAA+AGG 0.581900 2_2:-56101981 Msa0259220:CDS
AGTGAAGAAAGAGGAACTGA+AGG 0.582287 2_2:-56103282 Msa0259220:CDS
GCAACATGAAGGTTCGGTGA+AGG 0.584082 2_2:-56102862 Msa0259220:CDS
ACGAGAAGCACTTTGAGGAA+CGG 0.585238 2_2:-56102995 Msa0259220:CDS
ACAAAAGAGAGGCAATTGAA+AGG 0.586294 2_2:-56102191 Msa0259220:CDS
GCAGTGTGAAAGACGAGTGG+AGG 0.593274 2_2:-56103030 Msa0259220:CDS
ACGCCAACAATTTGTGGTGG+TGG 0.593868 2_2:-56103740 Msa0259220:CDS
TGAATGCCAAATGATGCAGC+AGG 0.601329 2_2:-56102835 Msa0259220:CDS
TCAACTTGAAGGCCGCGTGA+AGG 0.602903 2_2:-56102516 Msa0259220:intron
ACAAAAGAGATGCAACATGA+AGG 0.603273 2_2:-56102873 Msa0259220:CDS
TCAACATGAAAGCCGAGTGA+AGG 0.603798 2_2:-56102306 Msa0259220:CDS
TTGACTCAAACTCCTTCACA+CGG 0.618553 2_2:+56101916 None:intergenic
TTGACTCAAACTCCTTCACA+CGG 0.618553 2_2:+56102126 None:intergenic
TTGATTCAAATTCTTTCACA+CGG 0.620040 2_2:+56102934 None:intergenic
AGGAGCTCAAATCAAGAATG+AGG 0.620661 2_2:-56102662 Msa0259220:CDS
GCGCAACCATATGATGATCA+CGG 0.621089 2_2:-56103566 Msa0259220:CDS
CAGTTGAATAATGGATGTCG+AGG 0.622405 2_2:-56103771 None:intergenic
GATCACGGCAATGACGCAGA+TGG 0.626486 2_2:-56103551 Msa0259220:CDS
GAAGCAGTGTGAAAGACGAG+TGG 0.629119 2_2:-56103033 Msa0259220:CDS
TCTAGTATGTCTAAAAGGCA+GGG 0.633650 2_2:-56103518 Msa0259220:CDS
GTCATTGAAAGAACAAGTTG+AGG 0.638813 2_2:-56102640 Msa0259220:CDS
GCATTTCGGAAGCATGATGG+AGG 0.647166 2_2:-56102682 Msa0259220:CDS
TTGATTCAAATTCCTTCACG+CGG 0.649009 2_2:+56102504 None:intergenic
AGGAGCTCAAAACAAAAGAG+AGG 0.668553 2_2:-56102202 Msa0259220:CDS
TGCAAGTTCATTCATCAGCG+AGG 0.690629 2_2:+56103472 None:intergenic
GAAGGAATTTGAAGGCCGCG+TGG 0.695794 2_2:-56102718 Msa0259220:CDS
GAAGCAGGTTGAAAGCCAAG+TGG 0.696461 2_2:-56102015 Msa0259220:CDS
GATACGCCAACAATTTGTGG+TGG 0.704134 2_2:-56103743 Msa0259220:CDS
GCTTCTTCTTAGATTCCACG+CGG 0.781721 2_2:+56102703 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTCGTTTAAGAAATGTAAA+AGG - chr2_2:56102158-56102177 Msa0259220:CDS 25.0%
! CTCTTCAATATCTTTCTTTA+TGG + chr2_2:56102215-56102234 None:intergenic 25.0%
! GATGCAACAAACAAATTAAT+TGG - chr2_2:56102397-56102416 Msa0259220:CDS 25.0%
! TTGATTCAAATTCTTTCACA+CGG + chr2_2:56102666-56102685 None:intergenic 25.0%
! TGTGAAAGAATTTGAATCAA+AGG - chr2_2:56102666-56102685 Msa0259220:CDS 25.0%
! GGAATTTGAATCAAAAAAGA+AGG - chr2_2:56103102-56103121 Msa0259220:CDS 25.0%
! TCAAAAAAGAAGGAATTTGA+AGG - chr2_2:56103112-56103131 Msa0259220:CDS 25.0%
! TCAAAAGATAACAAACTTGA+AGG - chr2_2:56103154-56103173 Msa0259220:CDS 25.0%
! TTGATAGAAAATCCATCATT+TGG + chr2_2:56103222-56103241 None:intergenic 25.0%
! AGTCGTTTAAGAAATGTAAA+AGG - chr2_2:56102158-56102177 Msa0259220:CDS 25.0%
! CTCTTCAATATCTTTCTTTA+TGG + chr2_2:56102215-56102234 None:intergenic 25.0%
! GATGCAACAAACAAATTAAT+TGG - chr2_2:56102397-56102416 Msa0259220:CDS 25.0%
! TTGATTCAAATTCTTTCACA+CGG + chr2_2:56102666-56102685 None:intergenic 25.0%
! TGTGAAAGAATTTGAATCAA+AGG - chr2_2:56102666-56102685 Msa0259220:CDS 25.0%
! GGAATTTGAATCAAAAAAGA+AGG - chr2_2:56103102-56103121 Msa0259220:CDS 25.0%
! TCAAAAAAGAAGGAATTTGA+AGG - chr2_2:56103112-56103131 Msa0259220:CDS 25.0%
! TCAAAAGATAACAAACTTGA+AGG - chr2_2:56103154-56103173 Msa0259220:CDS 25.0%
! TTGATAGAAAATCCATCATT+TGG + chr2_2:56103222-56103241 None:intergenic 25.0%
AAAAGTTGAAGTGAAGAAAG+AGG - chr2_2:56102306-56102325 Msa0259220:CDS 30.0%
AGAATTTGAATCAAAGGAGA+AGG - chr2_2:56102672-56102691 Msa0259220:CDS 30.0%
TTAATTCATGCTCCTTCAAT+TGG + chr2_2:56102855-56102874 None:intergenic 30.0%
! ATTGAAGGAGCATGAATTAA+AGG - chr2_2:56102855-56102874 Msa0259220:CDS 30.0%
TTAAAGGAGAAGGAATTTGA+AGG - chr2_2:56102871-56102890 Msa0259220:CDS 30.0%
!! GAATCTAAGAAGAAGCATTT+CGG - chr2_2:56102901-56102920 Msa0259220:CDS 30.0%
!! CCTTCACTTGTTTTTCAAAT+TGG + chr2_2:56103044-56103063 None:intergenic 30.0%
CCAATTTGAAAAACAAGTGA+AGG - chr2_2:56103041-56103060 Msa0259220:CDS 30.0%
AGAGAGAATTTGAAGATCAA+AGG - chr2_2:56103329-56103348 Msa0259220:CDS 30.0%
AGAATTTGAAGATCAAAGGA+AGG - chr2_2:56103333-56103352 Msa0259220:CDS 30.0%
GCAATTGAAAGGACAATTTA+AGG - chr2_2:56103417-56103436 Msa0259220:CDS 30.0%
TCTAAAGAGAAGCAATTTGT+TGG - chr2_2:56103448-56103467 Msa0259220:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG - chr2_2:56103322-56103341 Msa0259220:CDS 30.0%
AAGAGCTCAAAACAAAAGAA+AGG - chr2_2:56103605-56103624 Msa0259220:CDS 30.0%
ACAAAAGAAAGGCAATTGAA+AGG - chr2_2:56103616-56103635 Msa0259220:CDS 30.0%
TCTAAAGAGAAGCAATTTGA+TGG - chr2_2:56103658-56103677 Msa0259220:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG - chr2_2:56103322-56103341 Msa0259220:CDS 30.0%
AAAAGTTGAAGTGAAGAAAG+AGG - chr2_2:56102306-56102325 Msa0259220:CDS 30.0%
AGAATTTGAATCAAAGGAGA+AGG - chr2_2:56102672-56102691 Msa0259220:CDS 30.0%
TTAATTCATGCTCCTTCAAT+TGG + chr2_2:56102855-56102874 None:intergenic 30.0%
! ATTGAAGGAGCATGAATTAA+AGG - chr2_2:56102855-56102874 Msa0259220:CDS 30.0%
TTAAAGGAGAAGGAATTTGA+AGG - chr2_2:56102871-56102890 Msa0259220:CDS 30.0%
!! GAATCTAAGAAGAAGCATTT+CGG - chr2_2:56102901-56102920 Msa0259220:CDS 30.0%
!! CCTTCACTTGTTTTTCAAAT+TGG + chr2_2:56103044-56103063 None:intergenic 30.0%
CCAATTTGAAAAACAAGTGA+AGG - chr2_2:56103041-56103060 Msa0259220:CDS 30.0%
AGAGAGAATTTGAAGATCAA+AGG - chr2_2:56103329-56103348 Msa0259220:CDS 30.0%
AGAATTTGAAGATCAAAGGA+AGG - chr2_2:56103333-56103352 Msa0259220:CDS 30.0%
GCAATTGAAAGGACAATTTA+AGG - chr2_2:56103417-56103436 Msa0259220:CDS 30.0%
TCTAAAGAGAAGCAATTTGT+TGG - chr2_2:56103448-56103467 Msa0259220:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG - chr2_2:56103322-56103341 Msa0259220:CDS 30.0%
AAGAGCTCAAAACAAAAGAA+AGG - chr2_2:56103605-56103624 Msa0259220:CDS 30.0%
ACAAAAGAAAGGCAATTGAA+AGG - chr2_2:56103616-56103635 Msa0259220:CDS 30.0%
TCTAAAGAGAAGCAATTTGA+TGG - chr2_2:56103658-56103677 Msa0259220:CDS 30.0%
TCAAAAGAGAGAGAATTTGA+AGG - chr2_2:56103322-56103341 Msa0259220:CDS 30.0%
! TGGTGATGATAATGTGAAGA+AGG - chr2_2:56101877-56101896 Msa0259220:CDS 35.0%
TCAAAGTCTTGACAAGAAAC+AGG + chr2_2:56101905-56101924 None:intergenic 35.0%
! CTTTTAGACATACTAGACGA+AGG + chr2_2:56102076-56102095 None:intergenic 35.0%
CTTCGTCTAGTATGTCTAAA+AGG - chr2_2:56102074-56102093 Msa0259220:CDS 35.0%
TCTAGTATGTCTAAAAGGCA+GGG - chr2_2:56102079-56102098 Msa0259220:CDS 35.0%
!!! GGTACATGCAGCAATTTTTT+GGG + chr2_2:56102347-56102366 None:intergenic 35.0%
TGCATCAAGATCTTTCTCTT+TGG + chr2_2:56102383-56102402 None:intergenic 35.0%
GCAATTTAAAGACCAGGTTA+AGG - chr2_2:56102525-56102544 Msa0259220:intron 35.0%
ACAAAAGAGATGCAACATGA+AGG - chr2_2:56102724-56102743 Msa0259220:CDS 35.0%
TCCAAAGAGAATCAACTTGA+AGG - chr2_2:56102829-56102848 Msa0259220:CDS 35.0%
GTCATTGAAAGAACAAGTTG+AGG - chr2_2:56102957-56102976 Msa0259220:CDS 35.0%
TTGATTCAAATTCCTTCACG+CGG + chr2_2:56103096-56103115 None:intergenic 35.0%
GGAATTTGAAGGTGAATTGA+AGG - chr2_2:56103123-56103142 Msa0259220:CDS 35.0%
CAAACTTGAAGGCAAAGTAA+AGG - chr2_2:56103165-56103184 Msa0259220:CDS 35.0%
GGAGTTTGAATCAAAAGAGA+AGG - chr2_2:56103186-56103205 Msa0259220:CDS 35.0%
GGAATTTGAATGCCAAATGA+TGG - chr2_2:56102756-56102775 Msa0259220:CDS 35.0%
TTGACTCAAACTCCTTCATT+TGG + chr2_2:56103264-56103283 None:intergenic 35.0%
ACAAAAGAGAGGCAATTGAA+AGG - chr2_2:56103406-56103425 Msa0259220:CDS 35.0%
AGAATTTGAAGGCCAAATGA+AGG - chr2_2:56103543-56103562 Msa0259220:CDS 35.0%
TAGATTCCAGTTCCTTCATT+TGG + chr2_2:56103558-56103577 None:intergenic 35.0%
GCAATTGAAAGGACAAGTTA+GGG - chr2_2:56103627-56103646 Msa0259220:CDS 35.0%
! TGGTGATGATAATGTGAAGA+AGG - chr2_2:56101877-56101896 Msa0259220:CDS 35.0%
TCAAAGTCTTGACAAGAAAC+AGG + chr2_2:56101905-56101924 None:intergenic 35.0%
! CTTTTAGACATACTAGACGA+AGG + chr2_2:56102076-56102095 None:intergenic 35.0%
CTTCGTCTAGTATGTCTAAA+AGG - chr2_2:56102074-56102093 Msa0259220:CDS 35.0%
TCTAGTATGTCTAAAAGGCA+GGG - chr2_2:56102079-56102098 Msa0259220:CDS 35.0%
!!! GGTACATGCAGCAATTTTTT+GGG + chr2_2:56102347-56102366 None:intergenic 35.0%
TGCATCAAGATCTTTCTCTT+TGG + chr2_2:56102383-56102402 None:intergenic 35.0%
GCAATTTAAAGACCAGGTTA+AGG - chr2_2:56102525-56102544 Msa0259220:intron 35.0%
ACAAAAGAGATGCAACATGA+AGG - chr2_2:56102724-56102743 Msa0259220:CDS 35.0%
TCCAAAGAGAATCAACTTGA+AGG - chr2_2:56102829-56102848 Msa0259220:CDS 35.0%
GTCATTGAAAGAACAAGTTG+AGG - chr2_2:56102957-56102976 Msa0259220:CDS 35.0%
TTGATTCAAATTCCTTCACG+CGG + chr2_2:56103096-56103115 None:intergenic 35.0%
GGAATTTGAAGGTGAATTGA+AGG - chr2_2:56103123-56103142 Msa0259220:CDS 35.0%
CAAACTTGAAGGCAAAGTAA+AGG - chr2_2:56103165-56103184 Msa0259220:CDS 35.0%
GGAGTTTGAATCAAAAGAGA+AGG - chr2_2:56103186-56103205 Msa0259220:CDS 35.0%
GGAATTTGAATGCCAAATGA+TGG - chr2_2:56102756-56102775 Msa0259220:CDS 35.0%
TTGACTCAAACTCCTTCATT+TGG + chr2_2:56103264-56103283 None:intergenic 35.0%
ACAAAAGAGAGGCAATTGAA+AGG - chr2_2:56103406-56103425 Msa0259220:CDS 35.0%
AGAATTTGAAGGCCAAATGA+AGG - chr2_2:56103543-56103562 Msa0259220:CDS 35.0%
TAGATTCCAGTTCCTTCATT+TGG + chr2_2:56103558-56103577 None:intergenic 35.0%
GCAATTGAAAGGACAAGTTA+GGG - chr2_2:56103627-56103646 Msa0259220:CDS 35.0%
TCTGATACGCCAACAATTTG+TGG - chr2_2:56101851-56101870 Msa0259220:CDS 40.0%
TCATCAAACAGCCTCTTAAC+TGG + chr2_2:56101974-56101993 None:intergenic 40.0%
TCATTGCCGTGATCATCATA+TGG + chr2_2:56102040-56102059 None:intergenic 40.0%
GTCTAGTATGTCTAAAAGGC+AGG - chr2_2:56102078-56102097 Msa0259220:CDS 40.0%
GCTGATGAATGAACTTGCAT+TGG - chr2_2:56102129-56102148 Msa0259220:CDS 40.0%
AGTGAAGAAAGAGGAACTGA+AGG - chr2_2:56102315-56102334 Msa0259220:CDS 40.0%
!!! CGGTACATGCAGCAATTTTT+TGG + chr2_2:56102348-56102367 None:intergenic 40.0%
AAAAATTGCTGCATGTACCG+TGG - chr2_2:56102348-56102367 Msa0259220:CDS 40.0%
GAATAGCTGTGCTCTAATGA+AGG - chr2_2:56102483-56102502 Msa0259220:CDS 40.0%
GCAGAAGCAATTTAAAGACC+AGG - chr2_2:56102519-56102538 Msa0259220:intron 40.0%
TTGACTCAAGTTCCTTAACC+TGG + chr2_2:56102540-56102559 None:intergenic 40.0%
TCAAAGGAGAAGGAACTTGA+AGG - chr2_2:56102682-56102701 Msa0259220:CDS 40.0%
AGAGATGCAACATGAAGGTT+CGG - chr2_2:56102729-56102748 Msa0259220:CDS 40.0%
TCAATACCTGCTGCATCATT+TGG + chr2_2:56102771-56102790 None:intergenic 40.0%
GCATTGTGAAAGCCAAATGA+AGG - chr2_2:56102798-56102817 Msa0259220:CDS 40.0%
!! GCCTTCAAGTTGATTCTCTT+TGG + chr2_2:56102833-56102852 None:intergenic 40.0%
TCAACTTGAAGGCCAATTGA+AGG - chr2_2:56102840-56102859 Msa0259220:CDS 40.0%
GGAGCATGAATTAAAGGAGA+AGG - chr2_2:56102861-56102880 Msa0259220:CDS 40.0%
AGGAGCTCAAATCAAGAATG+AGG - chr2_2:56102935-56102954 Msa0259220:CDS 40.0%
AGTCAAGAGAGTCAACTTGA+AGG - chr2_2:56103070-56103089 Msa0259220:CDS 40.0%
GCATTTCGAAAGCCAAATGA+AGG - chr2_2:56103249-56103268 Msa0259220:CDS 40.0%
TTGATTCATGCTCCTTCACT+CGG + chr2_2:56103306-56103325 None:intergenic 40.0%
TGAAGATCAAAGGAAGGAAC+TGG - chr2_2:56103339-56103358 Msa0259220:CDS 40.0%
!! GAAGCATTTTGAAAGCCAAG+TGG - chr2_2:56103372-56103391 Msa0259220:CDS 40.0%
AGGAGCTCAAAACAAAAGAG+AGG - chr2_2:56103395-56103414 Msa0259220:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG + chr2_2:56103474-56103493 None:intergenic 40.0%
! ACTGGAATCTAAAACGAAGC+AGG - chr2_2:56103567-56103586 Msa0259220:CDS 40.0%
!!! TTGTTTTGAGCTCTTCCACT+TGG + chr2_2:56103600-56103619 None:intergenic 40.0%
GGCAATTGAAAGGACAAGTT+AGG - chr2_2:56103626-56103645 Msa0259220:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG + chr2_2:56103474-56103493 None:intergenic 40.0%
TTGATTCATGCTCCTTCACT+CGG + chr2_2:56103306-56103325 None:intergenic 40.0%
TCTGATACGCCAACAATTTG+TGG - chr2_2:56101851-56101870 Msa0259220:CDS 40.0%
TCATCAAACAGCCTCTTAAC+TGG + chr2_2:56101974-56101993 None:intergenic 40.0%
TCATTGCCGTGATCATCATA+TGG + chr2_2:56102040-56102059 None:intergenic 40.0%
GTCTAGTATGTCTAAAAGGC+AGG - chr2_2:56102078-56102097 Msa0259220:CDS 40.0%
GCTGATGAATGAACTTGCAT+TGG - chr2_2:56102129-56102148 Msa0259220:CDS 40.0%
AGTGAAGAAAGAGGAACTGA+AGG - chr2_2:56102315-56102334 Msa0259220:CDS 40.0%
!!! CGGTACATGCAGCAATTTTT+TGG + chr2_2:56102348-56102367 None:intergenic 40.0%
AAAAATTGCTGCATGTACCG+TGG - chr2_2:56102348-56102367 Msa0259220:CDS 40.0%
GAATAGCTGTGCTCTAATGA+AGG - chr2_2:56102483-56102502 Msa0259220:CDS 40.0%
GCAGAAGCAATTTAAAGACC+AGG - chr2_2:56102519-56102538 Msa0259220:intron 40.0%
TTGACTCAAGTTCCTTAACC+TGG + chr2_2:56102540-56102559 None:intergenic 40.0%
TCAAAGGAGAAGGAACTTGA+AGG - chr2_2:56102682-56102701 Msa0259220:CDS 40.0%
AGAGATGCAACATGAAGGTT+CGG - chr2_2:56102729-56102748 Msa0259220:CDS 40.0%
TCAATACCTGCTGCATCATT+TGG + chr2_2:56102771-56102790 None:intergenic 40.0%
GCATTGTGAAAGCCAAATGA+AGG - chr2_2:56102798-56102817 Msa0259220:CDS 40.0%
!! GCCTTCAAGTTGATTCTCTT+TGG + chr2_2:56102833-56102852 None:intergenic 40.0%
TCAACTTGAAGGCCAATTGA+AGG - chr2_2:56102840-56102859 Msa0259220:CDS 40.0%
GGAGCATGAATTAAAGGAGA+AGG - chr2_2:56102861-56102880 Msa0259220:CDS 40.0%
AGGAGCTCAAATCAAGAATG+AGG - chr2_2:56102935-56102954 Msa0259220:CDS 40.0%
AGTCAAGAGAGTCAACTTGA+AGG - chr2_2:56103070-56103089 Msa0259220:CDS 40.0%
GCATTTCGAAAGCCAAATGA+AGG - chr2_2:56103249-56103268 Msa0259220:CDS 40.0%
TTGATTCATGCTCCTTCACT+CGG + chr2_2:56103306-56103325 None:intergenic 40.0%
TGAAGATCAAAGGAAGGAAC+TGG - chr2_2:56103339-56103358 Msa0259220:CDS 40.0%
!! GAAGCATTTTGAAAGCCAAG+TGG - chr2_2:56103372-56103391 Msa0259220:CDS 40.0%
AGGAGCTCAAAACAAAAGAG+AGG - chr2_2:56103395-56103414 Msa0259220:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG + chr2_2:56103474-56103493 None:intergenic 40.0%
! ACTGGAATCTAAAACGAAGC+AGG - chr2_2:56103567-56103586 Msa0259220:CDS 40.0%
!!! TTGTTTTGAGCTCTTCCACT+TGG + chr2_2:56103600-56103619 None:intergenic 40.0%
GGCAATTGAAAGGACAAGTT+AGG - chr2_2:56103626-56103645 Msa0259220:CDS 40.0%
TTGACTCAAACTCCTTCACA+CGG + chr2_2:56103474-56103493 None:intergenic 40.0%
TTGATTCATGCTCCTTCACT+CGG + chr2_2:56103306-56103325 None:intergenic 40.0%
GATACGCCAACAATTTGTGG+TGG - chr2_2:56101854-56101873 Msa0259220:CDS 45.0%
TCACCACCACCACAAATTGT+TGG + chr2_2:56101863-56101882 None:intergenic 45.0%
CTGCTAGACTTCCAGTTAAG+AGG - chr2_2:56101960-56101979 Msa0259220:CDS 45.0%
GCGCAACCATATGATGATCA+CGG - chr2_2:56102031-56102050 Msa0259220:CDS 45.0%
TGCAAGTTCATTCATCAGCG+AGG + chr2_2:56102128-56102147 None:intergenic 45.0%
!! GTCAAACGAGAAGCACTTTG+AGG - chr2_2:56102597-56102616 Msa0259220:intron 45.0%
!! ACGAGAAGCACTTTGAGGAA+CGG - chr2_2:56102602-56102621 Msa0259220:intron 45.0%
! GCACTTTGAGGAACGGTTTA+AGG - chr2_2:56102609-56102628 Msa0259220:CDS 45.0%
TGAATGCCAAATGATGCAGC+AGG - chr2_2:56102762-56102781 Msa0259220:CDS 45.0%
TGGACTCAAGCTCCTTCATT+TGG + chr2_2:56102813-56102832 None:intergenic 45.0%
GCTTCTTCTTAGATTCCACG+CGG + chr2_2:56102897-56102916 None:intergenic 45.0%
! GAAGCATTTCGGAAGCATGA+TGG - chr2_2:56102912-56102931 Msa0259220:CDS 45.0%
TCAACATGAAAGCCGAGTGA+AGG - chr2_2:56103291-56103310 Msa0259220:CDS 45.0%
!! GCATTTTGAAAGCCAAGTGG+AGG - chr2_2:56103375-56103394 Msa0259220:CDS 45.0%
!!! TTGTTTTGAGCTCCTCCACT+TGG + chr2_2:56103390-56103409 None:intergenic 45.0%
TTGATTCATGCTCCTTCGCT+CGG + chr2_2:56103516-56103535 None:intergenic 45.0%
TGAAGGCCAAATGAAGGAAC+TGG - chr2_2:56103549-56103568 Msa0259220:CDS 45.0%
GAGAGAGAATTTGAAGGCCA+AGG - chr2_2:56103538-56103557 Msa0259220:CDS 45.0%
GAATTTGAAGGCCAAGGAAC+TGG - chr2_2:56103754-56103773 Msa0259220:CDS 45.0%
GATACGCCAACAATTTGTGG+TGG - chr2_2:56101854-56101873 Msa0259220:CDS 45.0%
TCACCACCACCACAAATTGT+TGG + chr2_2:56101863-56101882 None:intergenic 45.0%
CTGCTAGACTTCCAGTTAAG+AGG - chr2_2:56101960-56101979 Msa0259220:CDS 45.0%
GCGCAACCATATGATGATCA+CGG - chr2_2:56102031-56102050 Msa0259220:CDS 45.0%
TGCAAGTTCATTCATCAGCG+AGG + chr2_2:56102128-56102147 None:intergenic 45.0%
!! GTCAAACGAGAAGCACTTTG+AGG - chr2_2:56102597-56102616 Msa0259220:intron 45.0%
!! ACGAGAAGCACTTTGAGGAA+CGG - chr2_2:56102602-56102621 Msa0259220:intron 45.0%
! GCACTTTGAGGAACGGTTTA+AGG - chr2_2:56102609-56102628 Msa0259220:CDS 45.0%
TGAATGCCAAATGATGCAGC+AGG - chr2_2:56102762-56102781 Msa0259220:CDS 45.0%
TGGACTCAAGCTCCTTCATT+TGG + chr2_2:56102813-56102832 None:intergenic 45.0%
GCTTCTTCTTAGATTCCACG+CGG + chr2_2:56102897-56102916 None:intergenic 45.0%
! GAAGCATTTCGGAAGCATGA+TGG - chr2_2:56102912-56102931 Msa0259220:CDS 45.0%
TCAACATGAAAGCCGAGTGA+AGG - chr2_2:56103291-56103310 Msa0259220:CDS 45.0%
!! GCATTTTGAAAGCCAAGTGG+AGG - chr2_2:56103375-56103394 Msa0259220:CDS 45.0%
!!! TTGTTTTGAGCTCCTCCACT+TGG + chr2_2:56103390-56103409 None:intergenic 45.0%
TTGATTCATGCTCCTTCGCT+CGG + chr2_2:56103516-56103535 None:intergenic 45.0%
TGAAGGCCAAATGAAGGAAC+TGG - chr2_2:56103549-56103568 Msa0259220:CDS 45.0%
GAGAGAGAATTTGAAGGCCA+AGG - chr2_2:56103538-56103557 Msa0259220:CDS 45.0%
GAATTTGAAGGCCAAGGAAC+TGG - chr2_2:56103754-56103773 Msa0259220:CDS 45.0%
ACGCCAACAATTTGTGGTGG+TGG - chr2_2:56101857-56101876 Msa0259220:CDS 50.0%
TGCATGTACCGTGGAACTTC+AGG - chr2_2:56102357-56102376 Msa0259220:CDS 50.0%
CTCTTTGGCCTGAAGTTCCA+CGG + chr2_2:56102368-56102387 None:intergenic 50.0%
GAAGCAGTGTGAAAGACGAG+TGG - chr2_2:56102564-56102583 Msa0259220:intron 50.0%
TGAGGAACGGTTTAAGGAGC+TGG - chr2_2:56102615-56102634 Msa0259220:CDS 50.0%
GGAACTTGAAGGACGAGCAA+TGG - chr2_2:56102693-56102712 Msa0259220:CDS 50.0%
AAGGACGAGCAATGGAGCTA+GGG - chr2_2:56102701-56102720 Msa0259220:CDS 50.0%
!! GCAACATGAAGGTTCGGTGA+AGG - chr2_2:56102735-56102754 Msa0259220:CDS 50.0%
! GCATTTCGGAAGCATGATGG+AGG - chr2_2:56102915-56102934 Msa0259220:CDS 50.0%
!! GCAATTTGTTGGCCGTGTGA+AGG - chr2_2:56103459-56103478 Msa0259220:CDS 50.0%
! GAAGCAGGTTGAAAGCCAAG+TGG - chr2_2:56103582-56103601 Msa0259220:CDS 50.0%
! GCAATTTGATGGCCGTGTGA+AGG - chr2_2:56103669-56103688 Msa0259220:CDS 50.0%
GCAACATGAAAGCCGAGTGA+AGG - chr2_2:56103711-56103730 Msa0259220:CDS 50.0%
ACGCCAACAATTTGTGGTGG+TGG - chr2_2:56101857-56101876 Msa0259220:CDS 50.0%
TGCATGTACCGTGGAACTTC+AGG - chr2_2:56102357-56102376 Msa0259220:CDS 50.0%
CTCTTTGGCCTGAAGTTCCA+CGG + chr2_2:56102368-56102387 None:intergenic 50.0%
GAAGCAGTGTGAAAGACGAG+TGG - chr2_2:56102564-56102583 Msa0259220:intron 50.0%
TGAGGAACGGTTTAAGGAGC+TGG - chr2_2:56102615-56102634 Msa0259220:CDS 50.0%
GGAACTTGAAGGACGAGCAA+TGG - chr2_2:56102693-56102712 Msa0259220:CDS 50.0%
AAGGACGAGCAATGGAGCTA+GGG - chr2_2:56102701-56102720 Msa0259220:CDS 50.0%
!! GCAACATGAAGGTTCGGTGA+AGG - chr2_2:56102735-56102754 Msa0259220:CDS 50.0%
! GCATTTCGGAAGCATGATGG+AGG - chr2_2:56102915-56102934 Msa0259220:CDS 50.0%
!! GCAATTTGTTGGCCGTGTGA+AGG - chr2_2:56103459-56103478 Msa0259220:CDS 50.0%
! GAAGCAGGTTGAAAGCCAAG+TGG - chr2_2:56103582-56103601 Msa0259220:CDS 50.0%
! GCAATTTGATGGCCGTGTGA+AGG - chr2_2:56103669-56103688 Msa0259220:CDS 50.0%
GCAACATGAAAGCCGAGTGA+AGG - chr2_2:56103711-56103730 Msa0259220:CDS 50.0%
GATCACGGCAATGACGCAGA+TGG - chr2_2:56102046-56102065 Msa0259220:CDS 55.0%
GCAGTGTGAAAGACGAGTGG+AGG - chr2_2:56102567-56102586 Msa0259220:intron 55.0%
GAAGGACGAGCAATGGAGCT+AGG - chr2_2:56102700-56102719 Msa0259220:CDS 55.0%
GAAGGAATTTGAAGGCCGCG+TGG - chr2_2:56102879-56102898 Msa0259220:CDS 55.0%
TCAACTTGAAGGCCGCGTGA+AGG - chr2_2:56103081-56103100 Msa0259220:CDS 55.0%
GCAACATGAAAGCCGAGCGA+AGG - chr2_2:56103501-56103520 Msa0259220:CDS 55.0%
GATCACGGCAATGACGCAGA+TGG - chr2_2:56102046-56102065 Msa0259220:CDS 55.0%
GCAGTGTGAAAGACGAGTGG+AGG - chr2_2:56102567-56102586 Msa0259220:intron 55.0%
GAAGGACGAGCAATGGAGCT+AGG - chr2_2:56102700-56102719 Msa0259220:CDS 55.0%
GAAGGAATTTGAAGGCCGCG+TGG - chr2_2:56102879-56102898 Msa0259220:CDS 55.0%
TCAACTTGAAGGCCGCGTGA+AGG - chr2_2:56103081-56103100 Msa0259220:CDS 55.0%
GCAACATGAAAGCCGAGCGA+AGG - chr2_2:56103501-56103520 Msa0259220:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56101836 56103783 56101836 ID=Msa0259220;Name=Msa0259220
chr2_2 mRNA 56101836 56103783 56101836 ID=Msa0259220-mRNA-1;Parent=Msa0259220;Name=Msa0259220-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|2|0|623
chr2_2 exon 56102604 56103783 56102604 ID=Msa0259220-mRNA-1:exon:16958;Parent=Msa0259220-mRNA-1
chr2_2 exon 56101836 56102527 56101836 ID=Msa0259220-mRNA-1:exon:16957;Parent=Msa0259220-mRNA-1
chr2_2 CDS 56102604 56103783 56102604 ID=Msa0259220-mRNA-1:cds;Parent=Msa0259220-mRNA-1
chr2_2 CDS 56101836 56102527 56101836 ID=Msa0259220-mRNA-1:cds;Parent=Msa0259220-mRNA-1
Gene Sequence

>Msa0259220

ATGGATGTCGAGGCTTCTGATACGCCAACAATTTGTGGTGGTGGTGATGATAATGTGAAGAAGGAACCTGTTTCTTGTCAAGACTTTGAATCATGTTTTAGAACATTTAGTAGTAAACATGATTCTGCTAGACTTCCAGTTAAGAGGCTGTTTGATGACAGCGATTCATTCGATATTTCTGTTAAGAAATCAAAAGCGCAACCATATGATGATCACGGCAATGACGCAGATGGTATTCCTTCGTCTAGTATGTCTAAAAGGCAGGGCAAATTTACTAATGAATCATTTTCCTCGCTGATGAATGAACTTGCATTGGCACAAAAGTCGTTTAAGAAATGTAAAAGGAAGAGTCGAGTAGAAAAAGAGAGATTGCAGTCCATAAAGAAAGATATTGAAGAGTGCTTCAAAGAGCTTGAAGATAAGAACAAGCAAGTTAGTTGTGTAAATGAAATTCACAACGAAATGCAGAGAAAAGTTGAAGTGAAGAAAGAGGAACTGAAGGCTCTTTCCCAAAAAATTGCTGCATGTACCGTGGAACTTCAGGCCAAAGAGAAAGATCTTGATGCAACAAACAAATTAATTGGTGAAGAAGCAGAAAAATTAGAGTCGACAAAGAAGAAATCGATAAATATAATATTAGAAATGAAGAATAGCTGTGCTCTAATGAAGGACTCTGAGTCTAAGCAGAAGCAATTTAAAGACCAGGTTAAGGAACTTGAGTCAAAAGAGAAGCAGTGTGAAAGACGAGTGGAGGAGCTTCAGTCAAACGAGAAGCACTTTGAGGAACGGTTTAAGGAGCTGGAGTCAAGAGAGAAGCAGCTTGAAGTCCGTGTGAAAGAATTTGAATCAAAGGAGAAGGAACTTGAAGGACGAGCAATGGAGCTAGGGACAAAAGAGATGCAACATGAAGGTTCGGTGAAGGAATTTGAATGCCAAATGATGCAGCAGGTATTGAAGCAGAAGCATTGTGAAAGCCAAATGAAGGAGCTTGAGTCCAAAGAGAATCAACTTGAAGGCCAATTGAAGGAGCATGAATTAAAGGAGAAGGAATTTGAAGGCCGCGTGGAATCTAAGAAGAAGCATTTCGGAAGCATGATGGAGGAGCTCAAATCAAGAATGAGGTCATTGAAAGAACAAGTTGAGGAACTTGACTCTAAAGAGAAGCGACTTGATCATCAATGCCGCGTGAAGGAATTTGAATCAAAAAAGAAGGAATTTGAAGGTGAATTGAAGGAGTTTGAGTCAAAAGATAACAAACTTGAAGGCAAAGTAAAGGAGTTTGAATCAAAAGAGAAGGAATTTGAATGCCAAATGATGGATTTTCTATCAAAACAGAAGCATTTCGAAAGCCAAATGAAGGAGTTTGAGTCAAAAAAGAATCAACATGAAAGCCGAGTGAAGGAGCATGAATCAAAAGAGAGAGAATTTGAAGATCAAAGGAAGGAACTGGAATCTAAAAAGAAGCATTTTGAAAGCCAAGTGGAGGAGCTCAAAACAAAAGAGAGGCAATTGAAAGGACAATTTAAGGAACTTGAGTCTAAAGAGAAGCAATTTGTTGGCCGTGTGAAGGAGTTTGAGTCAAAAGAGAAGCAACATGAAAGCCGAGCGAAGGAGCATGAATCAAAAGAGAGAGAATTTGAAGGCCAAATGAAGGAACTGGAATCTAAAACGAAGCAGGTTGAAAGCCAAGTGGAAGAGCTCAAAACAAAAGAAAGGCAATTGAAAGGACAAGTTAGGGAACTTGAGTCTAAAGAGAAGCAATTTGATGGCCGTGTGAAGGAGTTTGAGTCAAAAGAGAAGCAACATGAAAGCCGAGTGAAGGAGCATGAATCAAAAGAGAGAGAATTTGAAGGCCAAGGAACTGGAATCTAA

Protein sequence

>Msa0259220

MDVEASDTPTICGGGDDNVKKEPVSCQDFESCFRTFSSKHDSARLPVKRLFDDSDSFDISVKKSKAQPYDDHGNDADGIPSSSMSKRQGKFTNESFSSLMNELALAQKSFKKCKRKSRVEKERLQSIKKDIEECFKELEDKNKQVSCVNEIHNEMQRKVEVKKEELKALSQKIAACTVELQAKEKDLDATNKLIGEEAEKLESTKKKSINIILEMKNSCALMKDSESKQKQFKDQVKELESKEKQCERRVEELQSNEKHFEERFKELESREKQLEVRVKEFESKEKELEGRAMELGTKEMQHEGSVKEFECQMMQQVLKQKHCESQMKELESKENQLEGQLKEHELKEKEFEGRVESKKKHFGSMMEELKSRMRSLKEQVEELDSKEKRLDHQCRVKEFESKKKEFEGELKEFESKDNKLEGKVKEFESKEKEFECQMMDFLSKQKHFESQMKEFESKKNQHESRVKEHESKEREFEDQRKELESKKKHFESQVEELKTKERQLKGQFKELESKEKQFVGRVKEFESKEKQHESRAKEHESKEREFEGQMKELESKTKQVESQVEELKTKERQLKGQVRELESKEKQFDGRVKEFESKEKQHESRVKEHESKEREFEGQGTGI*