AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 110 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGACCATTTGAGGAATT+TGG 0.091335 2_4:-55679313 Msa0336300:CDS
TATTCTTCTGCTTATGGTTT+TGG 0.179425 2_4:-55678638 Msa0336300:three_prime_UTR
GGCTAAGTCCATGTATGTTT+TGG 0.198774 2_4:-55679616 Msa0336300:CDS
GGTATTCTGAAACGCTTATT+TGG 0.210433 2_4:-55678857 Msa0336300:intron
CTACTATCTGATGGTGTTAT+AGG 0.221334 2_4:-55678937 Msa0336300:three_prime_UTR
GGTCATTATTCTTCTGCTTA+TGG 0.225896 2_4:-55678644 Msa0336300:three_prime_UTR
TCCCATTGAATATAACAATT+TGG 0.226031 2_4:-55679027 Msa0336300:three_prime_UTR
ACGTTGCAAACAAAGCAAAA+AGG 0.281082 2_4:+55678991 None:intergenic
CACGGTGCTTGATGTAATAA+AGG 0.314777 2_4:+55680886 None:intergenic
CTCCAAATTGTTATATTCAA+TGG 0.319398 2_4:+55679025 None:intergenic
GATACCTCTGTAGACTATTC+GGG 0.342734 2_4:-55679540 Msa0336300:CDS
TTGTGTACAGCTGGATAAAA+AGG 0.352991 2_4:+55680565 None:intergenic
TGATACCTCTGTAGACTATT+CGG 0.353158 2_4:-55679541 Msa0336300:CDS
ATTGACCATTTGAGGAATTT+GGG 0.370009 2_4:-55679312 Msa0336300:CDS
ATTGAAATATGAATTATGTT+TGG 0.374663 2_4:+55680437 None:intergenic
TCCAAATTGTTATATTCAAT+GGG 0.378237 2_4:+55679026 None:intergenic
TCTCTTTCTTCTTCCTCTGA+TGG 0.381521 2_4:-55680925 Msa0336300:five_prime_UTR
TTGCTTTGTTTGCAACGTTT+AGG 0.389107 2_4:-55678986 Msa0336300:three_prime_UTR
ATCATCTTCGTAATCGTAAT+CGG 0.391487 2_4:+55680355 None:intergenic
ATGGGAAAAGTAAAATCAAA+TGG 0.394524 2_4:+55679044 None:intergenic
TGAAGATGATTGGGAGGTTA+TGG 0.396165 2_4:-55679379 Msa0336300:CDS
AAAGGGAGGCTTTAGCGCTT+AGG 0.397593 2_4:+55680979 None:intergenic
TAACAATTCAACTTTGGTTG+TGG 0.405054 2_4:+55680821 None:intergenic
TTTGAGGAATTTGGGAAGTT+GGG 0.409092 2_4:-55679304 Msa0336300:CDS
AGGAGCAGTATGAAGATGAT+TGG 0.416315 2_4:-55679389 Msa0336300:CDS
GGAGGCATTTGATAACTCTA+AGG 0.416449 2_4:-55679409 Msa0336300:CDS
ATTTGAGGAATTTGGGAAGT+TGG 0.417251 2_4:-55679305 Msa0336300:CDS
AGAAGAGACGAGGTTATGTT+TGG 0.419086 2_4:+55681022 None:intergenic
CTTTAGAGAAATTAATAAGT+AGG 0.420436 2_4:-55679085 Msa0336300:three_prime_UTR
TTTAGCGCTTAGGGTTATAC+AGG 0.421646 2_4:+55680989 None:intergenic
AACAATTCAACTTTGGTTGT+GGG 0.426993 2_4:+55680822 None:intergenic
TAGAATTAACAATTCAACTT+TGG 0.429073 2_4:+55680815 None:intergenic
TTAGTTTGATCTGACGGCTT+AGG 0.429144 2_4:-55680588 Msa0336300:five_prime_UTR
CGACGACGATGCTTGGGATA+AGG 0.434174 2_4:-55679574 Msa0336300:CDS
AAGGGAGGCTTTAGCGCTTA+GGG 0.435258 2_4:+55680980 None:intergenic
GATTGATCTCCCTCCTCAAA+TGG 0.443391 2_4:+55679447 None:intergenic
AAAAGCCGACGACGATGCTT+GGG 0.450005 2_4:-55679580 Msa0336300:CDS
AATTCCTTTGAATGCGCAAA+AGG 0.451717 2_4:+55679666 None:intergenic
GGAGCAGTATGAAGATGATT+GGG 0.452002 2_4:-55679388 Msa0336300:CDS
TGATAAGTGCATTGAAGTCT+TGG 0.459378 2_4:-55679637 Msa0336300:CDS
AACTTCCCAAATTCCTCAAA+TGG 0.460033 2_4:+55679307 None:intergenic
TGGGAGGTTATGGCTGAGAA+GGG 0.462561 2_4:-55679369 Msa0336300:CDS
TCTTGAGACATATATATAGA+TGG 0.462811 2_4:+55681045 None:intergenic
CTCTGGAGAGGAACCATTTG+AGG 0.464363 2_4:-55679460 Msa0336300:CDS
TGTAGAGGACAAGAAGAAAC+AGG 0.466429 2_4:-55679134 Msa0336300:three_prime_UTR
GAAAAGTGTTTGAGACGAAA+GGG 0.470255 2_4:+55680948 None:intergenic
TGATCTACATCTGGTAGATA+AGG 0.477596 2_4:-55679697 Msa0336300:CDS
AGAAAAGTGTTTGAGACGAA+AGG 0.485916 2_4:+55680947 None:intergenic
TGCGTTGCATTGACCATTTG+AGG 0.489610 2_4:-55679320 Msa0336300:CDS
TCATTTCACATGATAGCCAT+TGG 0.494346 2_4:+55680493 None:intergenic
AAATATGAATTATGTTTGGA+GGG 0.497454 2_4:+55680441 None:intergenic
ACGTCTTAATGATCTACATC+TGG 0.497872 2_4:-55679706 Msa0336300:CDS
GAAATATGAATTATGTTTGG+AGG 0.507205 2_4:+55680440 None:intergenic
TATCTACGGTTGTGTACAGC+TGG 0.507817 2_4:+55680556 None:intergenic
GGAGGTTATGGCTGAGAAGG+GGG 0.509261 2_4:-55679367 Msa0336300:CDS
CATTGAATATAACAATTTGG+AGG 0.509995 2_4:-55679024 Msa0336300:three_prime_UTR
TGGGAAAAGTAAAATCAAAT+GGG 0.510457 2_4:+55679045 None:intergenic
TGATCTTAACATCCATCATA+AGG 0.511158 2_4:-55679256 Msa0336300:CDS
ATTGTCCTCATCAAGAGAAA+AGG 0.511944 2_4:+55679206 None:intergenic
TCTTGTACATCTCCTTATGA+TGG 0.516604 2_4:+55679244 None:intergenic
AAAAGAAAGTAAAATCCAAT+GGG 0.521897 2_4:+55678897 None:intergenic
GGGAAGTTGGGACCAACTCA+TGG 0.526539 2_4:-55679292 Msa0336300:CDS
TAGTTGTTAGTTTGATCTGA+CGG 0.529078 2_4:-55680594 Msa0336300:five_prime_UTR
TTGGGAGGTTATGGCTGAGA+AGG 0.529156 2_4:-55679370 Msa0336300:CDS
GGAAGAGGAAAAGAAGAAAG+AGG 0.532453 2_4:-55679169 Msa0336300:CDS
CAGCCACCCCAAAACATACA+TGG 0.532878 2_4:+55679608 None:intergenic
CTTTGTTTGCAACGTTTAGG+TGG 0.533724 2_4:-55678983 Msa0336300:three_prime_UTR
TAAAAGAAAGTAAAATCCAA+TGG 0.534265 2_4:+55678896 None:intergenic
GGGAGGTTATGGCTGAGAAG+GGG 0.538227 2_4:-55679368 Msa0336300:CDS
TAAGAAAGCTCCAAAGGAAG+AGG 0.539537 2_4:-55679184 Msa0336300:CDS
TCACGGGAGACTTAGATCTA+CGG 0.540098 2_4:+55680312 None:intergenic
ACGGTGCTTGATGTAATAAA+GGG 0.542087 2_4:+55680887 None:intergenic
CGCTTAGGGTTATACAGGAG+AGG 0.548084 2_4:+55680994 None:intergenic
CAAGCTTCAACAATCATCAA+TGG 0.548881 2_4:-55680399 Msa0336300:exon
TCTGATACCTCTGAAGACTC+TGG 0.550583 2_4:-55679477 Msa0336300:CDS
ATATTGTTAATAATGCCCAT+TGG 0.552450 2_4:-55678912 Msa0336300:three_prime_UTR
GGACAAGAAGAAACAGGACC+TGG 0.555173 2_4:-55679128 Msa0336300:three_prime_UTR
CTACGGTGTGAAACACGCTT+AGG 0.564072 2_4:+55680329 None:intergenic
GATTAAAACATTCATATCTA+CGG 0.569804 2_4:+55680542 None:intergenic
AGTCATCATTCTCCATGAGT+TGG 0.581036 2_4:+55679280 None:intergenic
ACGAAAGGGAAGATAACAAA+GGG 0.581131 2_4:+55680962 None:intergenic
TCAATCTGAAGTAGATGTTG+AGG 0.583778 2_4:-55679430 Msa0336300:CDS
AATGGCGTCATCTTCTTCCG+TGG 0.589408 2_4:-55680381 Msa0336300:CDS
CAGATCAAACTAACAACTAA+CGG 0.595583 2_4:+55680598 None:intergenic
GTGGTAACTGTTGCCATCAG+AGG 0.599667 2_4:+55680912 None:intergenic
TGGAGAGGAACCATTTGAGG+AGG 0.600272 2_4:-55679457 Msa0336300:CDS
CTTATCCCAAGCATCGTCGT+CGG 0.606103 2_4:+55679575 None:intergenic
GGACAATAAGAAAGCTCCAA+AGG 0.608201 2_4:-55679190 Msa0336300:CDS
TACACTATACTACTATCTGA+TGG 0.608406 2_4:-55678946 Msa0336300:three_prime_UTR
ATCTGAAGTAGATGTTGAGG+AGG 0.613206 2_4:-55679427 Msa0336300:CDS
GATCTCACAGCTAAAACCTA+CGG 0.616751 2_4:+55680515 None:intergenic
GCAGTATGAAGATGATTGGG+AGG 0.625808 2_4:-55679385 Msa0336300:CDS
GGAGAGGAACCATTTGAGGA+GGG 0.635868 2_4:-55679456 Msa0336300:CDS
ATATAAAATGATTAAAGACA+CGG 0.638078 2_4:+55680868 None:intergenic
AGGACTGAAGAAAACTGTAG+AGG 0.645554 2_4:-55679149 Msa0336300:exon
TACCTCTGAAGACTCTGGAG+AGG 0.646793 2_4:-55679472 Msa0336300:CDS
GACAAGAAGAAACAGGACCT+GGG 0.647578 2_4:-55679127 Msa0336300:three_prime_UTR
GTAATCGTAATCGGTTTCCA+CGG 0.653333 2_4:+55680364 None:intergenic
ATACCTCTGTAGACTATTCG+GGG 0.654853 2_4:-55679539 Msa0336300:CDS
CTTGATGTAATAAAGGGTGG+TGG 0.654928 2_4:+55680893 None:intergenic
GACGAAAGGGAAGATAACAA+AGG 0.656116 2_4:+55680961 None:intergenic
AGGGTTATACAGGAGAGGAG+AGG 0.668300 2_4:+55680999 None:intergenic
TTCCTCTCCAGAGTCTTCAG+AGG 0.678080 2_4:+55679470 None:intergenic
CTCACACTGTGCTATCACCC+AGG 0.684973 2_4:+55679110 None:intergenic
AGAGGAGAGGAGAAGAGACG+AGG 0.696297 2_4:+55681012 None:intergenic
AAAGGGAAGATAACAAAGGG+AGG 0.703136 2_4:+55680965 None:intergenic
TACCTCTGTAGACTATTCGG+GGG 0.707008 2_4:-55679538 Msa0336300:CDS
ATCAAACTAACAACTAACGG+TGG 0.712221 2_4:+55680601 None:intergenic
GTGCTTGATGTAATAAAGGG+TGG 0.740368 2_4:+55680890 None:intergenic
AGAAAAGGTGAGAAACAACA+CGG 0.759293 2_4:+55679221 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAATGATTAAAGACA+CGG + chr2_4:55678800-55678819 None:intergenic 15.0%
!!! TTTTATATGGAAATTTTACA+TGG - chr2_4:55678812-55678831 Msa0336300:intron 15.0%
!! ATTGAAATATGAATTATGTT+TGG + chr2_4:55679231-55679250 None:intergenic 15.0%
!! TAAGAGAAAAATTAAGAAAA+AGG + chr2_4:55679907-55679926 None:intergenic 15.0%
!!! GATTTTACTTTCTTTTAATA+AGG - chr2_4:55680775-55680794 Msa0336300:five_prime_UTR 15.0%
!! ATATAAAATGATTAAAGACA+CGG + chr2_4:55678800-55678819 None:intergenic 15.0%
!!! TTTTATATGGAAATTTTACA+TGG - chr2_4:55678812-55678831 Msa0336300:intron 15.0%
!! ATTGAAATATGAATTATGTT+TGG + chr2_4:55679231-55679250 None:intergenic 15.0%
!! TAAGAGAAAAATTAAGAAAA+AGG + chr2_4:55679907-55679926 None:intergenic 15.0%
!!! GATTTTACTTTCTTTTAATA+AGG - chr2_4:55680775-55680794 Msa0336300:five_prime_UTR 15.0%
!!! GTGTCTTTAATCATTTTATA+TGG - chr2_4:55678799-55678818 Msa0336300:intron 20.0%
!! TAGAATTAACAATTCAACTT+TGG + chr2_4:55678853-55678872 None:intergenic 20.0%
!! AAGAAAAAAATGAAAGATTG+GGG + chr2_4:55678917-55678936 None:intergenic 20.0%
!! GAAGAAAAAAATGAAAGATT+GGG + chr2_4:55678918-55678937 None:intergenic 20.0%
!! AGAAGAAAAAAATGAAAGAT+TGG + chr2_4:55678919-55678938 None:intergenic 20.0%
!! GATTAAAACATTCATATCTA+CGG + chr2_4:55679126-55679145 None:intergenic 20.0%
!! AAATATGAATTATGTTTGGA+GGG + chr2_4:55679227-55679246 None:intergenic 20.0%
!! TCACAAATGAACATATAAAT+AGG + chr2_4:55679810-55679829 None:intergenic 20.0%
!!! TCCATTTTTTCTAATATTTC+AGG - chr2_4:55679933-55679952 Msa0336300:intron 20.0%
!! ACCTGAAATATTAGAAAAAA+TGG + chr2_4:55679937-55679956 None:intergenic 20.0%
!!! CTTTAGAGAAATTAATAAGT+AGG - chr2_4:55680580-55680599 Msa0336300:five_prime_UTR 20.0%
!! TCCAAATTGTTATATTCAAT+GGG + chr2_4:55680642-55680661 None:intergenic 20.0%
!! AAAAGAAAGTAAAATCCAAT+GGG + chr2_4:55680771-55680790 None:intergenic 20.0%
!! TAAAAGAAAGTAAAATCCAA+TGG + chr2_4:55680772-55680791 None:intergenic 20.0%
!!! TTTTAATAAGGCATTAGTAT+TGG - chr2_4:55680787-55680806 Msa0336300:five_prime_UTR 20.0%
!!! TTATTTGGTTCCTATATAAT+GGG - chr2_4:55680823-55680842 Msa0336300:five_prime_UTR 20.0%
!!! CTTTTAAGTGACATAATAAA+TGG - chr2_4:55681000-55681019 Msa0336300:five_prime_UTR 20.0%
!!! GTGTCTTTAATCATTTTATA+TGG - chr2_4:55678799-55678818 Msa0336300:intron 20.0%
!! TAGAATTAACAATTCAACTT+TGG + chr2_4:55678853-55678872 None:intergenic 20.0%
!! AAGAAAAAAATGAAAGATTG+GGG + chr2_4:55678917-55678936 None:intergenic 20.0%
!! GAAGAAAAAAATGAAAGATT+GGG + chr2_4:55678918-55678937 None:intergenic 20.0%
!! AGAAGAAAAAAATGAAAGAT+TGG + chr2_4:55678919-55678938 None:intergenic 20.0%
!! GATTAAAACATTCATATCTA+CGG + chr2_4:55679126-55679145 None:intergenic 20.0%
!! AAATATGAATTATGTTTGGA+GGG + chr2_4:55679227-55679246 None:intergenic 20.0%
!! TCACAAATGAACATATAAAT+AGG + chr2_4:55679810-55679829 None:intergenic 20.0%
!!! TCCATTTTTTCTAATATTTC+AGG - chr2_4:55679933-55679952 Msa0336300:intron 20.0%
!! ACCTGAAATATTAGAAAAAA+TGG + chr2_4:55679937-55679956 None:intergenic 20.0%
!!! CTTTAGAGAAATTAATAAGT+AGG - chr2_4:55680580-55680599 Msa0336300:five_prime_UTR 20.0%
!! TCCAAATTGTTATATTCAAT+GGG + chr2_4:55680642-55680661 None:intergenic 20.0%
!! AAAAGAAAGTAAAATCCAAT+GGG + chr2_4:55680771-55680790 None:intergenic 20.0%
!! TAAAAGAAAGTAAAATCCAA+TGG + chr2_4:55680772-55680791 None:intergenic 20.0%
!!! TTTTAATAAGGCATTAGTAT+TGG - chr2_4:55680787-55680806 Msa0336300:five_prime_UTR 20.0%
!!! TTATTTGGTTCCTATATAAT+GGG - chr2_4:55680823-55680842 Msa0336300:five_prime_UTR 20.0%
!!! CTTTTAAGTGACATAATAAA+TGG - chr2_4:55681000-55681019 Msa0336300:five_prime_UTR 20.0%
! TCTTGAGACATATATATAGA+TGG + chr2_4:55678623-55678642 None:intergenic 25.0%
! CACGAGAAAAAAAAATACTT+TGG + chr2_4:55678876-55678895 None:intergenic 25.0%
! AGAAAAAAATGAAAGATTGG+GGG + chr2_4:55678916-55678935 None:intergenic 25.0%
! CATTTGAAAAATAGTAGATC+TGG + chr2_4:55678951-55678970 None:intergenic 25.0%
! GAAATATGAATTATGTTTGG+AGG + chr2_4:55679228-55679247 None:intergenic 25.0%
!!! ATCGATAGCTAATTTTTTCA+CGG + chr2_4:55679373-55679392 None:intergenic 25.0%
! TGAAAAAATTAGCTATCGAT+TGG - chr2_4:55679373-55679392 Msa0336300:CDS 25.0%
!! GAAAAAATTAGCTATCGATT+GGG - chr2_4:55679374-55679393 Msa0336300:CDS 25.0%
!! AAAAAATTAGCTATCGATTG+GGG - chr2_4:55679375-55679394 Msa0336300:CDS 25.0%
! TTATATGTTCATTTGTGATC+TGG - chr2_4:55679812-55679831 Msa0336300:intron 25.0%
! TGGGAAAAGTAAAATCAAAT+GGG + chr2_4:55680623-55680642 None:intergenic 25.0%
! ATGGGAAAAGTAAAATCAAA+TGG + chr2_4:55680624-55680643 None:intergenic 25.0%
! TCCCATTGAATATAACAATT+TGG - chr2_4:55680638-55680657 Msa0336300:five_prime_UTR 25.0%
! CTCCAAATTGTTATATTCAA+TGG + chr2_4:55680643-55680662 None:intergenic 25.0%
! CATTGAATATAACAATTTGG+AGG - chr2_4:55680641-55680660 Msa0336300:five_prime_UTR 25.0%
! ATATTGTTAATAATGCCCAT+TGG - chr2_4:55680605-55680624 Msa0336300:five_prime_UTR 25.0%
!! CTTATTTGGTTCCTATATAA+TGG - chr2_4:55680822-55680841 Msa0336300:five_prime_UTR 25.0%
! AATTCTACAACCCATTATAT+AGG + chr2_4:55680836-55680855 None:intergenic 25.0%
! TAGAATTAAAGACATGATAG+TGG - chr2_4:55680849-55680868 Msa0336300:five_prime_UTR 25.0%
!! TGCAAAATATTTTTCCAACT+TGG + chr2_4:55680911-55680930 None:intergenic 25.0%
!!! TCATTTTTGAAGAGTTTTGA+TGG - chr2_4:55680971-55680990 Msa0336300:five_prime_UTR 25.0%
! TCTTGAGACATATATATAGA+TGG + chr2_4:55678623-55678642 None:intergenic 25.0%
! CACGAGAAAAAAAAATACTT+TGG + chr2_4:55678876-55678895 None:intergenic 25.0%
! AGAAAAAAATGAAAGATTGG+GGG + chr2_4:55678916-55678935 None:intergenic 25.0%
! CATTTGAAAAATAGTAGATC+TGG + chr2_4:55678951-55678970 None:intergenic 25.0%
! GAAATATGAATTATGTTTGG+AGG + chr2_4:55679228-55679247 None:intergenic 25.0%
!!! ATCGATAGCTAATTTTTTCA+CGG + chr2_4:55679373-55679392 None:intergenic 25.0%
! TGAAAAAATTAGCTATCGAT+TGG - chr2_4:55679373-55679392 Msa0336300:CDS 25.0%
!! GAAAAAATTAGCTATCGATT+GGG - chr2_4:55679374-55679393 Msa0336300:CDS 25.0%
!! AAAAAATTAGCTATCGATTG+GGG - chr2_4:55679375-55679394 Msa0336300:CDS 25.0%
! TTATATGTTCATTTGTGATC+TGG - chr2_4:55679812-55679831 Msa0336300:intron 25.0%
! TGGGAAAAGTAAAATCAAAT+GGG + chr2_4:55680623-55680642 None:intergenic 25.0%
! ATGGGAAAAGTAAAATCAAA+TGG + chr2_4:55680624-55680643 None:intergenic 25.0%
! TCCCATTGAATATAACAATT+TGG - chr2_4:55680638-55680657 Msa0336300:five_prime_UTR 25.0%
! CTCCAAATTGTTATATTCAA+TGG + chr2_4:55680643-55680662 None:intergenic 25.0%
! CATTGAATATAACAATTTGG+AGG - chr2_4:55680641-55680660 Msa0336300:five_prime_UTR 25.0%
! ATATTGTTAATAATGCCCAT+TGG - chr2_4:55680605-55680624 Msa0336300:five_prime_UTR 25.0%
!! CTTATTTGGTTCCTATATAA+TGG - chr2_4:55680822-55680841 Msa0336300:five_prime_UTR 25.0%
! AATTCTACAACCCATTATAT+AGG + chr2_4:55680836-55680855 None:intergenic 25.0%
! TAGAATTAAAGACATGATAG+TGG - chr2_4:55680849-55680868 Msa0336300:five_prime_UTR 25.0%
!! TGCAAAATATTTTTCCAACT+TGG + chr2_4:55680911-55680930 None:intergenic 25.0%
!!! TCATTTTTGAAGAGTTTTGA+TGG - chr2_4:55680971-55680990 Msa0336300:five_prime_UTR 25.0%
AACAATTCAACTTTGGTTGT+GGG + chr2_4:55678846-55678865 None:intergenic 30.0%
TAACAATTCAACTTTGGTTG+TGG + chr2_4:55678847-55678866 None:intergenic 30.0%
!!! TTCTTCTCGTGATTTTTTTC+TGG - chr2_4:55678987-55679006 Msa0336300:three_prime_UTR 30.0%
CAGATCAAACTAACAACTAA+CGG + chr2_4:55679070-55679089 None:intergenic 30.0%
! TAGTTGTTAGTTTGATCTGA+CGG - chr2_4:55679071-55679090 Msa0336300:three_prime_UTR 30.0%
!!! AATGTTTTAATCGTATCCGT+AGG - chr2_4:55679134-55679153 Msa0336300:three_prime_UTR 30.0%
ATCATCTTCGTAATCGTAAT+CGG + chr2_4:55679313-55679332 None:intergenic 30.0%
!!! TCGATAGCTAATTTTTTCAC+GGG + chr2_4:55679372-55679391 None:intergenic 30.0%
!! GTGTTCATTTGATTTTCTGA+AGG - chr2_4:55679527-55679546 Msa0336300:CDS 30.0%
! TGATTCTATTTGAGATGATC+TGG - chr2_4:55679718-55679737 Msa0336300:intron 30.0%
ATTGACCATTTGAGGAATTT+GGG - chr2_4:55680353-55680372 Msa0336300:CDS 30.0%
TGATCTTAACATCCATCATA+AGG - chr2_4:55680409-55680428 Msa0336300:five_prime_UTR 30.0%
TACACTATACTACTATCTGA+TGG - chr2_4:55680719-55680738 Msa0336300:five_prime_UTR 30.0%
! TATTCTTCTGCTTATGGTTT+TGG - chr2_4:55681027-55681046 Msa0336300:five_prime_UTR 30.0%
AACAATTCAACTTTGGTTGT+GGG + chr2_4:55678846-55678865 None:intergenic 30.0%
TAACAATTCAACTTTGGTTG+TGG + chr2_4:55678847-55678866 None:intergenic 30.0%
!!! TTCTTCTCGTGATTTTTTTC+TGG - chr2_4:55678987-55679006 Msa0336300:three_prime_UTR 30.0%
CAGATCAAACTAACAACTAA+CGG + chr2_4:55679070-55679089 None:intergenic 30.0%
! TAGTTGTTAGTTTGATCTGA+CGG - chr2_4:55679071-55679090 Msa0336300:three_prime_UTR 30.0%
!!! AATGTTTTAATCGTATCCGT+AGG - chr2_4:55679134-55679153 Msa0336300:three_prime_UTR 30.0%
ATCATCTTCGTAATCGTAAT+CGG + chr2_4:55679313-55679332 None:intergenic 30.0%
!!! TCGATAGCTAATTTTTTCAC+GGG + chr2_4:55679372-55679391 None:intergenic 30.0%
!! GTGTTCATTTGATTTTCTGA+AGG - chr2_4:55679527-55679546 Msa0336300:CDS 30.0%
! TGATTCTATTTGAGATGATC+TGG - chr2_4:55679718-55679737 Msa0336300:intron 30.0%
ATTGACCATTTGAGGAATTT+GGG - chr2_4:55680353-55680372 Msa0336300:CDS 30.0%
TGATCTTAACATCCATCATA+AGG - chr2_4:55680409-55680428 Msa0336300:five_prime_UTR 30.0%
TACACTATACTACTATCTGA+TGG - chr2_4:55680719-55680738 Msa0336300:five_prime_UTR 30.0%
! TATTCTTCTGCTTATGGTTT+TGG - chr2_4:55681027-55681046 Msa0336300:five_prime_UTR 30.0%
ACGAAAGGGAAGATAACAAA+GGG + chr2_4:55678706-55678725 None:intergenic 35.0%
!! GAAAAGTGTTTGAGACGAAA+GGG + chr2_4:55678720-55678739 None:intergenic 35.0%
!! AGAAAAGTGTTTGAGACGAA+AGG + chr2_4:55678721-55678740 None:intergenic 35.0%
ACGGTGCTTGATGTAATAAA+GGG + chr2_4:55678781-55678800 None:intergenic 35.0%
ATCAAACTAACAACTAACGG+TGG + chr2_4:55679067-55679086 None:intergenic 35.0%
TTGTGTACAGCTGGATAAAA+AGG + chr2_4:55679103-55679122 None:intergenic 35.0%
TCATTTCACATGATAGCCAT+TGG + chr2_4:55679175-55679194 None:intergenic 35.0%
CAAGCTTCAACAATCATCAA+TGG - chr2_4:55679266-55679285 Msa0336300:CDS 35.0%
AAAAACCTTCAGATCTCGAA+TGG + chr2_4:55679452-55679471 None:intergenic 35.0%
!! CGTTGATTCGTTATCATATG+CGG - chr2_4:55679505-55679524 Msa0336300:CDS 35.0%
AAAAACCTTCAGATCTCGAA+TGG + chr2_4:55679452-55679471 None:intergenic 35.0%
!! CGTTGATTCGTTATCATATG+CGG - chr2_4:55679505-55679524 Msa0336300:CDS 35.0%
ACGTCTTAATGATCTACATC+TGG - chr2_4:55679959-55679978 Msa0336300:intron 35.0%
TGATCTACATCTGGTAGATA+AGG - chr2_4:55679968-55679987 Msa0336300:intron 35.0%
AATTCCTTTGAATGCGCAAA+AGG + chr2_4:55680002-55680021 None:intergenic 35.0%
TGATAAGTGCATTGAAGTCT+TGG - chr2_4:55680028-55680047 Msa0336300:intron 35.0%
! GCTAAGTCCATGTATGTTTT+GGG - chr2_4:55680050-55680069 Msa0336300:intron 35.0%
! CTAAGTCCATGTATGTTTTG+GGG - chr2_4:55680051-55680070 Msa0336300:intron 35.0%
TGATACCTCTGTAGACTATT+CGG - chr2_4:55680124-55680143 Msa0336300:intron 35.0%
! TCAATCTGAAGTAGATGTTG+AGG - chr2_4:55680235-55680254 Msa0336300:intron 35.0%
CATTGACCATTTGAGGAATT+TGG - chr2_4:55680352-55680371 Msa0336300:CDS 35.0%
AACTTCCCAAATTCCTCAAA+TGG + chr2_4:55680361-55680380 None:intergenic 35.0%
ATTTGAGGAATTTGGGAAGT+TGG - chr2_4:55680360-55680379 Msa0336300:CDS 35.0%
TTTGAGGAATTTGGGAAGTT+GGG - chr2_4:55680361-55680380 Msa0336300:CDS 35.0%
TCTTGTACATCTCCTTATGA+TGG + chr2_4:55680424-55680443 None:intergenic 35.0%
AGAAAAGGTGAGAAACAACA+CGG + chr2_4:55680447-55680466 None:intergenic 35.0%
ATTGTCCTCATCAAGAGAAA+AGG + chr2_4:55680462-55680481 None:intergenic 35.0%
! TTCTTCTTTTCCTCTTCCTT+TGG + chr2_4:55680494-55680513 None:intergenic 35.0%
GTTGCAAACAAAGCAAAAAG+GGG + chr2_4:55680675-55680694 None:intergenic 35.0%
CGTTGCAAACAAAGCAAAAA+GGG + chr2_4:55680676-55680695 None:intergenic 35.0%
ACGTTGCAAACAAAGCAAAA+AGG + chr2_4:55680677-55680696 None:intergenic 35.0%
!! TTGCTTTGTTTGCAACGTTT+AGG - chr2_4:55680679-55680698 Msa0336300:five_prime_UTR 35.0%
!! TTTAGGTGGATTTTGCTTGT+TGG - chr2_4:55680696-55680715 Msa0336300:five_prime_UTR 35.0%
!! CTACTATCTGATGGTGTTAT+AGG - chr2_4:55680728-55680747 Msa0336300:five_prime_UTR 35.0%
!! GGTATTCTGAAACGCTTATT+TGG - chr2_4:55680808-55680827 Msa0336300:five_prime_UTR 35.0%
GGTCATTATTCTTCTGCTTA+TGG - chr2_4:55681021-55681040 Msa0336300:five_prime_UTR 35.0%
ACGAAAGGGAAGATAACAAA+GGG + chr2_4:55678706-55678725 None:intergenic 35.0%
!! GAAAAGTGTTTGAGACGAAA+GGG + chr2_4:55678720-55678739 None:intergenic 35.0%
!! AGAAAAGTGTTTGAGACGAA+AGG + chr2_4:55678721-55678740 None:intergenic 35.0%
ACGGTGCTTGATGTAATAAA+GGG + chr2_4:55678781-55678800 None:intergenic 35.0%
ATCAAACTAACAACTAACGG+TGG + chr2_4:55679067-55679086 None:intergenic 35.0%
TTGTGTACAGCTGGATAAAA+AGG + chr2_4:55679103-55679122 None:intergenic 35.0%
TCATTTCACATGATAGCCAT+TGG + chr2_4:55679175-55679194 None:intergenic 35.0%
CAAGCTTCAACAATCATCAA+TGG - chr2_4:55679266-55679285 Msa0336300:CDS 35.0%
AAAAACCTTCAGATCTCGAA+TGG + chr2_4:55679452-55679471 None:intergenic 35.0%
!! CGTTGATTCGTTATCATATG+CGG - chr2_4:55679505-55679524 Msa0336300:CDS 35.0%
AAAAACCTTCAGATCTCGAA+TGG + chr2_4:55679452-55679471 None:intergenic 35.0%
!! CGTTGATTCGTTATCATATG+CGG - chr2_4:55679505-55679524 Msa0336300:CDS 35.0%
ACGTCTTAATGATCTACATC+TGG - chr2_4:55679959-55679978 Msa0336300:intron 35.0%
TGATCTACATCTGGTAGATA+AGG - chr2_4:55679968-55679987 Msa0336300:intron 35.0%
AATTCCTTTGAATGCGCAAA+AGG + chr2_4:55680002-55680021 None:intergenic 35.0%
TGATAAGTGCATTGAAGTCT+TGG - chr2_4:55680028-55680047 Msa0336300:intron 35.0%
! GCTAAGTCCATGTATGTTTT+GGG - chr2_4:55680050-55680069 Msa0336300:intron 35.0%
! CTAAGTCCATGTATGTTTTG+GGG - chr2_4:55680051-55680070 Msa0336300:intron 35.0%
TGATACCTCTGTAGACTATT+CGG - chr2_4:55680124-55680143 Msa0336300:intron 35.0%
! TCAATCTGAAGTAGATGTTG+AGG - chr2_4:55680235-55680254 Msa0336300:intron 35.0%
CATTGACCATTTGAGGAATT+TGG - chr2_4:55680352-55680371 Msa0336300:CDS 35.0%
AACTTCCCAAATTCCTCAAA+TGG + chr2_4:55680361-55680380 None:intergenic 35.0%
ATTTGAGGAATTTGGGAAGT+TGG - chr2_4:55680360-55680379 Msa0336300:CDS 35.0%
TTTGAGGAATTTGGGAAGTT+GGG - chr2_4:55680361-55680380 Msa0336300:CDS 35.0%
TCTTGTACATCTCCTTATGA+TGG + chr2_4:55680424-55680443 None:intergenic 35.0%
AGAAAAGGTGAGAAACAACA+CGG + chr2_4:55680447-55680466 None:intergenic 35.0%
ATTGTCCTCATCAAGAGAAA+AGG + chr2_4:55680462-55680481 None:intergenic 35.0%
! TTCTTCTTTTCCTCTTCCTT+TGG + chr2_4:55680494-55680513 None:intergenic 35.0%
GTTGCAAACAAAGCAAAAAG+GGG + chr2_4:55680675-55680694 None:intergenic 35.0%
CGTTGCAAACAAAGCAAAAA+GGG + chr2_4:55680676-55680695 None:intergenic 35.0%
ACGTTGCAAACAAAGCAAAA+AGG + chr2_4:55680677-55680696 None:intergenic 35.0%
!! TTGCTTTGTTTGCAACGTTT+AGG - chr2_4:55680679-55680698 Msa0336300:five_prime_UTR 35.0%
!! TTTAGGTGGATTTTGCTTGT+TGG - chr2_4:55680696-55680715 Msa0336300:five_prime_UTR 35.0%
!! CTACTATCTGATGGTGTTAT+AGG - chr2_4:55680728-55680747 Msa0336300:five_prime_UTR 35.0%
!! GGTATTCTGAAACGCTTATT+TGG - chr2_4:55680808-55680827 Msa0336300:five_prime_UTR 35.0%
GGTCATTATTCTTCTGCTTA+TGG - chr2_4:55681021-55681040 Msa0336300:five_prime_UTR 35.0%
AGAAGAGACGAGGTTATGTT+TGG + chr2_4:55678646-55678665 None:intergenic 40.0%
TTTAGCGCTTAGGGTTATAC+AGG + chr2_4:55678679-55678698 None:intergenic 40.0%
AAAGGGAAGATAACAAAGGG+AGG + chr2_4:55678703-55678722 None:intergenic 40.0%
GACGAAAGGGAAGATAACAA+AGG + chr2_4:55678707-55678726 None:intergenic 40.0%
TCTCTTTCTTCTTCCTCTGA+TGG - chr2_4:55678740-55678759 Msa0336300:intron 40.0%
CTTGATGTAATAAAGGGTGG+TGG + chr2_4:55678775-55678794 None:intergenic 40.0%
GTGCTTGATGTAATAAAGGG+TGG + chr2_4:55678778-55678797 None:intergenic 40.0%
CACGGTGCTTGATGTAATAA+AGG + chr2_4:55678782-55678801 None:intergenic 40.0%
! TTAGTTTGATCTGACGGCTT+AGG - chr2_4:55679077-55679096 Msa0336300:three_prime_UTR 40.0%
GATCTCACAGCTAAAACCTA+CGG + chr2_4:55679153-55679172 None:intergenic 40.0%
!!! GTTTTAGCTGTGAGATCCAA+TGG - chr2_4:55679156-55679175 Msa0336300:exon 40.0%
! GTAATCGTAATCGGTTTCCA+CGG + chr2_4:55679304-55679323 None:intergenic 40.0%
TGATTCCATTCGAGATCTGA+AGG - chr2_4:55679444-55679463 Msa0336300:CDS 40.0%
TGATTCCATTCGAGATCTGA+AGG - chr2_4:55679444-55679463 Msa0336300:CDS 40.0%
! ACATCCTTTTGCGCATTCAA+AGG - chr2_4:55679995-55680014 Msa0336300:intron 40.0%
! GGCTAAGTCCATGTATGTTT+TGG - chr2_4:55680049-55680068 Msa0336300:intron 40.0%
GATACCTCTGTAGACTATTC+GGG - chr2_4:55680125-55680144 Msa0336300:intron 40.0%
ATACCTCTGTAGACTATTCG+GGG - chr2_4:55680126-55680145 Msa0336300:intron 40.0%
TATTCGGGGGAACTTGATTT+GGG - chr2_4:55680140-55680159 Msa0336300:intron 40.0%
TTTGGGGGAACAATCTGATA+AGG - chr2_4:55680157-55680176 Msa0336300:intron 40.0%
! ATCTGAAGTAGATGTTGAGG+AGG - chr2_4:55680238-55680257 Msa0336300:intron 40.0%
!! GGAGGCATTTGATAACTCTA+AGG - chr2_4:55680256-55680275 Msa0336300:intron 40.0%
AGGAGCAGTATGAAGATGAT+TGG - chr2_4:55680276-55680295 Msa0336300:intron 40.0%
GGAGCAGTATGAAGATGATT+GGG - chr2_4:55680277-55680296 Msa0336300:intron 40.0%
TGAAGATGATTGGGAGGTTA+TGG - chr2_4:55680286-55680305 Msa0336300:intron 40.0%
AGTCATCATTCTCCATGAGT+TGG + chr2_4:55680388-55680407 None:intergenic 40.0%
! TCTCACCTTTTCTCTTGATG+AGG - chr2_4:55680454-55680473 Msa0336300:five_prime_UTR 40.0%
GGACAATAAGAAAGCTCCAA+AGG - chr2_4:55680475-55680494 Msa0336300:five_prime_UTR 40.0%
TAAGAAAGCTCCAAAGGAAG+AGG - chr2_4:55680481-55680500 Msa0336300:five_prime_UTR 40.0%
GGAAGAGGAAAAGAAGAAAG+AGG - chr2_4:55680496-55680515 Msa0336300:five_prime_UTR 40.0%
AGGACTGAAGAAAACTGTAG+AGG - chr2_4:55680516-55680535 Msa0336300:five_prime_UTR 40.0%
TGTAGAGGACAAGAAGAAAC+AGG - chr2_4:55680531-55680550 Msa0336300:five_prime_UTR 40.0%
! CTTTGTTTGCAACGTTTAGG+TGG - chr2_4:55680682-55680701 Msa0336300:five_prime_UTR 40.0%
! TTTTCCAACTTGGACACTAC+TGG + chr2_4:55680901-55680920 None:intergenic 40.0%
AGAAGAGACGAGGTTATGTT+TGG + chr2_4:55678646-55678665 None:intergenic 40.0%
TTTAGCGCTTAGGGTTATAC+AGG + chr2_4:55678679-55678698 None:intergenic 40.0%
AAAGGGAAGATAACAAAGGG+AGG + chr2_4:55678703-55678722 None:intergenic 40.0%
GACGAAAGGGAAGATAACAA+AGG + chr2_4:55678707-55678726 None:intergenic 40.0%
TCTCTTTCTTCTTCCTCTGA+TGG - chr2_4:55678740-55678759 Msa0336300:intron 40.0%
CTTGATGTAATAAAGGGTGG+TGG + chr2_4:55678775-55678794 None:intergenic 40.0%
GTGCTTGATGTAATAAAGGG+TGG + chr2_4:55678778-55678797 None:intergenic 40.0%
CACGGTGCTTGATGTAATAA+AGG + chr2_4:55678782-55678801 None:intergenic 40.0%
! TTAGTTTGATCTGACGGCTT+AGG - chr2_4:55679077-55679096 Msa0336300:three_prime_UTR 40.0%
GATCTCACAGCTAAAACCTA+CGG + chr2_4:55679153-55679172 None:intergenic 40.0%
!!! GTTTTAGCTGTGAGATCCAA+TGG - chr2_4:55679156-55679175 Msa0336300:exon 40.0%
! GTAATCGTAATCGGTTTCCA+CGG + chr2_4:55679304-55679323 None:intergenic 40.0%
TGATTCCATTCGAGATCTGA+AGG - chr2_4:55679444-55679463 Msa0336300:CDS 40.0%
TGATTCCATTCGAGATCTGA+AGG - chr2_4:55679444-55679463 Msa0336300:CDS 40.0%
! ACATCCTTTTGCGCATTCAA+AGG - chr2_4:55679995-55680014 Msa0336300:intron 40.0%
! GGCTAAGTCCATGTATGTTT+TGG - chr2_4:55680049-55680068 Msa0336300:intron 40.0%
GATACCTCTGTAGACTATTC+GGG - chr2_4:55680125-55680144 Msa0336300:intron 40.0%
ATACCTCTGTAGACTATTCG+GGG - chr2_4:55680126-55680145 Msa0336300:intron 40.0%
TATTCGGGGGAACTTGATTT+GGG - chr2_4:55680140-55680159 Msa0336300:intron 40.0%
TTTGGGGGAACAATCTGATA+AGG - chr2_4:55680157-55680176 Msa0336300:intron 40.0%
! ATCTGAAGTAGATGTTGAGG+AGG - chr2_4:55680238-55680257 Msa0336300:intron 40.0%
!! GGAGGCATTTGATAACTCTA+AGG - chr2_4:55680256-55680275 Msa0336300:intron 40.0%
AGGAGCAGTATGAAGATGAT+TGG - chr2_4:55680276-55680295 Msa0336300:intron 40.0%
GGAGCAGTATGAAGATGATT+GGG - chr2_4:55680277-55680296 Msa0336300:intron 40.0%
TGAAGATGATTGGGAGGTTA+TGG - chr2_4:55680286-55680305 Msa0336300:intron 40.0%
AGTCATCATTCTCCATGAGT+TGG + chr2_4:55680388-55680407 None:intergenic 40.0%
! TCTCACCTTTTCTCTTGATG+AGG - chr2_4:55680454-55680473 Msa0336300:five_prime_UTR 40.0%
GGACAATAAGAAAGCTCCAA+AGG - chr2_4:55680475-55680494 Msa0336300:five_prime_UTR 40.0%
TAAGAAAGCTCCAAAGGAAG+AGG - chr2_4:55680481-55680500 Msa0336300:five_prime_UTR 40.0%
GGAAGAGGAAAAGAAGAAAG+AGG - chr2_4:55680496-55680515 Msa0336300:five_prime_UTR 40.0%
AGGACTGAAGAAAACTGTAG+AGG - chr2_4:55680516-55680535 Msa0336300:five_prime_UTR 40.0%
TGTAGAGGACAAGAAGAAAC+AGG - chr2_4:55680531-55680550 Msa0336300:five_prime_UTR 40.0%
! CTTTGTTTGCAACGTTTAGG+TGG - chr2_4:55680682-55680701 Msa0336300:five_prime_UTR 40.0%
! TTTTCCAACTTGGACACTAC+TGG + chr2_4:55680901-55680920 None:intergenic 40.0%
TATCTACGGTTGTGTACAGC+TGG + chr2_4:55679112-55679131 None:intergenic 45.0%
TCACGGGAGACTTAGATCTA+CGG + chr2_4:55679356-55679375 None:intergenic 45.0%
!!! AGTCCATGTATGTTTTGGGG+TGG - chr2_4:55680054-55680073 Msa0336300:intron 45.0%
TACCTCTGTAGACTATTCGG+GGG - chr2_4:55680127-55680146 Msa0336300:intron 45.0%
CTATTCGGGGGAACTTGATT+TGG - chr2_4:55680139-55680158 Msa0336300:intron 45.0%
! ATTCGGGGGAACTTGATTTG+GGG - chr2_4:55680141-55680160 Msa0336300:intron 45.0%
! TCTGATACCTCTGAAGACTC+TGG - chr2_4:55680188-55680207 Msa0336300:intron 45.0%
GATTGATCTCCCTCCTCAAA+TGG + chr2_4:55680221-55680240 None:intergenic 45.0%
GCAGTATGAAGATGATTGGG+AGG - chr2_4:55680280-55680299 Msa0336300:intron 45.0%
! TGCGTTGCATTGACCATTTG+AGG - chr2_4:55680345-55680364 Msa0336300:CDS 45.0%
GACAAGAAGAAACAGGACCT+GGG - chr2_4:55680538-55680557 Msa0336300:five_prime_UTR 45.0%
TCATCCAGTAGTGTCCAAGT+TGG - chr2_4:55680894-55680913 Msa0336300:five_prime_UTR 45.0%
TATCTACGGTTGTGTACAGC+TGG + chr2_4:55679112-55679131 None:intergenic 45.0%
TCACGGGAGACTTAGATCTA+CGG + chr2_4:55679356-55679375 None:intergenic 45.0%
!!! AGTCCATGTATGTTTTGGGG+TGG - chr2_4:55680054-55680073 Msa0336300:intron 45.0%
TACCTCTGTAGACTATTCGG+GGG - chr2_4:55680127-55680146 Msa0336300:intron 45.0%
CTATTCGGGGGAACTTGATT+TGG - chr2_4:55680139-55680158 Msa0336300:intron 45.0%
! ATTCGGGGGAACTTGATTTG+GGG - chr2_4:55680141-55680160 Msa0336300:intron 45.0%
! TCTGATACCTCTGAAGACTC+TGG - chr2_4:55680188-55680207 Msa0336300:intron 45.0%
GATTGATCTCCCTCCTCAAA+TGG + chr2_4:55680221-55680240 None:intergenic 45.0%
GCAGTATGAAGATGATTGGG+AGG - chr2_4:55680280-55680299 Msa0336300:intron 45.0%
! TGCGTTGCATTGACCATTTG+AGG - chr2_4:55680345-55680364 Msa0336300:CDS 45.0%
GACAAGAAGAAACAGGACCT+GGG - chr2_4:55680538-55680557 Msa0336300:five_prime_UTR 45.0%
TCATCCAGTAGTGTCCAAGT+TGG - chr2_4:55680894-55680913 Msa0336300:five_prime_UTR 45.0%
AGGGTTATACAGGAGAGGAG+AGG + chr2_4:55678669-55678688 None:intergenic 50.0%
CGCTTAGGGTTATACAGGAG+AGG + chr2_4:55678674-55678693 None:intergenic 50.0%
! AAGGGAGGCTTTAGCGCTTA+GGG + chr2_4:55678688-55678707 None:intergenic 50.0%
! AAAGGGAGGCTTTAGCGCTT+AGG + chr2_4:55678689-55678708 None:intergenic 50.0%
GTGGTAACTGTTGCCATCAG+AGG + chr2_4:55678756-55678775 None:intergenic 50.0%
AATGGCGTCATCTTCTTCCG+TGG - chr2_4:55679284-55679303 Msa0336300:CDS 50.0%
CTACGGTGTGAAACACGCTT+AGG + chr2_4:55679339-55679358 None:intergenic 50.0%
CAGCCACCCCAAAACATACA+TGG + chr2_4:55680060-55680079 None:intergenic 50.0%
AAAAAGCCGACGACGATGCT+TGG - chr2_4:55680084-55680103 Msa0336300:intron 50.0%
AAAAGCCGACGACGATGCTT+GGG - chr2_4:55680085-55680104 Msa0336300:intron 50.0%
! CTTATCCCAAGCATCGTCGT+CGG + chr2_4:55680093-55680112 None:intergenic 50.0%
TTCCCCCGAATAGTCTACAG+AGG + chr2_4:55680132-55680151 None:intergenic 50.0%
!! TTCGGGGGAACTTGATTTGG+GGG - chr2_4:55680142-55680161 Msa0336300:intron 50.0%
! TACCTCTGAAGACTCTGGAG+AGG - chr2_4:55680193-55680212 Msa0336300:intron 50.0%
TTCCTCTCCAGAGTCTTCAG+AGG + chr2_4:55680198-55680217 None:intergenic 50.0%
! CTCTGGAGAGGAACCATTTG+AGG - chr2_4:55680205-55680224 Msa0336300:intron 50.0%
TGGAGAGGAACCATTTGAGG+AGG - chr2_4:55680208-55680227 Msa0336300:intron 50.0%
GGAGAGGAACCATTTGAGGA+GGG - chr2_4:55680209-55680228 Msa0336300:intron 50.0%
TTGGGAGGTTATGGCTGAGA+AGG - chr2_4:55680295-55680314 Msa0336300:CDS 50.0%
TGGGAGGTTATGGCTGAGAA+GGG - chr2_4:55680296-55680315 Msa0336300:CDS 50.0%
GGACAAGAAGAAACAGGACC+TGG - chr2_4:55680537-55680556 Msa0336300:five_prime_UTR 50.0%
AGGGTTATACAGGAGAGGAG+AGG + chr2_4:55678669-55678688 None:intergenic 50.0%
CGCTTAGGGTTATACAGGAG+AGG + chr2_4:55678674-55678693 None:intergenic 50.0%
! AAGGGAGGCTTTAGCGCTTA+GGG + chr2_4:55678688-55678707 None:intergenic 50.0%
! AAAGGGAGGCTTTAGCGCTT+AGG + chr2_4:55678689-55678708 None:intergenic 50.0%
GTGGTAACTGTTGCCATCAG+AGG + chr2_4:55678756-55678775 None:intergenic 50.0%
AATGGCGTCATCTTCTTCCG+TGG - chr2_4:55679284-55679303 Msa0336300:CDS 50.0%
CTACGGTGTGAAACACGCTT+AGG + chr2_4:55679339-55679358 None:intergenic 50.0%
CAGCCACCCCAAAACATACA+TGG + chr2_4:55680060-55680079 None:intergenic 50.0%
AAAAAGCCGACGACGATGCT+TGG - chr2_4:55680084-55680103 Msa0336300:intron 50.0%
AAAAGCCGACGACGATGCTT+GGG - chr2_4:55680085-55680104 Msa0336300:intron 50.0%
! CTTATCCCAAGCATCGTCGT+CGG + chr2_4:55680093-55680112 None:intergenic 50.0%
TTCCCCCGAATAGTCTACAG+AGG + chr2_4:55680132-55680151 None:intergenic 50.0%
!! TTCGGGGGAACTTGATTTGG+GGG - chr2_4:55680142-55680161 Msa0336300:intron 50.0%
! TACCTCTGAAGACTCTGGAG+AGG - chr2_4:55680193-55680212 Msa0336300:intron 50.0%
TTCCTCTCCAGAGTCTTCAG+AGG + chr2_4:55680198-55680217 None:intergenic 50.0%
! CTCTGGAGAGGAACCATTTG+AGG - chr2_4:55680205-55680224 Msa0336300:intron 50.0%
TGGAGAGGAACCATTTGAGG+AGG - chr2_4:55680208-55680227 Msa0336300:intron 50.0%
GGAGAGGAACCATTTGAGGA+GGG - chr2_4:55680209-55680228 Msa0336300:intron 50.0%
TTGGGAGGTTATGGCTGAGA+AGG - chr2_4:55680295-55680314 Msa0336300:CDS 50.0%
TGGGAGGTTATGGCTGAGAA+GGG - chr2_4:55680296-55680315 Msa0336300:CDS 50.0%
GGACAAGAAGAAACAGGACC+TGG - chr2_4:55680537-55680556 Msa0336300:five_prime_UTR 50.0%
AGAGGAGAGGAGAAGAGACG+AGG + chr2_4:55678656-55678675 None:intergenic 55.0%
CGACGACGATGCTTGGGATA+AGG - chr2_4:55680091-55680110 Msa0336300:intron 55.0%
GGGAGGTTATGGCTGAGAAG+GGG - chr2_4:55680297-55680316 Msa0336300:CDS 55.0%
GGAGGTTATGGCTGAGAAGG+GGG - chr2_4:55680298-55680317 Msa0336300:CDS 55.0%
GGGAAGTTGGGACCAACTCA+TGG - chr2_4:55680373-55680392 Msa0336300:CDS 55.0%
CTCACACTGTGCTATCACCC+AGG + chr2_4:55680558-55680577 None:intergenic 55.0%
AGAGGAGAGGAGAAGAGACG+AGG + chr2_4:55678656-55678675 None:intergenic 55.0%
CGACGACGATGCTTGGGATA+AGG - chr2_4:55680091-55680110 Msa0336300:intron 55.0%
GGGAGGTTATGGCTGAGAAG+GGG - chr2_4:55680297-55680316 Msa0336300:CDS 55.0%
GGAGGTTATGGCTGAGAAGG+GGG - chr2_4:55680298-55680317 Msa0336300:CDS 55.0%
GGGAAGTTGGGACCAACTCA+TGG - chr2_4:55680373-55680392 Msa0336300:CDS 55.0%
CTCACACTGTGCTATCACCC+AGG + chr2_4:55680558-55680577 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55678620 55681067 55678620 ID=Msa0336300;Name=Msa0336300
chr2_4 mRNA 55678620 55681067 55678620 ID=Msa0336300-mRNA-1;Parent=Msa0336300;Name=Msa0336300-mRNA-1;_AED=0.11;_eAED=0.11;_QI=665|1|1|1|0.5|0.33|3|389|226
chr2_4 exon 55678620 55678702 55678620 ID=Msa0336300-mRNA-1:exon:16888;Parent=Msa0336300-mRNA-1
chr2_4 exon 55678858 55679732 55678858 ID=Msa0336300-mRNA-1:exon:16887;Parent=Msa0336300-mRNA-1
chr2_4 exon 55680291 55681067 55680291 ID=Msa0336300-mRNA-1:exon:16886;Parent=Msa0336300-mRNA-1
chr2_4 five_prime_UTR 55680403 55681067 55680403 ID=Msa0336300-mRNA-1:five_prime_utr;Parent=Msa0336300-mRNA-1
chr2_4 CDS 55680291 55680402 55680291 ID=Msa0336300-mRNA-1:cds;Parent=Msa0336300-mRNA-1
chr2_4 CDS 55679164 55679732 55679164 ID=Msa0336300-mRNA-1:cds;Parent=Msa0336300-mRNA-1
chr2_4 three_prime_UTR 55678858 55679163 55678858 ID=Msa0336300-mRNA-1:three_prime_utr;Parent=Msa0336300-mRNA-1
chr2_4 three_prime_UTR 55678620 55678702 55678620 ID=Msa0336300-mRNA-1:three_prime_utr;Parent=Msa0336300-mRNA-1
Gene Sequence

>Msa0336300

ATGGCGTCATCTTCTTCCGTGGAAACCGATTACGATTACGAAGATGATTTTCCTAAGCGTGTTTCACACCGTAGATCTAAGTCTCCCGTGAAAAAATTAGCTATCGATTGGGGTGCACGTCTTAATGATCTACATCTGGTAGATAAGGATCTACATCCTTTTGCGCATTCAAAGGAATTGTATCGTGATAAGTGCATTGAAGTCTTGGCTAAGTCCATGTATGTTTTGGGGTGGCTGCGTGAAAAAGCCGACGACGATGCTTGGGATAAGGTATCTGACTCTGATACCTCTGTAGACTATTCGGGGGAACTTGATTTGGGGGAACAATCTGATAAGGAATATGACTCTGATACCTCTGAAGACTCTGGAGAGGAACCATTTGAGGAGGGAGATCAATCTGAAGTAGATGTTGAGGAGGCATTTGATAACTCTAAGGAGCAGTATGAAGATGATTGGGAGGTTATGGCTGAGAAGGGGGTTTTTCACTGCAGAGATGATGTGTTGCGTTGCATTGACCATTTGAGGAATTTGGGAAGTTGGGACCAACTCATGGAGAATGATGACTATGATCTTAACATCCATCATAAGGAGATGTACAAGACCGTGTTGTTTCTCACCTTTTCTCTTGATGAGGACAATAAGAAAGCTCCAAAGGAAGAGGAAAAGAAGAAAGAGGACTGA

Protein sequence

>Msa0336300

MASSSSVETDYDYEDDFPKRVSHRRSKSPVKKLAIDWGARLNDLHLVDKDLHPFAHSKELYRDKCIEVLAKSMYVLGWLREKADDDAWDKVSDSDTSVDYSGELDLGEQSDKEYDSDTSEDSGEEPFEEGDQSEVDVEEAFDNSKEQYEDDWEVMAEKGVFHCRDDVLRCIDHLRNLGSWDQLMENDDYDLNIHHKEMYKTVLFLTFSLDEDNKKAPKEEEKKKED*