AlfalfaGEDB | Msa0336300

M. sativa cultivar zhongmu-4 / Msa0336300

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007440	Msa0336300	0.821686	3.538438e-53	-8.615850e-47
Msa0014570	Msa0336300	0.807760	4.318771e-50	-8.615850e-47
Msa0020390	Msa0336300	0.801673	8.059386e-49	-8.615850e-47
Msa0021210	Msa0336300	0.814350	1.611231e-51	-8.615850e-47
Msa0043500	Msa0336300	0.809722	1.644369e-50	-8.615850e-47
Msa0044540	Msa0336300	-0.806945	6.429618e-50	-8.615850e-47
Msa0045340	Msa0336300	0.803145	4.009137e-49	-8.615850e-47
Msa0070170	Msa0336300	0.814025	1.900304e-51	-8.615850e-47
Msa0072720	Msa0336300	0.813585	2.375436e-51	-8.615850e-47
Msa0078640	Msa0336300	0.815548	8.738330e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 110 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGTAAAATCCAAT+GGG	0.521897	2_4:+55678897	None:intergenic
AAAAGCCGACGACGATGCTT+GGG	0.450005	2_4:-55679580	Msa0336300:CDS
AAAGGGAAGATAACAAAGGG+AGG	0.703136	2_4:+55680965	None:intergenic
AAAGGGAGGCTTTAGCGCTT+AGG	0.397593	2_4:+55680979	None:intergenic
AAATATGAATTATGTTTGGA+GGG	0.497454	2_4:+55680441	None:intergenic
AACAATTCAACTTTGGTTGT+GGG	0.426993	2_4:+55680822	None:intergenic
AACTTCCCAAATTCCTCAAA+TGG	0.460033	2_4:+55679307	None:intergenic
AAGGGAGGCTTTAGCGCTTA+GGG	0.435258	2_4:+55680980	None:intergenic
AATGGCGTCATCTTCTTCCG+TGG	0.589408	2_4:-55680381	Msa0336300:CDS
AATTCCTTTGAATGCGCAAA+AGG	0.451717	2_4:+55679666	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATTCAACTTTGGTTGT+GGG	+	chr2_4:55678846-55678865	None:intergenic	30.0%
TAACAATTCAACTTTGGTTG+TGG	+	chr2_4:55678847-55678866	None:intergenic	30.0%
CAGATCAAACTAACAACTAA+CGG	+	chr2_4:55679070-55679089	None:intergenic	30.0%
ATCATCTTCGTAATCGTAAT+CGG	+	chr2_4:55679313-55679332	None:intergenic	30.0%
ATTGACCATTTGAGGAATTT+GGG	-	chr2_4:55680353-55680372	Msa0336300:CDS	30.0%
TGATCTTAACATCCATCATA+AGG	-	chr2_4:55680409-55680428	Msa0336300:five_prime_UTR	30.0%
TACACTATACTACTATCTGA+TGG	-	chr2_4:55680719-55680738	Msa0336300:five_prime_UTR	30.0%
AACAATTCAACTTTGGTTGT+GGG	+	chr2_4:55678846-55678865	None:intergenic	30.0%
TAACAATTCAACTTTGGTTG+TGG	+	chr2_4:55678847-55678866	None:intergenic	30.0%
CAGATCAAACTAACAACTAA+CGG	+	chr2_4:55679070-55679089	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	55678620	55681067	55678620	ID=Msa0336300;Name=Msa0336300
chr2_4	mRNA	55678620	55681067	55678620	ID=Msa0336300-mRNA-1;Parent=Msa0336300;Name=Msa0336300-mRNA-1;_AED=0.11;_eAED=0.11;_QI=665\|1\|1\|1\|0.5\|0.33\|3\|389\|226
chr2_4	exon	55678620	55678702	55678620	ID=Msa0336300-mRNA-1:exon:16888;Parent=Msa0336300-mRNA-1
chr2_4	exon	55678858	55679732	55678858	ID=Msa0336300-mRNA-1:exon:16887;Parent=Msa0336300-mRNA-1
chr2_4	exon	55680291	55681067	55680291	ID=Msa0336300-mRNA-1:exon:16886;Parent=Msa0336300-mRNA-1
chr2_4	five_prime_UTR	55680403	55681067	55680403	ID=Msa0336300-mRNA-1:five_prime_utr;Parent=Msa0336300-mRNA-1
chr2_4	CDS	55680291	55680402	55680291	ID=Msa0336300-mRNA-1:cds;Parent=Msa0336300-mRNA-1
chr2_4	CDS	55679164	55679732	55679164	ID=Msa0336300-mRNA-1:cds;Parent=Msa0336300-mRNA-1
chr2_4	three_prime_UTR	55678858	55679163	55678858	ID=Msa0336300-mRNA-1:three_prime_utr;Parent=Msa0336300-mRNA-1
chr2_4	three_prime_UTR	55678620	55678702	55678620	ID=Msa0336300-mRNA-1:three_prime_utr;Parent=Msa0336300-mRNA-1

Gene Sequence

>Msa0336300

ATGGCGTCATCTTCTTCCGTGGAAACCGATTACGATTACGAAGATGATTTTCCTAAGCGTGTTTCACACCGTAGATCTAAGTCTCCCGTGAAAAAATTAGCTATCGATTGGGGTGCACGTCTTAATGATCTACATCTGGTAGATAAGGATCTACATCCTTTTGCGCATTCAAAGGAATTGTATCGTGATAAGTGCATTGAAGTCTTGGCTAAGTCCATGTATGTTTTGGGGTGGCTGCGTGAAAAAGCCGACGACGATGCTTGGGATAAGGTATCTGACTCTGATACCTCTGTAGACTATTCGGGGGAACTTGATTTGGGGGAACAATCTGATAAGGAATATGACTCTGATACCTCTGAAGACTCTGGAGAGGAACCATTTGAGGAGGGAGATCAATCTGAAGTAGATGTTGAGGAGGCATTTGATAACTCTAAGGAGCAGTATGAAGATGATTGGGAGGTTATGGCTGAGAAGGGGGTTTTTCACTGCAGAGATGATGTGTTGCGTTGCATTGACCATTTGAGGAATTTGGGAAGTTGGGACCAACTCATGGAGAATGATGACTATGATCTTAACATCCATCATAAGGAGATGTACAAGACCGTGTTGTTTCTCACCTTTTCTCTTGATGAGGACAATAAGAAAGCTCCAAAGGAAGAGGAAAAGAAGAAAGAGGACTGA

Protein sequence

>Msa0336300

MASSSSVETDYDYEDDFPKRVSHRRSKSPVKKLAIDWGARLNDLHLVDKDLHPFAHSKELYRDKCIEVLAKSMYVLGWLREKADDDAWDKVSDSDTSVDYSGELDLGEQSDKEYDSDTSEDSGEEPFEEGDQSEVDVEEAFDNSKEQYEDDWEVMAEKGVFHCRDDVLRCIDHLRNLGSWDQLMENDDYDLNIHHKEMYKTVLFLTFSLDEDNKKAPKEEEKKKED*