AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388040 MtrunA17_Chr3g0110201 86.857 350 36 4 200 539 3 352 0.0 550
Msa0388040 MtrunA17_Chr3g0110211 85.020 247 36 1 1 246 1 247 1.12e-146 426
Msa0388040 MtrunA17_Chr7g0236051 67.246 345 92 8 210 539 1 339 7.02e-123 364
Msa0388040 MtrunA17_Chr6g0465751 35.754 179 112 3 18 195 18 194 5.14e-30 124
Msa0388040 MtrunA17_Chr6g0465751 31.016 187 108 6 27 195 202 385 5.31e-14 74.7
Msa0388040 MtrunA17_Chr4g0044541 38.889 180 106 4 26 204 35 211 1.35e-29 123
Msa0388040 MtrunA17_Chr4g0044541 30.942 223 141 6 18 233 115 331 9.29e-18 86.7
Msa0388040 MtrunA17_Chr4g0044541 29.500 200 121 5 16 198 204 400 4.29e-16 81.6
Msa0388040 MtrunA17_Chr3g0134141 40.476 168 97 3 26 192 25 190 3.84e-29 121
Msa0388040 MtrunA17_Chr3g0134141 32.461 191 117 6 18 199 105 292 1.97e-14 76.3
Msa0388040 MtrunA17_Chr3g0134141 32.275 189 108 5 27 198 205 390 4.77e-14 75.1
Msa0388040 MtrunA17_Chr1g0153181 38.690 168 100 3 26 192 33 198 2.61e-28 119
Msa0388040 MtrunA17_Chr1g0153181 30.516 213 135 6 18 225 113 317 5.29e-17 84.3
Msa0388040 MtrunA17_Chr1g0153181 31.579 190 109 5 27 198 213 399 3.30e-15 78.6
Msa0388040 MtrunA17_Chr6g0466501 35.227 176 111 3 21 195 21 194 1.39e-27 117
Msa0388040 MtrunA17_Chr6g0466501 31.351 185 106 6 27 193 202 383 7.35e-14 74.3
Msa0388040 MtrunA17_Chr1g0201151 36.066 183 107 4 24 205 29 202 1.89e-27 116
Msa0388040 MtrunA17_Chr1g0201151 28.169 213 140 6 18 225 111 315 1.09e-15 80.1
Msa0388040 MtrunA17_Chr1g0201151 29.032 186 111 5 28 195 212 394 5.86e-14 74.7
Msa0388040 MtrunA17_Chr4g0070231 32.828 198 125 4 26 220 47 239 8.76e-27 112
Msa0388040 MtrunA17_Chr4g0070231 25.000 204 112 4 28 196 134 331 2.05e-12 68.9
Msa0388040 MtrunA17_Chr8g0344491 35.714 168 101 3 26 191 63 225 7.22e-26 110
Msa0388040 MtrunA17_Chr8g0344491 27.805 205 106 6 28 196 150 348 3.22e-13 71.6
Msa0388040 MtrunA17_Chr3g0139111 33.333 168 105 3 26 191 61 223 2.50e-25 108
Msa0388040 MtrunA17_Chr2g0328791 32.203 177 114 3 26 196 16 192 5.02e-23 101
Msa0388040 MtrunA17_Chr1g0179701 36.095 169 105 3 25 192 62 228 1.11e-22 101
Msa0388040 MtrunA17_Chr1g0179701 29.167 240 134 8 28 249 244 465 1.57e-20 95.1
Msa0388040 MtrunA17_Chr1g0179701 34.078 179 110 5 19 192 144 319 2.37e-19 91.7
Msa0388040 MtrunA17_Chr8g0340131 64.151 53 19 0 487 539 182 234 2.36e-21 93.2
Msa0388040 MtrunA17_Chr3g0116631 32.632 190 117 2 17 196 101 289 1.09e-20 92.4
Msa0388040 MtrunA17_Chr4g0058151 32.222 180 114 2 20 192 117 295 1.27e-20 92.4
Msa0388040 MtrunA17_Chr7g0265341 35.088 171 104 4 25 192 70 236 1.30e-20 95.9
Msa0388040 MtrunA17_Chr7g0265341 33.880 183 101 5 28 193 252 431 1.70e-20 95.5
Msa0388040 MtrunA17_Chr7g0265341 31.100 209 123 7 19 220 152 346 6.36e-19 90.5
Msa0388040 MtrunA17_Chr4g0075411 36.170 141 68 3 401 539 97 217 6.99e-20 88.6
Msa0388040 MtrunA17_Chr4g0068631 36.612 183 104 7 25 200 88 265 9.71e-19 90.1
Msa0388040 MtrunA17_Chr1g0177101 30.055 183 115 2 19 189 102 283 8.36e-18 84.3
Msa0388040 MtrunA17_Chr3g0133651 28.125 192 131 3 16 200 84 275 1.66e-17 85.1
Msa0388040 MtrunA17_Chr7g0267571 29.213 178 109 2 28 189 112 288 3.39e-17 82.8
Msa0388040 MtrunA17_Chr4g0045221 29.121 182 118 3 26 196 117 298 6.14e-17 83.6
Msa0388040 MtrunA17_Chr2g0289321 37.984 129 54 5 421 539 101 213 2.78e-16 77.8
Msa0388040 MtrunA17_Chr1g0153871 28.261 184 126 3 23 200 95 278 2.87e-16 81.3
Msa0388040 MtrunA17_Chr1g0200371 33.333 87 57 1 22 107 4 90 3.19e-16 77.4
Msa0388040 MtrunA17_Chr0c09g0493511 32.086 187 106 6 27 195 120 303 1.19e-15 79.7
Msa0388040 MtrunA17_Chr0c09g0493511 29.384 211 130 9 25 228 31 229 2.79e-14 75.5
Msa0388040 MtrunA17_Chr0c09g0493511 37.500 104 62 3 86 188 4 105 4.29e-14 75.1
Msa0388040 MtrunA17_Chr6g0466451 31.414 191 108 7 27 198 107 293 2.16e-14 75.9
Msa0388040 MtrunA17_Chr6g0466451 30.583 206 129 8 25 225 15 211 7.35e-14 73.9
Msa0388040 MtrunA17_Chr6g0465631 31.414 191 108 7 27 198 107 293 2.28e-14 75.9
Msa0388040 MtrunA17_Chr6g0465631 30.583 206 129 8 25 225 15 211 7.54e-14 73.9
Msa0388040 MtrunA17_Chr2g0288251 27.957 186 126 3 16 193 51 236 3.64e-14 74.3
Msa0388040 MtrunA17_Chr2g0288251 25.946 185 111 5 24 189 154 331 3.88e-11 65.1
Msa0388040 MtrunA17_Chr6g0465691 31.351 185 106 6 27 193 120 301 6.00e-14 74.3
Msa0388040 MtrunA17_Chr6g0465691 35.135 111 69 3 86 195 4 112 1.02e-13 73.6
Msa0388040 MtrunA17_Chr6g0465691 27.670 206 140 7 25 228 31 229 6.36e-13 71.2
Msa0388040 MtrunA17_Chr3g0119311 44.304 79 43 1 114 192 38 115 1.15e-13 68.2
Msa0388040 MtrunA17_Chr1g0168601 31.169 154 101 2 43 192 80 232 1.19e-13 70.9
Msa0388040 MtrunA17_Chr3g0087481 28.161 174 112 2 28 189 63 235 2.39e-13 69.7
Msa0388040 MtrunA17_Chr4g0074711 28.736 174 118 3 26 193 75 248 4.14e-13 71.2
Msa0388040 MtrunA17_Chr3g0121631 46.053 76 39 2 114 189 38 111 8.50e-13 66.2
Msa0388040 MtrunA17_Chr4g0061451 43.038 79 44 1 114 192 44 121 1.06e-12 68.6
Msa0388040 MtrunA17_Chr4g0013971 28.033 239 112 9 9 195 65 295 6.19e-12 67.8
Msa0388040 MtrunA17_Chr4g0035001 45.679 81 43 1 109 189 3 82 8.62e-12 63.5
Msa0388040 MtrunA17_Chr8g0383661 27.174 184 114 6 20 187 198 377 9.18e-12 67.8
Msa0388040 MtrunA17_Chr4g0035051 41.176 85 49 1 107 191 3 86 1.12e-11 62.0
Msa0388040 MtrunA17_Chr7g0219021 41.975 81 46 1 112 192 40 119 1.24e-11 65.1
Msa0388040 MtrunA17_Chr3g0086861 39.474 76 45 1 114 189 46 120 2.53e-11 65.9
Msa0388040 MtrunA17_Chr4g0035031 43.373 83 46 1 107 189 3 84 2.68e-11 62.8
Msa0388040 MtrunA17_Chr6g0449481 26.316 171 108 3 28 189 48 209 3.47e-11 65.1
Msa0388040 MtrunA17_Chr4g0050781 44.737 76 41 1 114 189 9 83 9.76e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388040 AT2G18510.1 92.500 200 15 0 1 200 1 200 5.06e-134 394
Msa0388040 AT3G07120.1 35.106 376 182 14 210 539 1 360 1.35e-42 156
Msa0388040 AT4G34110.1 43.353 173 95 3 15 186 26 196 8.29e-33 133
Msa0388040 AT4G34110.1 29.293 198 120 5 18 198 208 402 1.68e-15 80.1
Msa0388040 AT4G34110.1 28.495 186 119 5 18 195 117 296 1.41e-13 73.9
Msa0388040 AT1G49760.1 40.571 175 98 4 28 198 48 220 1.08e-31 130
Msa0388040 AT1G49760.1 31.313 198 116 5 18 198 217 411 3.03e-17 85.5
Msa0388040 AT1G49760.1 31.122 196 124 6 28 218 136 325 1.82e-16 83.2
Msa0388040 AT1G49760.2 40.571 175 98 4 28 198 48 220 1.08e-31 130
Msa0388040 AT1G49760.2 31.313 198 116 5 18 198 217 411 3.03e-17 85.5
Msa0388040 AT1G49760.2 31.122 196 124 6 28 218 136 325 1.82e-16 83.2
Msa0388040 AT3G14100.1 38.286 175 99 4 26 197 60 228 1.05e-29 121
Msa0388040 AT3G14100.1 29.268 205 103 6 28 196 147 345 6.40e-16 80.5
Msa0388040 AT1G54080.1 36.571 175 102 4 26 197 64 232 5.96e-29 119
Msa0388040 AT1G54080.1 26.341 205 109 5 28 196 151 349 6.23e-14 74.3
Msa0388040 AT1G71770.1 36.416 173 106 4 24 195 58 227 2.76e-28 119
Msa0388040 AT1G71770.1 34.135 208 121 7 25 225 146 344 4.14e-19 91.7
Msa0388040 AT1G71770.1 30.151 199 116 6 27 208 241 433 5.29e-16 81.6
Msa0388040 AT1G71770.2 36.416 173 106 4 24 195 58 227 2.76e-28 119
Msa0388040 AT1G71770.2 34.135 208 121 7 25 225 146 344 4.14e-19 91.7
Msa0388040 AT1G71770.2 30.151 199 116 6 27 208 241 433 5.29e-16 81.6
Msa0388040 AT1G54080.2 35.955 178 103 4 26 197 64 236 2.86e-28 117
Msa0388040 AT1G54080.2 26.316 209 108 6 28 196 151 353 3.97e-13 72.0
Msa0388040 AT1G17370.1 35.632 174 105 3 26 197 55 223 4.04e-28 117
Msa0388040 AT1G17370.1 25.854 205 110 5 28 196 142 340 9.40e-13 70.9
Msa0388040 AT1G17370.2 35.632 174 105 3 26 197 55 223 4.27e-28 117
Msa0388040 AT1G17370.2 26.238 202 110 5 28 196 142 337 4.47e-13 71.6
Msa0388040 AT1G22760.1 33.526 173 111 4 24 195 48 217 1.48e-26 114
Msa0388040 AT1G22760.1 35.450 189 109 5 28 209 139 321 3.40e-21 97.8
Msa0388040 AT1G22760.1 30.457 197 114 5 27 206 231 421 5.48e-17 84.7
Msa0388040 AT2G23350.1 38.462 169 101 3 28 195 49 215 7.69e-26 112
Msa0388040 AT2G23350.1 32.955 176 104 5 28 195 137 306 2.85e-15 79.3
Msa0388040 AT2G23350.1 28.426 197 121 5 16 195 216 409 7.86e-15 77.8
Msa0388040 AT3G25030.3 42.742 124 54 2 420 539 100 210 3.08e-24 101
Msa0388040 AT3G25030.1 42.742 124 54 2 420 539 140 250 3.43e-24 102
Msa0388040 AT3G25030.4 42.742 124 54 2 420 539 140 250 3.43e-24 102
Msa0388040 AT3G25030.2 42.742 124 54 2 420 539 140 250 3.43e-24 102
Msa0388040 AT5G19350.1 32.086 187 122 3 26 207 25 211 1.04e-23 103
Msa0388040 AT5G19350.2 33.523 176 112 3 26 196 25 200 4.64e-23 102
Msa0388040 AT4G13100.5 45.299 117 44 4 430 539 153 256 1.77e-22 97.4
Msa0388040 AT4G13100.3 45.299 117 44 4 430 539 153 256 1.77e-22 97.4
Msa0388040 AT4G13100.8 45.299 117 47 4 430 539 153 259 1.78e-22 97.4
Msa0388040 AT4G13100.7 45.299 117 47 4 430 539 153 259 1.78e-22 97.4
Msa0388040 AT4G13100.9 45.299 117 47 4 430 539 153 259 1.78e-22 97.4
Msa0388040 AT4G13100.1 45.299 117 47 4 430 539 153 259 1.78e-22 97.4
Msa0388040 AT4G13100.4 45.299 117 47 4 430 539 150 256 1.82e-22 97.4
Msa0388040 AT4G24770.1 33.889 180 111 2 20 192 145 323 2.23e-22 98.6
Msa0388040 AT4G24770.2 33.889 180 111 2 20 192 145 323 2.23e-22 98.6
Msa0388040 AT4G13100.2 45.299 117 44 4 430 539 162 265 3.38e-22 96.7
Msa0388040 AT5G50250.1 33.333 177 110 2 23 192 111 286 4.69e-22 97.1
Msa0388040 AT3G19130.1 33.880 183 114 3 26 201 109 291 5.21e-22 99.4
Msa0388040 AT3G52380.1 30.769 195 116 4 16 193 107 299 8.80e-20 90.9
Msa0388040 AT4G16280.3 33.333 192 119 6 11 195 106 295 2.26e-19 92.0
Msa0388040 AT1G49600.1 31.579 190 121 4 26 206 120 309 3.69e-19 90.5
Msa0388040 AT4G16280.4 33.333 192 119 6 11 195 31 220 4.54e-19 91.3
Msa0388040 AT2G36660.1 34.118 170 107 4 25 192 24 190 4.70e-19 91.3
Msa0388040 AT2G36660.1 30.601 183 107 4 28 193 204 383 2.27e-16 82.8
Msa0388040 AT2G36660.1 30.144 209 133 5 19 224 106 304 5.47e-16 81.6
Msa0388040 AT4G16280.2 33.333 192 119 6 11 195 106 295 6.30e-19 90.9
Msa0388040 AT1G49600.3 31.579 190 121 4 26 206 120 309 1.00e-18 89.4
Msa0388040 AT1G49600.2 31.579 190 121 4 26 206 120 309 1.00e-18 89.4
Msa0388040 AT3G16380.1 28.571 196 132 3 14 205 11 202 1.23e-18 89.7
Msa0388040 AT3G16380.1 32.418 182 114 5 21 197 108 285 4.81e-18 87.8
Msa0388040 AT3G16380.1 27.459 244 131 6 22 248 198 412 5.70e-16 81.3
Msa0388040 AT3G52150.2 30.508 177 108 2 27 189 78 253 5.55e-18 84.3
Msa0388040 AT3G52150.1 30.508 177 108 2 27 189 78 253 5.55e-18 84.3
Msa0388040 AT1G47490.2 30.526 190 123 4 16 196 92 281 1.85e-17 84.0
Msa0388040 AT1G11650.1 29.348 184 123 3 26 202 63 246 3.95e-17 82.8
Msa0388040 AT5G54900.1 29.213 178 109 4 28 193 63 235 6.02e-17 83.2
Msa0388040 AT5G54900.1 25.946 185 111 5 24 189 153 330 6.66e-11 64.7
Msa0388040 AT1G47500.2 30.526 190 123 4 16 196 94 283 7.78e-17 82.0
Msa0388040 AT4G10110.1 34.940 83 53 1 24 105 6 88 1.25e-16 78.2
Msa0388040 AT1G11650.2 29.348 184 123 3 26 202 63 246 1.61e-16 82.0
Msa0388040 AT1G47490.1 30.526 190 123 4 16 196 92 281 2.56e-16 81.6
Msa0388040 AT4G22250.1 38.793 116 48 3 430 539 116 214 2.57e-16 78.6
Msa0388040 AT1G47500.1 30.526 190 123 4 16 196 94 283 3.74e-16 81.3
Msa0388040 AT1G47500.1 27.419 186 108 5 24 189 198 376 8.20e-11 64.7
Msa0388040 AT4G27000.1 27.485 171 118 2 28 192 83 253 2.03e-15 79.0
Msa0388040 AT5G09880.1 31.667 180 108 6 20 187 164 340 1.29e-14 77.0
Msa0388040 AT4G03965.1 33.628 113 56 3 432 539 111 209 3.36e-14 72.0
Msa0388040 AT1G60000.1 31.176 170 111 3 28 192 88 256 2.87e-13 70.5
Msa0388040 AT1G62370.1 29.412 153 77 4 387 539 83 204 3.70e-13 68.9
Msa0388040 AT5G47320.1 46.053 76 40 1 114 189 33 107 1.49e-12 67.4
Msa0388040 AT3G13224.2 26.744 172 118 4 28 194 22 190 1.62e-12 69.3
Msa0388040 AT5G40490.1 28.488 172 109 4 28 192 45 209 1.66e-12 70.1
Msa0388040 AT3G13224.3 26.744 172 118 4 28 194 13 181 1.68e-12 69.3
Msa0388040 AT1G34140.1 27.888 251 139 9 27 242 121 364 1.87e-12 69.7
Msa0388040 AT1G34140.1 30.508 177 114 5 25 197 31 202 1.89e-12 69.7
Msa0388040 AT1G34140.1 38.095 105 62 3 83 186 1 103 2.72e-11 66.2
Msa0388040 AT5G47620.1 30.387 181 107 5 28 193 9 185 3.24e-12 68.9
Msa0388040 AT5G47620.2 30.387 181 107 5 28 193 9 185 3.24e-12 68.9
Msa0388040 AT5G47620.5 30.387 181 107 5 28 193 9 185 3.24e-12 68.9
Msa0388040 AT2G35410.1 26.230 183 121 2 28 197 98 279 5.43e-12 67.4
Msa0388040 AT5G52545.2 34.021 97 62 1 114 208 15 111 1.17e-11 63.5
Msa0388040 AT3G13224.1 26.829 164 112 4 28 186 22 182 1.40e-11 65.1
Msa0388040 AT1G18630.1 41.026 78 45 1 112 189 36 112 1.46e-11 63.2
Msa0388040 AT3G23830.2 37.349 83 51 1 112 194 35 116 1.93e-11 62.4
Msa0388040 AT3G23830.1 37.349 83 51 1 112 194 35 116 1.93e-11 62.4
Msa0388040 AT4G13860.1 36.986 73 45 1 114 186 5 76 2.00e-11 60.8
Msa0388040 AT5G61030.2 42.105 76 43 1 114 189 42 116 2.14e-11 65.5
Msa0388040 AT5G61030.1 42.105 76 43 1 114 189 42 116 2.14e-11 65.5
Msa0388040 AT1G17640.2 26.901 171 120 2 28 194 69 238 2.28e-11 66.2
Msa0388040 AT1G17640.1 26.901 171 120 2 28 194 69 238 2.28e-11 66.2
Msa0388040 AT1G17640.3 26.901 171 120 2 28 194 69 238 2.28e-11 66.2
Msa0388040 AT1G60900.1 28.293 205 99 7 27 191 257 453 2.37e-11 66.6
Msa0388040 AT5G04280.1 41.489 94 52 2 111 202 6 98 2.94e-11 65.1
Msa0388040 AT2G16940.5 31.016 187 104 9 20 187 37 217 5.13e-11 65.1
Msa0388040 AT2G16940.4 31.016 187 104 9 20 187 37 217 5.13e-11 65.1
Msa0388040 AT5G40490.2 29.605 152 93 4 45 189 45 189 5.61e-11 65.1
Msa0388040 AT1G03457.2 28.713 202 126 7 14 202 1 197 6.66e-11 65.1
Msa0388040 AT2G21660.2 42.169 83 47 1 107 189 3 84 8.41e-11 61.2
Msa0388040 AT1G58470.2 28.205 195 107 5 28 193 9 199 8.73e-11 64.3
Msa0388040 AT1G58470.1 28.205 195 107 5 28 193 9 199 8.73e-11 64.3

Find 143 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAACATGATTAAACTTTA+TGG 0.078843 3_1:-92168683 Msa0388040:CDS
AGCTTCTGCTGTTTGGATTT+TGG 0.125473 3_1:+92162095 None:intergenic
TAGCCGAAGCTTGTCTTTAA+AGG 0.159939 3_1:+92162177 None:intergenic
AATCATGTTAAGTACTTTAA+TGG 0.175680 3_1:+92168694 None:intergenic
AATTCAGGCTGTTGTGAGTC+TGG 0.232935 3_1:+92169228 None:intergenic
GAGCTCCCACGAGTGAATTT+TGG 0.247907 3_1:+92161953 None:intergenic
GTTAAAATTAACTTCAATTC+AGG 0.266213 3_1:+92169213 None:intergenic
CGTACCTTATTTACACGAAT+TGG 0.274565 3_1:+92168656 None:intergenic
GATGTGTTCAAGGGAGCTTC+TGG 0.299919 3_1:-92161450 Msa0388040:CDS
TATGATACTTTCAGTGCATT+TGG 0.313727 3_1:-92167543 Msa0388040:CDS
AAAACCAATTCGTGTAAATA+AGG 0.327127 3_1:-92168660 Msa0388040:intron
TGTGAAAAGCTTCTGCTGTT+TGG 0.327474 3_1:+92162088 None:intergenic
ATGTCGTTGATGGATTTGTT+AGG 0.340148 3_1:-92161662 Msa0388040:CDS
ACGGGGAATTCCCGAGGCTT+TGG 0.354696 3_1:-92164981 Msa0388040:CDS
CGTACTGTGTGCTCTGCTTC+CGG 0.356053 3_1:-92169159 Msa0388040:five_prime_UTR
TATTGGCGATTTGTCTCAAT+TGG 0.361516 3_1:-92169301 None:intergenic
CTGCTTCCGGCTGCCGGTGA+AGG 0.370432 3_1:-92169146 Msa0388040:five_prime_UTR
ACTAATCAACATCAAGGTTA+TGG 0.381280 3_1:-92168834 Msa0388040:CDS
GATAATGCCCTCCCCGTCTC+TGG 0.395714 3_1:+92161761 None:intergenic
GGGGAGACTGATAGAGAGAT+GGG 0.409616 3_1:-92161641 Msa0388040:CDS
GCGGAGGCTGAGGCTGCAAC+AGG 0.410299 3_1:-92161695 Msa0388040:CDS
TATATTTCACAGGCAATGAA+TGG 0.413192 3_1:-92164312 Msa0388040:intron
TGATTAGTGACTCTATCCTT+TGG 0.414655 3_1:+92168849 None:intergenic
AGAAGCTGCAGCGGAGGCTG+AGG 0.420492 3_1:-92161705 Msa0388040:CDS
TGTCGTTGATGGATTTGTTA+GGG 0.426572 3_1:-92161661 Msa0388040:CDS
ACCTCCGACGATGTCGTTGA+TGG 0.428506 3_1:-92161672 Msa0388040:CDS
TGTGCTCTGCTTCCGGCTGC+CGG 0.441029 3_1:-92169152 Msa0388040:five_prime_UTR
GGTGTTGGTGCGAATCTGCT+CGG 0.441055 3_1:-92169102 Msa0388040:CDS
GAATCTGCTCGGGCAACATT+CGG 0.443001 3_1:-92169091 Msa0388040:CDS
TTTGAATATGGAAGGTCATC+GGG 0.444490 3_1:-92162720 Msa0388040:intron
ATTCAGGCTGTTGTGAGTCT+GGG 0.450992 3_1:+92169229 None:intergenic
TGGATAGGGATGTCTGATGT+TGG 0.451282 3_1:+92162115 None:intergenic
AAGCCTTTAAAGACAAGCTT+CGG 0.451547 3_1:-92162180 Msa0388040:CDS
TGGATCCGACGACACACTAC+TGG 0.451753 3_1:+92161856 None:intergenic
AGCGGCAGAAGCTGCAGCGG+AGG 0.453049 3_1:-92161711 Msa0388040:CDS
AGAGCTTGGCGGTGTAGAGC+CGG 0.453417 3_1:+92162601 None:intergenic
TATTTGCATGGTGAAGCATA+AGG 0.455029 3_1:-92161510 Msa0388040:CDS
CGTCTTTGATGATGTCTATG+AGG 0.458675 3_1:+92162543 None:intergenic
CATTAGCTACGATTCATTTG+AGG 0.458779 3_1:-92164955 Msa0388040:CDS
AGCAGTGGCGGCACAAGAAG+CGG 0.461146 3_1:-92161729 Msa0388040:CDS
GGATGCTTGGTATCATCGTC+TGG 0.461468 3_1:+92161782 None:intergenic
GAAGCATAAGGGCACTGCTT+TGG 0.462618 3_1:-92161498 Msa0388040:CDS
ACTCGAATTGCGCCGGGTGT+TGG 0.464142 3_1:-92169117 Msa0388040:CDS
CCTCCCCGTCTCTGGATGCT+TGG 0.465184 3_1:+92161769 None:intergenic
AGGGATGTCTGATGTTGGAA+TGG 0.468079 3_1:+92162120 None:intergenic
GATTTCTGAGGAGTTATTGT+GGG 0.469357 3_1:-92169019 Msa0388040:CDS
TGCTTTGGCGTTGTAGAGCT+TGG 0.469785 3_1:+92162587 None:intergenic
CCTCGGGAATTCCCCGTGTC+AGG 0.470185 3_1:+92164987 None:intergenic
GGCGATTTGTCTCAATTGGA+CGG 0.470710 3_1:-92169297 Msa0388040:five_prime_UTR
AGGGGAGACTGATAGAGAGA+TGG 0.472745 3_1:-92161642 Msa0388040:CDS
GGCATCTGATTCAGCTATTG+AGG 0.474981 3_1:-92164934 Msa0388040:intron
CGACGTAAGCAGTGGCATCT+TGG 0.484278 3_1:+92169058 None:intergenic
TCGTCGGATCCATTCCGAAA+AGG 0.487048 3_1:-92161845 Msa0388040:CDS
CGTCGGATCCATTCCGAAAA+GGG 0.487282 3_1:-92161844 Msa0388040:CDS
GCTAATGAAGCCAAAGCCTC+GGG 0.488907 3_1:+92164971 None:intergenic
ATTTGCATGGTGAAGCATAA+GGG 0.490601 3_1:-92161509 Msa0388040:CDS
TGTCTGAGTCGTGATGAGTT+TGG 0.492254 3_1:+92162038 None:intergenic
AGCTAATGAAGCCAAAGCCT+CGG 0.493845 3_1:+92164970 None:intergenic
AAGGGAGCTTCTGGTTGCTA+AGG 0.496586 3_1:-92161441 Msa0388040:CDS
GATACCAAGCATCCAGAGAC+GGG 0.496822 3_1:-92161773 Msa0388040:CDS
AGAAGCGGCAGAAGCTGCAG+CGG 0.497737 3_1:-92161714 Msa0388040:CDS
GAGCTTGGCGGTGTAGAGCC+GGG 0.499580 3_1:+92162602 None:intergenic
TGGCCTGCTAGCTGGAGCAT+GGG 0.500180 3_1:+92161973 None:intergenic
GACTGATAGAGAGATGGGGT+TGG 0.500325 3_1:-92161636 Msa0388040:CDS
GATCGAGATTGCCAATGAAA+AGG 0.501665 3_1:+92167692 None:intergenic
AATCCCATGCTCCAGCTAGC+AGG 0.507491 3_1:-92161976 Msa0388040:CDS
GATAGAGAGATGGGGTTGGA+AGG 0.508067 3_1:-92161632 Msa0388040:CDS
TAAAGCGTGCTGGCTCTGCT+TGG 0.510415 3_1:-92162156 Msa0388040:CDS
AGATGGGGTTGGAAGGGTCA+AGG 0.511672 3_1:-92161625 Msa0388040:CDS
GGGATGTCTGATGTTGGAAT+GGG 0.514310 3_1:+92162121 None:intergenic
TTGGCCTGCTAGCTGGAGCA+TGG 0.514758 3_1:+92161972 None:intergenic
GAAGGTGAAGATGATGAAGA+TGG 0.517231 3_1:-92161560 Msa0388040:CDS
AGCAGATTCGCACCAACACC+CGG 0.520892 3_1:+92169105 None:intergenic
CGTCATCCTTCACCGGCAGC+CGG 0.522897 3_1:+92169140 None:intergenic
AGCACACAGTACGATACAGC+GGG 0.526771 3_1:+92169169 None:intergenic
AAGCTTCGGCTAAAGCGTGC+TGG 0.527008 3_1:-92162166 Msa0388040:CDS
AGGGAGCTTCTGGTTGCTAA+GGG 0.527571 3_1:-92161440 Msa0388040:CDS
TTTGTTCAAGCTGGTCCAGT+AGG 0.531235 3_1:-92168991 Msa0388040:intron
GTGTTGGTGCGAATCTGCTC+GGG 0.533308 3_1:-92169101 Msa0388040:CDS
ATACTAGTGGAGGAAATCTC+CGG 0.536362 3_1:-92161901 Msa0388040:CDS
GCGATTTGTCTCAATTGGAC+GGG 0.537675 3_1:-92169296 Msa0388040:five_prime_UTR
AGCAAGCGAGAGAAGCTAGC+GGG 0.542475 3_1:-92162662 Msa0388040:CDS
ATGGATCGAGGTCATCTACT+TGG 0.544070 3_1:+92162005 None:intergenic
GTCTTTGATGATGTCTATGA+GGG 0.544217 3_1:+92162544 None:intergenic
GGAGCATGGGATTCATCTGA+TGG 0.544263 3_1:+92161986 None:intergenic
ACACACTTGTTCTATTTGCA+TGG 0.550618 3_1:-92161522 Msa0388040:CDS
AAGGTGAAGATGATGAAGAT+GGG 0.554506 3_1:-92161559 Msa0388040:CDS
AGATTTCTGAGGAGTTATTG+TGG 0.556503 3_1:-92169020 Msa0388040:CDS
AGTTAATGTGTATGTTCCAA+AGG 0.563847 3_1:-92168865 Msa0388040:CDS
ATGACGACTCGAATTGCGCC+GGG 0.570929 3_1:-92169123 Msa0388040:CDS
ATACAAACAGTGTCGTTCGC+AGG 0.572123 3_1:-92169269 Msa0388040:five_prime_UTR
TCGAGACAGCTTCGACGATG+AGG 0.576310 3_1:-92161807 Msa0388040:CDS
AAAACGAAATTATTACAAAG+TGG 0.576401 3_1:+92161410 None:intergenic
TTTGGCGTTGTAGAGCTTGG+CGG 0.578554 3_1:+92162590 None:intergenic
TTCGAGTCGTCATCCTTCAC+CGG 0.581825 3_1:+92169133 None:intergenic
TGAAGATGGGGAAAGTGCAT+TGG 0.583542 3_1:-92161546 Msa0388040:CDS
ATAGAGAGATGGGGTTGGAA+GGG 0.584366 3_1:-92161631 Msa0388040:CDS
AGCAGGCCAAAATTCACTCG+TGG 0.590104 3_1:-92161959 Msa0388040:CDS
AGTTATTGTTACTAATCCCA+AGG 0.590673 3_1:-92167520 Msa0388040:intron
GAATTCTTGCGTGATAATTG+TGG 0.593473 3_1:+92161878 None:intergenic
ATCATGAGAGATCCTGACAC+GGG 0.594230 3_1:-92164999 Msa0388040:CDS
GCTTATAAGAAAGACACTAA+AGG 0.594299 3_1:-92164252 Msa0388040:CDS
GATTCCTCTGAGAATACTAG+TGG 0.594699 3_1:-92161914 Msa0388040:CDS
AAGGTATATATTAAGTGATG+AGG 0.596739 3_1:-92161606 Msa0388040:CDS
TCCTCTGAGAATACTAGTGG+AGG 0.597257 3_1:-92161911 Msa0388040:CDS
TGATACCAAGCATCCAGAGA+CGG 0.598650 3_1:-92161774 Msa0388040:CDS
AGAGTCACTAATCAACATCA+AGG 0.598944 3_1:-92168840 Msa0388040:CDS
GATGACGACTCGAATTGCGC+CGG 0.600813 3_1:-92169124 Msa0388040:CDS
GAATTCCAGTAGTGTGTCGT+CGG 0.603076 3_1:-92161861 Msa0388040:CDS
TCTTGCGTGATAATTGTGGC+CGG 0.603393 3_1:+92161882 None:intergenic
AATAACTCCTCAGAAATCTG+AGG 0.603991 3_1:+92169024 None:intergenic
TCCATCAACGACATCGTCGG+AGG 0.611948 3_1:+92161671 None:intergenic
GCAGGCCAAAATTCACTCGT+GGG 0.618628 3_1:-92161958 Msa0388040:CDS
AAATCCATCAACGACATCGT+CGG 0.618750 3_1:+92161668 None:intergenic
GTCGTTGATGGATTTGTTAG+GGG 0.618908 3_1:-92161660 Msa0388040:CDS
ATCTGCGAGAGAAGCAGTGG+CGG 0.621972 3_1:-92161741 Msa0388040:CDS
TCTGCTCGGGCAACATTCGG+CGG 0.626221 3_1:-92169088 Msa0388040:CDS
AGAAAGACACTAAAGGCGAA+AGG 0.629953 3_1:-92164245 Msa0388040:CDS
GACACTAAAGGCGAAAGGCA+CGG 0.632453 3_1:-92164240 Msa0388040:intron
TCGGGCAACATTCGGCGGAG+AGG 0.637911 3_1:-92169083 Msa0388040:CDS
ATTATCTGCGAGAGAAGCAG+TGG 0.640834 3_1:-92161744 Msa0388040:CDS
TCTCGACCCTCAGATTTCTG+AGG 0.647210 3_1:-92169031 Msa0388040:CDS
TTATGAGGAAATGTCAGCTG+CGG 0.647602 3_1:-92162687 Msa0388040:CDS
GGGAGACTGATAGAGAGATG+GGG 0.649131 3_1:-92161640 Msa0388040:CDS
CAAGCATCCAGAGACGGGGA+GGG 0.651075 3_1:-92161768 Msa0388040:CDS
TCCTCCACTAGTATTCTCAG+AGG 0.651316 3_1:+92161910 None:intergenic
CCAAGCATCCAGAGACGGGG+AGG 0.656073 3_1:-92161769 Msa0388040:CDS
AGGTGAAGATGATGAAGATG+GGG 0.657673 3_1:-92161558 Msa0388040:CDS
TTAGCGAATCAACAAAGACC+CGG 0.663952 3_1:-92162620 Msa0388040:CDS
GAGATTGCCGACGTAAGCAG+TGG 0.665074 3_1:+92169050 None:intergenic
GGGATTCATCTGATGGATCG+AGG 0.669034 3_1:+92161993 None:intergenic
CACACAGTACGATACAGCGG+GGG 0.673395 3_1:+92169171 None:intergenic
ATAACTCCTCAGAAATCTGA+GGG 0.674210 3_1:+92169025 None:intergenic
CCTGACACGGGGAATTCCCG+AGG 0.675371 3_1:-92164987 Msa0388040:CDS
AATCAGCATCTTCTTCGCTG+CGG 0.690362 3_1:+92168799 None:intergenic
GATCATGAGAGATCCTGACA+CGG 0.697605 3_1:-92165000 Msa0388040:CDS
CAAGATGCCACTGCTTACGT+CGG 0.698003 3_1:-92169057 Msa0388040:CDS
GAGCAAGCGAGAGAAGCTAG+CGG 0.703074 3_1:-92162663 Msa0388040:CDS
ATACCAAGCATCCAGAGACG+GGG 0.703842 3_1:-92161772 Msa0388040:CDS
GAGCACACAGTACGATACAG+CGG 0.709359 3_1:+92169168 None:intergenic
ACACAGTACGATACAGCGGG+GGG 0.710554 3_1:+92169172 None:intergenic
TCATGAGAGATCCTGACACG+GGG 0.723158 3_1:-92164998 Msa0388040:CDS
GCACACAGTACGATACAGCG+GGG 0.730884 3_1:+92169170 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATATTAGTATAATACT+TGG + chr3_1:92162718-92162737 None:intergenic 10.0%
!!! TCAAATATATCAATTTTTTT+CGG - chr3_1:92163782-92163801 Msa0388040:intron 10.0%
!!! TTTTTAACAATTAATTAATG+AGG + chr3_1:92164906-92164925 None:intergenic 10.0%
!! AATATTTAATCATTATTTGT+AGG + chr3_1:92164983-92165002 None:intergenic 10.0%
!!! ATGATGTATTTTTTTTTTTT+TGG + chr3_1:92166641-92166660 None:intergenic 10.0%
!! TTCGTATATTTAATAAAATA+GGG + chr3_1:92167609-92167628 None:intergenic 10.0%
!! TTTCGTATATTTAATAAAAT+AGG + chr3_1:92167610-92167629 None:intergenic 10.0%
!!! TATTGATCAATTTTATTTTA+TGG - chr3_1:92168395-92168414 Msa0388040:intron 10.0%
!!! AATTAGGTTTTATGTTAATT+TGG + chr3_1:92161954-92161973 None:intergenic 15.0%
!! AAATGAAAAACTTTCATATT+TGG + chr3_1:92163029-92163048 None:intergenic 15.0%
!! ATACAGAATTTAAATAACAT+AGG - chr3_1:92163371-92163390 Msa0388040:intron 15.0%
!! TGATATATTTGATACTTAAA+TGG + chr3_1:92163774-92163793 None:intergenic 15.0%
!! TTAAATCATAGAAAATAATG+AGG - chr3_1:92163962-92163981 Msa0388040:intron 15.0%
!!! AGATAATTTTGTATTAAAGA+AGG - chr3_1:92164615-92164634 Msa0388040:intron 15.0%
!! AATGAATTTAAATTAACTGA+TGG + chr3_1:92164661-92164680 None:intergenic 15.0%
!!! AAATTTTAAACTTCATCAAT+CGG - chr3_1:92165058-92165077 Msa0388040:intron 15.0%
!! AATACAATTAAAATTGAAAG+TGG + chr3_1:92165493-92165512 None:intergenic 15.0%
!! AAAAAAAAAAAGATGAAGTT+AGG + chr3_1:92167335-92167354 None:intergenic 15.0%
!!! ATGAGTTATATTTTTCTTTT+GGG + chr3_1:92167403-92167422 None:intergenic 15.0%
!! AAATTTAGAGAAAAATTCAA+AGG + chr3_1:92167565-92167584 None:intergenic 15.0%
!!! TAAAAGTTCGATTTTATAAA+TGG + chr3_1:92167638-92167657 None:intergenic 15.0%
!! AATACAATAAATGTGAAAAT+AGG + chr3_1:92167665-92167684 None:intergenic 15.0%
!!! TTTTCACATTTATTGTATTT+TGG - chr3_1:92167666-92167685 Msa0388040:intron 15.0%
!!! TATATTTTTACCCAAAAAAA+AGG - chr3_1:92167697-92167716 Msa0388040:CDS 15.0%
!!! ACAAAAAAGTTTGATTTTAA+CGG - chr3_1:92167829-92167848 Msa0388040:intron 15.0%
!! TAGCATTAACATAAAAAATT+AGG + chr3_1:92167909-92167928 None:intergenic 15.0%
!! GTTAAAATTAACTTCAATTC+AGG + chr3_1:92161475-92161494 None:intergenic 20.0%
!! TAAAATGAATAAGAGAGAAA+GGG + chr3_1:92161734-92161753 None:intergenic 20.0%
!!! TCTCTTATTCATTTTAGTTT+AGG - chr3_1:92161738-92161757 Msa0388040:CDS 20.0%
!!! CTCTTATTCATTTTAGTTTA+GGG - chr3_1:92161739-92161758 Msa0388040:CDS 20.0%
!! AATCATGTTAAGTACTTTAA+TGG + chr3_1:92161994-92162013 None:intergenic 20.0%
!! CTTAACATGATTAAACTTTA+TGG - chr3_1:92162002-92162021 Msa0388040:CDS 20.0%
!! ATTAAGATGTTTATCCAATT+AGG - chr3_1:92162154-92162173 Msa0388040:CDS 20.0%
!! TTAAGATGTTTATCCAATTA+GGG - chr3_1:92162155-92162174 Msa0388040:CDS 20.0%
!! AAAAACAGAAATGAAAACTA+GGG + chr3_1:92162443-92162462 None:intergenic 20.0%
!!! TAAATTTAGAGATTCTAAGA+TGG - chr3_1:92162583-92162602 Msa0388040:CDS 20.0%
!!! AAATTTAGAGATTCTAAGAT+GGG - chr3_1:92162584-92162603 Msa0388040:CDS 20.0%
!! TATATTAGTATAATACTTGG+TGG + chr3_1:92162715-92162734 None:intergenic 20.0%
!! AATGATATACAATAAGGATT+GGG + chr3_1:92162756-92162775 None:intergenic 20.0%
!! AATTCGAATGATATACAATA+AGG + chr3_1:92162762-92162781 None:intergenic 20.0%
!! TTAAATAGATTAAAATGTGC+TGG - chr3_1:92163053-92163072 Msa0388040:intron 20.0%
!! TAAATAGATTAAAATGTGCT+GGG - chr3_1:92163054-92163073 Msa0388040:intron 20.0%
!! CTTCAATCACAAAATATTAA+TGG + chr3_1:92163318-92163337 None:intergenic 20.0%
!! AAGACTTGTAAGTATAAATT+AGG - chr3_1:92163738-92163757 Msa0388040:intron 20.0%
!!! GTATTTTAGAAAAAACAGTA+AGG + chr3_1:92163906-92163925 None:intergenic 20.0%
!! AAAAGATGATTACAAACTAA+CGG + chr3_1:92164220-92164239 None:intergenic 20.0%
!!! TATACATCTTTTCTTGAAAA+AGG - chr3_1:92164290-92164309 Msa0388040:CDS 20.0%
!!! ATACATCTTTTCTTGAAAAA+GGG - chr3_1:92164291-92164310 Msa0388040:CDS 20.0%
!! AAACTCCAATTCAATATAAA+CGG + chr3_1:92164417-92164436 None:intergenic 20.0%
!! TGTAATAAATAGTATTAGTG+AGG - chr3_1:92164491-92164510 Msa0388040:intron 20.0%
!!! CTTTATTTTGTTGTTAATAG+TGG - chr3_1:92164553-92164572 Msa0388040:intron 20.0%
!! ACAAAATTATCTAAACTACA+AGG + chr3_1:92164607-92164626 None:intergenic 20.0%
!! GTTGGAAAAATAAATATTAG+CGG + chr3_1:92164694-92164713 None:intergenic 20.0%
!!! TAAAAATTACTTTTCCAGTT+TGG + chr3_1:92164745-92164764 None:intergenic 20.0%
!! AACAATTAATTAATGAGGAA+AGG + chr3_1:92164901-92164920 None:intergenic 20.0%
!! ATGTGATATAGTATCATATA+TGG + chr3_1:92164943-92164962 None:intergenic 20.0%
!! ACTTCAAACTTTACAAATTT+GGG + chr3_1:92165020-92165039 None:intergenic 20.0%
!! TACTTCAAACTTTACAAATT+TGG + chr3_1:92165021-92165040 None:intergenic 20.0%
!!! AATTTGTAAAGTTTGAAGTA+AGG - chr3_1:92165021-92165040 Msa0388040:intron 20.0%
!!! AATTTTAAACTTCATCAATC+GGG - chr3_1:92165059-92165078 Msa0388040:intron 20.0%
!! ATTTACACATGAACATAAAT+GGG + chr3_1:92165538-92165557 None:intergenic 20.0%
!! AATTTACACATGAACATAAA+TGG + chr3_1:92165539-92165558 None:intergenic 20.0%
!!! ACTTTCATTCTTTTGTTATT+CGG - chr3_1:92165823-92165842 Msa0388040:intron 20.0%
!!! TTGATAACAAACAAAATAGA+TGG - chr3_1:92165893-92165912 Msa0388040:intron 20.0%
!!! TGTTTTACTATGTTAATACA+GGG + chr3_1:92165970-92165989 None:intergenic 20.0%
!!! ATGTTTTACTATGTTAATAC+AGG + chr3_1:92165971-92165990 None:intergenic 20.0%
!! AGTCAAATATAAAACTTGAA+GGG + chr3_1:92166011-92166030 None:intergenic 20.0%
!! AAGTCAAATATAAAACTTGA+AGG + chr3_1:92166012-92166031 None:intergenic 20.0%
!! AATATTCCATATTAGATGTA+AGG - chr3_1:92166226-92166245 Msa0388040:intron 20.0%
!!! GAATTATTTCTATATTTCAC+AGG - chr3_1:92166363-92166382 Msa0388040:intron 20.0%
!!! TTTTGGAAATAATATATGCA+TGG + chr3_1:92166624-92166643 None:intergenic 20.0%
!!! AATTTGCTAATTGAAATTAG+TGG + chr3_1:92167010-92167029 None:intergenic 20.0%
!! TATTCTTCTTCAAAACATAT+TGG + chr3_1:92167039-92167058 None:intergenic 20.0%
!!! CATGAGTTATATTTTTCTTT+TGG + chr3_1:92167404-92167423 None:intergenic 20.0%
!!! AAGTTGTATACCTTTTTTTT+GGG + chr3_1:92167710-92167729 None:intergenic 20.0%
!!! AAAGTTGTATACCTTTTTTT+TGG + chr3_1:92167711-92167730 None:intergenic 20.0%
!!! AAAAAAAGGTATACAACTTT+AGG - chr3_1:92167711-92167730 Msa0388040:CDS 20.0%
!!! TAGGCCAATAAATAAATTTT+TGG - chr3_1:92167730-92167749 Msa0388040:CDS 20.0%
!! GACTCCAAAAATTTATTTAT+TGG + chr3_1:92167737-92167756 None:intergenic 20.0%
!!! ATTATTTTTGCCAACAAAAA+TGG + chr3_1:92167769-92167788 None:intergenic 20.0%
!!! ATTTTTGTTGGCAAAAATAA+TGG - chr3_1:92167768-92167787 Msa0388040:intron 20.0%
!! AAAACGAAATTATTACAAAG+TGG + chr3_1:92169278-92169297 None:intergenic 20.0%
! CTAAAATGAATAAGAGAGAA+AGG + chr3_1:92161735-92161754 None:intergenic 25.0%
!! ATTTGGTAGCAAATAATAAG+CGG + chr3_1:92161937-92161956 None:intergenic 25.0%
! AAAACCAATTCGTGTAAATA+AGG - chr3_1:92162025-92162044 Msa0388040:CDS 25.0%
!! AGAATATGAACAACAGTTTT+GGG + chr3_1:92162181-92162200 None:intergenic 25.0%
!! AAGAATATGAACAACAGTTT+TGG + chr3_1:92162182-92162201 None:intergenic 25.0%
! AAAATTAACTCCATTCAAAG+GGG + chr3_1:92162209-92162228 None:intergenic 25.0%
! CAAAATTAACTCCATTCAAA+GGG + chr3_1:92162210-92162229 None:intergenic 25.0%
! ACAAAATTAACTCCATTCAA+AGG + chr3_1:92162211-92162230 None:intergenic 25.0%
! GAAAAACAGAAATGAAAACT+AGG + chr3_1:92162444-92162463 None:intergenic 25.0%
! GAATGATATACAATAAGGAT+TGG + chr3_1:92162757-92162776 None:intergenic 25.0%
!! GTATTGATCTACTATTTCTT+TGG - chr3_1:92162926-92162945 Msa0388040:intron 25.0%
!!! TCTACTATTTCTTTGGTTTT+AGG - chr3_1:92162933-92162952 Msa0388040:intron 25.0%
! AATTAGAAGAGTAAAACCTT+GGG + chr3_1:92163184-92163203 None:intergenic 25.0%
! AAATTAGAAGAGTAAAACCT+TGG + chr3_1:92163185-92163204 None:intergenic 25.0%
! ATGATGTAAAATAGTGTGTA+TGG + chr3_1:92163293-92163312 None:intergenic 25.0%
!! ATACACACTATTTTACATCA+TGG - chr3_1:92163292-92163311 Msa0388040:intron 25.0%
! AATTATTCCGAACCTAAAAT+TGG - chr3_1:92163442-92163461 Msa0388040:intron 25.0%
! AGAACTAAATATCAAGACTT+TGG - chr3_1:92163484-92163503 Msa0388040:intron 25.0%
! TAGTCGATATTAATCATTCT+TGG - chr3_1:92163640-92163659 Msa0388040:intron 25.0%
! TTATACTTACAAGTCTTCAA+GGG + chr3_1:92163735-92163754 None:intergenic 25.0%
! TTTATACTTACAAGTCTTCA+AGG + chr3_1:92163736-92163755 None:intergenic 25.0%
! AAGTATAAATTAGGTAGTCT+CGG - chr3_1:92163747-92163766 Msa0388040:intron 25.0%
! GATCAAAAATAGCAAGTAAA+TGG + chr3_1:92163863-92163882 None:intergenic 25.0%
!!! TTTTAGAAAAAACAGTAAGG+AGG + chr3_1:92163903-92163922 None:intergenic 25.0%
! ATACAGAATTTCCATGATAT+AGG - chr3_1:92163922-92163941 Msa0388040:intron 25.0%
! GAGTTAACAATCATACAATT+GGG - chr3_1:92164004-92164023 Msa0388040:intron 25.0%
! ACAATTGAATATTTCGTTTC+TGG + chr3_1:92164054-92164073 None:intergenic 25.0%
! ATATCTAAGTTACGAGTTTA+AGG - chr3_1:92164264-92164283 Msa0388040:CDS 25.0%
!!! AGGAAACCATCAATTTTTTA+AGG - chr3_1:92164373-92164392 Msa0388040:intron 25.0%
! AACTCCAATTCAATATAAAC+GGG + chr3_1:92164416-92164435 None:intergenic 25.0%
! AATTATCTAAACTACAAGGA+AGG + chr3_1:92164603-92164622 None:intergenic 25.0%
! TTCATAGTAGCTAACAAATA+TGG - chr3_1:92164778-92164797 Msa0388040:intron 25.0%
!! TACATGTTGTTTGTTTGAAA+AGG - chr3_1:92165250-92165269 Msa0388040:intron 25.0%
! TAACAAACAAAATAGATGGA+TGG - chr3_1:92165897-92165916 Msa0388040:intron 25.0%
! AGAAAAGGGATTTGTAAATT+GGG - chr3_1:92166126-92166145 Msa0388040:intron 25.0%
! TTTGTAAATTGGGAAAAATG+TGG - chr3_1:92166136-92166155 Msa0388040:intron 25.0%
! GAAACATCAATTAGAAAAGT+AGG - chr3_1:92166183-92166202 Msa0388040:intron 25.0%
!! ATCAAACAGAGCATTAAATT+AGG - chr3_1:92166259-92166278 Msa0388040:intron 25.0%
!! TCAAACAGAGCATTAAATTA+GGG - chr3_1:92166260-92166279 Msa0388040:intron 25.0%
! GCTTAATTCATAATTTGATG+TGG - chr3_1:92166291-92166310 Msa0388040:intron 25.0%
! AATATTCACTTCCTTCTATA+TGG + chr3_1:92166326-92166345 None:intergenic 25.0%
! TGGGATATAAAGAGAAAATT+TGG + chr3_1:92166966-92166985 None:intergenic 25.0%
!!! ATGTTTTGAAGAAGAATAGA+AGG - chr3_1:92167041-92167060 Msa0388040:intron 25.0%
!!! CAAAAATCAACCATTTTTGT+TGG - chr3_1:92167756-92167775 Msa0388040:intron 25.0%
!!! AAAAGTTTGATTTTAACGGA+AGG - chr3_1:92167833-92167852 Msa0388040:intron 25.0%
! ATTAGGTTTAATTGCACTTA+TGG + chr3_1:92167892-92167911 None:intergenic 25.0%
! TAATGCTATAATTCATAGCT+AGG - chr3_1:92167921-92167940 Msa0388040:intron 25.0%
! ATTAGTTAGTTACTCTACAA+GGG + chr3_1:92168290-92168309 None:intergenic 25.0%
! AATTAGTTAGTTACTCTACA+AGG + chr3_1:92168291-92168310 None:intergenic 25.0%
! AAGGTATATATTAAGTGATG+AGG - chr3_1:92169079-92169098 Msa0388040:CDS 25.0%
!!! TTTTCTGATGATGATTATGA+AGG - chr3_1:92169107-92169126 Msa0388040:CDS 25.0%
AGTTAATGTGTATGTTCCAA+AGG - chr3_1:92161820-92161839 Msa0388040:CDS 30.0%
ACTAATCAACATCAAGGTTA+TGG - chr3_1:92161851-92161870 Msa0388040:CDS 30.0%
AAATATACAACAGAATGCAG+TGG + chr3_1:92162235-92162254 None:intergenic 30.0%
CAAGCAGAAAACTAATAACT+CGG + chr3_1:92162357-92162376 None:intergenic 30.0%
!!! GAGTTATTAGTTTTCTGCTT+GGG - chr3_1:92162356-92162375 Msa0388040:intron 30.0%
TATCTTAATACCACGTAGAA+TGG - chr3_1:92162646-92162665 Msa0388040:CDS 30.0%
! ATCCAAGCTCTTTTTATCTT+GGG + chr3_1:92162962-92162981 None:intergenic 30.0%
! TTTCATATTTGGTGACTTAC+AGG + chr3_1:92163018-92163037 None:intergenic 30.0%
TATGATACTTTCAGTGCATT+TGG - chr3_1:92163142-92163161 Msa0388040:intron 30.0%
AGTTATTGTTACTAATCCCA+AGG - chr3_1:92163165-92163184 Msa0388040:intron 30.0%
ATGAAACAAACAACACTATC+AGG + chr3_1:92163219-92163238 None:intergenic 30.0%
TATTCTCAGAAAACCAACAA+GGG + chr3_1:92163354-92163373 None:intergenic 30.0%
TATCAAGACTTTGGATTATC+TGG - chr3_1:92163493-92163512 Msa0388040:intron 30.0%
AGCTCGGTAAATATTGTATT+GGG + chr3_1:92163553-92163572 None:intergenic 30.0%
TAGCTCGGTAAATATTGTAT+TGG + chr3_1:92163554-92163573 None:intergenic 30.0%
! AGCATTAAATGTGATTAGCT+CGG + chr3_1:92163569-92163588 None:intergenic 30.0%
! GAATGATTAATATCGACTAC+CGG + chr3_1:92163639-92163658 None:intergenic 30.0%
AGTATAAATTAGGTAGTCTC+GGG - chr3_1:92163748-92163767 Msa0388040:intron 30.0%
CGAGTTAACAATCATACAAT+TGG - chr3_1:92164003-92164022 Msa0388040:intron 30.0%
TTAACAATCATACAATTGGG+AGG - chr3_1:92164007-92164026 Msa0388040:intron 30.0%
TAACAATCATACAATTGGGA+GGG - chr3_1:92164008-92164027 Msa0388040:intron 30.0%
! ATTGAATATTTCGTTTCTGG+CGG + chr3_1:92164051-92164070 None:intergenic 30.0%
TAAATCGCCGTTAGTTATTA+GGG - chr3_1:92164152-92164171 Msa0388040:intron 30.0%
! TGGTAGCCTTAAAAAATTGA+TGG + chr3_1:92164382-92164401 None:intergenic 30.0%
ATAAACGGGTACACATTTAT+TGG + chr3_1:92164402-92164421 None:intergenic 30.0%
TGTACCCGTTTATATTGAAT+TGG - chr3_1:92164409-92164428 Msa0388040:intron 30.0%
ATTATGAAGGATAAGGGAAA+GGG - chr3_1:92164462-92164481 Msa0388040:intron 30.0%
! TGAGGTGTTAAGTAATTAGT+AGG - chr3_1:92164509-92164528 Msa0388040:intron 30.0%
! GAGGTGTTAAGTAATTAGTA+GGG - chr3_1:92164510-92164529 Msa0388040:intron 30.0%
AATAAATATTAGCGGTGAGT+GGG + chr3_1:92164686-92164705 None:intergenic 30.0%
AAATAAATATTAGCGGTGAG+TGG + chr3_1:92164687-92164706 None:intergenic 30.0%
! ATTGGTTGCAATAGTCATTT+TGG - chr3_1:92164817-92164836 Msa0388040:intron 30.0%
! AAGTTTGAAGTAAGGTTTCA+CGG - chr3_1:92165029-92165048 Msa0388040:intron 30.0%
! GAGTACTTTTCCACATTTTT+AGG - chr3_1:92165306-92165325 Msa0388040:intron 30.0%
GCATATAAAGCCTAAAAATG+TGG + chr3_1:92165319-92165338 None:intergenic 30.0%
TGACAAAATATACGTATCCT+TGG - chr3_1:92165356-92165375 Msa0388040:intron 30.0%
GACAAAATATACGTATCCTT+GGG - chr3_1:92165357-92165376 Msa0388040:intron 30.0%
AATTATAGATGTGTTACCCA+AGG + chr3_1:92165376-92165395 None:intergenic 30.0%
!!! TGTCTCAGGTGTTTTTTAAT+GGG + chr3_1:92165405-92165424 None:intergenic 30.0%
ACTTAACCTAAACTAACTTG+TGG + chr3_1:92165431-92165450 None:intergenic 30.0%
AGGTTAAGTACTTTATCTGA+TGG - chr3_1:92165442-92165461 Msa0388040:intron 30.0%
TAAGTACTTTATCTGATGGA+TGG - chr3_1:92165446-92165465 Msa0388040:intron 30.0%
! AAGTACTTTATCTGATGGAT+GGG - chr3_1:92165447-92165466 Msa0388040:intron 30.0%
AAAATTTAACCCTCAATGGA+TGG + chr3_1:92165616-92165635 None:intergenic 30.0%
AACAAAATAGATGGATGGAT+AGG - chr3_1:92165902-92165921 Msa0388040:intron 30.0%
AGTCTATGATAGTAGATACA+AGG + chr3_1:92165931-92165950 None:intergenic 30.0%
TCTACTATCATAGACTCTTT+CGG - chr3_1:92165935-92165954 Msa0388040:intron 30.0%
! GCATGAATTCATTTGACTTA+GGG + chr3_1:92166103-92166122 None:intergenic 30.0%
! AGCATGAATTCATTTGACTT+AGG + chr3_1:92166104-92166123 None:intergenic 30.0%
CAGAAAAGGGATTTGTAAAT+TGG - chr3_1:92166125-92166144 Msa0388040:intron 30.0%
TCTACTCCTTACATCTAATA+TGG + chr3_1:92166235-92166254 None:intergenic 30.0%
TAATTCATTATCAGTGACGA+GGG + chr3_1:92166349-92166368 None:intergenic 30.0%
ATAATTCATTATCAGTGACG+AGG + chr3_1:92166350-92166369 None:intergenic 30.0%
GCTTATAAGAAAGACACTAA+AGG - chr3_1:92166433-92166452 Msa0388040:intron 30.0%
GGAAATAATATATGCATGGT+TGG + chr3_1:92166620-92166639 None:intergenic 30.0%
TTTCCCCATAAAATTCGTTA+TGG - chr3_1:92166908-92166927 Msa0388040:intron 30.0%
! CTACCATAACGAATTTTATG+GGG + chr3_1:92166914-92166933 None:intergenic 30.0%
! GCTACCATAACGAATTTTAT+GGG + chr3_1:92166915-92166934 None:intergenic 30.0%
! TAGAAGAGATGGTTGAATTT+TGG + chr3_1:92166937-92166956 None:intergenic 30.0%
AATGTTGACAAAATGGAGAT+GGG + chr3_1:92166985-92167004 None:intergenic 30.0%
AGAAAGAAGAGTTGAAATCA+TGG + chr3_1:92167132-92167151 None:intergenic 30.0%
! TGCTTTGTGTTTTCTAATGA+AGG - chr3_1:92167371-92167390 Msa0388040:intron 30.0%
AAGTAAAAGAACTCATGCAA+TGG - chr3_1:92167429-92167448 Msa0388040:intron 30.0%
! TCATGCAATGGTTAATTTTG+TGG - chr3_1:92167441-92167460 Msa0388040:intron 30.0%
TATTGTACTGTCCAAAAGTA+TGG - chr3_1:92167485-92167504 Msa0388040:intron 30.0%
! TAGTATGAGGAATAGTTCTA+TGG + chr3_1:92167530-92167549 None:intergenic 30.0%
!! GTTGGCAAAAATAATGGATT+AGG - chr3_1:92167774-92167793 Msa0388040:intron 30.0%
TATTCAAAACACACACAACA+TGG + chr3_1:92167953-92167972 None:intergenic 30.0%
!! TGTTGTGTGTGTTTTGAATA+TGG - chr3_1:92167953-92167972 Msa0388040:intron 30.0%
! TTTTGAATATGGAAGGTCAT+CGG - chr3_1:92167964-92167983 Msa0388040:intron 30.0%
! CTGCTTCATTTTCATTGATA+TGG - chr3_1:92168471-92168490 Msa0388040:intron 30.0%
TTCATTGATATGGAAGATCT+TGG - chr3_1:92168481-92168500 Msa0388040:intron 30.0%
AACACATCCTACAAAAACTA+TGG + chr3_1:92169223-92169242 None:intergenic 30.0%
! TTTTTGTAGGATGTGTTCAA+GGG - chr3_1:92169226-92169245 Msa0388040:five_prime_UTR 30.0%
ATAACTCCTCAGAAATCTGA+GGG + chr3_1:92161663-92161682 None:intergenic 35.0%
AATAACTCCTCAGAAATCTG+AGG + chr3_1:92161664-92161683 None:intergenic 35.0%
! AGATTTCTGAGGAGTTATTG+TGG - chr3_1:92161665-92161684 Msa0388040:CDS 35.0%
! GATTTCTGAGGAGTTATTGT+GGG - chr3_1:92161666-92161685 Msa0388040:CDS 35.0%
TGATTAGTGACTCTATCCTT+TGG + chr3_1:92161839-92161858 None:intergenic 35.0%
AGAGTCACTAATCAACATCA+AGG - chr3_1:92161845-92161864 Msa0388040:CDS 35.0%
CTGCAACAAAACAAGCAATT+AGG + chr3_1:92161970-92161989 None:intergenic 35.0%
!!! CTAATTGCTTGTTTTGTTGC+AGG - chr3_1:92161968-92161987 Msa0388040:CDS 35.0%
! CGTACCTTATTTACACGAAT+TGG + chr3_1:92162032-92162051 None:intergenic 35.0%
ATTCTTGATTCCCCTTTGAA+TGG - chr3_1:92162196-92162215 Msa0388040:intron 35.0%
!!! CGAGTTATTAGTTTTCTGCT+TGG - chr3_1:92162355-92162374 Msa0388040:intron 35.0%
! AGTATTGAACCGATTCATGT+TGG - chr3_1:92162502-92162521 Msa0388040:intron 35.0%
GGAATGACAGTTCTTGTATT+TGG - chr3_1:92162557-92162576 Msa0388040:CDS 35.0%
! TCATTGCACACCATTTTATG+TGG - chr3_1:92162677-92162696 Msa0388040:CDS 35.0%
AGAACTTGGTCCACATAAAA+TGG + chr3_1:92162690-92162709 None:intergenic 35.0%
! AATACTTGGTGGTTAGAACT+TGG + chr3_1:92162704-92162723 None:intergenic 35.0%
TTATATCGTTGTCTGTCACT+TGG - chr3_1:92162865-92162884 Msa0388040:intron 35.0%
ATCCCAAGATAAAAAGAGCT+TGG - chr3_1:92162957-92162976 Msa0388040:intron 35.0%
! CATCCAAGCTCTTTTTATCT+TGG + chr3_1:92162963-92162982 None:intergenic 35.0%
GATAAAAAGAGCTTGGATGT+CGG - chr3_1:92162964-92162983 Msa0388040:intron 35.0%
ATAAAAAGAGCTTGGATGTC+GGG - chr3_1:92162965-92162984 Msa0388040:intron 35.0%
! ACTCTTAATGTTTCTGTTGC+AGG - chr3_1:92163099-92163118 Msa0388040:intron 35.0%
ATTTAGTCAGAAACCCTTGT+TGG - chr3_1:92163338-92163357 Msa0388040:intron 35.0%
GTATTCTCAGAAAACCAACA+AGG + chr3_1:92163355-92163374 None:intergenic 35.0%
ACTGAACCTACTCTAATAGT+TGG - chr3_1:92163397-92163416 Msa0388040:intron 35.0%
TTTCCTCCAACTATTAGAGT+AGG + chr3_1:92163406-92163425 None:intergenic 35.0%
GGAGGAAAAATGAAAGAATG+AGG - chr3_1:92163418-92163437 Msa0388040:intron 35.0%
! TTAGTTCTCAGATAGCTAAC+AGG + chr3_1:92163472-92163491 None:intergenic 35.0%
TATCTGGACACATTGTGAAA+TGG - chr3_1:92163509-92163528 Msa0388040:intron 35.0%
GCTCGGTAAATATTGTATTG+GGG + chr3_1:92163552-92163571 None:intergenic 35.0%
CGATATTAATCATTCTTGGC+TGG - chr3_1:92163644-92163663 Msa0388040:intron 35.0%
GAAAACATTGTTGAGACCTA+GGG + chr3_1:92163688-92163707 None:intergenic 35.0%
TGAAAACATTGTTGAGACCT+AGG + chr3_1:92163689-92163708 None:intergenic 35.0%
CTTCAAGGGAAATCATAAAG+TGG + chr3_1:92163721-92163740 None:intergenic 35.0%
!! TTTTTCGGTCACTATTCTAC+TGG - chr3_1:92163797-92163816 Msa0388040:intron 35.0%
AATGGAGAGAAGAAAGAACA+AGG + chr3_1:92163845-92163864 None:intergenic 35.0%
AAACACTACAGCCTATATCA+TGG + chr3_1:92163936-92163955 None:intergenic 35.0%
TGTATGATTGTTAACTCGTG+TGG + chr3_1:92164001-92164020 None:intergenic 35.0%
ACAAAGACCAACTGTTAACA+TGG - chr3_1:92164082-92164101 Msa0388040:intron 35.0%
CAAAGACCAACTGTTAACAT+GGG - chr3_1:92164083-92164102 Msa0388040:intron 35.0%
TAACTAACGGCGATTTAGAT+GGG + chr3_1:92164149-92164168 None:intergenic 35.0%
ATAACTAACGGCGATTTAGA+TGG + chr3_1:92164150-92164169 None:intergenic 35.0%
CTAAATCGCCGTTAGTTATT+AGG - chr3_1:92164151-92164170 Msa0388040:intron 35.0%
AAGCTAACACCATAAGCAAT+AGG + chr3_1:92164183-92164202 None:intergenic 35.0%
GATGATTACAAACTAACGGA+CGG + chr3_1:92164216-92164235 None:intergenic 35.0%
! CAGGAGAGTACATTGAAATT+AGG - chr3_1:92164353-92164372 Msa0388040:intron 35.0%
! ATTGAATTGGAGTTTGCTCT+TGG - chr3_1:92164422-92164441 Msa0388040:intron 35.0%
! TTGAATTGGAGTTTGCTCTT+GGG - chr3_1:92164423-92164442 Msa0388040:intron 35.0%
TGATAGAGACCTGATTATGA+AGG - chr3_1:92164449-92164468 Msa0388040:intron 35.0%
AGACCTGATTATGAAGGATA+AGG - chr3_1:92164455-92164474 Msa0388040:intron 35.0%
GACCTGATTATGAAGGATAA+GGG - chr3_1:92164456-92164475 Msa0388040:intron 35.0%
TTCCCTTATCCTTCATAATC+AGG + chr3_1:92164461-92164480 None:intergenic 35.0%
GATTATGAAGGATAAGGGAA+AGG - chr3_1:92164461-92164480 Msa0388040:intron 35.0%
ATCTAAACTACAAGGAAGGT+TGG + chr3_1:92164599-92164618 None:intergenic 35.0%
! TGATGGATCTTGACATAAGA+TGG + chr3_1:92164644-92164663 None:intergenic 35.0%
ATAAATATTAGCGGTGAGTG+GGG + chr3_1:92164685-92164704 None:intergenic 35.0%
AGGTATAGTCTCATTGTTGT+TGG + chr3_1:92164712-92164731 None:intergenic 35.0%
GGAATTTCAATCGTCTGAAT+TGG - chr3_1:92164799-92164818 Msa0388040:intron 35.0%
TGATTTCCATTACCTTGTGT+TGG - chr3_1:92164844-92164863 Msa0388040:intron 35.0%
GTTAATGATGTCACGTCTTA+AGG + chr3_1:92164879-92164898 None:intergenic 35.0%
TTGTAATCCCTAAGTGTATC+CGG + chr3_1:92165171-92165190 None:intergenic 35.0%
ACATGTAGAGAAAACATCAG+TGG + chr3_1:92165237-92165256 None:intergenic 35.0%
!!! GTCTCAGGTGTTTTTTAATG+GGG + chr3_1:92165404-92165423 None:intergenic 35.0%
!!! CTGTCTCAGGTGTTTTTTAA+TGG + chr3_1:92165406-92165425 None:intergenic 35.0%
CATTAAAAAACACCTGAGAC+AGG - chr3_1:92165404-92165423 Msa0388040:intron 35.0%
!! ATGGATGGGTTATACTATGT+TGG - chr3_1:92165461-92165480 Msa0388040:intron 35.0%
! ATGGGTTATACTATGTTGGA+CGG - chr3_1:92165465-92165484 Msa0388040:intron 35.0%
GCGTAAAATTTAACCCTCAA+TGG + chr3_1:92165620-92165639 None:intergenic 35.0%
AGCTTATGATCTGATGTTCA+AGG - chr3_1:92165650-92165669 Msa0388040:intron 35.0%
CATTAGCTACGATTCATTTG+AGG - chr3_1:92165730-92165749 Msa0388040:intron 35.0%
!!! CTTTTGTTATTCGGCATTCA+TGG - chr3_1:92165832-92165851 Msa0388040:intron 35.0%
ACACATTGAAGCTTACTCAT+AGG - chr3_1:92165858-92165877 Msa0388040:intron 35.0%
CTACTATCATAGACTCTTTC+GGG - chr3_1:92165936-92165955 Msa0388040:intron 35.0%
TCGAGTGTTTCATGATTCTA+TGG - chr3_1:92166036-92166055 Msa0388040:intron 35.0%
ATGAATTCATGCTGCAGAAA+AGG - chr3_1:92166111-92166130 Msa0388040:intron 35.0%
TGAATTCATGCTGCAGAAAA+GGG - chr3_1:92166112-92166131 Msa0388040:intron 35.0%
ATGTCATTGACAATACGTTG+TGG + chr3_1:92166582-92166601 None:intergenic 35.0%
! TCTACCATTGCATTTTTGCA+TGG - chr3_1:92166841-92166860 Msa0388040:intron 35.0%
! GGCTACCATAACGAATTTTA+TGG + chr3_1:92166916-92166935 None:intergenic 35.0%
TTTGGAGATTGTAGAAGAGA+TGG + chr3_1:92166948-92166967 None:intergenic 35.0%
CAATGTTGACAAAATGGAGA+TGG + chr3_1:92166986-92167005 None:intergenic 35.0%
AGTGGTCAATGTTGACAAAA+TGG + chr3_1:92166992-92167011 None:intergenic 35.0%
GTGCTCACATTCATAATAGA+AGG + chr3_1:92167099-92167118 None:intergenic 35.0%
TTGAAATCATGGCTGATGAA+GGG + chr3_1:92167121-92167140 None:intergenic 35.0%
! TATACGTTGCACCATACTTT+TGG + chr3_1:92167499-92167518 None:intergenic 35.0%
GTGCATATATGACTAGTATG+AGG + chr3_1:92167543-92167562 None:intergenic 35.0%
!! GTGTGTGTTTTGAATATGGA+AGG - chr3_1:92167957-92167976 Msa0388040:intron 35.0%
TTTGAATATGGAAGGTCATC+GGG - chr3_1:92167965-92167984 Msa0388040:intron 35.0%
! TCGGGAAAGAACATTTTATG+AGG - chr3_1:92167983-92168002 Msa0388040:intron 35.0%
!! GTCTTTGATGATGTCTATGA+GGG + chr3_1:92168144-92168163 None:intergenic 35.0%
! TTCCTTCCTCTAAAAAGAAG+TGG - chr3_1:92168260-92168279 Msa0388040:intron 35.0%
!! AACCACTTCTTTTTAGAGGA+AGG + chr3_1:92168265-92168284 None:intergenic 35.0%
! GGAAAACCACTTCTTTTTAG+AGG + chr3_1:92168269-92168288 None:intergenic 35.0%
! AAGCCTTTAAAGACAAGCTT+CGG - chr3_1:92168505-92168524 Msa0388040:intron 35.0%
!! TGCTGTTTGGATTTTGGATA+GGG + chr3_1:92168587-92168606 None:intergenic 35.0%
! AGCAGAAGCTTTTCACAATT+CGG - chr3_1:92168603-92168622 Msa0388040:intron 35.0%
GAATTCTTGCGTGATAATTG+TGG + chr3_1:92168810-92168829 None:intergenic 35.0%
!! ATGTCGTTGATGGATTTGTT+AGG - chr3_1:92169023-92169042 Msa0388040:CDS 35.0%
!! TGTCGTTGATGGATTTGTTA+GGG - chr3_1:92169024-92169043 Msa0388040:CDS 35.0%
AAGGTGAAGATGATGAAGAT+GGG - chr3_1:92169126-92169145 Msa0388040:CDS 35.0%
ACACACTTGTTCTATTTGCA+TGG - chr3_1:92169163-92169182 Msa0388040:five_prime_UTR 35.0%
TATTTGCATGGTGAAGCATA+AGG - chr3_1:92169175-92169194 Msa0388040:five_prime_UTR 35.0%
ATTTGCATGGTGAAGCATAA+GGG - chr3_1:92169176-92169195 Msa0388040:five_prime_UTR 35.0%
! CTTGTAGCCATAGTTTTTGT+AGG - chr3_1:92169213-92169232 Msa0388040:five_prime_UTR 35.0%
! GTTTTTGTAGGATGTGTTCA+AGG - chr3_1:92169225-92169244 Msa0388040:five_prime_UTR 35.0%
AGCAAATAATAAGCGGAGCA+AGG + chr3_1:92161930-92161949 None:intergenic 40.0%
AACAGTCTCACAAGTAGGAA+TGG + chr3_1:92162060-92162079 None:intergenic 40.0%
TCTCAAACAGTCTCACAAGT+AGG + chr3_1:92162065-92162084 None:intergenic 40.0%
GATTCTCAGCCAACATGAAT+CGG + chr3_1:92162514-92162533 None:intergenic 40.0%
TCTCCATTACTATTGCTCCT+TGG - chr3_1:92162532-92162551 Msa0388040:CDS 40.0%
CATTACTATTGCTCCTTGGA+GGG - chr3_1:92162536-92162555 Msa0388040:CDS 40.0%
GACAATGATTCCATTCTACG+TGG + chr3_1:92162659-92162678 None:intergenic 40.0%
TAAAAAGAGCTTGGATGTCG+GGG - chr3_1:92162966-92162985 Msa0388040:intron 40.0%
GATCGAGATTGCCAATGAAA+AGG + chr3_1:92162996-92163015 None:intergenic 40.0%
GAACCTACTCTAATAGTTGG+AGG - chr3_1:92163400-92163419 Msa0388040:intron 40.0%
!!! AGGCACACCAATTTTAGGTT+CGG + chr3_1:92163452-92163471 None:intergenic 40.0%
! CTAACAGGCACACCAATTTT+AGG + chr3_1:92163457-92163476 None:intergenic 40.0%
! TAGGGTTTGATTTCTTGGAC+GGG + chr3_1:92163670-92163689 None:intergenic 40.0%
! CTAGGGTTTGATTTCTTGGA+CGG + chr3_1:92163671-92163690 None:intergenic 40.0%
! AGACCTAGGGTTTGATTTCT+TGG + chr3_1:92163675-92163694 None:intergenic 40.0%
GATTGTTAACTCGTGTGGTT+AGG + chr3_1:92163996-92164015 None:intergenic 40.0%
TTGTGACCCATGTTAACAGT+TGG + chr3_1:92164092-92164111 None:intergenic 40.0%
ACTGTTAACATGGGTCACAA+TGG - chr3_1:92164092-92164111 Msa0388040:intron 40.0%
CTGTTAACATGGGTCACAAT+GGG - chr3_1:92164093-92164112 Msa0388040:intron 40.0%
GGATCCTCCCTAATAACTAA+CGG + chr3_1:92164162-92164181 None:intergenic 40.0%
!! AACTACAAGGAAGGTTGGTA+AGG + chr3_1:92164594-92164613 None:intergenic 40.0%
ACCTCATTCAGAAACCAAAC+TGG - chr3_1:92164728-92164747 Msa0388040:intron 40.0%
! TCCAGTTTGGTTTCTGAATG+AGG + chr3_1:92164732-92164751 None:intergenic 40.0%
AAACTGCCAACACAAGGTAA+TGG + chr3_1:92164853-92164872 None:intergenic 40.0%
CCACAATTTCCCTCTTCATT+GGG - chr3_1:92165113-92165132 Msa0388040:intron 40.0%
CACAATTTCCCTCTTCATTG+GGG - chr3_1:92165114-92165133 Msa0388040:intron 40.0%
! CGTTATTTCCCCAATGAAGA+GGG + chr3_1:92165125-92165144 None:intergenic 40.0%
! ATTGTTGGCTACTTTGGGTT+AGG + chr3_1:92165148-92165167 None:intergenic 40.0%
CAACAATCCGGATACACTTA+GGG - chr3_1:92165161-92165180 Msa0388040:intron 40.0%
AGGTTCAGTCTAGTATCAAG+CGG - chr3_1:92165270-92165289 Msa0388040:intron 40.0%
! ACAGGTCCACAAGTTAGTTT+AGG - chr3_1:92165422-92165441 Msa0388040:intron 40.0%
TGGAGGGTTAATACAACTGA+AGG + chr3_1:92165596-92165615 None:intergenic 40.0%
TATTAACCCTCCATCCATTG+AGG - chr3_1:92165603-92165622 Msa0388040:intron 40.0%
ATTAACCCTCCATCCATTGA+GGG - chr3_1:92165604-92165623 Msa0388040:intron 40.0%
TTTAACCCTCAATGGATGGA+GGG + chr3_1:92165612-92165631 None:intergenic 40.0%
ATTTAACCCTCAATGGATGG+AGG + chr3_1:92165613-92165632 None:intergenic 40.0%
GGAAAACACAGCCATATAGA+AGG - chr3_1:92166312-92166331 Msa0388040:intron 40.0%
AGAAAGACACTAAAGGCGAA+AGG - chr3_1:92166440-92166459 Msa0388040:intron 40.0%
TCATTGACAATACGTTGTGG+TGG + chr3_1:92166579-92166598 None:intergenic 40.0%
ACTGCCATGCAAAAATGCAA+TGG + chr3_1:92166848-92166867 None:intergenic 40.0%
! ATTGCATTTTTGCATGGCAG+TGG - chr3_1:92166847-92166866 Msa0388040:intron 40.0%
TAAAGATCTCTCCGCAAACA+TGG - chr3_1:92166875-92166894 Msa0388040:intron 40.0%
AAAGATCTCTCCGCAAACAT+GGG - chr3_1:92166876-92166895 Msa0388040:intron 40.0%
GTTGAAATCATGGCTGATGA+AGG + chr3_1:92167122-92167141 None:intergenic 40.0%
ATTGTCACCTCTCTCAATCT+CGG - chr3_1:92167287-92167306 Msa0388040:intron 40.0%
AAGATGAAGTTAGGAAGCCT+TGG + chr3_1:92167326-92167345 None:intergenic 40.0%
TTATGAGGAAATGTCAGCTG+CGG - chr3_1:92167998-92168017 Msa0388040:intron 40.0%
TTAGCGAATCAACAAAGACC+CGG - chr3_1:92168065-92168084 Msa0388040:intron 40.0%
! ATGAGGGTTCGACTTTTAGA+GGG + chr3_1:92168128-92168147 None:intergenic 40.0%
! TATGAGGGTTCGACTTTTAG+AGG + chr3_1:92168129-92168148 None:intergenic 40.0%
!! CGTCTTTGATGATGTCTATG+AGG + chr3_1:92168145-92168164 None:intergenic 40.0%
GAAACCAACAAAAAGATCGC+AGG - chr3_1:92168167-92168186 Msa0388040:intron 40.0%
! GTTACCTGCGATCTTTTTGT+TGG + chr3_1:92168174-92168193 None:intergenic 40.0%
TAGCCGAAGCTTGTCTTTAA+AGG + chr3_1:92168511-92168530 None:intergenic 40.0%
!! CTGCTGTTTGGATTTTGGAT+AGG + chr3_1:92168588-92168607 None:intergenic 40.0%
!! AGCTTCTGCTGTTTGGATTT+TGG + chr3_1:92168593-92168612 None:intergenic 40.0%
TGTGAAAAGCTTCTGCTGTT+TGG + chr3_1:92168600-92168619 None:intergenic 40.0%
! GATTCCTCTGAGAATACTAG+TGG - chr3_1:92168771-92168790 Msa0388040:intron 40.0%
ATACTAGTGGAGGAAATCTC+CGG - chr3_1:92168784-92168803 Msa0388040:intron 40.0%
AAATCCATCAACGACATCGT+CGG + chr3_1:92169020-92169039 None:intergenic 40.0%
!! GTCGTTGATGGATTTGTTAG+GGG - chr3_1:92169025-92169044 Msa0388040:CDS 40.0%
GAAGGTGAAGATGATGAAGA+TGG - chr3_1:92169125-92169144 Msa0388040:CDS 40.0%
AGGTGAAGATGATGAAGATG+GGG - chr3_1:92169127-92169146 Msa0388040:exon 40.0%
GGCGATTTGTCTCAATTGGA+CGG - chr3_1:92161388-92161407 Msa0388040:CDS 45.0%
GCGATTTGTCTCAATTGGAC+GGG - chr3_1:92161389-92161408 Msa0388040:CDS 45.0%
! ATACAAACAGTGTCGTTCGC+AGG - chr3_1:92161416-92161435 Msa0388040:CDS 45.0%
ATTCAGGCTGTTGTGAGTCT+GGG + chr3_1:92161459-92161478 None:intergenic 45.0%
AATTCAGGCTGTTGTGAGTC+TGG + chr3_1:92161460-92161479 None:intergenic 45.0%
! TGGGAGCTTTTTGTTCAAGC+TGG - chr3_1:92161685-92161704 Msa0388040:CDS 45.0%
TTTGTTCAAGCTGGTCCAGT+AGG - chr3_1:92161694-92161713 Msa0388040:CDS 45.0%
GAGAGAGTGATAGTACCTAC+TGG + chr3_1:92161712-92161731 None:intergenic 45.0%
AATCAGCATCTTCTTCGCTG+CGG + chr3_1:92161889-92161908 None:intergenic 45.0%
AGACTGTTTGAGAGAGCTTG+TGG - chr3_1:92162072-92162091 Msa0388040:CDS 45.0%
!!! CAACAGTTTTGGGCCCTAAT+TGG + chr3_1:92162171-92162190 None:intergenic 45.0%
CCTCCAAGGAGCAATAGTAA+TGG + chr3_1:92162538-92162557 None:intergenic 45.0%
CCATTACTATTGCTCCTTGG+AGG - chr3_1:92162535-92162554 Msa0388040:CDS 45.0%
AAGAACTGTCATTCCCTCCA+AGG + chr3_1:92162552-92162571 None:intergenic 45.0%
TGTGCTTTGACGGTAAGTGT+TGG + chr3_1:92163614-92163633 None:intergenic 45.0%
CGTCCAAGAAATCAAACCCT+AGG - chr3_1:92163669-92163688 Msa0388040:intron 45.0%
!! GAATATTTCGTTTCTGGCGG+TGG + chr3_1:92164048-92164067 None:intergenic 45.0%
GTCACAATGGGTCTTACTGT+TGG - chr3_1:92164105-92164124 Msa0388040:intron 45.0%
AACGGCGATTTAGATGGGAA+TGG + chr3_1:92164144-92164163 None:intergenic 45.0%
ATCGCCGTTAGTTATTAGGG+AGG - chr3_1:92164155-92164174 Msa0388040:intron 45.0%
AGGGAGGATCCTATTGCTTA+TGG - chr3_1:92164171-92164190 Msa0388040:intron 45.0%
GTTCTCATATGCCAACACTC+AGG - chr3_1:92164334-92164353 Msa0388040:intron 45.0%
CAATGTACTCTCCTGAGTGT+TGG + chr3_1:92164348-92164367 None:intergenic 45.0%
AGGAGAAAACTGCCAACACA+AGG + chr3_1:92164859-92164878 None:intergenic 45.0%
GCCACAATTTCCCTCTTCAT+TGG - chr3_1:92165112-92165131 Msa0388040:intron 45.0%
CCCAATGAAGAGGGAAATTG+TGG + chr3_1:92165116-92165135 None:intergenic 45.0%
! GCGTTATTTCCCCAATGAAG+AGG + chr3_1:92165126-92165145 None:intergenic 45.0%
ACCCAAAGTAGCCAACAATC+CGG - chr3_1:92165149-92165168 Msa0388040:intron 45.0%
! TCCGGATTGTTGGCTACTTT+GGG + chr3_1:92165153-92165172 None:intergenic 45.0%
! ATCCGGATTGTTGGCTACTT+TGG + chr3_1:92165154-92165173 None:intergenic 45.0%
CCTAAGTGTATCCGGATTGT+TGG + chr3_1:92165163-92165182 None:intergenic 45.0%
CCAACAATCCGGATACACTT+AGG - chr3_1:92165160-92165179 Msa0388040:intron 45.0%
GATCATGAGAGATCCTGACA+CGG - chr3_1:92165685-92165704 Msa0388040:intron 45.0%
ATCATGAGAGATCCTGACAC+GGG - chr3_1:92165686-92165705 Msa0388040:intron 45.0%
AGCTAATGAAGCCAAAGCCT+CGG + chr3_1:92165718-92165737 None:intergenic 45.0%
GGCATCTGATTCAGCTATTG+AGG - chr3_1:92165751-92165770 Msa0388040:intron 45.0%
! ATTTTTGCATGGCAGTGGCA+CGG - chr3_1:92166852-92166871 Msa0388040:intron 45.0%
ACACATCTCTCCCATGTTTG+CGG + chr3_1:92166889-92166908 None:intergenic 45.0%
TTGTCACCTCTCTCAATCTC+GGG - chr3_1:92167288-92167307 Msa0388040:intron 45.0%
!! CTTTTAGAGGGTGGTTGCTT+TGG + chr3_1:92168116-92168135 None:intergenic 45.0%
GGGATGTCTGATGTTGGAAT+GGG + chr3_1:92168567-92168586 None:intergenic 45.0%
AGGGATGTCTGATGTTGGAA+TGG + chr3_1:92168568-92168587 None:intergenic 45.0%
TGGATAGGGATGTCTGATGT+TGG + chr3_1:92168573-92168592 None:intergenic 45.0%
TGTCTGAGTCGTGATGAGTT+TGG + chr3_1:92168650-92168669 None:intergenic 45.0%
ATGGATCGAGGTCATCTACT+TGG + chr3_1:92168683-92168702 None:intergenic 45.0%
! TCCTCTGAGAATACTAGTGG+AGG - chr3_1:92168774-92168793 Msa0388040:intron 45.0%
TCCTCCACTAGTATTCTCAG+AGG + chr3_1:92168778-92168797 None:intergenic 45.0%
TCTTGCGTGATAATTGTGGC+CGG + chr3_1:92168806-92168825 None:intergenic 45.0%
GAATTCCAGTAGTGTGTCGT+CGG - chr3_1:92168824-92168843 Msa0388040:CDS 45.0%
! AAGTCACTACACGCCCTTTT+CGG + chr3_1:92168857-92168876 None:intergenic 45.0%
TGATACCAAGCATCCAGAGA+CGG - chr3_1:92168911-92168930 Msa0388040:intron 45.0%
ATTATCTGCGAGAGAAGCAG+TGG - chr3_1:92168941-92168960 Msa0388040:intron 45.0%
ATAGAGAGATGGGGTTGGAA+GGG - chr3_1:92169054-92169073 Msa0388040:CDS 45.0%
! TGAAGATGGGGAAAGTGCAT+TGG - chr3_1:92169139-92169158 Msa0388040:exon 45.0%
!!! TAAAACATTTAAAATTATTT+CGG - chr3_1:92165983-92166002 Msa0388040:intron 5.0%
AGCACACAGTACGATACAGC+GGG + chr3_1:92161519-92161538 None:intergenic 50.0%
GAGCACACAGTACGATACAG+CGG + chr3_1:92161520-92161539 None:intergenic 50.0%
TTCGAGTCGTCATCCTTCAC+CGG + chr3_1:92161555-92161574 None:intergenic 50.0%
GAATCTGCTCGGGCAACATT+CGG - chr3_1:92161594-92161613 Msa0388040:CDS 50.0%
CAAGATGCCACTGCTTACGT+CGG - chr3_1:92161628-92161647 Msa0388040:CDS 50.0%
TCTCGACCCTCAGATTTCTG+AGG - chr3_1:92161654-92161673 Msa0388040:CDS 50.0%
! GTCGGGGCAAACCTTTTCAT+TGG - chr3_1:92162982-92163001 Msa0388040:intron 50.0%
AAGTATCCAGCTAGCAGCAG+TGG - chr3_1:92163247-92163266 Msa0388040:intron 50.0%
CATTAACCACTGCTGCTAGC+TGG + chr3_1:92163256-92163275 None:intergenic 50.0%
CTTACCGTCAAAGCACAGAC+CGG - chr3_1:92163617-92163636 Msa0388040:intron 50.0%
ACTACCGGTCTGTGCTTTGA+CGG + chr3_1:92163624-92163643 None:intergenic 50.0%
!! TATTTCGTTTCTGGCGGTGG+TGG + chr3_1:92164045-92164064 None:intergenic 50.0%
! CAAACTAACGGACGGCATGA+GGG + chr3_1:92164208-92164227 None:intergenic 50.0%
! ACAAACTAACGGACGGCATG+AGG + chr3_1:92164209-92164228 None:intergenic 50.0%
!! GGAAGGTTGGTAAGGTTGCA+AGG + chr3_1:92164586-92164605 None:intergenic 50.0%
AATCGGGTCTCTATCTGCCA+TGG - chr3_1:92165075-92165094 Msa0388040:intron 50.0%
TCTATCTGCCATGGAAGCTG+AGG - chr3_1:92165084-92165103 Msa0388040:intron 50.0%
GAAGAGGGAAATTGTGGCAC+TGG + chr3_1:92165110-92165129 None:intergenic 50.0%
! CTAACTTGTGGACCTGTCTC+AGG + chr3_1:92165419-92165438 None:intergenic 50.0%
TCATGAGAGATCCTGACACG+GGG - chr3_1:92165687-92165706 Msa0388040:intron 50.0%
GCTAATGAAGCCAAAGCCTC+GGG + chr3_1:92165717-92165736 None:intergenic 50.0%
GACACTAAAGGCGAAAGGCA+CGG - chr3_1:92166445-92166464 Msa0388040:intron 50.0%
TGTCACCTCTCTCAATCTCG+GGG - chr3_1:92167289-92167308 Msa0388040:intron 50.0%
TCGGGGACTCAATGTATCCA+AGG - chr3_1:92167306-92167325 Msa0388040:intron 50.0%
TTTGGCGTTGTAGAGCTTGG+CGG + chr3_1:92168098-92168117 None:intergenic 50.0%
TGCTTTGGCGTTGTAGAGCT+TGG + chr3_1:92168101-92168120 None:intergenic 50.0%
!! AGGGTTCGACTTTTAGAGGG+TGG + chr3_1:92168125-92168144 None:intergenic 50.0%
! GGGATTCATCTGATGGATCG+AGG + chr3_1:92168695-92168714 None:intergenic 50.0%
GGAGCATGGGATTCATCTGA+TGG + chr3_1:92168702-92168721 None:intergenic 50.0%
!! GTGAATTTTGGCCTGCTAGC+TGG + chr3_1:92168723-92168742 None:intergenic 50.0%
AGCAGGCCAAAATTCACTCG+TGG - chr3_1:92168726-92168745 Msa0388040:intron 50.0%
GCAGGCCAAAATTCACTCGT+GGG - chr3_1:92168727-92168746 Msa0388040:intron 50.0%
! GAGCTCCCACGAGTGAATTT+TGG + chr3_1:92168735-92168754 None:intergenic 50.0%
TCGTCGGATCCATTCCGAAA+AGG - chr3_1:92168840-92168859 Msa0388040:CDS 50.0%
CGTCGGATCCATTCCGAAAA+GGG - chr3_1:92168841-92168860 Msa0388040:CDS 50.0%
! ACTACACGCCCTTTTCGGAA+TGG + chr3_1:92168852-92168871 None:intergenic 50.0%
GGATGCTTGGTATCATCGTC+TGG + chr3_1:92168906-92168925 None:intergenic 50.0%
GATACCAAGCATCCAGAGAC+GGG - chr3_1:92168912-92168931 Msa0388040:intron 50.0%
ATACCAAGCATCCAGAGACG+GGG - chr3_1:92168913-92168932 Msa0388040:intron 50.0%
AGGGGAGACTGATAGAGAGA+TGG - chr3_1:92169043-92169062 Msa0388040:CDS 50.0%
GGGGAGACTGATAGAGAGAT+GGG - chr3_1:92169044-92169063 Msa0388040:CDS 50.0%
GGGAGACTGATAGAGAGATG+GGG - chr3_1:92169045-92169064 Msa0388040:CDS 50.0%
GACTGATAGAGAGATGGGGT+TGG - chr3_1:92169049-92169068 Msa0388040:CDS 50.0%
GATAGAGAGATGGGGTTGGA+AGG - chr3_1:92169053-92169072 Msa0388040:CDS 50.0%
!! GAAGCATAAGGGCACTGCTT+TGG - chr3_1:92169187-92169206 Msa0388040:five_prime_UTR 50.0%
GATGTGTTCAAGGGAGCTTC+TGG - chr3_1:92169235-92169254 Msa0388040:five_prime_UTR 50.0%
! AAGGGAGCTTCTGGTTGCTA+AGG - chr3_1:92169244-92169263 Msa0388040:five_prime_UTR 50.0%
! AGGGAGCTTCTGGTTGCTAA+GGG - chr3_1:92169245-92169264 Msa0388040:five_prime_UTR 50.0%
ACACAGTACGATACAGCGGG+GGG + chr3_1:92161516-92161535 None:intergenic 55.0%
CACACAGTACGATACAGCGG+GGG + chr3_1:92161517-92161536 None:intergenic 55.0%
GCACACAGTACGATACAGCG+GGG + chr3_1:92161518-92161537 None:intergenic 55.0%
CGTACTGTGTGCTCTGCTTC+CGG - chr3_1:92161526-92161545 Msa0388040:CDS 55.0%
GATGACGACTCGAATTGCGC+CGG - chr3_1:92161561-92161580 Msa0388040:CDS 55.0%
ATGACGACTCGAATTGCGCC+GGG - chr3_1:92161562-92161581 Msa0388040:CDS 55.0%
AGCAGATTCGCACCAACACC+CGG + chr3_1:92161583-92161602 None:intergenic 55.0%
!! GGTGTTGGTGCGAATCTGCT+CGG - chr3_1:92161583-92161602 Msa0388040:CDS 55.0%
! GTGTTGGTGCGAATCTGCTC+GGG - chr3_1:92161584-92161603 Msa0388040:CDS 55.0%
CGACGTAAGCAGTGGCATCT+TGG + chr3_1:92161630-92161649 None:intergenic 55.0%
GAGATTGCCGACGTAAGCAG+TGG + chr3_1:92161638-92161657 None:intergenic 55.0%
TGAGTCCCCGAGATTGAGAG+AGG + chr3_1:92167297-92167316 None:intergenic 55.0%
GAGCAAGCGAGAGAAGCTAG+CGG - chr3_1:92168022-92168041 Msa0388040:intron 55.0%
AGCAAGCGAGAGAAGCTAGC+GGG - chr3_1:92168023-92168042 Msa0388040:intron 55.0%
AAGCTTCGGCTAAAGCGTGC+TGG - chr3_1:92168519-92168538 Msa0388040:intron 55.0%
!! TAAAGCGTGCTGGCTCTGCT+TGG - chr3_1:92168529-92168548 Msa0388040:intron 55.0%
AATCCCATGCTCCAGCTAGC+AGG - chr3_1:92168709-92168728 Msa0388040:intron 55.0%
TGGATCCGACGACACACTAC+TGG + chr3_1:92168832-92168851 None:intergenic 55.0%
TCGAGACAGCTTCGACGATG+AGG - chr3_1:92168878-92168897 Msa0388040:intron 55.0%
ATCTGCGAGAGAAGCAGTGG+CGG - chr3_1:92168944-92168963 Msa0388040:intron 55.0%
ACCTCCGACGATGTCGTTGA+TGG - chr3_1:92169013-92169032 Msa0388040:CDS 55.0%
TCCATCAACGACATCGTCGG+AGG + chr3_1:92169017-92169036 None:intergenic 55.0%
AGATGGGGTTGGAAGGGTCA+AGG - chr3_1:92169060-92169079 Msa0388040:CDS 55.0%
AGTACGATACAGCGGGGGGA+GGG + chr3_1:92161512-92161531 None:intergenic 60.0%
ACTCGAATTGCGCCGGGTGT+TGG - chr3_1:92161568-92161587 Msa0388040:CDS 60.0%
TCTGCTCGGGCAACATTCGG+CGG - chr3_1:92161597-92161616 Msa0388040:CDS 60.0%
!! TTCGTTTCTGGCGGTGGTGG+TGG + chr3_1:92164042-92164061 None:intergenic 60.0%
ACGGGGAATTCCCGAGGCTT+TGG - chr3_1:92165704-92165723 Msa0388040:intron 60.0%
AGAGCTTGGCGGTGTAGAGC+CGG + chr3_1:92168087-92168106 None:intergenic 60.0%
TGGCCTGCTAGCTGGAGCAT+GGG + chr3_1:92168715-92168734 None:intergenic 60.0%
TTGGCCTGCTAGCTGGAGCA+TGG + chr3_1:92168716-92168735 None:intergenic 60.0%
CAAGCATCCAGAGACGGGGA+GGG - chr3_1:92168917-92168936 Msa0388040:intron 60.0%
GATAATGCCCTCCCCGTCTC+TGG + chr3_1:92168927-92168946 None:intergenic 60.0%
AGCAGTGGCGGCACAAGAAG+CGG - chr3_1:92168956-92168975 Msa0388040:intron 60.0%
AGAAGCGGCAGAAGCTGCAG+CGG - chr3_1:92168971-92168990 Msa0388040:intron 60.0%
AGCGGGGGGAGGGGAAGTTA+GGG + chr3_1:92161502-92161521 None:intergenic 65.0%
GTACGATACAGCGGGGGGAG+GGG + chr3_1:92161511-92161530 None:intergenic 65.0%
CAGTACGATACAGCGGGGGG+AGG + chr3_1:92161513-92161532 None:intergenic 65.0%
TGTGCTCTGCTTCCGGCTGC+CGG - chr3_1:92161533-92161552 Msa0388040:CDS 65.0%
CGTCATCCTTCACCGGCAGC+CGG + chr3_1:92161548-92161567 None:intergenic 65.0%
TCGGGCAACATTCGGCGGAG+AGG - chr3_1:92161602-92161621 Msa0388040:CDS 65.0%
!! GGCACTGGCCTCAGCTTCCA+TGG + chr3_1:92165095-92165114 None:intergenic 65.0%
CCTCGGGAATTCCCCGTGTC+AGG + chr3_1:92165701-92165720 None:intergenic 65.0%
CCTGACACGGGGAATTCCCG+AGG - chr3_1:92165698-92165717 Msa0388040:intron 65.0%
GAGCTTGGCGGTGTAGAGCC+GGG + chr3_1:92168086-92168105 None:intergenic 65.0%
CCTCCCCGTCTCTGGATGCT+TGG + chr3_1:92168919-92168938 None:intergenic 65.0%
CCAAGCATCCAGAGACGGGG+AGG - chr3_1:92168916-92168935 Msa0388040:intron 65.0%
AGAAGCTGCAGCGGAGGCTG+AGG - chr3_1:92168980-92168999 Msa0388040:intron 65.0%
CAGCGGGGGGAGGGGAAGTT+AGG + chr3_1:92161503-92161522 None:intergenic 70.0%
CTGCTTCCGGCTGCCGGTGA+AGG - chr3_1:92161539-92161558 Msa0388040:CDS 70.0%
AGCGGCAGAAGCTGCAGCGG+AGG - chr3_1:92168974-92168993 Msa0388040:intron 70.0%
GCGGAGGCTGAGGCTGCAAC+AGG - chr3_1:92168990-92169009 Msa0388040:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 92161388 92169319 92161388 ID=Msa0388040;Name=Msa0388040
chr3_1 mRNA 92161388 92169319 92161388 ID=Msa0388040-mRNA-1;Parent=Msa0388040;Name=Msa0388040-mRNA-1;_AED=0.03;_eAED=0.03;_QI=174|0.62|0.55|1|1|1|9|0|539
chr3_1 exon 92161388 92162199 92161388 ID=Msa0388040-mRNA-1:exon:25910;Parent=Msa0388040-mRNA-1
chr3_1 exon 92162519 92162728 92162519 ID=Msa0388040-mRNA-1:exon:25909;Parent=Msa0388040-mRNA-1
chr3_1 exon 92164241 92164322 92164241 ID=Msa0388040-mRNA-1:exon:25908;Parent=Msa0388040-mRNA-1
chr3_1 exon 92164935 92165021 92164935 ID=Msa0388040-mRNA-1:exon:25907;Parent=Msa0388040-mRNA-1
chr3_1 exon 92167521 92167586 92167521 ID=Msa0388040-mRNA-1:exon:25906;Parent=Msa0388040-mRNA-1
chr3_1 exon 92167690 92167752 92167690 ID=Msa0388040-mRNA-1:exon:25905;Parent=Msa0388040-mRNA-1
chr3_1 exon 92168661 92168717 92168661 ID=Msa0388040-mRNA-1:exon:25904;Parent=Msa0388040-mRNA-1
chr3_1 exon 92168797 92168885 92168797 ID=Msa0388040-mRNA-1:exon:25903;Parent=Msa0388040-mRNA-1
chr3_1 exon 92168992 92169319 92168992 ID=Msa0388040-mRNA-1:exon:25902;Parent=Msa0388040-mRNA-1
chr3_1 five_prime_UTR 92169146 92169319 92169146 ID=Msa0388040-mRNA-1:five_prime_utr;Parent=Msa0388040-mRNA-1
chr3_1 CDS 92168992 92169145 92168992 ID=Msa0388040-mRNA-1:cds;Parent=Msa0388040-mRNA-1
chr3_1 CDS 92168797 92168885 92168797 ID=Msa0388040-mRNA-1:cds;Parent=Msa0388040-mRNA-1
chr3_1 CDS 92168661 92168717 92168661 ID=Msa0388040-mRNA-1:cds;Parent=Msa0388040-mRNA-1
chr3_1 CDS 92167690 92167752 92167690 ID=Msa0388040-mRNA-1:cds;Parent=Msa0388040-mRNA-1
chr3_1 CDS 92167521 92167586 92167521 ID=Msa0388040-mRNA-1:cds;Parent=Msa0388040-mRNA-1
chr3_1 CDS 92164935 92165021 92164935 ID=Msa0388040-mRNA-1:cds;Parent=Msa0388040-mRNA-1
chr3_1 CDS 92164241 92164322 92164241 ID=Msa0388040-mRNA-1:cds;Parent=Msa0388040-mRNA-1
chr3_1 CDS 92162519 92162728 92162519 ID=Msa0388040-mRNA-1:cds;Parent=Msa0388040-mRNA-1
chr3_1 CDS 92161388 92162199 92161388 ID=Msa0388040-mRNA-1:cds;Parent=Msa0388040-mRNA-1
Gene Sequence

>Msa0388040

ATGACGACTCGAATTGCGCCGGGTGTTGGTGCGAATCTGCTCGGGCAACATTCGGCGGAGAGGAACCAAGATGCCACTGCTTACGTCGGCAATCTCGACCCTCAGATTTCTGAGGAGTTATTGTGGGAGCTTTTTGTTCAAGCTGGTCCAGTAGTTAATGTGTATGTTCCAAAGGATAGAGTCACTAATCAACATCAAGGTTATGGATTTGTTGAATTCCGCAGCGAAGAAGATGCTGATTATGCCATTAAAGTACTTAACATGATTAAACTTTATGGAAAACCAATTCGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTCGGGGCAAACCTTTTCATTGGCAATCTCGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCCAAGATCATGAGAGATCCTGACACGGGGAATTCCCGAGGCTTTGGCTTCATTAGCTACGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAGTATCTTTGCAATCGTCAAATTACAGTGTCGTATGCTTATAAGAAAGACACTAAAGGCGAAAGGCACGGTCATCGGGAAAGAACATTTTATGAGGAAATGTCAGCTGCGGAGAGCAAGCGAGAGAAGCTAGCGGGCTTGTCTCTTGACGACATCTTAGCGAATCAACAAAGACCCGGCTCTACACCGCCAAGCTCTACAACGCCAAAGCAACCACCCTCTAAAAGTCGAACCCTCATAGACATCATCAAAGACGACGAAACCAACAAAAAGATCGCAGCCTTTAAAGACAAGCTTCGGCTAAAGCGTGCTGGCTCTGCTTGGACATCATCTATTCCCATTCCAACATCAGACATCCCTATCCAAAATCCAAACAGCAGAAGCTTTTCACAATTCGGTCGTCGCAACTCAGTTCGAGTCCAAACTCATCACGACTCAGACATGTCAACACACCAAGTAGATGACCTCGATCCATCAGATGAATCCCATGCTCCAGCTAGCAGGCCAAAATTCACTCGTGGGAGCTCAACTCGTTTCACGACAGATTCCTCTGAGAATACTAGTGGAGGAAATCTCCGGCCACAATTATCACGCAAGAATTCCAGTAGTGTGTCGTCGGATCCATTCCGAAAAGGGCGTGTAGTGACTTTTCGAGACAGCTTCGACGATGAGGAGCCAGACGATGATACCAAGCATCCAGAGACGGGGAGGGCATTATCTGCGAGAGAAGCAGTGGCGGCACAAGAAGCGGCAGAAGCTGCAGCGGAGGCTGAGGCTGCAACAGGACCTCCGACGATGTCGTTGATGGATTTGTTAGGGGAGACTGATAGAGAGATGGGGTTGGAAGGGTCAAGGTATATATTAAGTGATGAGGAAGATTTTTCTGATGATGATTATGAAGGTGAAGATGATGAAGATGGGGAAAGTGCATTGGAACACACTTGTTCTATTTGCATGGTGAAGCATAAGGGCACTGCTTTGGCAGCTTGTAGCCATAGTTTTTGTAGGATGTGTTCAAGGGAGCTTCTGGTTGCTAAGGGAAATTGTCCACTTTGTAATAATTTCGTTTTAGAGATTCTTGAGATTTTTTGA
Protein sequence

>Msa0388040

MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGHRERTFYEEMSAAESKREKLAGLSLDDILANQQRPGSTPPSSTTPKQPPSKSRTLIDIIKDDETNKKIAAFKDKLRLKRAGSAWTSSIPIPTSDIPIQNPNSRSFSQFGRRNSVRVQTHHDSDMSTHQVDDLDPSDESHAPASRPKFTRGSSTRFTTDSSENTSGGNLRPQLSRKNSSSVSSDPFRKGRVVTFRDSFDDEEPDDDTKHPETGRALSAREAVAAQEAAEAAAEAEAATGPPTMSLMDLLGETDREMGLEGSRYILSDEEDFSDDDYEGEDDEDGESALEHTCSICMVKHKGTALAACSHSFCRMCSRELLVAKGNCPLCNNFVLEILEIF*