AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0128120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128120 MtrunA17_Chr1g0194631 98.682 759 9 1 50 807 1 759 0.0 1561
Msa0128120 MtrunA17_Chr5g0401921 47.156 844 366 16 16 803 42 861 0.0 681
Msa0128120 MtrunA17_Chr7g0235081 57.224 353 132 9 462 805 4 346 2.12e-126 382
Msa0128120 MtrunA17_Chr7g0270001 64.000 275 90 5 541 806 25 299 8.79e-112 342
Msa0128120 MtrunA17_Chr7g0235091 37.631 287 155 5 50 335 1 264 1.46e-55 194
Msa0128120 MtrunA17_Chr7g0270011 53.659 123 52 1 179 301 70 187 2.02e-36 140
Msa0128120 MtrunA17_Chr7g0270011 67.273 55 17 1 441 495 231 284 2.98e-15 77.8
Msa0128120 MtrunA17_Chr8g0347071 39.344 122 71 2 660 778 808 929 4.02e-21 99.4
Msa0128120 MtrunA17_Chr2g0297191 38.710 124 73 2 654 774 1027 1150 6.02e-21 99.0
Msa0128120 MtrunA17_Chr7g0275611 36.879 141 74 3 660 797 823 951 3.26e-20 96.3
Msa0128120 MtrunA17_Chr1g0147121 35.200 125 78 2 657 778 890 1014 7.79e-20 95.1
Msa0128120 MtrunA17_Chr3g0126701 36.885 122 74 2 660 778 922 1043 1.38e-19 94.4
Msa0128120 MtrunA17_Chr7g0221611 39.496 119 68 3 658 772 904 1022 1.10e-17 88.2
Msa0128120 MtrunA17_Chr1g0201621 37.405 131 79 2 647 774 72 202 1.20e-17 86.7
Msa0128120 MtrunA17_Chr1g0201311 37.405 131 79 2 647 774 72 202 2.77e-17 85.9
Msa0128120 MtrunA17_Chr2g0305371 31.579 152 93 4 624 772 306 449 1.53e-15 80.5
Msa0128120 MtrunA17_Chr5g0405161 45.652 92 43 3 206 296 12 97 2.15e-15 76.3
Msa0128120 MtrunA17_Chr5g0405161 49.398 83 39 2 413 495 89 168 1.17e-14 74.3
Msa0128120 MtrunA17_Chr1g0149581 31.496 127 80 2 655 774 1517 1643 2.48e-14 77.8
Msa0128120 MtrunA17_Chr1g0149611 33.913 115 69 2 665 772 369 483 4.08e-14 75.9
Msa0128120 MtrunA17_Chr6g0477001 33.577 137 85 4 648 778 101 237 1.21e-13 73.2
Msa0128120 MtrunA17_Chr5g0403241 28.276 145 86 2 648 774 1341 1485 7.00e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128120 AT4G02020.1 55.938 842 304 15 14 807 34 856 0.0 863
Msa0128120 AT4G02020.4 54.151 783 293 14 14 749 34 797 0.0 766
Msa0128120 AT4G02020.3 52.848 755 290 14 14 721 34 769 0.0 715
Msa0128120 AT4G02020.2 52.848 755 290 14 14 721 34 769 0.0 715
Msa0128120 AT2G23380.2 61.905 420 141 11 395 803 262 673 2.46e-163 489
Msa0128120 AT2G23380.2 60.000 65 26 0 234 298 30 94 3.41e-18 89.7
Msa0128120 AT2G23380.1 61.905 420 141 11 395 803 489 900 8.81e-162 493
Msa0128120 AT2G23380.1 39.748 317 160 6 3 298 15 321 1.39e-53 201
Msa0128120 AT1G02580.1 47.583 393 172 7 411 797 323 687 5.85e-117 370
Msa0128120 AT1G02580.1 30.000 330 188 10 1 301 1 316 2.17e-24 109
Msa0128120 AT1G02580.2 43.382 272 125 5 411 680 323 567 7.99e-66 230
Msa0128120 AT1G02580.2 30.000 330 188 10 1 301 1 316 2.88e-24 108
Msa0128120 AT5G42400.7 38.583 127 75 2 651 774 1241 1367 2.89e-21 100
Msa0128120 AT5G42400.2 38.583 127 75 2 651 774 1241 1367 2.89e-21 100
Msa0128120 AT5G42400.8 38.583 127 75 2 651 774 1241 1367 2.89e-21 100
Msa0128120 AT5G42400.5 38.583 127 75 2 651 774 1241 1367 2.89e-21 100
Msa0128120 AT5G42400.4 38.583 127 75 2 651 774 1241 1367 2.89e-21 100
Msa0128120 AT5G42400.1 38.583 127 75 2 651 774 1241 1367 2.89e-21 100
Msa0128120 AT5G42400.3 38.583 127 75 2 651 774 1241 1367 2.89e-21 100
Msa0128120 AT5G42400.6 38.583 127 75 2 651 774 1241 1367 2.89e-21 100
Msa0128120 AT4G27910.1 37.302 126 76 2 657 779 883 1008 5.30e-21 99.4
Msa0128120 AT4G30860.1 34.940 166 92 6 613 772 287 442 7.25e-20 94.4
Msa0128120 AT2G31650.1 42.017 119 65 3 658 772 897 1015 2.32e-19 94.4
Msa0128120 AT5G53430.1 36.000 125 77 2 657 778 899 1023 3.18e-19 93.6
Msa0128120 AT3G61740.2 35.484 124 76 2 660 779 840 963 3.75e-18 90.1
Msa0128120 AT3G61740.1 35.484 124 76 2 660 779 876 999 4.07e-18 90.1
Msa0128120 AT1G76710.4 36.923 130 79 2 648 774 78 207 1.82e-17 87.0
Msa0128120 AT1G05830.2 40.336 119 67 3 658 772 918 1036 1.87e-17 88.2
Msa0128120 AT1G05830.4 40.336 119 67 3 658 772 918 1036 1.87e-17 88.2
Msa0128120 AT1G05830.1 40.336 119 67 3 658 772 918 1036 1.87e-17 88.2
Msa0128120 AT1G05830.3 40.336 119 67 3 658 772 918 1036 1.87e-17 88.2
Msa0128120 AT1G76710.3 36.923 130 79 2 648 774 78 207 2.13e-17 86.7
Msa0128120 AT1G76710.2 36.923 130 79 2 648 774 78 207 2.20e-17 86.7
Msa0128120 AT1G76710.1 36.923 130 79 2 648 774 78 207 2.20e-17 86.7
Msa0128120 AT3G59960.3 33.333 129 80 4 656 778 108 236 6.23e-15 76.6
Msa0128120 AT3G59960.2 33.333 129 80 4 656 778 108 236 6.23e-15 76.6
Msa0128120 AT3G59960.4 33.333 129 80 4 656 778 108 236 6.23e-15 76.6
Msa0128120 AT3G59960.1 33.333 129 80 4 656 778 108 236 9.61e-15 76.6
Msa0128120 AT2G44150.1 33.333 129 80 4 656 778 113 241 5.19e-13 72.0
Msa0128120 AT1G77300.1 31.844 179 106 6 599 774 979 1144 4.14e-12 70.9
Msa0128120 AT1G77300.2 34.615 130 82 3 648 774 1015 1144 5.41e-12 70.5

Find 219 sgRNAs with CRISPR-Local

Find 613 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAACATGTTTGCTTATT+TGG 0.044313 1_3:+57760413 Msa0128120:three_prime_UTR
TGCTAATATGCCTTAAATTA+TGG 0.152574 1_3:+57760257 Msa0128120:three_prime_UTR
AAATGACAAACTTACCTTAA+TGG 0.162835 1_3:-57751899 None:intergenic
TTGGGGAAGTCTGATGTTTC+TGG 0.176477 1_3:+57758950 Msa0128120:CDS
GATATATCTATTTCTCTATT+AGG 0.205796 1_3:-57760461 None:intergenic
AAGGATTGTTCTTGTCTTAA+TGG 0.220999 1_3:+57756464 Msa0128120:CDS
GTCTCATTTGTGACAGCTTT+TGG 0.239771 1_3:-57754518 None:intergenic
TGTACCCTACCCATAATTTA+AGG 0.252829 1_3:-57760267 None:intergenic
CAAGGAAGTTTAAATATTCT+TGG 0.253650 1_3:+57756342 Msa0128120:CDS
CGTCCTTTATGTAAATTCTA+TGG 0.261939 1_3:+57752325 Msa0128120:CDS
TATGACATTGCAGCTTCTTC+TGG 0.297074 1_3:-57752213 None:intergenic
TGGATGGGGAGCCTTCTTAA+AGG 0.301212 1_3:+57758970 Msa0128120:CDS
GAACGAGTTGATGGAATTCT+TGG 0.315350 1_3:+57754572 Msa0128120:CDS
ATAGCTAGGAACTTACTTTC+TGG 0.330151 1_3:+57755266 Msa0128120:CDS
TTGCCCTGGTTTCTGTCTCC+TGG 0.332763 1_3:-57752361 None:intergenic
GATTACCTGGATTTCTAAAC+TGG 0.334427 1_3:-57753192 None:intergenic
CGAGAGAATTCAATCCATTA+AGG 0.335586 1_3:+57751885 Msa0128120:CDS
TTACAAGAATCCTGAGAATC+AGG 0.335745 1_3:-57754425 None:intergenic
TTCACCTTTGCATAGCAGTT+GGG 0.335759 1_3:-57759481 None:intergenic
CTGCTGGTCACCCAACAATA+TGG 0.336522 1_3:+57756369 Msa0128120:CDS
GGTACAGTGAGATAATAAAA+TGG 0.344180 1_3:+57760284 Msa0128120:three_prime_UTR
TTCAATTCTTTCCTCAAGAA+TGG 0.355699 1_3:+57752300 Msa0128120:CDS
AGTATCAGAGAAAGTAATAT+TGG 0.369713 1_3:+57753365 Msa0128120:CDS
GCTAATATGCCTTAAATTAT+GGG 0.372892 1_3:+57760258 Msa0128120:three_prime_UTR
CACAGGTCTATTATTTCAGC+TGG 0.378581 1_3:+57755347 Msa0128120:CDS
GAATTCTTGGTTTCTCAGAT+TGG 0.379032 1_3:+57754585 Msa0128120:CDS
AAGCTGCAATGTCATACTTC+AGG 0.381738 1_3:+57752220 Msa0128120:CDS
CTCAGCAACCTCGGTCTAGA+TGG 0.384033 1_3:-57756305 None:intergenic
TTGCAACTGATTTATCTTGT+TGG 0.384750 1_3:-57751848 None:intergenic
GCCCATGGAGGTGCTTGATC+TGG 0.396645 1_3:-57760021 None:intergenic
CTCTTCTATGATTATTGCTA+TGG 0.397112 1_3:+57759997 Msa0128120:CDS
GGTTTCTGTCTCCTGGACCC+TGG 0.403366 1_3:-57752354 None:intergenic
CTATAGGTAATGTTGGTTGC+TGG 0.407659 1_3:+57759922 Msa0128120:intron
AATTGCTGATTCGTCTCTCT+TGG 0.412706 1_3:-57760061 None:intergenic
ATAGATATATCTTTCTTTGA+GGG 0.417170 1_3:+57760473 Msa0128120:three_prime_UTR
TGGAAATGTTTGGCAGAAAC+AGG 0.418632 1_3:+57754642 Msa0128120:CDS
AAGGTTCCCACATCATCATT+TGG 0.421371 1_3:-57751823 None:intergenic
CAGCATACAAGAACAACAAC+AGG 0.423932 1_3:+57751583 Msa0128120:five_prime_UTR
ACTCAGAAAACTTGAGTAAA+CGG 0.424610 1_3:+57754354 Msa0128120:CDS
TAATAGCAAGAGCTTACATT+TGG 0.424724 1_3:+57754490 Msa0128120:CDS
TTGAAGGGAGTGGAAATGTT+TGG 0.426717 1_3:+57754632 Msa0128120:CDS
CAACAGTTTCGACAGACATC+TGG 0.427301 1_3:-57757061 None:intergenic
TATTTCAGCTGGTTCAATCA+TGG 0.427476 1_3:+57755358 Msa0128120:CDS
GAGTATACTGCATGCAAGAT+TGG 0.429208 1_3:-57756415 None:intergenic
AATTTCTAGTATGGCATTTG+AGG 0.432378 1_3:+57753115 Msa0128120:intron
TGTCTCTGTTGAGAATATAC+TGG 0.432860 1_3:-57760164 None:intergenic
CTCCGTCTGTGAAGAGTCCC+TGG 0.432892 1_3:-57752263 None:intergenic
AGAGTGAAAAGAAGACAGTT+TGG 0.433099 1_3:+57753717 Msa0128120:intron
AATAGATATATCTTTCTTTG+AGG 0.433167 1_3:+57760472 Msa0128120:three_prime_UTR
GTTTCTGTCTCCTGGACCCT+GGG 0.433547 1_3:-57752353 None:intergenic
TGGTGATCAGTGCTACCTTC+AGG 0.436446 1_3:+57753769 Msa0128120:CDS
ATGTTGTTAGCAAGTATGTT+GGG 0.438742 1_3:+57753165 Msa0128120:CDS
CAGCTGTGGGGATGGTACAC+TGG 0.439264 1_3:+57758742 Msa0128120:intron
TCAATGGAAGAACGAGTTGA+TGG 0.443369 1_3:+57754563 Msa0128120:CDS
TTCTCTAGATACATGCTCAT+AGG 0.445332 1_3:-57753431 None:intergenic
CTTAATGGATTGAATTCTCT+CGG 0.445675 1_3:-57751884 None:intergenic
AAGATCGCTTCCTGATTCTC+AGG 0.449551 1_3:+57754415 Msa0128120:CDS
CATTGGCCATGGCTCATCAA+TGG 0.453407 1_3:-57760113 None:intergenic
CACAATGGCAACCTCTGAAC+CGG 0.454848 1_3:-57756979 None:intergenic
ATTCACCTTTGCATAGCAGT+TGG 0.455961 1_3:-57759482 None:intergenic
GTTCGAAGAGCTGCAAGAAC+CGG 0.461634 1_3:+57756960 Msa0128120:CDS
ACTGCCAGGTTCTTCTGCAC+TGG 0.463190 1_3:-57754270 None:intergenic
GACAAACTCGTGACATCTCA+TGG 0.464677 1_3:+57760183 Msa0128120:three_prime_UTR
TCGTCTCTCTTGGAACCCTC+AGG 0.464748 1_3:-57760051 None:intergenic
AGAGAAAGAGTTATACTTGA+AGG 0.465034 1_3:+57754616 Msa0128120:CDS
TTTAGAAATTGGGTTGGGTG+TGG 0.466371 1_3:-57751419 None:intergenic
AGAGTAGAGTAGAGTAGAGT+CGG 0.466372 1_3:-57751511 None:intergenic
TACTAACTTACCACAAAATA+CGG 0.467763 1_3:-57752781 None:intergenic
ATTAATCATAACCTTTAAGA+AGG 0.469624 1_3:-57758981 None:intergenic
TGGATTGAATTCTCTCGGCC+TGG 0.469701 1_3:-57751879 None:intergenic
AAACCATAGAATTTACATAA+AGG 0.469948 1_3:-57752328 None:intergenic
ACCGGCATCAATGTGTTCCT+TGG 0.472051 1_3:-57759968 None:intergenic
AAATATTCTTGGAAGTCTGC+TGG 0.473416 1_3:+57756353 Msa0128120:CDS
TTGAGCAACTGCCACTGAAA+AGG 0.473535 1_3:+57760213 Msa0128120:three_prime_UTR
ATTGGCCATGGCTCATCAAT+GGG 0.475159 1_3:-57760112 None:intergenic
GAAGTCTGATGTTTCTGGAT+GGG 0.479401 1_3:+57758955 Msa0128120:CDS
GTACAGTGAGATAATAAAAT+GGG 0.484464 1_3:+57760285 Msa0128120:three_prime_UTR
AGCCTCAAGTTTGTACAAGC+TGG 0.487231 1_3:-57760137 None:intergenic
GAGCCACATCGGCGTGGAGA+AGG 0.489074 1_3:+57758767 Msa0128120:CDS
GATTACCACCATATACATCT+TGG 0.489282 1_3:+57752431 Msa0128120:CDS
TCGACTTCTACATTGACTCT+TGG 0.492456 1_3:-57757002 None:intergenic
TCTGTCGAAACTGTTGGGTT+AGG 0.492462 1_3:+57757068 Msa0128120:CDS
GTTCTTGATGCTTATCGTAA+AGG 0.493028 1_3:+57759424 Msa0128120:CDS
AAGTCTGATGTTTCTGGATG+GGG 0.494803 1_3:+57758956 Msa0128120:CDS
GCTGACGATCAATCAGTTGT+TGG 0.496379 1_3:+57752644 Msa0128120:CDS
GGGCACCAGTTTAGAAATCC+AGG 0.497692 1_3:+57753187 Msa0128120:CDS
TCACCTTTGCATAGCAGTTG+GGG 0.500009 1_3:-57759480 None:intergenic
AGAAAGTAATATTGGTAGGT+TGG 0.500552 1_3:+57753373 Msa0128120:CDS
AATGTTGTTAGCAAGTATGT+TGG 0.504453 1_3:+57753164 Msa0128120:CDS
AGATGTCTGTCGAAACTGTT+GGG 0.506928 1_3:+57757063 Msa0128120:CDS
AGCAGTTGGGGTTTGATGAG+TGG 0.507871 1_3:-57759468 None:intergenic
CCATGGCTCATCAATGGGAT+TGG 0.508976 1_3:-57760107 None:intergenic
GACGACAGAAAAGGTTATCA+AGG 0.510059 1_3:-57753478 None:intergenic
AGAGTTATACTTGAAGGGAG+TGG 0.511021 1_3:+57754622 Msa0128120:CDS
GACCAGCATCCTAAAAGCTC+AGG 0.512493 1_3:+57753395 Msa0128120:CDS
AGCAAGAGCTTACATTTGGA+TGG 0.514477 1_3:+57754494 Msa0128120:CDS
GTCCAGATCAAGCACCTCCA+TGG 0.515220 1_3:+57760019 Msa0128120:CDS
TTCCTTACGGGATATATCAA+AGG 0.515656 1_3:-57753625 None:intergenic
CCAGGCACCGACGACAGAAA+AGG 0.520888 1_3:-57753487 None:intergenic
CCTGCTCATTCAAATCGAAA+AGG 0.520942 1_3:-57759174 None:intergenic
TTTCTTATCCCGAAAAGACC+CGG 0.523094 1_3:-57754207 None:intergenic
GGAAGTCTGATGTTTCTGGA+TGG 0.525818 1_3:+57758954 Msa0128120:CDS
TGTTTCTTTGCTCTACCTTG+TGG 0.528560 1_3:-57760084 None:intergenic
ATGTTTGTAGAATAATGTGC+TGG 0.529641 1_3:-57760399 None:intergenic
GATTGTTCTTGTCTTAATGG+TGG 0.531062 1_3:+57756467 Msa0128120:CDS
CTGATTTATCTTGTTGGACA+AGG 0.531637 1_3:-57751842 None:intergenic
AGCTGAAATAATAGACCTGT+GGG 0.532398 1_3:-57755345 None:intergenic
AAGCATCAAGATTCCACGTA+TGG 0.533307 1_3:+57752405 Msa0128120:CDS
CCATGACAATCAATTCTTGT+CGG 0.533836 1_3:-57754308 None:intergenic
TCGGTCTAGATGGCATGTCT+TGG 0.533864 1_3:-57756295 None:intergenic
TAATGTGCTGGGCATCCAAA+AGG 0.535112 1_3:-57760387 None:intergenic
TCTGCAGTTGCCTCATAGCT+AGG 0.536215 1_3:+57755252 Msa0128120:intron
CCATCCAGTGCAGAAGAACC+TGG 0.536754 1_3:+57754266 Msa0128120:CDS
AAGTATAACTCTTTCTCTAG+AGG 0.540229 1_3:-57754611 None:intergenic
TGAGGAACACGGGTTAAATG+AGG 0.542454 1_3:+57753133 Msa0128120:CDS
TTCTGGTTCGAAGACTTGCA+TGG 0.543056 1_3:+57755283 Msa0128120:CDS
CCAGGTTCTTCTGCACTGGA+TGG 0.543278 1_3:-57754266 None:intergenic
GAGAAAGAGTTATACTTGAA+GGG 0.544561 1_3:+57754617 Msa0128120:CDS
TCACGCCCAGCAGCAAAACA+TGG 0.547646 1_3:-57757031 None:intergenic
AGTGTAGTACTCTGACTGCC+AGG 0.547776 1_3:-57754284 None:intergenic
CCCTCAGGTTTACGAGCCCA+TGG 0.549721 1_3:-57760036 None:intergenic
ATATGCCTTAAATTATGGGT+AGG 0.550596 1_3:+57760262 Msa0128120:three_prime_UTR
TCAGAGAAAGTAATATTGGT+AGG 0.550783 1_3:+57753369 Msa0128120:CDS
TACATTGACTCTTGGCACAA+TGG 0.551079 1_3:-57756994 None:intergenic
TACAAGCTGGACATTGGCCA+TGG 0.552644 1_3:-57760124 None:intergenic
GTTCACCCGTGTACTCTCCT+AGG 0.552754 1_3:-57759090 None:intergenic
ACAACAACAGGGAGCATCCA+TGG 0.554285 1_3:+57751595 Msa0128120:exon
CAGATGTCTGTCGAAACTGT+TGG 0.555785 1_3:+57757062 Msa0128120:CDS
TATGCCTTAAATTATGGGTA+GGG 0.557311 1_3:+57760263 Msa0128120:three_prime_UTR
AGCTGTGGGGATGGTACACT+GGG 0.558478 1_3:+57758743 Msa0128120:intron
ATGACATGTCTTGATTGCCC+TGG 0.559314 1_3:-57752375 None:intergenic
ATCATAGAAGAGCTCCTCAC+CGG 0.561900 1_3:-57759986 None:intergenic
TTCTTATCCCGAAAAGACCC+GGG 0.566631 1_3:-57754206 None:intergenic
GGGTCCAGGAGACAGAAACC+AGG 0.568933 1_3:+57752357 Msa0128120:CDS
GCCAAGGAACACATTGATGC+CGG 0.569010 1_3:+57759967 Msa0128120:CDS
AGTTTGTACAAGCTGGACAT+TGG 0.570669 1_3:-57760130 None:intergenic
TCAGTTGCAAAAGCAAATCC+AGG 0.571291 1_3:+57751861 Msa0128120:CDS
ACGCATCAGGAATCAGAGAA+TGG 0.572672 1_3:+57752622 Msa0128120:intron
CCGACAAGAATTGATTGTCA+TGG 0.573856 1_3:+57754308 Msa0128120:CDS
GAATCGTTGATCAACTCGCT+CGG 0.579502 1_3:+57751558 Msa0128120:five_prime_UTR
TAATGTCAGCAGTATCAACC+AGG 0.580659 1_3:+57752245 Msa0128120:CDS
AAAGTAAGTTCCTAGCTATG+AGG 0.582475 1_3:-57755262 None:intergenic
AGAGCCGCCAAATGATGATG+TGG 0.582841 1_3:+57751816 Msa0128120:CDS
AGCTGCAAGAACCGGTTCAG+AGG 0.582865 1_3:+57756968 Msa0128120:CDS
GTTGCTGGAGATCATCGAGT+TGG 0.583554 1_3:+57759937 Msa0128120:CDS
CACATTGATTGACACCCACA+TGG 0.585645 1_3:-57756437 None:intergenic
TAAAGGACGGTCCATTCTTG+AGG 0.587453 1_3:-57752311 None:intergenic
GTCCAGCTTGTACAAACTTG+AGG 0.588363 1_3:+57760135 Msa0128120:three_prime_UTR
ACAATTGTAGAGGAGACAGA+TGG 0.588503 1_3:+57754233 Msa0128120:CDS
TCCAGATCAAGCACCTCCAT+GGG 0.593087 1_3:+57760020 Msa0128120:CDS
TGACCTTCTCCACGCCGATG+TGG 0.594534 1_3:-57758770 None:intergenic
CACAGAGAAGCTGATAAGCG+TGG 0.596923 1_3:+57759121 Msa0128120:CDS
TGAGTCACATTGTGCCGTGT+CGG 0.596974 1_3:-57754393 None:intergenic
TCTTTGTACAGCTGTGGGGA+TGG 0.597302 1_3:+57758734 Msa0128120:intron
AATCAGTTGTTGGAAGAAGA+CGG 0.597314 1_3:+57752654 Msa0128120:CDS
CCAATCCCATTGATGAGCCA+TGG 0.597523 1_3:+57760107 Msa0128120:exon
TAAGAAAACTACAATTGTAG+AGG 0.600144 1_3:+57754223 Msa0128120:CDS
CTAGAAATTAGCCTAGCAGT+TGG 0.603863 1_3:+57760344 Msa0128120:three_prime_UTR
CACGCCCAGCAGCAAAACAT+GGG 0.606423 1_3:-57757030 None:intergenic
ATATCTAGTTATATGCATGA+TGG 0.607787 1_3:+57755308 Msa0128120:CDS
AACCAGGGACTCTTCACAGA+CGG 0.608975 1_3:+57752261 Msa0128120:CDS
GTTCCCACATCATCATTTGG+CGG 0.610279 1_3:-57751820 None:intergenic
AAAATTTGACACAGAGTGCA+CGG 0.611174 1_3:+57755391 Msa0128120:CDS
TTTCAAAAGATTCAACTCCC+GGG 0.612464 1_3:+57754189 Msa0128120:CDS
GGAACACGGGTTAAATGAGG+AGG 0.618859 1_3:+57753136 Msa0128120:CDS
ATATGGAAAAGAATTGCTGA+TGG 0.619252 1_3:+57756386 Msa0128120:CDS
GAGGCATGTCAATTCCCCAC+AGG 0.619873 1_3:+57755330 Msa0128120:CDS
CAGCTGAAATAATAGACCTG+TGG 0.621680 1_3:-57755346 None:intergenic
AGTATGGCATTTGAGGAACA+CGG 0.622172 1_3:+57753122 Msa0128120:intron
ACAGAGAAGCTGATAAGCGT+GGG 0.622981 1_3:+57759122 Msa0128120:CDS
TCCATGGGCTCGTAAACCTG+AGG 0.626427 1_3:+57760035 Msa0128120:CDS
AATATCCAAGATGTATATGG+TGG 0.626743 1_3:-57752436 None:intergenic
GAATTCAAGTGTGTGTAGCA+AGG 0.628561 1_3:-57751480 None:intergenic
AAACCCCAACTGCTATGCAA+AGG 0.629398 1_3:+57759477 Msa0128120:CDS
TACTCAGGATACCAACTGCT+AGG 0.629686 1_3:-57760355 None:intergenic
CCATGGGCTCGTAAACCTGA+GGG 0.632587 1_3:+57760036 Msa0128120:CDS
TCGAGTTGGCATATTCGCCA+AGG 0.633128 1_3:+57759951 Msa0128120:CDS
CATAGAATTTACATAAAGGA+CGG 0.634365 1_3:-57752324 None:intergenic
GAGCCGCCAAATGATGATGT+GGG 0.634443 1_3:+57751817 Msa0128120:CDS
GGGAATCTAATGCATCACTC+AGG 0.636717 1_3:-57753457 None:intergenic
GGTTCAATCATGGACGACAA+AGG 0.638496 1_3:+57755368 Msa0128120:CDS
TTATGATCAACGTGGAAGTG+AGG 0.638890 1_3:+57752682 Msa0128120:CDS
CAATTGTAGAGGAGACAGAT+GGG 0.639184 1_3:+57754234 Msa0128120:CDS
ACAGTTTGGTCTGAGCCTGT+AGG 0.639905 1_3:+57753731 Msa0128120:CDS
GGTGGTAATCTTTCCATACG+TGG 0.640705 1_3:-57752418 None:intergenic
TGATTACCTAGGAGAGTACA+CGG 0.641342 1_3:+57759084 Msa0128120:CDS
GTAACGTAACTGTGGACGCA+CGG 0.642182 1_3:-57751443 None:intergenic
ACGACAGAAAAGGTTATCAA+GGG 0.642705 1_3:-57753477 None:intergenic
TCTAGTTATATGCATGATGG+AGG 0.645067 1_3:+57755311 Msa0128120:CDS
ACAAACTCGTGACATCTCAT+GGG 0.647106 1_3:+57760184 Msa0128120:three_prime_UTR
GTAATAACGTAACGTAACTG+TGG 0.648740 1_3:-57751451 None:intergenic
GTATGGCATTTGAGGAACAC+GGG 0.649134 1_3:+57753123 Msa0128120:intron
TGTTGTTAGCAAGTATGTTG+GGG 0.651009 1_3:+57753166 Msa0128120:CDS
GGAACACATTGATGCCGGTG+AGG 0.653810 1_3:+57759972 Msa0128120:CDS
CTGGGAGAGCCACATCGGCG+TGG 0.657062 1_3:+57758761 Msa0128120:CDS
GCATGCAGTATACTCCATGT+GGG 0.660903 1_3:+57756423 Msa0128120:CDS
GTGTCAATCAATGTGTGGAA+AGG 0.662829 1_3:+57756445 Msa0128120:CDS
GGTCCAGGAGACAGAAACCA+GGG 0.668116 1_3:+57752358 Msa0128120:CDS
GACGAATCAGCAATTCCACA+AGG 0.669739 1_3:+57760069 Msa0128120:CDS
TGCATGCAGTATACTCCATG+TGG 0.671233 1_3:+57756422 Msa0128120:CDS
TGTTTGTAGAATAATGTGCT+GGG 0.671986 1_3:-57760398 None:intergenic
GTTGTTAGCAAGTATGTTGG+GGG 0.673475 1_3:+57753167 Msa0128120:CDS
ATTGATATGCAGTGACAGTG+AGG 0.679098 1_3:+57752706 Msa0128120:CDS
CAGGGACTCTTCACAGACGG+AGG 0.683082 1_3:+57752264 Msa0128120:CDS
ACACTCTTTGTACAGCTGTG+GGG 0.688643 1_3:+57758730 Msa0128120:intron
CGGATCTATTATGATCAACG+TGG 0.691963 1_3:+57752674 Msa0128120:CDS
TGTGGGTGTCAATCAATGTG+TGG 0.694307 1_3:+57756440 Msa0128120:CDS
AGGTAGCACTGATCACCACA+TGG 0.697472 1_3:-57753764 None:intergenic
GTACACTGGGAGAGCCACAT+CGG 0.707893 1_3:+57758756 Msa0128120:CDS
AGTCACAAATCAGTCCGACA+CGG 0.716243 1_3:+57754379 Msa0128120:CDS
GAAGAATTAACAGAACCTGA+CGG 0.721323 1_3:+57752728 Msa0128120:CDS
AATGTCAGCAGTATCAACCA+GGG 0.730778 1_3:+57752246 Msa0128120:CDS
AAGACATGCCATCTAGACCG+AGG 0.737982 1_3:+57756297 Msa0128120:CDS
AGCATACAAGAACAACAACA+GGG 0.742063 1_3:+57751584 Msa0128120:five_prime_UTR
CGGCGTGGAGAAGGTCAATG+CGG 0.745375 1_3:+57758776 Msa0128120:CDS
TCAGGTTTACGAGCCCATGG+AGG 0.763936 1_3:-57760033 None:intergenic
GATTACCTAGGAGAGTACAC+GGG 0.774788 1_3:+57759085 Msa0128120:CDS
GCTGAAATAATAGACCTGTG+GGG 0.791200 1_3:-57755344 None:intergenic
GTAGGTGATAGAAAACCATG+TGG 0.821461 1_3:+57753749 Msa0128120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATTGTTAGAAAATTA+AGG + chr1_3:57756615-57756634 Msa0128120:intron 10.0%
!! TTCCATATTTAATTAAAATT+TGG + chr1_3:57757379-57757398 Msa0128120:intron 10.0%
!!! GATATTTTGTTTTGTAATAT+TGG + chr1_3:57751788-57751807 Msa0128120:intron 15.0%
!!! ATTAAGTTGAAAATAACATA+GGG - chr1_3:57753656-57753675 None:intergenic 15.0%
!!! TGAAGTATTTTTTATATTTG+AGG + chr1_3:57753813-57753832 Msa0128120:intron 15.0%
!!! TTTTTCTGTTATTTTCTTTT+GGG + chr1_3:57755479-57755498 Msa0128120:intron 15.0%
!!! TTTTCGTACATAATAAAATA+TGG - chr1_3:57755546-57755565 None:intergenic 15.0%
!!! ATATTTTATTATGTACGAAA+AGG + chr1_3:57755545-57755564 Msa0128120:intron 15.0%
!!! AATTTTATTTAATGGAAAAC+TGG + chr1_3:57755670-57755689 Msa0128120:intron 15.0%
!! TATTTAGTTGCATAATAAAA+AGG + chr1_3:57756003-57756022 Msa0128120:intron 15.0%
!! ATTTAGTTGCATAATAAAAA+GGG + chr1_3:57756004-57756023 Msa0128120:intron 15.0%
!! TATAGAACATTATTATATCA+TGG + chr1_3:57756178-57756197 Msa0128120:intron 15.0%
!! TAATCTTAAAAGAAAAAGAT+AGG - chr1_3:57757325-57757344 None:intergenic 15.0%
!!! CTCCAAATTTTAATTAAATA+TGG - chr1_3:57757384-57757403 None:intergenic 15.0%
!!! TATAAATATGCTATTTGAAA+GGG - chr1_3:57758321-57758340 None:intergenic 15.0%
!!! TTATAAATATGCTATTTGAA+AGG - chr1_3:57758322-57758341 None:intergenic 15.0%
!!! TATAAGGTTTTGTGAAATTA+TGG - chr1_3:57751724-57751743 None:intergenic 20.0%
!! AACGATCATATATAAAATTG+AGG - chr1_3:57751761-57751780 None:intergenic 20.0%
!!! AATCCTAATTATTTTTCTCT+AGG + chr1_3:57752174-57752193 Msa0128120:intron 20.0%
!! TTTCCTAGAGAAAAATAATT+AGG - chr1_3:57752180-57752199 None:intergenic 20.0%
!! AAACCATAGAATTTACATAA+AGG - chr1_3:57752331-57752350 None:intergenic 20.0%
!! AAAAATATCCAAGATGTATA+TGG - chr1_3:57752442-57752461 None:intergenic 20.0%
!!! ATATACATCTTGGATATTTT+TGG + chr1_3:57752441-57752460 Msa0128120:CDS 20.0%
!!! ATCCATTTTATAAGAGAAAA+TGG + chr1_3:57752520-57752539 Msa0128120:intron 20.0%
!!! TCCATTTTATAAGAGAAAAT+GGG + chr1_3:57752521-57752540 Msa0128120:intron 20.0%
!! ATGGTTTATAAGTTAAAATC+TGG - chr1_3:57753032-57753051 None:intergenic 20.0%
!!! GATTAAGTTGAAAATAACAT+AGG - chr1_3:57753657-57753676 None:intergenic 20.0%
!!! AGTATTTTTTATATTTGAGG+TGG + chr1_3:57753816-57753835 Msa0128120:intron 20.0%
!!! GTATTTTTTATATTTGAGGT+GGG + chr1_3:57753817-57753836 Msa0128120:intron 20.0%
!! GAACCAATATACAATATAAA+TGG + chr1_3:57753932-57753951 Msa0128120:intron 20.0%
!! TATCTTCTGTTTATTAAAGT+TGG + chr1_3:57753964-57753983 Msa0128120:intron 20.0%
!! TTCCTTCTTATATATTTGAT+AGG + chr1_3:57754102-57754121 Msa0128120:intron 20.0%
!! TTCCTATCAAATATATAAGA+AGG - chr1_3:57754107-57754126 None:intergenic 20.0%
!! TAAAAATTCGTTGAATTCAA+TGG + chr1_3:57754547-57754566 Msa0128120:CDS 20.0%
!!! CTTTTTATTTTGCTTTGTAT+TGG + chr1_3:57754956-57754975 Msa0128120:intron 20.0%
!! TTGAATGCATGAATAATTAT+GGG + chr1_3:57755051-57755070 Msa0128120:intron 20.0%
!!! GTTTTTCTGTTATTTTCTTT+TGG + chr1_3:57755478-57755497 Msa0128120:intron 20.0%
!!! TTTTCTGTTATTTTCTTTTG+GGG + chr1_3:57755480-57755499 Msa0128120:intron 20.0%
!!! AGATATATTGTTATTATGCT+TGG + chr1_3:57755638-57755657 Msa0128120:intron 20.0%
!!! GATATATTGTTATTATGCTT+GGG + chr1_3:57755639-57755658 Msa0128120:intron 20.0%
!!! ATGGGAACAATTTTATTTAA+TGG + chr1_3:57755662-57755681 Msa0128120:intron 20.0%
!! TAAAATCAGAGATAAGATTA+CGG - chr1_3:57755966-57755985 None:intergenic 20.0%
!! TGCAACTAAATATAAAATGA+CGG - chr1_3:57755995-57756014 None:intergenic 20.0%
!! GAAAAAGAAAAAAGAAACAT+TGG - chr1_3:57756076-57756095 None:intergenic 20.0%
!!! AGGTTTGAAGTAAAAAAATT+TGG - chr1_3:57757101-57757120 None:intergenic 20.0%
!!! AATATTTTTACCCCAATAAT+TGG + chr1_3:57757202-57757221 Msa0128120:intron 20.0%
!! AAGTATCTTGATATATTCTT+AGG + chr1_3:57758428-57758447 Msa0128120:intron 20.0%
!! TAGTTATGATTTGATACAAA+AGG - chr1_3:57758524-57758543 None:intergenic 20.0%
!!! ATTTTTATGTCAGATTATCT+TGG + chr1_3:57758931-57758950 Msa0128120:intron 20.0%
!!! TTTTTATGTCAGATTATCTT+GGG + chr1_3:57758932-57758951 Msa0128120:intron 20.0%
!!! ATTAATCATAACCTTTAAGA+AGG - chr1_3:57758984-57759003 None:intergenic 20.0%
!! TTCTTAAAGGTTATGATTAA+TGG + chr1_3:57758983-57759002 Msa0128120:intron 20.0%
!!! AATGTTTTCACAAAGTAAAT+GGG - chr1_3:57759546-57759565 None:intergenic 20.0%
!!! AAATGTTTTCACAAAGTAAA+TGG - chr1_3:57759547-57759566 None:intergenic 20.0%
!!! AAAAGGAAATTTTTATACTC+AGG - chr1_3:57760373-57760392 None:intergenic 20.0%
!!! TGAGTATAAAAATTTCCTTT+TGG + chr1_3:57760372-57760391 Msa0128120:three_prime_UTR 20.0%
!!! GATATATCTATTTCTCTATT+AGG - chr1_3:57760464-57760483 None:intergenic 20.0%
!!! TTTTGTTTTGTAATATTGGC+AGG + chr1_3:57751792-57751811 Msa0128120:intron 25.0%
! AAATGACAAACTTACCTTAA+TGG - chr1_3:57751902-57751921 None:intergenic 25.0%
! TCATAACATAAAGTTCAACA+CGG - chr1_3:57752070-57752089 None:intergenic 25.0%
! TAGTGTCAATTGAAAATTCA+AGG + chr1_3:57752106-57752125 Msa0128120:intron 25.0%
! CATAGAATTTACATAAAGGA+CGG - chr1_3:57752327-57752346 None:intergenic 25.0%
! TATAAAATGGATAAAGCAGT+GGG - chr1_3:57752512-57752531 None:intergenic 25.0%
! TTATAAAATGGATAAAGCAG+TGG - chr1_3:57752513-57752532 None:intergenic 25.0%
!! TCCCATTTTCTCTTATAAAA+TGG - chr1_3:57752525-57752544 None:intergenic 25.0%
! TACTAACTTACCACAAAATA+CGG - chr1_3:57752784-57752803 None:intergenic 25.0%
!!! ATACAAGTCTTATTTCTCAA+AGG - chr1_3:57752980-57752999 None:intergenic 25.0%
!!! TGACTATTGAATTTCTAGTA+TGG + chr1_3:57753106-57753125 Msa0128120:intron 25.0%
! AAAAACAATATATTGCACCA+TGG + chr1_3:57753269-57753288 Msa0128120:intron 25.0%
! ATTTCTCGAAGAAATGAAAA+TGG - chr1_3:57753313-57753332 None:intergenic 25.0%
! ATTGCTTTCATAAAAAACAC+AGG + chr1_3:57753331-57753350 Msa0128120:intron 25.0%
! AGTATCAGAGAAAGTAATAT+TGG + chr1_3:57753365-57753384 Msa0128120:CDS 25.0%
!!! AATTTTTGGGAGATGAAAAT+GGG + chr1_3:57753844-57753863 Msa0128120:intron 25.0%
!! TTTAATGTTTTCATTGACGT+TGG + chr1_3:57753910-57753929 Msa0128120:intron 25.0%
! CCACCATTTATATTGTATAT+TGG - chr1_3:57753938-57753957 None:intergenic 25.0%
! CCAATATACAATATAAATGG+TGG + chr1_3:57753935-57753954 Msa0128120:intron 25.0%
!!! TTTCATTTTCAAGCAGTTAA+AGG + chr1_3:57754154-57754173 Msa0128120:intron 25.0%
! TAAGAAAACTACAATTGTAG+AGG + chr1_3:57754223-57754242 Msa0128120:CDS 25.0%
!! TTCCCATTTTGTAAATCATA+AGG + chr1_3:57754901-57754920 Msa0128120:intron 25.0%
! TGCCTTATGATTTACAAAAT+GGG - chr1_3:57754906-57754925 None:intergenic 25.0%
! TAGGATTTATGGAGAAATAA+AGG - chr1_3:57754989-57755008 None:intergenic 25.0%
! TGAAATTGAAGCTAAAAAAG+AGG - chr1_3:57755021-57755040 None:intergenic 25.0%
! CTTGAATGCATGAATAATTA+TGG + chr1_3:57755050-57755069 Msa0128120:intron 25.0%
! TGAATGCATGAATAATTATG+GGG + chr1_3:57755052-57755071 Msa0128120:intron 25.0%
! TGAATAATTATGGGGAAAAA+AGG + chr1_3:57755060-57755079 Msa0128120:intron 25.0%
! ATATCTAGTTATATGCATGA+TGG + chr1_3:57755308-57755327 Msa0128120:CDS 25.0%
!!! TTTCTGTTATTTTCTTTTGG+GGG + chr1_3:57755481-57755500 Msa0128120:intron 25.0%
! AAGATGAATCTGATGTAAAA+GGG - chr1_3:57755808-57755827 None:intergenic 25.0%
! AAAGATGAATCTGATGTAAA+AGG - chr1_3:57755809-57755828 None:intergenic 25.0%
! AAAATCAGAGATAAGATTAC+GGG - chr1_3:57755965-57755984 None:intergenic 25.0%
!!! ATAATAAAAAGGGTGTTGTT+TGG + chr1_3:57756014-57756033 Msa0128120:intron 25.0%
!!! TAATAAAAAGGGTGTTGTTT+GGG + chr1_3:57756015-57756034 Msa0128120:intron 25.0%
! CAAGGAAGTTTAAATATTCT+TGG + chr1_3:57756342-57756361 Msa0128120:CDS 25.0%
!! CAATTCTTTTCCATATTGTT+GGG - chr1_3:57756382-57756401 None:intergenic 25.0%
! GCATATTTCTTAATTCTCAA+TGG + chr1_3:57756573-57756592 Msa0128120:intron 25.0%
! TAATAGTTCACAAATCAAGT+TGG - chr1_3:57756693-57756712 None:intergenic 25.0%
! GTTCAAAATCTTATCTAAAC+AGG - chr1_3:57756750-57756769 None:intergenic 25.0%
!!! GAAAAGAAGTATTGAATCAA+TGG - chr1_3:57756819-57756838 None:intergenic 25.0%
! ACACTTACATTACTTAAGTT+AGG - chr1_3:57756895-57756914 None:intergenic 25.0%
! GAATAATGAATTCCTAAATC+AGG - chr1_3:57757176-57757195 None:intergenic 25.0%
! AAAGAAAAAGATAGGCTAAT+GGG - chr1_3:57757317-57757336 None:intergenic 25.0%
! AAAAGAAAAAGATAGGCTAA+TGG - chr1_3:57757318-57757337 None:intergenic 25.0%
! TATTCATAATTAAACCCACT+TGG + chr1_3:57757489-57757508 Msa0128120:intron 25.0%
! ATTCATAATTAAACCCACTT+GGG + chr1_3:57757490-57757509 Msa0128120:intron 25.0%
! GATAACATATTGAAGTTACA+GGG - chr1_3:57757685-57757704 None:intergenic 25.0%
! TGATAACATATTGAAGTTAC+AGG - chr1_3:57757686-57757705 None:intergenic 25.0%
! TACAAAAATAGTTACAAGAC+AGG - chr1_3:57757738-57757757 None:intergenic 25.0%
! TAATGTAGGAAAGAGAAAAA+TGG - chr1_3:57757836-57757855 None:intergenic 25.0%
! AAAGATGATAGACATAATGT+AGG - chr1_3:57757850-57757869 None:intergenic 25.0%
!! CATTATGTCTATCATCTTTT+TGG + chr1_3:57757851-57757870 Msa0128120:intron 25.0%
!!! GACTGTTTTGATCTTAATTT+CGG + chr1_3:57758048-57758067 Msa0128120:intron 25.0%
! AACCATATCTAAAAGAAAAC+TGG - chr1_3:57758109-57758128 None:intergenic 25.0%
!! TTTTAGATATGGTTTGACAT+TGG + chr1_3:57758115-57758134 Msa0128120:intron 25.0%
! ATATTAAAAGTAGCTAGAGT+CGG - chr1_3:57758273-57758292 None:intergenic 25.0%
! AGATTATTGTTTCATGGTTA+AGG - chr1_3:57758599-57758618 None:intergenic 25.0%
!! TCTAACTTTTACGATTTACT+TGG + chr1_3:57758656-57758675 Msa0128120:intron 25.0%
!! TTTTATGTCAGATTATCTTG+GGG + chr1_3:57758933-57758952 Msa0128120:intron 25.0%
!!! AGGTAATCATTTTTGTTAAC+AGG - chr1_3:57759073-57759092 None:intergenic 25.0%
! GTTAACAAAAATGATTACCT+AGG + chr1_3:57759073-57759092 Msa0128120:CDS 25.0%
! CACACTCATATAAAATACAA+GGG - chr1_3:57759265-57759284 None:intergenic 25.0%
! TCACACTCATATAAAATACA+AGG - chr1_3:57759266-57759285 None:intergenic 25.0%
!! GTTTGAAATCCAAATGTTAT+AGG - chr1_3:57759358-57759377 None:intergenic 25.0%
!! ATGTTTTCACAAAGTAAATG+GGG - chr1_3:57759545-57759564 None:intergenic 25.0%
!! GGTAAACTAACACATATTTT+AGG - chr1_3:57759583-57759602 None:intergenic 25.0%
!! ATTTTGCATTTCCATAAACA+AGG - chr1_3:57759723-57759742 None:intergenic 25.0%
!! GCAAAATAATTTTTCGCTTT+AGG + chr1_3:57759736-57759755 Msa0128120:intron 25.0%
!! TAGCTTTACTTGTTAACAAT+GGG - chr1_3:57759772-57759791 None:intergenic 25.0%
!!! TTAGCTTTACTTGTTAACAA+TGG - chr1_3:57759773-57759792 None:intergenic 25.0%
!!! AATGTTTTTGCAAAGTAAAC+AGG + chr1_3:57759826-57759845 Msa0128120:intron 25.0%
! TGCTAATATGCCTTAAATTA+TGG + chr1_3:57760257-57760276 Msa0128120:three_prime_UTR 25.0%
! GCTAATATGCCTTAAATTAT+GGG + chr1_3:57760258-57760277 Msa0128120:three_prime_UTR 25.0%
! GTACAGTGAGATAATAAAAT+GGG + chr1_3:57760285-57760304 Msa0128120:three_prime_UTR 25.0%
! TACAAACATGTTTGCTTATT+TGG + chr1_3:57760413-57760432 Msa0128120:three_prime_UTR 25.0%
TAGAGTTGAATAGAGTGAAT+CGG - chr1_3:57751624-57751643 None:intergenic 30.0%
ATGAAAGACTGTTTATGACA+GGG - chr1_3:57751669-57751688 None:intergenic 30.0%
AATGAAAGACTGTTTATGAC+AGG - chr1_3:57751670-57751689 None:intergenic 30.0%
GGTTAATTGAGTAGAGTATA+AGG - chr1_3:57751740-57751759 None:intergenic 30.0%
! TTGCAACTGATTTATCTTGT+TGG - chr1_3:57751851-57751870 None:intergenic 30.0%
!! CTTAATGGATTGAATTCTCT+CGG - chr1_3:57751887-57751906 None:intergenic 30.0%
!! AATTTCTGTAGTTTGTTTGC+TGG + chr1_3:57751931-57751950 Msa0128120:intron 30.0%
!!! GGATGTTCTTTGTTTTTTCA+TGG + chr1_3:57751956-57751975 Msa0128120:intron 30.0%
!!! TGTTTTTTCATGGCTAATTC+TGG + chr1_3:57751966-57751985 Msa0128120:intron 30.0%
! ATCTGTTTGGTTGGTTATAT+GGG + chr1_3:57752015-57752034 Msa0128120:intron 30.0%
TTCAATTCTTTCCTCAAGAA+TGG + chr1_3:57752300-57752319 Msa0128120:CDS 30.0%
CGTCCTTTATGTAAATTCTA+TGG + chr1_3:57752325-57752344 Msa0128120:CDS 30.0%
!! TAAATTCTATGGTTTTACCC+AGG + chr1_3:57752336-57752355 Msa0128120:CDS 30.0%
!! AAATTCTATGGTTTTACCCA+GGG + chr1_3:57752337-57752356 Msa0128120:CDS 30.0%
AATATCCAAGATGTATATGG+TGG - chr1_3:57752439-57752458 None:intergenic 30.0%
TAATTGAAACACAGATCGAT+TGG - chr1_3:57752857-57752876 None:intergenic 30.0%
GATCTGTGTTTCAATTATTG+TGG + chr1_3:57752860-57752879 Msa0128120:intron 30.0%
TATTAAAAGTTGTGTGGTCA+TGG - chr1_3:57753009-57753028 None:intergenic 30.0%
ATCTGGTATTAAAAGTTGTG+TGG - chr1_3:57753015-57753034 None:intergenic 30.0%
!! AATTTCTAGTATGGCATTTG+AGG + chr1_3:57753115-57753134 Msa0128120:intron 30.0%
AATGTTGTTAGCAAGTATGT+TGG + chr1_3:57753164-57753183 Msa0128120:CDS 30.0%
ATGTTGTTAGCAAGTATGTT+GGG + chr1_3:57753165-57753184 Msa0128120:CDS 30.0%
TTCTGATAAAGAAATCTCCA+TGG - chr1_3:57753289-57753308 None:intergenic 30.0%
TTTCATAAAAAACACAGGAG+AGG + chr1_3:57753336-57753355 Msa0128120:intron 30.0%
TCAGAGAAAGTAATATTGGT+AGG + chr1_3:57753369-57753388 Msa0128120:CDS 30.0%
AGAAAGTAATATTGGTAGGT+TGG + chr1_3:57753373-57753392 Msa0128120:CDS 30.0%
! ATGATGATTTTGTACATACC+AGG - chr1_3:57753508-57753527 None:intergenic 30.0%
AAACAAAGAAGAATACCTGA+AGG - chr1_3:57753787-57753806 None:intergenic 30.0%
!! GAATTTTTGGGAGATGAAAA+TGG + chr1_3:57753843-57753862 Msa0128120:intron 30.0%
GAAAAAGTGAACTTGTAACT+GGG - chr1_3:57754077-57754096 None:intergenic 30.0%
TGAAAAAGTGAACTTGTAAC+TGG - chr1_3:57754078-57754097 None:intergenic 30.0%
! TTTTCAAAAGATTCAACTCC+CGG + chr1_3:57754188-57754207 Msa0128120:CDS 30.0%
ACTCAGAAAACTTGAGTAAA+CGG + chr1_3:57754354-57754373 Msa0128120:CDS 30.0%
TAATAGCAAGAGCTTACATT+TGG + chr1_3:57754490-57754509 Msa0128120:CDS 30.0%
AAGTATAACTCTTTCTCTAG+AGG - chr1_3:57754614-57754633 None:intergenic 30.0%
AGAGAAAGAGTTATACTTGA+AGG + chr1_3:57754616-57754635 Msa0128120:CDS 30.0%
GAGAAAGAGTTATACTTGAA+GGG + chr1_3:57754617-57754636 Msa0128120:CDS 30.0%
GATTATGTTGAGAAATGCTA+GGG + chr1_3:57754693-57754712 Msa0128120:intron 30.0%
!! AATTTAGTTTGAACTGTGTG+TGG + chr1_3:57754724-57754743 Msa0128120:intron 30.0%
GATTATGTTGAGAAATGCTA+GGG + chr1_3:57754693-57754712 Msa0128120:intron 30.0%
!! AATTTAGTTTGAACTGTGTG+TGG + chr1_3:57754724-57754743 Msa0128120:intron 30.0%
CTGCCTTATGATTTACAAAA+TGG - chr1_3:57754907-57754926 None:intergenic 30.0%
AAAAAAGAGGATGGAATTGT+AGG - chr1_3:57755008-57755027 None:intergenic 30.0%
ATTGAAGCTAAAAAAGAGGA+TGG - chr1_3:57755017-57755036 None:intergenic 30.0%
ACTCTTTGTAGTAAACTATC+TGG + chr1_3:57755103-57755122 Msa0128120:intron 30.0%
AAATATTGTACTCCATGTAG+AGG + chr1_3:57755184-57755203 Msa0128120:intron 30.0%
!! TTATTTTCTTTTGGGGGTTT+GGG + chr1_3:57755487-57755506 Msa0128120:intron 30.0%
! TATTGTTATTATGCTTGGGA+TGG + chr1_3:57755643-57755662 Msa0128120:intron 30.0%
! ATTGTTATTATGCTTGGGAT+GGG + chr1_3:57755644-57755663 Msa0128120:intron 30.0%
! TTTTTCTTTTTCCTTACCTC+TGG + chr1_3:57756084-57756103 Msa0128120:intron 30.0%
AAGAACTCATTGTACAAAAC+AGG - chr1_3:57756143-57756162 None:intergenic 30.0%
ATAAGTTACTAGAAGTTGAG+AGG - chr1_3:57756213-57756232 None:intergenic 30.0%
!! TCGTTTTGAATGTGAATGTT+TGG + chr1_3:57756265-57756284 Msa0128120:intron 30.0%
! GCAATTCTTTTCCATATTGT+TGG - chr1_3:57756383-57756402 None:intergenic 30.0%
ATATGGAAAAGAATTGCTGA+TGG + chr1_3:57756386-57756405 Msa0128120:CDS 30.0%
AAGGATTGTTCTTGTCTTAA+TGG + chr1_3:57756464-57756483 Msa0128120:CDS 30.0%
ACATGCTGTGAAAAATATTG+TGG + chr1_3:57756491-57756510 Msa0128120:CDS 30.0%
CATGCTGTGAAAAATATTGT+GGG + chr1_3:57756492-57756511 Msa0128120:CDS 30.0%
! CTTTTGTAGCAATGTAATGA+AGG + chr1_3:57756542-57756561 Msa0128120:intron 30.0%
GTGAACTATTATCTTGACTT+AGG + chr1_3:57756702-57756721 Msa0128120:intron 30.0%
GACTTAGGTTTCTATAAAAC+AGG + chr1_3:57756717-57756736 Msa0128120:intron 30.0%
TAATAGTTCACAAATCACGT+TGG - chr1_3:57756871-57756890 None:intergenic 30.0%
TCTATTACATCACCTGATTT+AGG + chr1_3:57757161-57757180 Msa0128120:intron 30.0%
!!! TACAGGGTTTTAGATAAAGA+GGG - chr1_3:57757669-57757688 None:intergenic 30.0%
!!! TTACAGGGTTTTAGATAAAG+AGG - chr1_3:57757670-57757689 None:intergenic 30.0%
GAATAGAGTTTCATACTTTG+TGG - chr1_3:57757768-57757787 None:intergenic 30.0%
TATGAAACTCTATTCAGAGT+AGG + chr1_3:57757773-57757792 Msa0128120:intron 30.0%
AAATGGTTGGAATTTGAGTA+TGG - chr1_3:57757819-57757838 None:intergenic 30.0%
AACATGTCGAAATGATGATA+TGG - chr1_3:57757902-57757921 None:intergenic 30.0%
! TCTTAATTTCGGTTTTGCAT+AGG + chr1_3:57758059-57758078 Msa0128120:intron 30.0%
! CACCAGTTTTCTTTTAGATA+TGG + chr1_3:57758104-57758123 Msa0128120:intron 30.0%
!!! GTTTGACATTGGTTTTATTC+TGG + chr1_3:57758126-57758145 Msa0128120:intron 30.0%
AATCAAGACAAATTGCAGTT+GGG - chr1_3:57758233-57758252 None:intergenic 30.0%
GTTTATTTCCCTAATCGATT+AGG + chr1_3:57758455-57758474 Msa0128120:intron 30.0%
CTACATATCCTAATCGATTA+GGG - chr1_3:57758466-57758485 None:intergenic 30.0%
ACTACATATCCTAATCGATT+AGG - chr1_3:57758467-57758486 None:intergenic 30.0%
TATTGTTTCATGGTTAAGGA+AGG - chr1_3:57758595-57758614 None:intergenic 30.0%
AAGTGGAGATTATTGTTTCA+TGG - chr1_3:57758605-57758624 None:intergenic 30.0%
TCGTAAAAGTTAGACAAAAG+TGG - chr1_3:57758650-57758669 None:intergenic 30.0%
TTTACGATTTACTTGGACTT+TGG + chr1_3:57758663-57758682 Msa0128120:intron 30.0%
CAATGATTTAAGAAGGATAG+TGG - chr1_3:57758692-57758711 None:intergenic 30.0%
GCAATTGCAATGATTTAAGA+AGG - chr1_3:57758699-57758718 None:intergenic 30.0%
! ACAAAGAGTGTGATGTTTAT+AGG - chr1_3:57758721-57758740 None:intergenic 30.0%
! GCAATATGAGACTTCTTTTA+AGG + chr1_3:57758798-57758817 Msa0128120:CDS 30.0%
! GTACTCATCACTTTGATTTA+CGG - chr1_3:57758879-57758898 None:intergenic 30.0%
TATAGATTGACAAAACCCAA+CGG - chr1_3:57759312-57759331 None:intergenic 30.0%
AATCCAGAAAATCAGATTGT+TGG + chr1_3:57759502-57759521 Msa0128120:intron 30.0%
ATCCAGAAAATCAGATTGTT+GGG + chr1_3:57759503-57759522 Msa0128120:intron 30.0%
! GTTAGTTTACCTTGTTAACA+AGG + chr1_3:57759592-57759611 Msa0128120:intron 30.0%
! CTATTTTCTCCTTGTTAACA+AGG - chr1_3:57759604-57759623 None:intergenic 30.0%
! AGCTAAAGATGAAGCATTTA+AGG + chr1_3:57759667-57759686 Msa0128120:intron 30.0%
!! TTTGACGTTTTCCTTGTTTA+TGG + chr1_3:57759709-57759728 Msa0128120:intron 30.0%
CTCTTCTATGATTATTGCTA+TGG + chr1_3:57759997-57760016 Msa0128120:CDS 30.0%
! AATTTCAGTTTCCTTTTCAG+TGG - chr1_3:57760227-57760246 None:intergenic 30.0%
ATATGCCTTAAATTATGGGT+AGG + chr1_3:57760262-57760281 Msa0128120:three_prime_UTR 30.0%
TATGCCTTAAATTATGGGTA+GGG + chr1_3:57760263-57760282 Msa0128120:three_prime_UTR 30.0%
GGTACAGTGAGATAATAAAA+TGG + chr1_3:57760284-57760303 Msa0128120:three_prime_UTR 30.0%
TGTTTGTAGAATAATGTGCT+GGG - chr1_3:57760401-57760420 None:intergenic 30.0%
ATGTTTGTAGAATAATGTGC+TGG - chr1_3:57760402-57760421 None:intergenic 30.0%
!!! ACGGTTTTAGAAATTGGGTT+GGG - chr1_3:57751427-57751446 None:intergenic 35.0%
GTAATAACGTAACGTAACTG+TGG - chr1_3:57751454-57751473 None:intergenic 35.0%
AGCATACAAGAACAACAACA+GGG + chr1_3:57751584-57751603 Msa0128120:five_prime_UTR 35.0%
CTGATTTATCTTGTTGGACA+AGG - chr1_3:57751845-57751864 None:intergenic 35.0%
CGAGAGAATTCAATCCATTA+AGG + chr1_3:57751885-57751904 Msa0128120:CDS 35.0%
CATAGTTGTTCTGATCTGTT+TGG + chr1_3:57752002-57752021 Msa0128120:intron 35.0%
! GATCTGTTTGGTTGGTTATA+TGG + chr1_3:57752014-57752033 Msa0128120:intron 35.0%
! TTCTCTAGGAAAAACTTCAG+AGG + chr1_3:57752188-57752207 Msa0128120:intron 35.0%
GATTACCACCATATACATCT+TGG + chr1_3:57752431-57752450 Msa0128120:CDS 35.0%
!!! CATCTTGGATATTTTTGGAC+AGG + chr1_3:57752446-57752465 Msa0128120:CDS 35.0%
TAAAATCTTTCACACGCATC+AGG + chr1_3:57752609-57752628 Msa0128120:intron 35.0%
AATCAGTTGTTGGAAGAAGA+CGG + chr1_3:57752654-57752673 Msa0128120:CDS 35.0%
GAAGAATTAACAGAACCTGA+CGG + chr1_3:57752728-57752747 Msa0128120:CDS 35.0%
! AATTCATGTTTTTCACCGTC+AGG - chr1_3:57752746-57752765 None:intergenic 35.0%
TTGAATGAAGTTGGGATTCA+TGG - chr1_3:57753051-57753070 None:intergenic 35.0%
CTGAACGTTTGAATGAAGTT+GGG - chr1_3:57753059-57753078 None:intergenic 35.0%
TGTTGTTAGCAAGTATGTTG+GGG + chr1_3:57753166-57753185 Msa0128120:CDS 35.0%
GATTACCTGGATTTCTAAAC+TGG - chr1_3:57753195-57753214 None:intergenic 35.0%
ACAAGTTATTCTGGATTACC+TGG - chr1_3:57753208-57753227 None:intergenic 35.0%
AGGTAATCCAGAATAACTTG+TGG + chr1_3:57753207-57753226 Msa0128120:intron 35.0%
! GGTAATCCAGAATAACTTGT+GGG + chr1_3:57753208-57753227 Msa0128120:intron 35.0%
TTCTCTAGATACATGCTCAT+AGG - chr1_3:57753434-57753453 None:intergenic 35.0%
ACGACAGAAAAGGTTATCAA+GGG - chr1_3:57753480-57753499 None:intergenic 35.0%
!! TTGATAACCTTTTCTGTCGT+CGG + chr1_3:57753480-57753499 Msa0128120:CDS 35.0%
AACCTTTGATATATCCCGTA+AGG + chr1_3:57753623-57753642 Msa0128120:intron 35.0%
TTCCTTACGGGATATATCAA+AGG - chr1_3:57753628-57753647 None:intergenic 35.0%
AGAGTGAAAAGAAGACAGTT+TGG + chr1_3:57753717-57753736 Msa0128120:intron 35.0%
TTTCAAAAGATTCAACTCCC+GGG + chr1_3:57754189-57754208 Msa0128120:CDS 35.0%
CCATGACAATCAATTCTTGT+CGG - chr1_3:57754311-57754330 None:intergenic 35.0%
! TACTCAAGTTTTCTGAGTCA+GGG - chr1_3:57754352-57754371 None:intergenic 35.0%
! TTACTCAAGTTTTCTGAGTC+AGG - chr1_3:57754353-57754372 None:intergenic 35.0%
TTACAAGAATCCTGAGAATC+AGG - chr1_3:57754428-57754447 None:intergenic 35.0%
GAATTCTTGGTTTCTCAGAT+TGG + chr1_3:57754585-57754604 Msa0128120:CDS 35.0%
TTTCTCAACATAATCCTGTG+AGG - chr1_3:57754688-57754707 None:intergenic 35.0%
GGATTATGTTGAGAAATGCT+AGG + chr1_3:57754692-57754711 Msa0128120:intron 35.0%
GTGAACACAGAAAGATACAT+GGG - chr1_3:57754786-57754805 None:intergenic 35.0%
TTTCTCAACATAATCCTGTG+AGG - chr1_3:57754688-57754707 None:intergenic 35.0%
GGATTATGTTGAGAAATGCT+AGG + chr1_3:57754692-57754711 Msa0128120:intron 35.0%
GGATGGAATTGTAGGATTTA+TGG - chr1_3:57755000-57755019 None:intergenic 35.0%
TTCATTCGCTTATGAACCAT+TGG - chr1_3:57755136-57755155 None:intergenic 35.0%
AGCAAATTAAGACCTCTACA+TGG - chr1_3:57755199-57755218 None:intergenic 35.0%
AAAGTAAGTTCCTAGCTATG+AGG - chr1_3:57755265-57755284 None:intergenic 35.0%
ATAGCTAGGAACTTACTTTC+TGG + chr1_3:57755266-57755285 Msa0128120:CDS 35.0%
TCTAGTTATATGCATGATGG+AGG + chr1_3:57755311-57755330 Msa0128120:CDS 35.0%
AGCTGAAATAATAGACCTGT+GGG - chr1_3:57755348-57755367 None:intergenic 35.0%
! TATTTCAGCTGGTTCAATCA+TGG + chr1_3:57755358-57755377 Msa0128120:CDS 35.0%
AAAATTTGACACAGAGTGCA+CGG + chr1_3:57755391-57755410 Msa0128120:CDS 35.0%
!! GTTATTTTCTTTTGGGGGTT+TGG + chr1_3:57755486-57755505 Msa0128120:intron 35.0%
!! TATTTTCTTTTGGGGGTTTG+GGG + chr1_3:57755488-57755507 Msa0128120:intron 35.0%
GAAATTGTATGTCAATCGTC+TGG + chr1_3:57755594-57755613 Msa0128120:intron 35.0%
TGAATCTGATGTAAAAGGGA+TGG - chr1_3:57755804-57755823 None:intergenic 35.0%
AAGTGCAGAAACTAAAGTGT+GGG - chr1_3:57755861-57755880 None:intergenic 35.0%
AAAGTGCAGAAACTAAAGTG+TGG - chr1_3:57755862-57755881 None:intergenic 35.0%
TGTACAAAACAGGAGGATTA+GGG - chr1_3:57756133-57756152 None:intergenic 35.0%
TTGTACAAAACAGGAGGATT+AGG - chr1_3:57756134-57756153 None:intergenic 35.0%
AACTCATTGTACAAAACAGG+AGG - chr1_3:57756140-57756159 None:intergenic 35.0%
TTTGTGGCAAGTAAAGAGTA+GGG - chr1_3:57756243-57756262 None:intergenic 35.0%
! TTTTGTGGCAAGTAAAGAGT+AGG - chr1_3:57756244-57756263 None:intergenic 35.0%
! CACATTCAAAACGACTTTTG+TGG - chr1_3:57756259-57756278 None:intergenic 35.0%
TGAGAAAAAGAGGCAAAACA+AGG + chr1_3:57756324-57756343 Msa0128120:CDS 35.0%
AAATATTCTTGGAAGTCTGC+TGG + chr1_3:57756353-57756372 Msa0128120:CDS 35.0%
GATTGTTCTTGTCTTAATGG+TGG + chr1_3:57756467-57756486 Msa0128120:CDS 35.0%
TTATTCAAACGACCAACACA+CGG - chr1_3:57756599-57756618 None:intergenic 35.0%
ATGTAATTCAAAACCCGAAG+AGG - chr1_3:57757133-57757152 None:intergenic 35.0%
TAGATGCTCTCCAATTATTG+GGG - chr1_3:57757215-57757234 None:intergenic 35.0%
GTAGATGCTCTCCAATTATT+GGG - chr1_3:57757216-57757235 None:intergenic 35.0%
AGTAGATGCTCTCCAATTAT+TGG - chr1_3:57757217-57757236 None:intergenic 35.0%
GATAAGAAAAACCACAGGTT+TGG - chr1_3:57757260-57757279 None:intergenic 35.0%
AGCAAGATAAGAAAAACCAC+AGG - chr1_3:57757265-57757284 None:intergenic 35.0%
ATAATTAAACCCACTTGGGT+TGG + chr1_3:57757494-57757513 Msa0128120:intron 35.0%
AATAGTTACAAGACAGGTCA+GGG - chr1_3:57757732-57757751 None:intergenic 35.0%
AAATAGTTACAAGACAGGTC+AGG - chr1_3:57757733-57757752 None:intergenic 35.0%
GTAGGAAAGAGAAAAATGGT+TGG - chr1_3:57757832-57757851 None:intergenic 35.0%
ATGTCGAAATGATGATATGG+AGG - chr1_3:57757899-57757918 None:intergenic 35.0%
AACAAACCAGAAAGACTACA+AGG - chr1_3:57757980-57757999 None:intergenic 35.0%
CAAAAAAGATCACACAACTG+TGG - chr1_3:57758011-57758030 None:intergenic 35.0%
!!! CACAGTTGTGTGATCTTTTT+TGG + chr1_3:57758009-57758028 Msa0128120:intron 35.0%
!!! TTGTGTGATCTTTTTTGGCT+TGG + chr1_3:57758014-57758033 Msa0128120:intron 35.0%
!! GTTTTGCATAGGTTTTGTCT+CGG + chr1_3:57758070-57758089 Msa0128120:intron 35.0%
! TTTTTCCTCCAATTGCAGTA+TGG + chr1_3:57758194-57758213 Msa0128120:intron 35.0%
GAATCAAGACAAATTGCAGT+TGG - chr1_3:57758234-57758253 None:intergenic 35.0%
ACTACAAGATAAAGGTGAAG+TGG - chr1_3:57758622-57758641 None:intergenic 35.0%
! TGGTGTCAACTACAAGATAA+AGG - chr1_3:57758630-57758649 None:intergenic 35.0%
!!! TTCTTTTAAGGCAACAACAG+AGG + chr1_3:57758810-57758829 Msa0128120:CDS 35.0%
!!! TCTTTTAAGGCAACAACAGA+GGG + chr1_3:57758811-57758830 Msa0128120:CDS 35.0%
! ATCACTTTGATTTACGGCAA+TGG - chr1_3:57758873-57758892 None:intergenic 35.0%
AGAGACAAATCACATGCATT+AGG - chr1_3:57758901-57758920 None:intergenic 35.0%
ATACCCTCACATTTCTTTCT+TGG + chr1_3:57759329-57759348 Msa0128120:intron 35.0%
TTGCCAAGAAAGAAATGTGA+GGG - chr1_3:57759335-57759354 None:intergenic 35.0%
TCTTGGCAACCTATAACATT+TGG + chr1_3:57759346-57759365 Msa0128120:intron 35.0%
GATAAGCATCAAGAACATAC+TGG - chr1_3:57759420-57759439 None:intergenic 35.0%
GTTCTTGATGCTTATCGTAA+AGG + chr1_3:57759424-57759443 Msa0128120:CDS 35.0%
! GTAAACAGGTCCTTACATTT+TGG + chr1_3:57759840-57759859 Msa0128120:intron 35.0%
GCTACAAAGTCCAAAATGTA+AGG - chr1_3:57759853-57759872 None:intergenic 35.0%
TGTCTCTGTTGAGAATATAC+TGG - chr1_3:57760167-57760186 None:intergenic 35.0%
TGTACCCTACCCATAATTTA+AGG - chr1_3:57760270-57760289 None:intergenic 35.0%
!! TTTAGAAATTGGGTTGGGTG+TGG - chr1_3:57751422-57751441 None:intergenic 40.0%
!!! CACGGTTTTAGAAATTGGGT+TGG - chr1_3:57751428-57751447 None:intergenic 40.0%
!!! GACGCACGGTTTTAGAAATT+GGG - chr1_3:57751432-57751451 None:intergenic 40.0%
GAATTCAAGTGTGTGTAGCA+AGG - chr1_3:57751483-57751502 None:intergenic 40.0%
AGAGTAGAGTAGAGTAGAGT+CGG - chr1_3:57751514-57751533 None:intergenic 40.0%
CAGCATACAAGAACAACAAC+AGG + chr1_3:57751583-57751602 Msa0128120:five_prime_UTR 40.0%
ATAGAGTGAATCGGAAACCA+TGG - chr1_3:57751615-57751634 None:intergenic 40.0%
TGTTTATGACAGGGATTGGA+AGG - chr1_3:57751660-57751679 None:intergenic 40.0%
AGACTGTTTATGACAGGGAT+TGG - chr1_3:57751664-57751683 None:intergenic 40.0%
AAGGTTCCCACATCATCATT+TGG - chr1_3:57751826-57751845 None:intergenic 40.0%
TCAGTTGCAAAAGCAAATCC+AGG + chr1_3:57751861-57751880 Msa0128120:CDS 40.0%
! TCATGGCTAATTCTGGAAAC+TGG + chr1_3:57751973-57751992 Msa0128120:intron 40.0%
GTTGTTCTGATCTGTTTGGT+TGG + chr1_3:57752006-57752025 Msa0128120:intron 40.0%
!! GGTTATATGGGTGTCACTTT+CGG + chr1_3:57752027-57752046 Msa0128120:intron 40.0%
TAATTGCAAGTGATCCAGCA+TGG - chr1_3:57752155-57752174 None:intergenic 40.0%
TATGACATTGCAGCTTCTTC+TGG - chr1_3:57752216-57752235 None:intergenic 40.0%
AAGCTGCAATGTCATACTTC+AGG + chr1_3:57752220-57752239 Msa0128120:CDS 40.0%
TAATGTCAGCAGTATCAACC+AGG + chr1_3:57752245-57752264 Msa0128120:CDS 40.0%
AATGTCAGCAGTATCAACCA+GGG + chr1_3:57752246-57752265 Msa0128120:CDS 40.0%
AAGCATCAAGATTCCACGTA+TGG + chr1_3:57752405-57752424 Msa0128120:CDS 40.0%
CGGATCTATTATGATCAACG+TGG + chr1_3:57752674-57752693 Msa0128120:CDS 40.0%
TTATGATCAACGTGGAAGTG+AGG + chr1_3:57752682-57752701 Msa0128120:CDS 40.0%
ATTGATATGCAGTGACAGTG+AGG + chr1_3:57752706-57752725 Msa0128120:CDS 40.0%
! ATGCTGAAGACCGTATTTTG+TGG + chr1_3:57752771-57752790 Msa0128120:CDS 40.0%
GAGTCATATAGATGCTCTGT+TGG + chr1_3:57752929-57752948 Msa0128120:intron 40.0%
!! AGTCTTATTTCTCAAAGGCG+TGG - chr1_3:57752975-57752994 None:intergenic 40.0%
GCTGAACGTTTGAATGAAGT+TGG - chr1_3:57753060-57753079 None:intergenic 40.0%
AGTATGGCATTTGAGGAACA+CGG + chr1_3:57753122-57753141 Msa0128120:intron 40.0%
GTTGTTAGCAAGTATGTTGG+GGG + chr1_3:57753167-57753186 Msa0128120:CDS 40.0%
GTCATTCCCACAAGTTATTC+TGG - chr1_3:57753217-57753236 None:intergenic 40.0%
! TCATGTTCTCCTGAGCTTTT+AGG - chr1_3:57753407-57753426 None:intergenic 40.0%
GACGACAGAAAAGGTTATCA+AGG - chr1_3:57753481-57753500 None:intergenic 40.0%
TATACCTTTCTGCTTTCCTG+CGG + chr1_3:57753566-57753585 Msa0128120:intron 40.0%
!! ATTTTTGACTGTCGACTGCA+TGG + chr1_3:57753592-57753611 Msa0128120:CDS 40.0%
!! ACATAGGGCATTGTTCCTTA+CGG - chr1_3:57753641-57753660 None:intergenic 40.0%
! CATGGTTTTCTATCACCTAC+AGG - chr1_3:57753749-57753768 None:intergenic 40.0%
GTAGGTGATAGAAAACCATG+TGG + chr1_3:57753749-57753768 Msa0128120:CDS 40.0%
ATAGTATGCACGCAGAAAAG+TGG - chr1_3:57754046-57754065 None:intergenic 40.0%
TTTCTTATCCCGAAAAGACC+CGG - chr1_3:57754210-57754229 None:intergenic 40.0%
ACAATTGTAGAGGAGACAGA+TGG + chr1_3:57754233-57754252 Msa0128120:CDS 40.0%
CAATTGTAGAGGAGACAGAT+GGG + chr1_3:57754234-57754253 Msa0128120:CDS 40.0%
CCGACAAGAATTGATTGTCA+TGG + chr1_3:57754308-57754327 Msa0128120:CDS 40.0%
AGCAAGAGCTTACATTTGGA+TGG + chr1_3:57754494-57754513 Msa0128120:CDS 40.0%
! GTCTCATTTGTGACAGCTTT+TGG - chr1_3:57754521-57754540 None:intergenic 40.0%
! TCAATGGAAGAACGAGTTGA+TGG + chr1_3:57754563-57754582 Msa0128120:CDS 40.0%
!! GAACGAGTTGATGGAATTCT+TGG + chr1_3:57754572-57754591 Msa0128120:CDS 40.0%
AGAGTTATACTTGAAGGGAG+TGG + chr1_3:57754622-57754641 Msa0128120:CDS 40.0%
TTGAAGGGAGTGGAAATGTT+TGG + chr1_3:57754632-57754651 Msa0128120:CDS 40.0%
TGGAAATGTTTGGCAGAAAC+AGG + chr1_3:57754642-57754661 Msa0128120:CDS 40.0%
TATGTTGAGAAATGCTAGGG+TGG + chr1_3:57754696-57754715 Msa0128120:intron 40.0%
GGTGAACACAGAAAGATACA+TGG - chr1_3:57754787-57754806 None:intergenic 40.0%
TATGTTGAGAAATGCTAGGG+TGG + chr1_3:57754696-57754715 Msa0128120:intron 40.0%
! ACTATCTGGAATGTGACCAA+TGG + chr1_3:57755117-57755136 Msa0128120:intron 40.0%
GCTGAAATAATAGACCTGTG+GGG - chr1_3:57755347-57755366 None:intergenic 40.0%
CAGCTGAAATAATAGACCTG+TGG - chr1_3:57755349-57755368 None:intergenic 40.0%
CACAGGTCTATTATTTCAGC+TGG + chr1_3:57755347-57755366 Msa0128120:CDS 40.0%
GAGAATGCAGGGTAAAAGAT+GGG - chr1_3:57755439-57755458 None:intergenic 40.0%
TGAGAATGCAGGGTAAAAGA+TGG - chr1_3:57755440-57755459 None:intergenic 40.0%
CAACAAGACATGAGAATGCA+GGG - chr1_3:57755450-57755469 None:intergenic 40.0%
ACAACAAGACATGAGAATGC+AGG - chr1_3:57755451-57755470 None:intergenic 40.0%
! ACTCGGTGGTATAACACATA+AGG + chr1_3:57755572-57755591 Msa0128120:intron 40.0%
TGTATGTCAATCGTCTGGTT+AGG + chr1_3:57755599-57755618 Msa0128120:intron 40.0%
AGGGATGGAGTGATTTACAT+GGG - chr1_3:57755789-57755808 None:intergenic 40.0%
AAGGGATGGAGTGATTTACA+TGG - chr1_3:57755790-57755809 None:intergenic 40.0%
GTTTCTGCACTTTCCAATCA+AGG + chr1_3:57755869-57755888 Msa0128120:intron 40.0%
CCTTATGAGTGCATTCTTGA+AGG - chr1_3:57755895-57755914 None:intergenic 40.0%
CCTTCAAGAATGCACTCATA+AGG + chr1_3:57755892-57755911 Msa0128120:intron 40.0%
TGAATGTGAATGTTTGGCCT+AGG + chr1_3:57756271-57756290 Msa0128120:intron 40.0%
GAGTATACTGCATGCAAGAT+TGG - chr1_3:57756418-57756437 None:intergenic 40.0%
GTGTCAATCAATGTGTGGAA+AGG + chr1_3:57756445-57756464 Msa0128120:CDS 40.0%
!! TACATTGACTCTTGGCACAA+TGG - chr1_3:57756997-57757016 None:intergenic 40.0%
!! TCGACTTCTACATTGACTCT+TGG - chr1_3:57757005-57757024 None:intergenic 40.0%
AGATGTCTGTCGAAACTGTT+GGG + chr1_3:57757063-57757082 Msa0128120:CDS 40.0%
AACCTGATGTTATGCCTCTT+CGG + chr1_3:57757116-57757135 Msa0128120:intron 40.0%
GATATATCATGCCAAACCTG+TGG + chr1_3:57757246-57757265 Msa0128120:intron 40.0%
ATTCTCCCCAGTGTCAATTT+CGG + chr1_3:57757573-57757592 Msa0128120:intron 40.0%
!!! GGGTTTTAGATAAAGAGGGA+AGG - chr1_3:57757665-57757684 None:intergenic 40.0%
TCGAAATGATGATATGGAGG+AGG - chr1_3:57757896-57757915 None:intergenic 40.0%
AAACCAGAAAGACTACAAGG+TGG - chr1_3:57757977-57757996 None:intergenic 40.0%
!! GAAGTCTGATGTTTCTGGAT+GGG + chr1_3:57758955-57758974 Msa0128120:CDS 40.0%
!! AAGTCTGATGTTTCTGGATG+GGG + chr1_3:57758956-57758975 Msa0128120:CDS 40.0%
! TGATTACCTAGGAGAGTACA+CGG + chr1_3:57759084-57759103 Msa0128120:CDS 40.0%
CCTGCTCATTCAAATCGAAA+AGG - chr1_3:57759177-57759196 None:intergenic 40.0%
!! CCTTTTCGATTTGAATGAGC+AGG + chr1_3:57759174-57759193 Msa0128120:CDS 40.0%
TGTTTCGCTGTATTTCCGTT+GGG + chr1_3:57759294-57759313 Msa0128120:intron 40.0%
GTTGCCAAGAAAGAAATGTG+AGG - chr1_3:57759336-57759355 None:intergenic 40.0%
TTCACCTTTGCATAGCAGTT+GGG - chr1_3:57759484-57759503 None:intergenic 40.0%
ATTCACCTTTGCATAGCAGT+TGG - chr1_3:57759485-57759504 None:intergenic 40.0%
! CTCCCAACAATCTGATTTTC+TGG - chr1_3:57759508-57759527 None:intergenic 40.0%
CAGAAAATCAGATTGTTGGG+AGG + chr1_3:57759506-57759525 Msa0128120:intron 40.0%
ACTGCTGCTATAGGTAATGT+TGG + chr1_3:57759915-57759934 Msa0128120:intron 40.0%
! CTATAGGTAATGTTGGTTGC+TGG + chr1_3:57759922-57759941 Msa0128120:intron 40.0%
!! AATTGCTGATTCGTCTCTCT+TGG - chr1_3:57760064-57760083 None:intergenic 40.0%
TGTTTCTTTGCTCTACCTTG+TGG - chr1_3:57760087-57760106 None:intergenic 40.0%
AGTTTGTACAAGCTGGACAT+TGG - chr1_3:57760133-57760152 None:intergenic 40.0%
ACAAACTCGTGACATCTCAT+GGG + chr1_3:57760184-57760203 Msa0128120:three_prime_UTR 40.0%
! CTAGAAATTAGCCTAGCAGT+TGG + chr1_3:57760344-57760363 Msa0128120:three_prime_UTR 40.0%
!!! GGACGCACGGTTTTAGAAAT+TGG - chr1_3:57751433-57751452 None:intergenic 45.0%
GAATCGTTGATCAACTCGCT+CGG + chr1_3:57751558-57751577 Msa0128120:five_prime_UTR 45.0%
GTTCCCACATCATCATTTGG+CGG - chr1_3:57751823-57751842 None:intergenic 45.0%
!! TCTGTAGTTTGTTTGCTGGC+AGG + chr1_3:57751935-57751954 Msa0128120:intron 45.0%
! CTTCTTTTTGCACACCATGC+TGG + chr1_3:57752138-57752157 Msa0128120:intron 45.0%
TAAAGGACGGTCCATTCTTG+AGG - chr1_3:57752314-57752333 None:intergenic 45.0%
ATGACATGTCTTGATTGCCC+TGG - chr1_3:57752378-57752397 None:intergenic 45.0%
GGTGGTAATCTTTCCATACG+TGG - chr1_3:57752421-57752440 None:intergenic 45.0%
AGCAGTGGGTAACTCAACAT+AGG - chr1_3:57752498-57752517 None:intergenic 45.0%
ACGCATCAGGAATCAGAGAA+TGG + chr1_3:57752622-57752641 Msa0128120:intron 45.0%
GCTGACGATCAATCAGTTGT+TGG + chr1_3:57752644-57752663 Msa0128120:CDS 45.0%
ATGCTCTGTTGGAGCAAACA+CGG + chr1_3:57752940-57752959 Msa0128120:intron 45.0%
GTATGGCATTTGAGGAACAC+GGG + chr1_3:57753123-57753142 Msa0128120:intron 45.0%
! TGAGGAACACGGGTTAAATG+AGG + chr1_3:57753133-57753152 Msa0128120:CDS 45.0%
GGGAATCTAATGCATCACTC+AGG - chr1_3:57753460-57753479 None:intergenic 45.0%
!! CATAGGGCATTGTTCCTTAC+GGG - chr1_3:57753640-57753659 None:intergenic 45.0%
! TTGAGGTGGGCGAGAATTTT+TGG + chr1_3:57753830-57753849 Msa0128120:intron 45.0%
! TGAGGTGGGCGAGAATTTTT+GGG + chr1_3:57753831-57753850 Msa0128120:intron 45.0%
! ATTCAACTCCCGGGTCTTTT+CGG + chr1_3:57754198-57754217 Msa0128120:CDS 45.0%
TTCTTATCCCGAAAAGACCC+GGG - chr1_3:57754209-57754228 None:intergenic 45.0%
AGTCACAAATCAGTCCGACA+CGG + chr1_3:57754379-57754398 Msa0128120:CDS 45.0%
AAGATCGCTTCCTGATTCTC+AGG + chr1_3:57754415-57754434 Msa0128120:CDS 45.0%
TCTTTCTGTGTTCTCCTCAC+AGG + chr1_3:57754671-57754690 Msa0128120:intron 45.0%
TCTTTCTGTGTTCACCTCAC+AGG + chr1_3:57754791-57754810 Msa0128120:intron 45.0%
!! TTCTGGTTCGAAGACTTGCA+TGG + chr1_3:57755283-57755302 Msa0128120:CDS 45.0%
GGTTCAATCATGGACGACAA+AGG + chr1_3:57755368-57755387 Msa0128120:CDS 45.0%
CAGGGTAAAAGATGGGAACA+GGG - chr1_3:57755432-57755451 None:intergenic 45.0%
ATGTACGAAAAGGCCTCACT+CGG + chr1_3:57755555-57755574 Msa0128120:intron 45.0%
ATGTGTTATACCACCGAGTG+AGG - chr1_3:57755571-57755590 None:intergenic 45.0%
GAGCATAATGCTCCAAGCTA+TGG + chr1_3:57755711-57755730 Msa0128120:intron 45.0%
CATAATGCTCCAAGCTATGG+AGG + chr1_3:57755714-57755733 Msa0128120:intron 45.0%
AAGAGAGATCCTCCATAGCT+TGG - chr1_3:57755726-57755745 None:intergenic 45.0%
GGGATGGAGTGATTTACATG+GGG - chr1_3:57755788-57755807 None:intergenic 45.0%
GCATTCTTGAAGGCCTTGAT+TGG - chr1_3:57755885-57755904 None:intergenic 45.0%
AGAATGCACTCATAAGGCCT+TGG + chr1_3:57755898-57755917 Msa0128120:intron 45.0%
GAATGCACTCATAAGGCCTT+GGG + chr1_3:57755899-57755918 Msa0128120:intron 45.0%
ACTCATAAGGCCTTGGGTTT+GGG + chr1_3:57755905-57755924 Msa0128120:intron 45.0%
!! TTGGCTAATGCAGAGGCATT+TGG + chr1_3:57755930-57755949 Msa0128120:intron 45.0%
!! TGGCTAATGCAGAGGCATTT+GGG + chr1_3:57755931-57755950 Msa0128120:intron 45.0%
! CCTCTTTTTCTCAGCAACCT+CGG - chr1_3:57756317-57756336 None:intergenic 45.0%
TGCATGCAGTATACTCCATG+TGG + chr1_3:57756422-57756441 Msa0128120:CDS 45.0%
GCATGCAGTATACTCCATGT+GGG + chr1_3:57756423-57756442 Msa0128120:CDS 45.0%
! CACATTGATTGACACCCACA+TGG - chr1_3:57756440-57756459 None:intergenic 45.0%
TGTGGGTGTCAATCAATGTG+TGG + chr1_3:57756440-57756459 Msa0128120:CDS 45.0%
AATTCTCAATGGCCGTGTGT+TGG + chr1_3:57756584-57756603 Msa0128120:intron 45.0%
CTCTTCGAACAACTGAAGGT+AGG - chr1_3:57756950-57756969 None:intergenic 45.0%
! AATGCCCATGTTTTGCTGCT+GGG + chr1_3:57757026-57757045 Msa0128120:CDS 45.0%
CAACAGTTTCGACAGACATC+TGG - chr1_3:57757064-57757083 None:intergenic 45.0%
CAGATGTCTGTCGAAACTGT+TGG + chr1_3:57757062-57757081 Msa0128120:CDS 45.0%
TCTGTCGAAACTGTTGGGTT+AGG + chr1_3:57757068-57757087 Msa0128120:CDS 45.0%
ACCTGATGTTATGCCTCTTC+GGG + chr1_3:57757117-57757136 Msa0128120:intron 45.0%
GTGAGCAGCAATCTTCAATG+AGG - chr1_3:57757290-57757309 None:intergenic 45.0%
ATCTTCAGACCAACCCAAGT+GGG - chr1_3:57757506-57757525 None:intergenic 45.0%
!! TTGGGTTGGTCTGAAGATGT+TGG + chr1_3:57757508-57757527 Msa0128120:intron 45.0%
! TTGGTCTGAAGATGTTGGCT+TGG + chr1_3:57757513-57757532 Msa0128120:intron 45.0%
!! TGGTCTGAAGATGTTGGCTT+GGG + chr1_3:57757514-57757533 Msa0128120:intron 45.0%
!! TCAATTTCGGTGGGCTAGTT+CGG + chr1_3:57757586-57757605 Msa0128120:intron 45.0%
AGGAGAAGATCTAAACACGC+CGG - chr1_3:57757954-57757973 None:intergenic 45.0%
!! CATAGGTTTTGTCTCGGTTG+TGG + chr1_3:57758076-57758095 Msa0128120:intron 45.0%
TGCAGTTGGGACAAAAGCTA+GGG - chr1_3:57758220-57758239 None:intergenic 45.0%
TTGCAGTTGGGACAAAAGCT+AGG - chr1_3:57758221-57758240 None:intergenic 45.0%
TCACACTCTTTGTACAGCTG+TGG + chr1_3:57758728-57758747 Msa0128120:intron 45.0%
CACACTCTTTGTACAGCTGT+GGG + chr1_3:57758729-57758748 Msa0128120:intron 45.0%
ACACTCTTTGTACAGCTGTG+GGG + chr1_3:57758730-57758749 Msa0128120:intron 45.0%
TTGGGGAAGTCTGATGTTTC+TGG + chr1_3:57758950-57758969 Msa0128120:CDS 45.0%
!! GGAAGTCTGATGTTTCTGGA+TGG + chr1_3:57758954-57758973 Msa0128120:CDS 45.0%
! GATTACCTAGGAGAGTACAC+GGG + chr1_3:57759085-57759104 Msa0128120:CDS 45.0%
ACAGAGAAGCTGATAAGCGT+GGG + chr1_3:57759122-57759141 Msa0128120:CDS 45.0%
CTGTTTCGCTGTATTTCCGT+TGG + chr1_3:57759293-57759312 Msa0128120:intron 45.0%
AAACCCCAACTGCTATGCAA+AGG + chr1_3:57759477-57759496 Msa0128120:CDS 45.0%
TCACCTTTGCATAGCAGTTG+GGG - chr1_3:57759483-57759502 None:intergenic 45.0%
AAAGTGAGTGATTGCGACAG+AGG + chr1_3:57759630-57759649 Msa0128120:intron 45.0%
AAGTGAGTGATTGCGACAGA+GGG + chr1_3:57759631-57759650 Msa0128120:intron 45.0%
ATCATAGAAGAGCTCCTCAC+CGG - chr1_3:57759989-57760008 None:intergenic 45.0%
GACGAATCAGCAATTCCACA+AGG + chr1_3:57760069-57760088 Msa0128120:CDS 45.0%
ATTGGCCATGGCTCATCAAT+GGG - chr1_3:57760115-57760134 None:intergenic 45.0%
GTCCAGCTTGTACAAACTTG+AGG + chr1_3:57760135-57760154 Msa0128120:three_prime_UTR 45.0%
AGCCTCAAGTTTGTACAAGC+TGG - chr1_3:57760140-57760159 None:intergenic 45.0%
GACAAACTCGTGACATCTCA+TGG + chr1_3:57760183-57760202 Msa0128120:three_prime_UTR 45.0%
TTGAGCAACTGCCACTGAAA+AGG + chr1_3:57760213-57760232 Msa0128120:three_prime_UTR 45.0%
TACTCAGGATACCAACTGCT+AGG - chr1_3:57760358-57760377 None:intergenic 45.0%
TAATGTGCTGGGCATCCAAA+AGG - chr1_3:57760390-57760409 None:intergenic 45.0%
GTAACGTAACTGTGGACGCA+CGG - chr1_3:57751446-57751465 None:intergenic 50.0%
!! ACAACAACAGGGAGCATCCA+TGG + chr1_3:57751595-57751614 Msa0128120:exon 50.0%
! AGAGCCGCCAAATGATGATG+TGG + chr1_3:57751816-57751835 Msa0128120:CDS 50.0%
! GAGCCGCCAAATGATGATGT+GGG + chr1_3:57751817-57751836 Msa0128120:CDS 50.0%
TGGATTGAATTCTCTCGGCC+TGG - chr1_3:57751882-57751901 None:intergenic 50.0%
AACCAGGGACTCTTCACAGA+CGG + chr1_3:57752261-57752280 Msa0128120:CDS 50.0%
!! TATGGTTTTACCCAGGGTCC+AGG + chr1_3:57752343-57752362 Msa0128120:CDS 50.0%
! GGAACACGGGTTAAATGAGG+AGG + chr1_3:57753136-57753155 Msa0128120:CDS 50.0%
GGGCACCAGTTTAGAAATCC+AGG + chr1_3:57753187-57753206 Msa0128120:CDS 50.0%
GACCAGCATCCTAAAAGCTC+AGG + chr1_3:57753395-57753414 Msa0128120:CDS 50.0%
!!! CTCCTGAGCTTTTAGGATGC+TGG - chr1_3:57753400-57753419 None:intergenic 50.0%
GACAGTCAAAAATCTGCCGC+AGG - chr1_3:57753585-57753604 None:intergenic 50.0%
ACAGTTTGGTCTGAGCCTGT+AGG + chr1_3:57753731-57753750 Msa0128120:CDS 50.0%
!! AGGTAGCACTGATCACCACA+TGG - chr1_3:57753767-57753786 None:intergenic 50.0%
TGGTGATCAGTGCTACCTTC+AGG + chr1_3:57753769-57753788 Msa0128120:CDS 50.0%
! TTCAACTCCCGGGTCTTTTC+GGG + chr1_3:57754199-57754218 Msa0128120:CDS 50.0%
AGTGTAGTACTCTGACTGCC+AGG - chr1_3:57754287-57754306 None:intergenic 50.0%
TGAGTCACATTGTGCCGTGT+CGG - chr1_3:57754396-57754415 None:intergenic 50.0%
TCTGCAGTTGCCTCATAGCT+AGG + chr1_3:57755252-57755271 Msa0128120:intron 50.0%
GCAGGGTAAAAGATGGGAAC+AGG - chr1_3:57755433-57755452 None:intergenic 50.0%
CACTCATAAGGCCTTGGGTT+TGG + chr1_3:57755904-57755923 Msa0128120:intron 50.0%
TTAGCCAAAGCCCAAACCCA+AGG - chr1_3:57755918-57755937 None:intergenic 50.0%
! TTGGGCTTTGGCTAATGCAG+AGG + chr1_3:57755923-57755942 Msa0128120:intron 50.0%
AGATGGCATGTCTTGGTCCT+AGG - chr1_3:57756291-57756310 None:intergenic 50.0%
TCGGTCTAGATGGCATGTCT+TGG - chr1_3:57756298-57756317 None:intergenic 50.0%
AAGACATGCCATCTAGACCG+AGG + chr1_3:57756297-57756316 Msa0128120:CDS 50.0%
CCGAGGTTGCTGAGAAAAAG+AGG + chr1_3:57756314-57756333 Msa0128120:CDS 50.0%
CTGCTGGTCACCCAACAATA+TGG + chr1_3:57756369-57756388 Msa0128120:CDS 50.0%
GCAGCTCTTCGAACAACTGA+AGG - chr1_3:57756954-57756973 None:intergenic 50.0%
GTTCGAAGAGCTGCAAGAAC+CGG + chr1_3:57756960-57756979 Msa0128120:CDS 50.0%
CACAATGGCAACCTCTGAAC+CGG - chr1_3:57756982-57757001 None:intergenic 50.0%
! CAATGCCCATGTTTTGCTGC+TGG + chr1_3:57757025-57757044 Msa0128120:CDS 50.0%
! ACCCGAAGAGGCATAACATC+AGG - chr1_3:57757121-57757140 None:intergenic 50.0%
CATCTTCAGACCAACCCAAG+TGG - chr1_3:57757507-57757526 None:intergenic 50.0%
!! AAGATGTTGGCTTGGGACCT+TGG + chr1_3:57757521-57757540 Msa0128120:intron 50.0%
ATCGAACCAGAGACCTTGAG+AGG - chr1_3:57757555-57757574 None:intergenic 50.0%
TCCCCAGTGTCAATTTCGGT+GGG + chr1_3:57757577-57757596 Msa0128120:intron 50.0%
AGCCCACCGAAATTGACACT+GGG - chr1_3:57757582-57757601 None:intergenic 50.0%
TAGCCCACCGAAATTGACAC+TGG - chr1_3:57757583-57757602 None:intergenic 50.0%
TACAAGACAGGTCAGGGAAG+AGG - chr1_3:57757726-57757745 None:intergenic 50.0%
CCTCTGCCATCTTATCCTTC+CGG + chr1_3:57757932-57757951 Msa0128120:intron 50.0%
AACACGCCGGAAGGATAAGA+TGG - chr1_3:57757941-57757960 None:intergenic 50.0%
GAAGATCTAAACACGCCGGA+AGG - chr1_3:57757950-57757969 None:intergenic 50.0%
CCAGAAAGACTACAAGGTGG+AGG - chr1_3:57757974-57757993 None:intergenic 50.0%
CCTCCACCTTGTAGTCTTTC+TGG + chr1_3:57757971-57757990 Msa0128120:intron 50.0%
TAGGGCCATACTGCAATTGG+AGG - chr1_3:57758202-57758221 None:intergenic 50.0%
AGCTAGGGCCATACTGCAAT+TGG - chr1_3:57758205-57758224 None:intergenic 50.0%
AGCTAGAGTCGGATCACGTA+TGG - chr1_3:57758262-57758281 None:intergenic 50.0%
TCTTTGTACAGCTGTGGGGA+TGG + chr1_3:57758734-57758753 Msa0128120:intron 50.0%
TGGATGGGGAGCCTTCTTAA+AGG + chr1_3:57758970-57758989 Msa0128120:CDS 50.0%
CACAGAGAAGCTGATAAGCG+TGG + chr1_3:57759121-57759140 Msa0128120:CDS 50.0%
AGCAGTTGGGGTTTGATGAG+TGG - chr1_3:57759471-57759490 None:intergenic 50.0%
CCTATAGCAGCAGTGCAAGA+GGG - chr1_3:57759909-57759928 None:intergenic 50.0%
ACCTATAGCAGCAGTGCAAG+AGG - chr1_3:57759910-57759929 None:intergenic 50.0%
GTTGCTGGAGATCATCGAGT+TGG + chr1_3:57759937-57759956 Msa0128120:CDS 50.0%
!! TCGAGTTGGCATATTCGCCA+AGG + chr1_3:57759951-57759970 Msa0128120:CDS 50.0%
GCCAAGGAACACATTGATGC+CGG + chr1_3:57759967-57759986 Msa0128120:CDS 50.0%
ACCGGCATCAATGTGTTCCT+TGG - chr1_3:57759971-57759990 None:intergenic 50.0%
TCCAGATCAAGCACCTCCAT+GGG + chr1_3:57760020-57760039 Msa0128120:CDS 50.0%
CCATGGCTCATCAATGGGAT+TGG - chr1_3:57760110-57760129 None:intergenic 50.0%
CCAATCCCATTGATGAGCCA+TGG + chr1_3:57760107-57760126 Msa0128120:exon 50.0%
CATTGGCCATGGCTCATCAA+TGG - chr1_3:57760116-57760135 None:intergenic 50.0%
TACAAGCTGGACATTGGCCA+TGG - chr1_3:57760127-57760146 None:intergenic 50.0%
GTTTCTGTCTCCTGGACCCT+GGG - chr1_3:57752356-57752375 None:intergenic 55.0%
GGTCCAGGAGACAGAAACCA+GGG + chr1_3:57752358-57752377 Msa0128120:CDS 55.0%
TTGCCCTGGTTTCTGTCTCC+TGG - chr1_3:57752364-57752383 None:intergenic 55.0%
TCTGCCGCAGGAAAGCAGAA+AGG - chr1_3:57753573-57753592 None:intergenic 55.0%
CCAGGTTCTTCTGCACTGGA+TGG - chr1_3:57754269-57754288 None:intergenic 55.0%
CCATCCAGTGCAGAAGAACC+TGG + chr1_3:57754266-57754285 Msa0128120:CDS 55.0%
ACTGCCAGGTTCTTCTGCAC+TGG - chr1_3:57754273-57754292 None:intergenic 55.0%
GAGGCATGTCAATTCCCCAC+AGG + chr1_3:57755330-57755349 Msa0128120:CDS 55.0%
TACGAAAAGGCCTCACTCGG+TGG + chr1_3:57755558-57755577 Msa0128120:intron 55.0%
AAGGCCTTGGGTTTGGGCTT+TGG + chr1_3:57755911-57755930 Msa0128120:intron 55.0%
CTCAGCAACCTCGGTCTAGA+TGG - chr1_3:57756308-57756327 None:intergenic 55.0%
! AGCTGCAAGAACCGGTTCAG+AGG + chr1_3:57756968-57756987 Msa0128120:CDS 55.0%
CACGCCCAGCAGCAAAACAT+GGG - chr1_3:57757033-57757052 None:intergenic 55.0%
TCACGCCCAGCAGCAAAACA+TGG - chr1_3:57757034-57757053 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG - chr1_3:57757541-57757560 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr1_3:57757539-57757558 Msa0128120:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+TGG + chr1_3:57757546-57757565 Msa0128120:intron 55.0%
CTCCCCAGTGTCAATTTCGG+TGG + chr1_3:57757576-57757595 Msa0128120:intron 55.0%
GCCCACCGAAATTGACACTG+GGG - chr1_3:57757581-57757600 None:intergenic 55.0%
CCGGAAGGATAAGATGGCAG+AGG - chr1_3:57757935-57757954 None:intergenic 55.0%
AGCTGTGGGGATGGTACACT+GGG + chr1_3:57758743-57758762 Msa0128120:intron 55.0%
GTACACTGGGAGAGCCACAT+CGG + chr1_3:57758756-57758775 Msa0128120:CDS 55.0%
GTTCACCCGTGTACTCTCCT+AGG - chr1_3:57759093-57759112 None:intergenic 55.0%
CCCTCTTGCACTGCTGCTAT+AGG + chr1_3:57759906-57759925 Msa0128120:intron 55.0%
GGAACACATTGATGCCGGTG+AGG + chr1_3:57759972-57759991 Msa0128120:CDS 55.0%
GTCCAGATCAAGCACCTCCA+TGG + chr1_3:57760019-57760038 Msa0128120:CDS 55.0%
TCAGGTTTACGAGCCCATGG+AGG - chr1_3:57760036-57760055 None:intergenic 55.0%
TCCATGGGCTCGTAAACCTG+AGG + chr1_3:57760035-57760054 Msa0128120:CDS 55.0%
CCATGGGCTCGTAAACCTGA+GGG + chr1_3:57760036-57760055 Msa0128120:CDS 55.0%
TCGTCTCTCTTGGAACCCTC+AGG - chr1_3:57760054-57760073 None:intergenic 55.0%
CTCCGTCTGTGAAGAGTCCC+TGG - chr1_3:57752266-57752285 None:intergenic 60.0%
CAGGGACTCTTCACAGACGG+AGG + chr1_3:57752264-57752283 Msa0128120:CDS 60.0%
GGTTTCTGTCTCCTGGACCC+TGG - chr1_3:57752357-57752376 None:intergenic 60.0%
GGGTCCAGGAGACAGAAACC+AGG + chr1_3:57752357-57752376 Msa0128120:CDS 60.0%
!! CCAGGCACCGACGACAGAAA+AGG - chr1_3:57753490-57753509 None:intergenic 60.0%
!! CCTTTTCTGTCGTCGGTGCC+TGG + chr1_3:57753487-57753506 Msa0128120:CDS 60.0%
CAGCTGTGGGGATGGTACAC+TGG + chr1_3:57758742-57758761 Msa0128120:intron 60.0%
TGACCTTCTCCACGCCGATG+TGG - chr1_3:57758773-57758792 None:intergenic 60.0%
CGGCGTGGAGAAGGTCAATG+CGG + chr1_3:57758776-57758795 Msa0128120:CDS 60.0%
!! GCCCATGGAGGTGCTTGATC+TGG - chr1_3:57760024-57760043 None:intergenic 60.0%
CCCTCAGGTTTACGAGCCCA+TGG - chr1_3:57760039-57760058 None:intergenic 60.0%
GAGCCACATCGGCGTGGAGA+AGG + chr1_3:57758767-57758786 Msa0128120:CDS 65.0%
CTGGGAGAGCCACATCGGCG+TGG + chr1_3:57758761-57758780 Msa0128120:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 57751417 57760493 57751417 ID=Msa0128120;Name=Msa0128120
chr1_3 mRNA 57751417 57760493 57751417 ID=Msa0128120-mRNA-1;Parent=Msa0128120;Name=Msa0128120-mRNA-1;_AED=0.14;_eAED=0.14;_QI=197|0.93|0.94|1|0.81|0.88|17|374|807
chr1_3 exon 57751417 57751616 57751417 ID=Msa0128120-mRNA-1:exon:18369;Parent=Msa0128120-mRNA-1
chr1_3 exon 57751814 57751906 57751814 ID=Msa0128120-mRNA-1:exon:18370;Parent=Msa0128120-mRNA-1
chr1_3 exon 57752196 57752467 57752196 ID=Msa0128120-mRNA-1:exon:18371;Parent=Msa0128120-mRNA-1
chr1_3 exon 57752631 57752792 57752631 ID=Msa0128120-mRNA-1:exon:18372;Parent=Msa0128120-mRNA-1
chr1_3 exon 57753124 57753208 57753124 ID=Msa0128120-mRNA-1:exon:18373;Parent=Msa0128120-mRNA-1
chr1_3 exon 57753353 57753508 57753353 ID=Msa0128120-mRNA-1:exon:18374;Parent=Msa0128120-mRNA-1
chr1_3 exon 57753592 57753639 57753592 ID=Msa0128120-mRNA-1:exon:18375;Parent=Msa0128120-mRNA-1
chr1_3 exon 57753719 57753790 57753719 ID=Msa0128120-mRNA-1:exon:18376;Parent=Msa0128120-mRNA-1
chr1_3 exon 57754170 57754663 57754170 ID=Msa0128120-mRNA-1:exon:18377;Parent=Msa0128120-mRNA-1
chr1_3 exon 57755259 57755412 57755259 ID=Msa0128120-mRNA-1:exon:18378;Parent=Msa0128120-mRNA-1
chr1_3 exon 57756293 57756513 57756293 ID=Msa0128120-mRNA-1:exon:18379;Parent=Msa0128120-mRNA-1
chr1_3 exon 57756958 57757089 57756958 ID=Msa0128120-mRNA-1:exon:18380;Parent=Msa0128120-mRNA-1
chr1_3 exon 57758745 57758832 57758745 ID=Msa0128120-mRNA-1:exon:18381;Parent=Msa0128120-mRNA-1
chr1_3 exon 57758944 57758991 57758944 ID=Msa0128120-mRNA-1:exon:18382;Parent=Msa0128120-mRNA-1
chr1_3 exon 57759067 57759195 57759067 ID=Msa0128120-mRNA-1:exon:18383;Parent=Msa0128120-mRNA-1
chr1_3 exon 57759421 57759498 57759421 ID=Msa0128120-mRNA-1:exon:18384;Parent=Msa0128120-mRNA-1
chr1_3 exon 57759931 57760493 57759931 ID=Msa0128120-mRNA-1:exon:18385;Parent=Msa0128120-mRNA-1
chr1_3 five_prime_UTR 57751417 57751613 57751417 ID=Msa0128120-mRNA-1:five_prime_utr;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57751614 57751616 57751614 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57751814 57751906 57751814 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57752196 57752467 57752196 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57752631 57752792 57752631 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57753124 57753208 57753124 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57753353 57753508 57753353 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57753592 57753639 57753592 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57753719 57753790 57753719 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57754170 57754663 57754170 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57755259 57755412 57755259 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57756293 57756513 57756293 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57756958 57757089 57756958 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57758745 57758832 57758745 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57758944 57758991 57758944 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57759067 57759195 57759067 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57759421 57759498 57759421 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 CDS 57759931 57760119 57759931 ID=Msa0128120-mRNA-1:cds;Parent=Msa0128120-mRNA-1
chr1_3 three_prime_UTR 57760120 57760493 57760120 ID=Msa0128120-mRNA-1:three_prime_utr;Parent=Msa0128120-mRNA-1
Gene Sequence

>Msa0128120

ATGGAAGAGCCGCCAAATGATGATGTGGGAACCTTGTCCAACAAGATAAATCAGTTGCAAAAGCAAATCCAGGCCGAGAGAATTCAATCCATTAAGGAAAAACTTCAGAGGAACCAGAAGAAGCTGCAATGTCATACTTCAGGAATAATGTCAGCAGTATCAACCAGGGACTCTTCACAGACGGAGGAAAATACGACACGTTCAATTCTTTCCTCAAGAATGGACCGTCCTTTATGTAAATTCTATGGTTTTACCCAGGGTCCAGGAGACAGAAACCAGGGCAATCAAGACATGTCATCTGCTACAAGCATCAAGATTCCACGTATGGAAAGATTACCACCATATACATCTTGGATATTTTTGGACAGGAATCAGAGAATGGCTGACGATCAATCAGTTGTTGGAAGAAGACGGATCTATTATGATCAACGTGGAAGTGAGGCATTGATATGCAGTGACAGTGAGGAAGAATTAACAGAACCTGACGGTGAAAAACATGAATTTTGTGATGCTGAAGACCGTATTTTGTGTATGGCATTTGAGGAACACGGGTTAAATGAGGAGGTTTTGAATGTTGTTAGCAAGTATGTTGGGGGCACCAGTTTAGAAATCCAGGAGAGGTACAAAAGTATCAGAGAAAGTAATATTGGTAGGTTGGACCAGCATCCTAAAAGCTCAGGAGAACATGACTTTCCTATGAGCATGTATCTAGAGAAAAACCTGAGTGATGCATTAGATTCCCTTGATAACCTTTTCTGTCGTCGGTGCCTGATTTTTGACTGTCGACTGCATGGCTGTTCTCAACCTTTGATATATCCCAGTGAAAAGAAGACAGTTTGGTCTGAGCCTGTAGGTGATAGAAAACCATGTGGTGATCAGTGCTACCTTCAGTTAAAGGTTGTTAAAAGTTTTTCAAAAGATTCAACTCCCGGGTCTTTTCGGGATAAGAAAACTACAATTGTAGAGGAGACAGATGGGATATTGTCACCATCCAGTGCAGAAGAACCTGGCAGTCAGAGTACTACACTTCCGACAAGAATTGATTGTCATGGATATATCAATTTAAATGACCCTGACTCAGAAAACTTGAGTAAACGGAAAGTCACAAATCAGTCCGACACGGCACAATGTGACTCAAGATCGCTTCCTGATTCTCAGGATTCTTGTAAAAAGCTGAAGAGAATCTCAGATGTAGTTACTGTAATTACTGATAATAGCAAGAGCTTACATTTGGATGGACCAAAAGCTGTCACAAATGAGACAGAACTTAAAAATTCGTTGAATTCAATGGAAGAACGAGTTGATGGAATTCTTGGTTTCTCAGATTGGAAACCTCTAGAGAAAGAGTTATACTTGAAGGGAGTGGAAATGTTTGGCAGAAACAGTTGCCTCATAGCTAGGAACTTACTTTCTGGTTCGAAGACTTGCATGGAAATATCTAGTTATATGCATGATGGAGGCATGTCAATTCCCCACAGGTCTATTATTTCAGCTGGTTCAATCATGGACGACAAAGGAAAATTTGACACAGAGTGCACGGACCAAGACATGCCATCTAGACCGAGGTTGCTGAGAAAAAGAGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGTCTGCTGGTCACCCAACAATATGGAAAAGAATTGCTGATGGCAAAAACCAATCTTGCATGCAGTATACTCCATGTGGGTGTCAATCAATGTGTGGAAAGGATTGTTCTTGTCTTAATGGTGGAACATGCTGTGAAAAATATTGTGGTTGTTCGAAGAGCTGCAAGAACCGGTTCAGAGGTTGCCATTGTGCCAAGAGTCAATGTAGAAGTCGACAATGCCCATGTTTTGCTGCTGGGCGTGAATGTGATCCAGATGTCTGTCGAAACTGTTGGGTTAGCTGTGGGGATGGTACACTGGGAGAGCCACATCGGCGTGGAGAAGGTCAATGCGGCAATATGAGACTTCTTTTAAGGCAACAACAGAGGATTATCTTGGGGAAGTCTGATGTTTCTGGATGGGGAGCCTTCTTAAAGAATCCTGTTAACAAAAATGATTACCTAGGAGAGTACACGGGTGAACTGATCTCACACAGAGAAGCTGATAAGCGTGGGAAAATATATGATCGTGCGAATTCATCTTTCCTTTTCGATTTGAATGAGCAGTATGTTCTTGATGCTTATCGTAAAGGAGACAAGTTGAAATTTGCAAACCACTCATCAAACCCCAACTGCTATGCAAAGATGTTGGTTGCTGGAGATCATCGAGTTGGCATATTCGCCAAGGAACACATTGATGCCGGTGAGGAGCTCTTCTATGATTATTGCTATGGTCCAGATCAAGCACCTCCATGGGCTCGTAAACCTGAGGGTTCCAAGAGAGACGAATCAGCAATTCCACAAGGTAGAGCAAAGAAACACCAATCCCATTGA
Protein sequence

>Msa0128120

MEEPPNDDVGTLSNKINQLQKQIQAERIQSIKEKLQRNQKKLQCHTSGIMSAVSTRDSSQTEENTTRSILSSRMDRPLCKFYGFTQGPGDRNQGNQDMSSATSIKIPRMERLPPYTSWIFLDRNQRMADDQSVVGRRRIYYDQRGSEALICSDSEEELTEPDGEKHEFCDAEDRILCMAFEEHGLNEEVLNVVSKYVGGTSLEIQERYKSIRESNIGRLDQHPKSSGEHDFPMSMYLEKNLSDALDSLDNLFCRRCLIFDCRLHGCSQPLIYPSEKKTVWSEPVGDRKPCGDQCYLQLKVVKSFSKDSTPGSFRDKKTTIVEETDGILSPSSAEEPGSQSTTLPTRIDCHGYINLNDPDSENLSKRKVTNQSDTAQCDSRSLPDSQDSCKKLKRISDVVTVITDNSKSLHLDGPKAVTNETELKNSLNSMEERVDGILGFSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGSKTCMEISSYMHDGGMSIPHRSIISAGSIMDDKGKFDTECTDQDMPSRPRLLRKRGKTRKFKYSWKSAGHPTIWKRIADGKNQSCMQYTPCGCQSMCGKDCSCLNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGTLGEPHRRGEGQCGNMRLLLRQQQRIILGKSDVSGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNEQYVLDAYRKGDKLKFANHSSNPNCYAKMLVAGDHRVGIFAKEHIDAGEELFYDYCYGPDQAPPWARKPEGSKRDESAIPQGRAKKHQSH*