AlfalfaGEDB | Msa0080090

M. sativa cultivar zhongmu-4 / Msa0080090

KEGG: K02987|K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF08879.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080090	RHN80785.1	96.089	946	16	4	1	941	70	999	0.0	1866

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080090	sp\|Q9SSE9\|JMJ25_ARATH	35.526	532	268	11	392	901	412	890	2.08e-94	324
Msa0080090	sp\|Q9SSE9\|JMJ25_ARATH	35.429	175	94	3	198	367	155	315	1.15e-23	111

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080090	A0A396JX83	96.089	946	16	4	1	941	70	999	0.0	1866

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TFs/TRs:

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Gene ID	Type	Classification
Msa0080090	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0080090	0.867829	1.025412e-65	-8.615850e-47
Msa0006070	Msa0080090	0.821036	4.997209e-53	-8.615850e-47
Msa0006110	Msa0080090	0.814087	1.842205e-51	-8.615850e-47
Msa0009180	Msa0080090	0.808646	2.796522e-50	-8.615850e-47
Msa0011170	Msa0080090	0.801141	1.035594e-48	-8.615850e-47
Msa0017510	Msa0080090	0.827216	1.768173e-54	-8.615850e-47
Msa0020420	Msa0080090	0.801533	8.610275e-49	-8.615850e-47
Msa0020930	Msa0080090	0.801345	9.409448e-49	-8.615850e-47
Msa0021510	Msa0080090	0.802853	4.606724e-49	-8.615850e-47
Msa0032430	Msa0080090	0.811991	5.305816e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080090	MtrunA17_Chr1g0192011	96.089	946	16	4	1	941	70	999	0.0	1866
Msa0080090	MtrunA17_Chr7g0275771	38.387	831	390	19	185	914	127	936	0.0	553
Msa0080090	MtrunA17_Chr4g0075261	36.878	743	404	15	191	905	162	867	8.00e-153	473
Msa0080090	MtrunA17_Chr1g0211711	37.368	760	369	20	198	903	343	1049	1.40e-144	456
Msa0080090	MtrunA17_Chr5g0426961	35.696	790	382	17	177	903	107	833	4.79e-136	428
Msa0080090	MtrunA17_Chr1g0183311	35.864	764	405	15	198	903	144	880	6.76e-133	421
Msa0080090	MtrunA17_Chr2g0289121	34.133	750	399	14	189	911	147	828	6.42e-128	406
Msa0080090	MtrunA17_Chr2g0281051	32.478	779	441	20	195	909	204	961	1.08e-120	391
Msa0080090	MtrunA17_Chr1g0211661	34.571	700	359	15	192	845	219	865	3.19e-115	374
Msa0080090	MtrunA17_Chr1g0147021	38.596	513	267	11	185	673	857	1345	2.26e-106	363

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080090	AT1G09060.2	52.116	969	383	18	2	937	5	925	0.0	944
Msa0080090	AT1G09060.1	52.116	969	383	18	2	937	5	925	0.0	944
Msa0080090	AT1G09060.4	52.116	969	383	18	2	937	19	939	0.0	943
Msa0080090	AT1G09060.3	52.116	969	383	18	2	937	19	939	0.0	943
Msa0080090	AT4G00990.1	37.000	800	425	16	168	905	50	832	5.02e-170	517
Msa0080090	AT1G11950.1	36.828	744	373	12	198	907	193	873	1.61e-159	491
Msa0080090	AT1G11950.3	36.828	744	373	12	198	907	193	873	1.61e-159	491
Msa0080090	AT1G62310.1	35.356	758	397	13	171	891	182	883	1.06e-147	460
Msa0080090	AT4G00990.3	35.657	746	401	16	168	851	50	778	2.68e-147	456
Msa0080090	AT4G00990.2	35.676	740	397	16	168	845	50	772	4.98e-146	452

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Find 330 sgRNAs with CRISPR-Local

Find 715 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTGAGGCTAGGCCC+TGG	0.533144	1_2:+58329112	Msa0080100:three_prime_UTR
AAAATAGCTCCACCATAAAG+AGG	0.531360	1_2:+58332283	None:intergenic
AAAATGCATTGGAAGGAATT+TGG	0.117264	1_2:-58332447	Msa0080090:CDS
AAACCATTGCAGTCAAATTA+GGG	0.411485	1_2:+58329632	Msa0080100:three_prime_UTR
AAAGACTGAGGCTAGGCCCT+GGG	0.545030	1_2:+58329113	Msa0080100:three_prime_UTR
AAAGATTCGACTATGGATCA+AGG	0.524675	1_2:-58332618	Msa0080090:CDS
AAATAAAATTTATATCCAGT+AGG	0.661536	1_2:+58329141	Msa0080100:three_prime_UTR
AAATACTTGCTTAACGATAA+TGG	0.238092	1_2:+58334102	None:intergenic
AAATATTGAAGCTGAAGGAT+TGG	0.523058	1_2:-58333755	Msa0080090:CDS
AAATGCATTGGAAGGAATTT+GGG	0.300110	1_2:-58332446	Msa0080090:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTCTTATTCAGAGAGAA+TGG	-	chr1_2:58328000-58328019	Msa0080090:three_prime_UTR	30.0%
TCCAAATTAACATCAGAATC+GGG	+	chr1_2:58328223-58328242	Msa0080100:CDS	30.0%
TGTTCTGTTTGAAGAGAATT+GGG	-	chr1_2:58328453-58328472	Msa0080090:three_prime_UTR	30.0%
GTCCTTAAATATGACTCTAT+TGG	-	chr1_2:58328593-58328612	Msa0080090:intron	30.0%
CTTTCTTAATTCCAGTGATT+AGG	+	chr1_2:58328619-58328638	Msa0080100:intron	30.0%
TTAGTGAAGATACCTTCTTT+CGG	-	chr1_2:58329125-58329144	Msa0080090:three_prime_UTR	30.0%
ATCTTCTGAATTTCATCCAA+TGG	+	chr1_2:58329227-58329246	Msa0080100:three_prime_UTR	30.0%
ACGTAGTGATAATTCCATAA+AGG	-	chr1_2:58329289-58329308	Msa0080090:three_prime_UTR	30.0%
CAACTTCAAAACATTGTTCT+CGG	+	chr1_2:58329510-58329529	Msa0080100:three_prime_UTR	30.0%
GAAATAATGGTTTCTTTCAC+AGG	-	chr1_2:58329659-58329678	Msa0080090:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	58327680	58336785	58327680	ID=Msa0080090;Name=Msa0080090
chr1_2	mRNA	58327680	58336785	58327680	ID=Msa0080090-mRNA-1;Parent=Msa0080090;Name=Msa0080090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=186\|0.93\|0.94\|1\|0.75\|0.64\|17\|1494\|941
chr1_2	exon	58327680	58327796	58327680	ID=Msa0080090-mRNA-1:exon:18662;Parent=Msa0080090-mRNA-1
chr1_2	exon	58327938	58328274	58327938	ID=Msa0080090-mRNA-1:exon:18661;Parent=Msa0080090-mRNA-1
chr1_2	exon	58328396	58328606	58328396	ID=Msa0080090-mRNA-1:exon:18660;Parent=Msa0080090-mRNA-1
chr1_2	exon	58328753	58329681	58328753	ID=Msa0080090-mRNA-1:exon:18659;Parent=Msa0080090-mRNA-1
chr1_2	exon	58329835	58329905	58329835	ID=Msa0080090-mRNA-1:exon:18658;Parent=Msa0080090-mRNA-1
chr1_2	exon	58330057	58330176	58330057	ID=Msa0080090-mRNA-1:exon:18657;Parent=Msa0080090-mRNA-1
chr1_2	exon	58331148	58331233	58331148	ID=Msa0080090-mRNA-1:exon:18656;Parent=Msa0080090-mRNA-1
chr1_2	exon	58332242	58332314	58332242	ID=Msa0080090-mRNA-1:exon:18655;Parent=Msa0080090-mRNA-1
chr1_2	exon	58332431	58332835	58332431	ID=Msa0080090-mRNA-1:exon:18654;Parent=Msa0080090-mRNA-1
chr1_2	exon	58333518	58333847	58333518	ID=Msa0080090-mRNA-1:exon:18653;Parent=Msa0080090-mRNA-1
chr1_2	exon	58333976	58334606	58333976	ID=Msa0080090-mRNA-1:exon:18652;Parent=Msa0080090-mRNA-1
chr1_2	exon	58334688	58334784	58334688	ID=Msa0080090-mRNA-1:exon:18651;Parent=Msa0080090-mRNA-1
chr1_2	exon	58334915	58335047	58334915	ID=Msa0080090-mRNA-1:exon:18650;Parent=Msa0080090-mRNA-1
chr1_2	exon	58335155	58335254	58335155	ID=Msa0080090-mRNA-1:exon:18649;Parent=Msa0080090-mRNA-1
chr1_2	exon	58335355	58335494	58335355	ID=Msa0080090-mRNA-1:exon:18648;Parent=Msa0080090-mRNA-1
chr1_2	exon	58335907	58336451	58335907	ID=Msa0080090-mRNA-1:exon:18647;Parent=Msa0080090-mRNA-1
chr1_2	exon	58336605	58336785	58336605	ID=Msa0080090-mRNA-1:exon:18646;Parent=Msa0080090-mRNA-1
chr1_2	five_prime_UTR	58336605	58336785	58336605	ID=Msa0080090-mRNA-1:five_prime_utr;Parent=Msa0080090-mRNA-1
chr1_2	five_prime_UTR	58336447	58336451	58336447	ID=Msa0080090-mRNA-1:five_prime_utr;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58335907	58336446	58335907	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58335355	58335494	58335355	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58335155	58335254	58335155	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58334915	58335047	58334915	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58334688	58334784	58334688	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58333976	58334606	58333976	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58333518	58333847	58333518	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58332431	58332835	58332431	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58332242	58332314	58332242	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58331148	58331233	58331148	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58330057	58330176	58330057	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58329835	58329905	58329835	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	CDS	58329582	58329681	58329582	ID=Msa0080090-mRNA-1:cds;Parent=Msa0080090-mRNA-1
chr1_2	three_prime_UTR	58328753	58329581	58328753	ID=Msa0080090-mRNA-1:three_prime_utr;Parent=Msa0080090-mRNA-1
chr1_2	three_prime_UTR	58328396	58328606	58328396	ID=Msa0080090-mRNA-1:three_prime_utr;Parent=Msa0080090-mRNA-1
chr1_2	three_prime_UTR	58327938	58328274	58327938	ID=Msa0080090-mRNA-1:three_prime_utr;Parent=Msa0080090-mRNA-1
chr1_2	three_prime_UTR	58327680	58327796	58327680	ID=Msa0080090-mRNA-1:three_prime_utr;Parent=Msa0080090-mRNA-1

Gene Sequence

>Msa0080090

ATGGATCAAGCAAGATCGAACAACAACATCGATGAGAATGTAGGAATTCCAGACGATTTACGTTGCAAGAGATCAGACGGGAAGCAATGGAGATGCACGGCCATGTCGATGCCAGATAAAACCGTTTGCGAGAAGCATTACATTCAAGCCAAGAAAAGAGCAGCGAATTCTGCCATGAGAGCTAATCTCAAGAAATCTAAGCCCGATTCTGATGTTAATTTGGAAAGTAAGAGTGATGATTTTGATGCTCCGCTTTCAACTGCGGTTAATAATAATAATAATCATCGTTCTTCCTCTTCCTCTGGGAAGAAGTTGTTTGATAAGGTTTCTAAGAATCAGTTTCGTTATACTCCTGAGGGTGTTCTTGGTTCTTCTTCTGGAAATAATGTTTCCAATCCTGGTGATGGTGGTGATGTTTCGCCTGATGAGGATGCTGTTCTGTTTGAAGAGAATTGGGTCTCGAATGATTCGCAGCATGCTTCTGGTGACGATTCTGCCGGGAAAATGACAGGCAGGAGCATGGATGTTGATGTCAACACTGAATGTTCTAATGGAACATCGGATTCTTCTCAAGAAACTGGCAGGCAGACTTGCCATCAGTGTAGGAAGAATGTTAAAGATGTTAGTTGGTGCCTTAAGTGTGATAGGAGAGGATACTGTGATAGCTGCATATCAACATGGTATTCTGACATTCCATTGGATGAAATTCAGAAGATATGTCCTGCATGTCGTGGTATATGCAATTGTAAAATTTGCTTACGTAGTGATAATTCCATAAAGGTTCGGATACGTGAGATACCTGTACTGGATAAGTTACAGTATTTGCACGTGTTGCTCTCGTCAGTGCTTCCCGTGGTAAAGCAGATCCACCGAGAACAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCAAGGACAAAGTTGAATGCAGACGAGCAGATGTGCTGGTACATCTATGACACTTATATTGAAATTGATGGTTTTTACGGCAATTTATGTAGGATACCTATCACTGATTATCATCGACGCTGCCCAAGTTGTTCATATGATTTGTGCCTTATTTGTTGTCGAGATCTTCGGGAAGCTACTTTACATCAGAGTGAAGAACCTCAAACTGAGCATGCAAAAACTACTGATCGAAACATATTAAGCAAGTTTCCTCTCTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTATTCATCATTAAATTTAAGTCGGATTTTCAAGATGAATTGGGTCGCAAAATTGGTAAAAAATGTAGAGGAAATGGTTAGTGGATGCAGAACGAGTGATGCTGATGGTCCGCCATTGAATGCTCTCAGACTTTGCCAATATTCTCAAAGAGAGGCTAGCAATGATAATTATCTTTATTGTCCAACATCTGAAGAACTCAAAACTGATGGGATTGGCATGTTTAGAACACACTGGAAAACTGGTGAGCCCATTATCGTTAAGCAAGTATTTGATAGGTCATCAATTTCAAGCTGGGACCCGTTGGTCATATGGAGAGGGATTCTTGAGACAACAGATGAGAATATGAAAGATGATAACAGAATGGTTAAGGCCCTAGATTGCTTAGATGGGTCTGAGATTGATATCGAGCTTAATCAGTTCATGAAAGGATATTCTGAGGGGCGTATTCTTGAAAATGGTTGGCCACAAATATTGAAGCTGAAGGATTGGCCTACACCTCGTGCATCTGAAGAATTTCTTTTGTACCAAAGACCTGAATTTATCAGCAAACTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGATGTAGGACCCAAGATATATATATCTTATGGGATTACTGATGAACTTGGCAGAGGTGATTCTGTCACAAAACTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATTCAAGTGAAGTAAAGCTGAAGGACTGGCAGCGGACAAAAGTTGAAATGATGCAGAAAACTTCCAAGGAATCTGAGGCGAAAGAATCTCATGGGGATCCAGATATATGTTCAAGAGCGAGTTCACCCGATTCATCCTTTTGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAAGATTCGACTATGGATCAAGGGGTTGAAGTTTATTCTAGTGCTGAAGGGAATTTGGTCAATTGTGAAATTCCATTAAGAGAAAATGGAGACGTCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTAAAAATGCATTGGAAGGAATTTGGGAAGTCAGATGATATAGTTACATGGCCTCTTTATGGTGGAGCTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCGTGGTCATTTGAACAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTTCAAGCAAGAAATGTTCAGTCCACTGTTCAGTTGGCCCTTGATTTCTTATCTCCTGAAAGCCTGGGAGAGGCTGTAAGATTGGCAGAGGAGGTTCGCCGTCTACCTAATGAACATGAAGCAAAACTTCAAGTTTTGGAGGTGGGGAAGATATCTCTTTATGCAGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGTGGAGAGATTGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAACTACGAGAAAATGTCTAAGCAGAGGCAGATAACTTGTGCTTGA

Protein sequence

>Msa0080090

MDQARSNNNIDENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKSKPDSDVNLESKSDDFDAPLSTAVNNNNNHRSSSSSGKKLFDKVSKNQFRYTPEGVLGSSSGNNVSNPGDGGDVSPDEDAVLFEENWVSNDSQHASGDDSAGKMTGRSMDVDVNTECSNGTSDSSQETGRQTCHQCRKNVKDVSWCLKCDRRGYCDSCISTWYSDIPLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRTKLNADEQMCWYIYDTYIEIDGFYGNLCRIPITDYHRRCPSCSYDLCLICCRDLREATLHQSEEPQTEHAKTTDRNILSKFPLWRSNDNGSIPCPPKEYGGCGYSSLNLSRIFKMNWVAKLVKNVEEMVSGCRTSDADGPPLNALRLCQYSQREASNDNYLYCPTSEELKTDGIGMFRTHWKTGEPIIVKQVFDRSSISSWDPLVIWRGILETTDENMKDDNRMVKALDCLDGSEIDIELNQFMKGYSEGRILENGWPQILKLKDWPTPRASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGITDELGRGDSVTKLHFNMRDMVYLLVHSSEVKLKDWQRTKVEMMQKTSKESEAKESHGDPDICSRASSPDSSFCTKINGLDLESDQKDSTMDQGVEVYSSAEGNLVNCEIPLRENGDVSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDIVTWPLYGGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLALDFLSPESLGEAVRLAEEVRRLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGGEIGYGDPNLTAMVSENYEKMSKQRQITCA*