AlfalfaGEDB | Msa0185270

M. sativa cultivar zhongmu-4 / Msa0185270

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13041.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0185270	sp\|Q9LW84\|PP236_ARATH	69.130	609	185	2	1	608	35	641	0.0	900
Msa0185270	sp\|Q9LW84\|PP236_ARATH	26.199	271	196	3	95	363	374	642	1.42e-19	96.3

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0185270	G7II50	98.026	608	12	0	1	608	32	639	0.0	1234

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024680	Msa0185270	0.806626	7.509602e-50	-8.615850e-47
Msa0028060	Msa0185270	0.802745	4.848203e-49	-8.615850e-47
Msa0029540	Msa0185270	-0.813226	2.849379e-51	-8.615850e-47
Msa0030310	Msa0185270	0.815906	7.272101e-52	-8.615850e-47
Msa0138970	Msa0185270	-0.814302	1.651447e-51	-8.615850e-47
Msa0145950	Msa0185270	0.819599	1.067333e-52	-8.615850e-47
Msa0172350	Msa0185270	0.834079	3.688141e-56	-8.615850e-47
Msa0185270	Msa0225630	0.881090	3.204251e-70	-8.615850e-47
Msa0185270	Msa0259560	0.807351	5.273434e-50	-8.615850e-47
Msa0185270	Msa0266480	0.871935	4.675796e-67	-8.615850e-47

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0185270	MtrunA17_Chr2g0331911	98.026	608	12	0	1	608	32	639	0.0	1234
Msa0185270	MtrunA17_Chr5g0446031	28.499	593	384	7	44	600	83	671	5.69e-84	281
Msa0185270	MtrunA17_Chr5g0446031	29.764	467	325	3	135	601	384	847	5.74e-68	237
Msa0185270	MtrunA17_Chr5g0446031	28.921	491	336	7	95	578	413	897	9.57e-55	200
Msa0185270	MtrunA17_Chr4g0060641	28.277	534	380	3	64	596	10	541	2.12e-65	228
Msa0185270	MtrunA17_Chr4g0060641	27.579	475	339	4	125	596	210	682	1.31e-56	204
Msa0185270	MtrunA17_Chr4g0060641	23.944	497	306	5	182	607	22	517	1.87e-38	151
Msa0185270	MtrunA17_Chr4g0060641	28.571	378	230	4	90	430	317	691	4.98e-37	147
Msa0185270	MtrunA17_Chr4g0060641	25.234	214	160	0	93	306	495	708	3.06e-15	79.3
Msa0185270	MtrunA17_Chr1g0162741	27.521	585	385	7	46	596	26	605	3.25e-65	226

Showing 1 to 10 of 1,676 entries

Previous1 2 3 4 5…168Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0185270	AT3G16010.1	69.130	609	185	2	1	608	35	641	0.0	900
Msa0185270	AT3G16010.1	26.199	271	196	3	95	363	374	642	1.44e-20	96.3
Msa0185270	AT3G06920.2	26.355	664	401	9	10	599	35	684	3.36e-76	260
Msa0185270	AT3G06920.2	30.303	462	319	3	135	596	363	821	3.28e-69	241
Msa0185270	AT3G06920.2	28.571	406	285	3	135	540	432	832	1.41e-48	182
Msa0185270	AT3G06920.2	25.786	477	347	5	135	607	82	555	8.48e-47	177
Msa0185270	AT3G06920.2	26.509	381	245	3	93	439	495	874	5.04e-37	148
Msa0185270	AT3G06920.2	26.791	321	233	2	86	406	558	876	4.29e-28	120
Msa0185270	AT3G06920.3	26.355	664	401	9	10	599	35	684	3.36e-76	260
Msa0185270	AT3G06920.3	30.303	462	319	3	135	596	363	821	3.28e-69	241

Showing 1 to 10 of 1,845 entries

Previous1 2 3 4 5…185Next

Find 138 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTTTACTGCTTCTTG+AGG	0.580153	1_4:-75355325	Msa0185270:CDS
AAATTGTGAAAATCTTGGGT+AGG	0.544723	1_4:-75356103	Msa0185270:CDS
AACATTTCCATAGCACGTTT+CGG	0.304598	1_4:+75354910	None:intergenic
AACCATAACCTTCCAATGGA+AGG	0.556352	1_4:-75356473	Msa0185270:CDS
AACCATGAAGAAGCCTCAGA+AGG	0.602790	1_4:+75355435	None:intergenic
AATACTCTCCTTCCTTCCAT+TGG	0.452118	1_4:+75356461	None:intergenic
AATCTTGGGTAGGGTTAAGA+TGG	0.458908	1_4:-75356093	Msa0185270:CDS
AATGAGTATATACTTTAAGT+TGG	0.406232	1_4:-75355781	Msa0185270:CDS
AATGCGGCGGTGCGTCCCAA+CGG	0.567234	1_4:-75355718	Msa0185270:CDS
AATGGCTTGGCTAGGACCGG+TGG	0.626147	1_4:-75354934	Msa0185270:CDS

Showing 1 to 10 of 138 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGCTAGAAAATTGGATGAA+AGG	-	chr1_4:75354778-75354797	Msa0185270:CDS	30.0%
AATTGGATGAAAGGTTCATT+AGG	-	chr1_4:75354787-75354806	Msa0185270:CDS	30.0%
ACATGATTCGACAACTTATA+TGG	-	chr1_4:75354971-75354990	Msa0185270:CDS	30.0%
TACGATGCTTAGATGAAAAT+AGG	-	chr1_4:75355000-75355019	Msa0185270:CDS	30.0%
ATGCTTAGATGAAAATAGGT+TGG	-	chr1_4:75355004-75355023	Msa0185270:CDS	30.0%
ACAATTTCAGACAATTCAGA+AGG	+	chr1_4:75355086-75355105	None:intergenic	30.0%
AAATTGTGAAAATCTTGGGT+AGG	-	chr1_4:75355099-75355118	Msa0185270:CDS	30.0%
AATTGTGAAAATCTTGGGTA+GGG	-	chr1_4:75355100-75355119	Msa0185270:CDS	30.0%
ACCCTTAACCTGATAAAAAA+TGG	+	chr1_4:75355150-75355169	None:intergenic	30.0%
GTATAATGAAATGTGTAGTG+AGG	-	chr1_4:75355256-75355275	Msa0185270:CDS	30.0%

Showing 1 to 10 of 330 entries

Previous1 2 3 4 5…33Next

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	75354699	75356525	75354699	ID=Msa0185270;Name=Msa0185270
chr1_4	mRNA	75354699	75356525	75354699	ID=Msa0185270-mRNA-1;Parent=Msa0185270;Name=Msa0185270-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|608
chr1_4	exon	75354699	75356525	75354699	ID=Msa0185270-mRNA-1:exon:25680;Parent=Msa0185270-mRNA-1
chr1_4	CDS	75354699	75356525	75354699	ID=Msa0185270-mRNA-1:cds;Parent=Msa0185270-mRNA-1

Gene Sequence

>Msa0185270

ATGTTTCGGTTGCCTGATTCCCAAGAAGAAAACCATAACCTTCCAATGGAAGGAAGGAGAGTATTGAGGAAGGATCCAAATGCTAGAAAATTGGATGAAAGGTTCATTAGGATTTTGAAAATATTTAAATGGGGGCCTGATGCAGAAAAGGCTTTGGAAGTATTGAAGCTTAAGCTTGATATTCGCTTAGTTCGCGAAGTTTTGAAGATAGATGTTGAGGTCCATGTGAAGATTCAGTTTTTTAAGTGGGCTGGGAAGAAAAGGAATTTTGAACATGATTCGACAACTTATATGGCTTTGATACGATGCTTAGATGAAAATAGGTTGGTTGGTGAACTGTGGAGGACAATACAAGACATGGTTAAGAGTCCATGTGCGATTGGTCCTTCTGAATTGTCTGAAATTGTGAAAATCTTGGGTAGGGTTAAGATGGTTAACAAGGCATTATCCATTTTTTATCAGGTTAAGGGTCGCAAGTGCAGACCTACAGCAGGCACTTACAACTCTGTCATCTTGATGTTGATGCAAGAGGGGCATCATGAAAAAGTTCATGAGTTGTATAATGAAATGTGTAGTGAGGGACATTGTTTCCCTGATACAGTTACATATAGTGCACTTATATCAGCGTTTGGAAAACTAAATCGCGATGATTCTGCCGTCAGATTATTTAATGAGATGAAGGAGAATGGATTACAGCCAACAGCAAAAATTTATACAACTTTAATGAGTATATACTTTAAGTTGGGTAAGGTTGAGGAAGCGTTGAACCTGGTCCACGAGATGAGAATGCGGCGGTGCGTCCCAACGGTCTATACTTATACAGAATTGATAAGGGGATTGGGGAAATCCGGGAGGGTTGAAGACGCATGCGGAGTATACAAGAATATGCTGAAAGATGGTTGCAAACCAGATGTTGTCCTCATGAATAATTTGATTAACATTTTGGGTAGATCAGATCGCTTAAAAGAGGCTGTTGAGCTTTTTGAGGAAATGAATTTGCTTAATTGCACACCTAATGTTGTGACATACAACACCATTATCAAATCTCTATTTGAGGCTAAAGCCCCACCTTCTGAGGCTTCTTCATGGTTAGAGAGAATGAAAAAAGATGGAGTAGTTCCCAGCTCATTTACATATTCAATTCTCATCGATGGTTTCTGCAAAACAAATCGGGTTGAAAAGGCTTTACTGCTTCTTGAGGAGATGGATGAAAAAGGCTTTCCGCCTTGTCCTGCTGCCTACTGCAGCCTGATCAATAGCCTCGGTAAAGCAAAACGTTATGAGGCTGCAAATGAGCTGTTCCAAGAATTGAAAGAGAACTGTGGAAGTTCGAGCGCGCGTGTATATGCTGTCATGATTAAACATTTTGGAAAATGTGGACGATTCAATGAAGCTATGGGTCTTTTCAACGAGATGAAAAAACTTGGATGCATCCCCGATGTTTATGCTTATAATGCTCTCATGACCGGGATGGTAAGGGAAGACATGATGGATGAAGCTTTTTCTTTGTTTCGAACTATGGAAGAAAATGGTTGCAACCCAGATATAAATTCACATAACATCATACTAAATGGCTTGGCTAGGACCGGTGGCCCGAAACGTGCTATGGAAATGTTCGCGAAAATGAAGAGTTCTGCTATCAAGCCAGATGCGGTTTCTTACAACACAGTTCTTGGCTGCCTTAGTCGTGCAGGACTATTTGAAGAGGCTACTAAGCTTATGAAGGAAATGAGTTCAAAGGGATTCGAGTATGATCTAATCACCTACTCTTCAATTCTCGAGGCAGTTGGTAAGGTTGATGAAGATCGTAATATGGCAGAGTCATGA

Protein sequence

>Msa0185270

MFRLPDSQEENHNLPMEGRRVLRKDPNARKLDERFIRILKIFKWGPDAEKALEVLKLKLDIRLVREVLKIDVEVHVKIQFFKWAGKKRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFNEMKENGLQPTAKIYTTLMSIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDACGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMNLLNCTPNVVTYNTIIKSLFEAKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSARVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALMTGMVREDMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSAIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMSSKGFEYDLITYSSILEAVGKVDEDRNMAES*