AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0188620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188620 MtrunA17_Chr2g0277071 93.789 161 3 1 1 154 1 161 1.05e-108 306
Msa0188620 MtrunA17_Chr2g0281541 45.714 105 48 2 47 148 53 151 4.00e-24 92.0
Msa0188620 MtrunA17_Chr4g0047901 45.833 120 46 5 38 149 25 133 3.47e-23 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188620 AT1G09812.1 46.715 137 59 3 8 144 3 125 1.44e-29 105
Msa0188620 AT1G58007.4 48.571 105 44 3 42 146 20 114 1.64e-23 89.4
Msa0188620 AT1G58007.3 48.571 105 44 3 42 146 20 114 1.64e-23 89.4
Msa0188620 AT1G58007.2 48.571 105 44 3 42 146 20 114 1.64e-23 89.4
Msa0188620 AT1G11120.2 46.341 123 58 4 32 147 24 145 2.07e-22 87.8
Msa0188620 AT1G11120.1 39.597 149 58 5 31 147 23 171 2.27e-19 80.5
Msa0188620 AT4G28170.1 36.207 116 52 6 23 133 37 135 8.94e-12 59.7
Msa0188620 AT1G58007.1 81.250 32 6 0 42 73 20 51 1.78e-11 56.6

Find 68 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTATTCATGTGACTTAA+AGG 0.213889 2_1:+3828445 Msa0188620:five_prime_UTR
AAAAGTGACACTCATATTTA+AGG 0.221587 2_1:-3828513 None:intergenic
TAAAGAGACTAAGAGATTAT+TGG 0.226828 2_1:+3829594 Msa0188620:three_prime_UTR
GATTTCAATGTTTCTAATAA+TGG 0.253747 2_1:+3829160 Msa0188620:CDS
TTTGAACAAATGTTCAAATA+TGG 0.259962 2_1:-3829183 None:intergenic
GTCCAAGGGAAGAAGCTTAT+TGG 0.267181 2_1:+3829477 Msa0188620:CDS
GTGTGAAGCATTTAAGAAAT+TGG 0.309557 2_1:+3828769 Msa0188620:five_prime_UTR
TAGAAACATTGAAATCAAAA+TGG 0.315037 2_1:-3829153 None:intergenic
AAAGAGACTAAGAGATTATT+GGG 0.315819 2_1:+3829595 Msa0188620:three_prime_UTR
ATCTATGCTTCCAACTTATC+AGG 0.349676 2_1:+3829235 Msa0188620:CDS
TCTATGAGTGCAATATCATT+TGG 0.374376 2_1:+3829116 Msa0188620:CDS
GAAGGTCCATGGAAAAGCTT+TGG 0.389743 2_1:+3829089 Msa0188620:CDS
CATCATTTACTCATTGACTT+TGG 0.395198 2_1:-3829667 None:intergenic
GGCCAATAAGCTTCTTCCCT+TGG 0.399066 2_1:-3829479 None:intergenic
GTCTTATGCATGTGATTTGT+CGG 0.403359 2_1:+3829397 Msa0188620:CDS
ATTCATGTGACTTAAAGGTT+TGG 0.410583 2_1:+3828450 Msa0188620:five_prime_UTR
ATGTAAGCCATGTTTCCATT+TGG 0.438502 2_1:+3829637 Msa0188620:three_prime_UTR
TGATTTGTCGGTGTTGATGC+CGG 0.444835 2_1:+3829409 Msa0188620:CDS
TGTTAAATACAAAATGTTGT+TGG 0.457080 2_1:-3829508 None:intergenic
CTTGGACAAGGCAGAGGAGC+AGG 0.461138 2_1:-3829461 None:intergenic
ACAAGGCAGAGGAGCAGGTT+GGG 0.462248 2_1:-3829456 None:intergenic
GTAATAGGAATAGGAGTGGT+TGG 0.462562 2_1:+3828392 None:intergenic
GATTTGTCGGTGTTGATGCC+GGG 0.464814 2_1:+3829410 Msa0188620:CDS
AATTAGAACAAAGACAAAAC+AGG 0.469285 2_1:+3828949 Msa0188620:five_prime_UTR
TCAAGAAAACGTAATATGTC+AGG 0.477996 2_1:-3829777 None:intergenic
TCTTCCCTTGGACAAGGCAG+AGG 0.486050 2_1:-3829467 None:intergenic
AAGGTCCATGGAAAAGCTTT+GGG 0.488752 2_1:+3829090 Msa0188620:CDS
TAAGTTGGAAGCATAGATTC+TGG 0.501581 2_1:-3829230 None:intergenic
AGGAGGAGGAGGAGTTGATG+AGG 0.501669 2_1:+3829067 Msa0188620:CDS
CTGCTCCTCTGCCTTGTCCA+AGG 0.512022 2_1:+3829462 Msa0188620:CDS
CCTCCTGTCTGTGAATGTGA+TGG 0.513542 2_1:-3829050 None:intergenic
GACTTTGGAGAACAGCCAAA+TGG 0.513956 2_1:-3829652 None:intergenic
GATTTCATCTCATGTAGTCT+AGG 0.515564 2_1:-3828487 None:intergenic
ACAAAATGTTGTTGGTGAGA+AGG 0.517710 2_1:-3829500 None:intergenic
TTCTGCCTCTTGAGACAGCA+AGG 0.520372 2_1:+3828575 Msa0188620:five_prime_UTR
TGTGAGATCAGAATGAAGTT+TGG 0.528238 2_1:-3828796 None:intergenic
TGCTCCTCTGCCTTGTCCAA+GGG 0.530867 2_1:+3829463 Msa0188620:CDS
TAAGTAGGATATTGCTGCCC+CGG 0.537196 2_1:-3829428 None:intergenic
GACAAGGCAGAGGAGCAGGT+TGG 0.540635 2_1:-3829457 None:intergenic
GTATACACGGCTTCAAACGC+AGG 0.541704 2_1:+3829026 Msa0188620:CDS
AAGTCTTAACACTAAAATGA+AGG 0.550501 2_1:-3829752 None:intergenic
GAGTTGATGAGGAAGGTCCA+TGG 0.553113 2_1:+3829078 Msa0188620:CDS
GTGACACTCATATTTAAGGA+TGG 0.554314 2_1:-3828509 None:intergenic
CATTGAAATCAAAATGGCTG+TGG 0.558224 2_1:-3829147 None:intergenic
CATTCACAGACAGGAGGAGG+AGG 0.558241 2_1:+3829056 Msa0188620:CDS
GAGTGGTGTTCCTGATAAGT+TGG 0.558569 2_1:-3829245 None:intergenic
GCAGGTTGGGCAATGTAAGT+AGG 0.571068 2_1:-3829443 None:intergenic
ACATGAATAGTGTGCCTTGT+GGG 0.572826 2_1:-3828435 None:intergenic
TAAGTTTGCTTCATCTGACA+AGG 0.587342 2_1:+3828621 Msa0188620:five_prime_UTR
GGTCCATCACATTCACAGAC+AGG 0.587985 2_1:+3829047 Msa0188620:CDS
TCACATTCACAGACAGGAGG+AGG 0.591315 2_1:+3829053 Msa0188620:CDS
ATGGGCCTTGCTGTCTCAAG+AGG 0.592353 2_1:-3828580 None:intergenic
GGAGGAGGAGTTGATGAGGA+AGG 0.605051 2_1:+3829071 Msa0188620:CDS
TAAGCTTCTTCCCTTGGACA+AGG 0.606151 2_1:-3829473 None:intergenic
TCACTACCAACCACAAAACA+AGG 0.611869 2_1:+3829266 Msa0188620:CDS
AGTCAATGAGTAAATGATGA+CGG 0.613545 2_1:+3829671 Msa0188620:three_prime_UTR
GTGGAAGAAAAGTGTTGTGT+GGG 0.618638 2_1:-3829206 None:intergenic
AGAACAGCCAAATGGAAACA+TGG 0.620971 2_1:-3829644 None:intergenic
TTGCTTGCACTTGTCCCACA+AGG 0.622885 2_1:+3828421 Msa0188620:five_prime_UTR
TTATAAAGCTTAGCTAACTG+TGG 0.627301 2_1:+3828732 Msa0188620:intron
ACAGTGAAAGATCAAAGATG+TGG 0.629582 2_1:+3829000 Msa0188620:CDS
CGTGGAAGAAAAGTGTTGTG+TGG 0.639502 2_1:-3829207 None:intergenic
ATTTGTCGGTGTTGATGCCG+GGG 0.648111 2_1:+3829411 Msa0188620:CDS
AAAGATGTGGAACGTATACA+CGG 0.657288 2_1:+3829013 Msa0188620:CDS
TAATGTAATAGGAATAGGAG+TGG 0.674683 2_1:+3828388 None:intergenic
CACATGAATAGTGTGCCTTG+TGG 0.676976 2_1:-3828436 None:intergenic
TGGAAGCATAGATTCTGGCG+TGG 0.678051 2_1:-3829225 None:intergenic
CCATCACATTCACAGACAGG+AGG 0.694212 2_1:+3829050 Msa0188620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAATAAAAAAGAATAAT+GGG - chr2_1:3828601-3828620 None:intergenic 10.0%
!! AAAGAAATAAAAAAGAATAA+TGG - chr2_1:3828602-3828621 None:intergenic 10.0%
!! AAGAAATAAAAAAGAATAAT+GGG - chr2_1:3828601-3828620 None:intergenic 10.0%
!! AAAGAAATAAAAAAGAATAA+TGG - chr2_1:3828602-3828621 None:intergenic 10.0%
!!! CATCATACTTTTTTTTTTAT+TGG + chr2_1:3828709-3828728 Msa0188620:intron 15.0%
!! ATATATTCTCAAAACATTTA+AGG + chr2_1:3828855-3828874 Msa0188620:intron 15.0%
!! CATTATACATATGTTAAAAA+AGG - chr2_1:3829343-3829362 None:intergenic 15.0%
!! GTATGTTTATTTATTATTAC+AGG + chr2_1:3829364-3829383 Msa0188620:intron 15.0%
!!! CATCATACTTTTTTTTTTAT+TGG + chr2_1:3828709-3828728 Msa0188620:intron 15.0%
!! ATATATTCTCAAAACATTTA+AGG + chr2_1:3828855-3828874 Msa0188620:intron 15.0%
!! CATTATACATATGTTAAAAA+AGG - chr2_1:3829343-3829362 None:intergenic 15.0%
!! GTATGTTTATTTATTATTAC+AGG + chr2_1:3829364-3829383 Msa0188620:intron 15.0%
!! TAGAAACATTGAAATCAAAA+TGG - chr2_1:3829156-3829175 None:intergenic 20.0%
!!! GATTTCAATGTTTCTAATAA+TGG + chr2_1:3829160-3829179 Msa0188620:CDS 20.0%
!! TTTGAACAAATGTTCAAATA+TGG - chr2_1:3829186-3829205 None:intergenic 20.0%
!! TGTTAAATACAAAATGTTGT+TGG - chr2_1:3829511-3829530 None:intergenic 20.0%
!!! ATTTTGTATTTAACAACTAG+TGG + chr2_1:3829516-3829535 Msa0188620:CDS 20.0%
!!! ATCGATTAATAACATTTTGT+AGG - chr2_1:3829557-3829576 None:intergenic 20.0%
!! TAGAAACATTGAAATCAAAA+TGG - chr2_1:3829156-3829175 None:intergenic 20.0%
!!! GATTTCAATGTTTCTAATAA+TGG + chr2_1:3829160-3829179 Msa0188620:CDS 20.0%
!! TTTGAACAAATGTTCAAATA+TGG - chr2_1:3829186-3829205 None:intergenic 20.0%
!! TGTTAAATACAAAATGTTGT+TGG - chr2_1:3829511-3829530 None:intergenic 20.0%
!!! ATTTTGTATTTAACAACTAG+TGG + chr2_1:3829516-3829535 Msa0188620:CDS 20.0%
!!! ATCGATTAATAACATTTTGT+AGG - chr2_1:3829557-3829576 None:intergenic 20.0%
! AAAAGTGACACTCATATTTA+AGG - chr2_1:3828516-3828535 None:intergenic 25.0%
! AATTAGAACAAAGACAAAAC+AGG + chr2_1:3828949-3828968 Msa0188620:five_prime_UTR 25.0%
! TAAAGAGACTAAGAGATTAT+TGG + chr2_1:3829594-3829613 Msa0188620:three_prime_UTR 25.0%
! AAAGAGACTAAGAGATTATT+GGG + chr2_1:3829595-3829614 Msa0188620:three_prime_UTR 25.0%
! AAGTCTTAACACTAAAATGA+AGG - chr2_1:3829755-3829774 None:intergenic 25.0%
! AAAAGTGACACTCATATTTA+AGG - chr2_1:3828516-3828535 None:intergenic 25.0%
! AATTAGAACAAAGACAAAAC+AGG + chr2_1:3828949-3828968 Msa0188620:five_prime_UTR 25.0%
! TAAAGAGACTAAGAGATTAT+TGG + chr2_1:3829594-3829613 Msa0188620:three_prime_UTR 25.0%
! AAAGAGACTAAGAGATTATT+GGG + chr2_1:3829595-3829614 Msa0188620:three_prime_UTR 25.0%
! AAGTCTTAACACTAAAATGA+AGG - chr2_1:3829755-3829774 None:intergenic 25.0%
ACACTATTCATGTGACTTAA+AGG + chr2_1:3828445-3828464 Msa0188620:five_prime_UTR 30.0%
ATTCATGTGACTTAAAGGTT+TGG + chr2_1:3828450-3828469 Msa0188620:five_prime_UTR 30.0%
ATTAAGTTAAGCATCAGTTG+AGG + chr2_1:3828667-3828686 Msa0188620:intron 30.0%
TTATAAAGCTTAGCTAACTG+TGG + chr2_1:3828732-3828751 Msa0188620:intron 30.0%
! GTGTGAAGCATTTAAGAAAT+TGG + chr2_1:3828769-3828788 Msa0188620:five_prime_UTR 30.0%
AAGAATCAGACAGAATAACT+AGG - chr2_1:3828903-3828922 None:intergenic 30.0%
TCTATGAGTGCAATATCATT+TGG + chr2_1:3829116-3829135 Msa0188620:CDS 30.0%
ACATGAAACAGGTAGTAAAA+GGG - chr2_1:3829311-3829330 None:intergenic 30.0%
GGAAAAAAAACACATGAAAC+AGG - chr2_1:3829322-3829341 None:intergenic 30.0%
!! CATCATTTACTCATTGACTT+TGG - chr2_1:3829670-3829689 None:intergenic 30.0%
AGTCAATGAGTAAATGATGA+CGG + chr2_1:3829671-3829690 Msa0188620:three_prime_UTR 30.0%
ACACTATTCATGTGACTTAA+AGG + chr2_1:3828445-3828464 Msa0188620:five_prime_UTR 30.0%
ATTCATGTGACTTAAAGGTT+TGG + chr2_1:3828450-3828469 Msa0188620:five_prime_UTR 30.0%
ATTAAGTTAAGCATCAGTTG+AGG + chr2_1:3828667-3828686 Msa0188620:intron 30.0%
TTATAAAGCTTAGCTAACTG+TGG + chr2_1:3828732-3828751 Msa0188620:intron 30.0%
! GTGTGAAGCATTTAAGAAAT+TGG + chr2_1:3828769-3828788 Msa0188620:five_prime_UTR 30.0%
AAGAATCAGACAGAATAACT+AGG - chr2_1:3828903-3828922 None:intergenic 30.0%
TCTATGAGTGCAATATCATT+TGG + chr2_1:3829116-3829135 Msa0188620:CDS 30.0%
ACATGAAACAGGTAGTAAAA+GGG - chr2_1:3829311-3829330 None:intergenic 30.0%
GGAAAAAAAACACATGAAAC+AGG - chr2_1:3829322-3829341 None:intergenic 30.0%
!! CATCATTTACTCATTGACTT+TGG - chr2_1:3829670-3829689 None:intergenic 30.0%
AGTCAATGAGTAAATGATGA+CGG + chr2_1:3829671-3829690 Msa0188620:three_prime_UTR 30.0%
GATTTCATCTCATGTAGTCT+AGG - chr2_1:3828490-3828509 None:intergenic 35.0%
GTGACACTCATATTTAAGGA+TGG - chr2_1:3828512-3828531 None:intergenic 35.0%
! TAAGTTTGCTTCATCTGACA+AGG + chr2_1:3828621-3828640 Msa0188620:five_prime_UTR 35.0%
TGTGAGATCAGAATGAAGTT+TGG - chr2_1:3828799-3828818 None:intergenic 35.0%
ACAGTGAAAGATCAAAGATG+TGG + chr2_1:3829000-3829019 Msa0188620:CDS 35.0%
AAAGATGTGGAACGTATACA+CGG + chr2_1:3829013-3829032 Msa0188620:CDS 35.0%
CATTGAAATCAAAATGGCTG+TGG - chr2_1:3829150-3829169 None:intergenic 35.0%
! TAAGTTGGAAGCATAGATTC+TGG - chr2_1:3829233-3829252 None:intergenic 35.0%
ATCTATGCTTCCAACTTATC+AGG + chr2_1:3829235-3829254 Msa0188620:CDS 35.0%
!!! TTGTGCATTTCCTTGTTTTG+TGG - chr2_1:3829279-3829298 None:intergenic 35.0%
CACATGAAACAGGTAGTAAA+AGG - chr2_1:3829312-3829331 None:intergenic 35.0%
! GTCTTATGCATGTGATTTGT+CGG + chr2_1:3829397-3829416 Msa0188620:CDS 35.0%
! ACAAAATGTTGTTGGTGAGA+AGG - chr2_1:3829503-3829522 None:intergenic 35.0%
ATGTAAGCCATGTTTCCATT+TGG + chr2_1:3829637-3829656 Msa0188620:three_prime_UTR 35.0%
GATTTCATCTCATGTAGTCT+AGG - chr2_1:3828490-3828509 None:intergenic 35.0%
GTGACACTCATATTTAAGGA+TGG - chr2_1:3828512-3828531 None:intergenic 35.0%
! TAAGTTTGCTTCATCTGACA+AGG + chr2_1:3828621-3828640 Msa0188620:five_prime_UTR 35.0%
TGTGAGATCAGAATGAAGTT+TGG - chr2_1:3828799-3828818 None:intergenic 35.0%
ACAGTGAAAGATCAAAGATG+TGG + chr2_1:3829000-3829019 Msa0188620:CDS 35.0%
AAAGATGTGGAACGTATACA+CGG + chr2_1:3829013-3829032 Msa0188620:CDS 35.0%
CATTGAAATCAAAATGGCTG+TGG - chr2_1:3829150-3829169 None:intergenic 35.0%
! TAAGTTGGAAGCATAGATTC+TGG - chr2_1:3829233-3829252 None:intergenic 35.0%
ATCTATGCTTCCAACTTATC+AGG + chr2_1:3829235-3829254 Msa0188620:CDS 35.0%
!!! TTGTGCATTTCCTTGTTTTG+TGG - chr2_1:3829279-3829298 None:intergenic 35.0%
CACATGAAACAGGTAGTAAA+AGG - chr2_1:3829312-3829331 None:intergenic 35.0%
! GTCTTATGCATGTGATTTGT+CGG + chr2_1:3829397-3829416 Msa0188620:CDS 35.0%
! ACAAAATGTTGTTGGTGAGA+AGG - chr2_1:3829503-3829522 None:intergenic 35.0%
ATGTAAGCCATGTTTCCATT+TGG + chr2_1:3829637-3829656 Msa0188620:three_prime_UTR 35.0%
ACATGAATAGTGTGCCTTGT+GGG - chr2_1:3828438-3828457 None:intergenic 40.0%
! CATTTAAGGCTCGTCTAACT+TGG + chr2_1:3828869-3828888 Msa0188620:intron 40.0%
AAGGTCCATGGAAAAGCTTT+GGG + chr2_1:3829090-3829109 Msa0188620:CDS 40.0%
!! GTGGAAGAAAAGTGTTGTGT+GGG - chr2_1:3829209-3829228 None:intergenic 40.0%
TCACTACCAACCACAAAACA+AGG + chr2_1:3829266-3829285 Msa0188620:CDS 40.0%
!!! GCATTTCCTTGTTTTGTGGT+TGG - chr2_1:3829275-3829294 None:intergenic 40.0%
AGAACAGCCAAATGGAAACA+TGG - chr2_1:3829647-3829666 None:intergenic 40.0%
ACATGAATAGTGTGCCTTGT+GGG - chr2_1:3828438-3828457 None:intergenic 40.0%
! CATTTAAGGCTCGTCTAACT+TGG + chr2_1:3828869-3828888 Msa0188620:intron 40.0%
AAGGTCCATGGAAAAGCTTT+GGG + chr2_1:3829090-3829109 Msa0188620:CDS 40.0%
!! GTGGAAGAAAAGTGTTGTGT+GGG - chr2_1:3829209-3829228 None:intergenic 40.0%
TCACTACCAACCACAAAACA+AGG + chr2_1:3829266-3829285 Msa0188620:CDS 40.0%
!!! GCATTTCCTTGTTTTGTGGT+TGG - chr2_1:3829275-3829294 None:intergenic 40.0%
AGAACAGCCAAATGGAAACA+TGG - chr2_1:3829647-3829666 None:intergenic 40.0%
CACATGAATAGTGTGCCTTG+TGG - chr2_1:3828439-3828458 None:intergenic 45.0%
GAAGGTCCATGGAAAAGCTT+TGG + chr2_1:3829089-3829108 Msa0188620:CDS 45.0%
! GAAGTCCCAAAGCTTTTCCA+TGG - chr2_1:3829098-3829117 None:intergenic 45.0%
!! CGTGGAAGAAAAGTGTTGTG+TGG - chr2_1:3829210-3829229 None:intergenic 45.0%
GAGTGGTGTTCCTGATAAGT+TGG - chr2_1:3829248-3829267 None:intergenic 45.0%
!!! GTTTTGTGGTTGGTAGTGAG+TGG - chr2_1:3829265-3829284 None:intergenic 45.0%
!! TGATTTGTCGGTGTTGATGC+CGG + chr2_1:3829409-3829428 Msa0188620:CDS 45.0%
TAAGTAGGATATTGCTGCCC+CGG - chr2_1:3829431-3829450 None:intergenic 45.0%
TAAGCTTCTTCCCTTGGACA+AGG - chr2_1:3829476-3829495 None:intergenic 45.0%
GTCCAAGGGAAGAAGCTTAT+TGG + chr2_1:3829477-3829496 Msa0188620:CDS 45.0%
! GACTTTGGAGAACAGCCAAA+TGG - chr2_1:3829655-3829674 None:intergenic 45.0%
CACATGAATAGTGTGCCTTG+TGG - chr2_1:3828439-3828458 None:intergenic 45.0%
GAAGGTCCATGGAAAAGCTT+TGG + chr2_1:3829089-3829108 Msa0188620:CDS 45.0%
! GAAGTCCCAAAGCTTTTCCA+TGG - chr2_1:3829098-3829117 None:intergenic 45.0%
!! CGTGGAAGAAAAGTGTTGTG+TGG - chr2_1:3829210-3829229 None:intergenic 45.0%
GAGTGGTGTTCCTGATAAGT+TGG - chr2_1:3829248-3829267 None:intergenic 45.0%
!!! GTTTTGTGGTTGGTAGTGAG+TGG - chr2_1:3829265-3829284 None:intergenic 45.0%
!! TGATTTGTCGGTGTTGATGC+CGG + chr2_1:3829409-3829428 Msa0188620:CDS 45.0%
TAAGTAGGATATTGCTGCCC+CGG - chr2_1:3829431-3829450 None:intergenic 45.0%
TAAGCTTCTTCCCTTGGACA+AGG - chr2_1:3829476-3829495 None:intergenic 45.0%
GTCCAAGGGAAGAAGCTTAT+TGG + chr2_1:3829477-3829496 Msa0188620:CDS 45.0%
! GACTTTGGAGAACAGCCAAA+TGG - chr2_1:3829655-3829674 None:intergenic 45.0%
TTGCTTGCACTTGTCCCACA+AGG + chr2_1:3828421-3828440 Msa0188620:five_prime_UTR 50.0%
TTCTGCCTCTTGAGACAGCA+AGG + chr2_1:3828575-3828594 Msa0188620:five_prime_UTR 50.0%
GTATACACGGCTTCAAACGC+AGG + chr2_1:3829026-3829045 Msa0188620:CDS 50.0%
GGTCCATCACATTCACAGAC+AGG + chr2_1:3829047-3829066 Msa0188620:CDS 50.0%
CCTCCTGTCTGTGAATGTGA+TGG - chr2_1:3829053-3829072 None:intergenic 50.0%
CCATCACATTCACAGACAGG+AGG + chr2_1:3829050-3829069 Msa0188620:CDS 50.0%
TCACATTCACAGACAGGAGG+AGG + chr2_1:3829053-3829072 Msa0188620:CDS 50.0%
!! GAGTTGATGAGGAAGGTCCA+TGG + chr2_1:3829078-3829097 Msa0188620:CDS 50.0%
! TGGAAGCATAGATTCTGGCG+TGG - chr2_1:3829228-3829247 None:intergenic 50.0%
!! GATTTGTCGGTGTTGATGCC+GGG + chr2_1:3829410-3829429 Msa0188620:CDS 50.0%
!! ATTTGTCGGTGTTGATGCCG+GGG + chr2_1:3829411-3829430 Msa0188620:CDS 50.0%
! GCAGGTTGGGCAATGTAAGT+AGG - chr2_1:3829446-3829465 None:intergenic 50.0%
GGCCAATAAGCTTCTTCCCT+TGG - chr2_1:3829482-3829501 None:intergenic 50.0%
TTGCTTGCACTTGTCCCACA+AGG + chr2_1:3828421-3828440 Msa0188620:five_prime_UTR 50.0%
TTCTGCCTCTTGAGACAGCA+AGG + chr2_1:3828575-3828594 Msa0188620:five_prime_UTR 50.0%
GTATACACGGCTTCAAACGC+AGG + chr2_1:3829026-3829045 Msa0188620:CDS 50.0%
GGTCCATCACATTCACAGAC+AGG + chr2_1:3829047-3829066 Msa0188620:CDS 50.0%
CCTCCTGTCTGTGAATGTGA+TGG - chr2_1:3829053-3829072 None:intergenic 50.0%
CCATCACATTCACAGACAGG+AGG + chr2_1:3829050-3829069 Msa0188620:CDS 50.0%
TCACATTCACAGACAGGAGG+AGG + chr2_1:3829053-3829072 Msa0188620:CDS 50.0%
!! GAGTTGATGAGGAAGGTCCA+TGG + chr2_1:3829078-3829097 Msa0188620:CDS 50.0%
! TGGAAGCATAGATTCTGGCG+TGG - chr2_1:3829228-3829247 None:intergenic 50.0%
!! GATTTGTCGGTGTTGATGCC+GGG + chr2_1:3829410-3829429 Msa0188620:CDS 50.0%
!! ATTTGTCGGTGTTGATGCCG+GGG + chr2_1:3829411-3829430 Msa0188620:CDS 50.0%
! GCAGGTTGGGCAATGTAAGT+AGG - chr2_1:3829446-3829465 None:intergenic 50.0%
GGCCAATAAGCTTCTTCCCT+TGG - chr2_1:3829482-3829501 None:intergenic 50.0%
! ATGGGCCTTGCTGTCTCAAG+AGG - chr2_1:3828583-3828602 None:intergenic 55.0%
CATTCACAGACAGGAGGAGG+AGG + chr2_1:3829056-3829075 Msa0188620:CDS 55.0%
!! AGGAGGAGGAGGAGTTGATG+AGG + chr2_1:3829067-3829086 Msa0188620:CDS 55.0%
!! GGAGGAGGAGTTGATGAGGA+AGG + chr2_1:3829071-3829090 Msa0188620:CDS 55.0%
ACAAGGCAGAGGAGCAGGTT+GGG - chr2_1:3829459-3829478 None:intergenic 55.0%
TGCTCCTCTGCCTTGTCCAA+GGG + chr2_1:3829463-3829482 Msa0188620:CDS 55.0%
TCTTCCCTTGGACAAGGCAG+AGG - chr2_1:3829470-3829489 None:intergenic 55.0%
! ATGGGCCTTGCTGTCTCAAG+AGG - chr2_1:3828583-3828602 None:intergenic 55.0%
CATTCACAGACAGGAGGAGG+AGG + chr2_1:3829056-3829075 Msa0188620:CDS 55.0%
!! AGGAGGAGGAGGAGTTGATG+AGG + chr2_1:3829067-3829086 Msa0188620:CDS 55.0%
!! GGAGGAGGAGTTGATGAGGA+AGG + chr2_1:3829071-3829090 Msa0188620:CDS 55.0%
ACAAGGCAGAGGAGCAGGTT+GGG - chr2_1:3829459-3829478 None:intergenic 55.0%
TGCTCCTCTGCCTTGTCCAA+GGG + chr2_1:3829463-3829482 Msa0188620:CDS 55.0%
TCTTCCCTTGGACAAGGCAG+AGG - chr2_1:3829470-3829489 None:intergenic 55.0%
GACAAGGCAGAGGAGCAGGT+TGG - chr2_1:3829460-3829479 None:intergenic 60.0%
CTTGGACAAGGCAGAGGAGC+AGG - chr2_1:3829464-3829483 None:intergenic 60.0%
CTGCTCCTCTGCCTTGTCCA+AGG + chr2_1:3829462-3829481 Msa0188620:CDS 60.0%
GACAAGGCAGAGGAGCAGGT+TGG - chr2_1:3829460-3829479 None:intergenic 60.0%
CTTGGACAAGGCAGAGGAGC+AGG - chr2_1:3829464-3829483 None:intergenic 60.0%
CTGCTCCTCTGCCTTGTCCA+AGG + chr2_1:3829462-3829481 Msa0188620:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 3828401 3829795 3828401 ID=Msa0188620;Name=Msa0188620
chr2_1 mRNA 3828401 3829795 3828401 ID=Msa0188620-mRNA-1;Parent=Msa0188620;Name=Msa0188620-mRNA-1;_AED=0.10;_eAED=0.10;_QI=382|1|1|1|0.33|0.25|4|260|154
chr2_1 exon 3828401 3828642 3828401 ID=Msa0188620-mRNA-1:exon:1609;Parent=Msa0188620-mRNA-1
chr2_1 exon 3828740 3828841 3828740 ID=Msa0188620-mRNA-1:exon:1610;Parent=Msa0188620-mRNA-1
chr2_1 exon 3828949 3829301 3828949 ID=Msa0188620-mRNA-1:exon:1611;Parent=Msa0188620-mRNA-1
chr2_1 exon 3829386 3829795 3829386 ID=Msa0188620-mRNA-1:exon:1612;Parent=Msa0188620-mRNA-1
chr2_1 five_prime_UTR 3828401 3828642 3828401 ID=Msa0188620-mRNA-1:five_prime_utr;Parent=Msa0188620-mRNA-1
chr2_1 five_prime_UTR 3828740 3828841 3828740 ID=Msa0188620-mRNA-1:five_prime_utr;Parent=Msa0188620-mRNA-1
chr2_1 five_prime_UTR 3828949 3828986 3828949 ID=Msa0188620-mRNA-1:five_prime_utr;Parent=Msa0188620-mRNA-1
chr2_1 CDS 3828987 3829301 3828987 ID=Msa0188620-mRNA-1:cds;Parent=Msa0188620-mRNA-1
chr2_1 CDS 3829386 3829535 3829386 ID=Msa0188620-mRNA-1:cds;Parent=Msa0188620-mRNA-1
chr2_1 three_prime_UTR 3829536 3829795 3829536 ID=Msa0188620-mRNA-1:three_prime_utr;Parent=Msa0188620-mRNA-1
Gene Sequence

>Msa0188620

ATGAGCGATTTAAACAGTGAAAGATCAAAGATGTGGAACGTATACACGGCTTCAAACGCAGGTCCATCACATTCACAGACAGGAGGAGGAGGAGTTGATGAGGAAGGTCCATGGAAAAGCTTTGGGACTTCTATGAGTGCAATATCATTTGGTTTTGTTGCCACAGCCATTTTGATTTCAATGTTTCTAATAATGGCCATATTTGAACATTTGTTCAAACCCACACAACACTTTTCTTCCACGCCAGAATCTATGCTTCCAACTTATCAGGAACACCACTCACTACCAACCACAAAACAAGGAAATGCACAATCAGTTCTATCATCGTCTTATGCATGTGATTTGTCGGTGTTGATGCCGGGGCAGCAATATCCTACTTACATTGCCCAACCTGCTCCTCTGCCTTGTCCAAGGGAAGAAGCTTATTGGCCTTCTCACCAACAACATTTTGTATTTAACAACTAG
Protein sequence

>Msa0188620

MSDLNSERSKMWNVYTASNAGPSHSQTGGGGVDEEGPWKSFGTSMSAISFGFVATAILISMFLIMAIFEHLFKPTQHFSSTPESMLPTYQEHHSLPTTKQGNAQSVLSSSYACDLSVLMPGQQYPTYIAQPAPLPCPREEAYWPSHQQHFVFNN*