Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719750 | XP_003612799.2 | 93.137 | 306 | 2 | 1 | 2 | 307 | 118 | 404 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719750 | sp|Q5ZJX1|AB17C_CHICK | 46.939 | 147 | 76 | 2 | 2 | 147 | 158 | 303 | 2.23e-42 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719750 | G7KCB2 | 93.137 | 306 | 2 | 1 | 2 | 307 | 118 | 404 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0719750 | -0.860243 | 2.365604e-63 | -8.615850e-47 |
| Msa0007810 | Msa0719750 | -0.808913 | 2.451866e-50 | -8.615850e-47 |
| Msa0011100 | Msa0719750 | -0.803204 | 3.897840e-49 | -8.615850e-47 |
| Msa0011410 | Msa0719750 | -0.811244 | 7.714514e-51 | -8.615850e-47 |
| Msa0011440 | Msa0719750 | -0.822281 | 2.576497e-53 | -8.615850e-47 |
| Msa0011450 | Msa0719750 | -0.838743 | 2.399004e-57 | -8.615850e-47 |
| Msa0013270 | Msa0719750 | 0.801581 | 8.415810e-49 | -8.615850e-47 |
| Msa0016380 | Msa0719750 | -0.812479 | 4.152116e-51 | -8.615850e-47 |
| Msa0017300 | Msa0719750 | -0.842266 | 2.871247e-58 | -8.615850e-47 |
| Msa0024240 | Msa0719750 | -0.827419 | 1.580923e-54 | -8.615850e-47 |
| Msa0025570 | Msa0719750 | 0.818150 | 2.277585e-52 | -8.615850e-47 |
| Msa0033220 | Msa0719750 | 0.841006 | 6.170575e-58 | -8.615850e-47 |
| Msa0034700 | Msa0719750 | -0.824111 | 9.631654e-54 | -8.615850e-47 |
| Msa0038150 | Msa0719750 | -0.801891 | 7.269835e-49 | -8.615850e-47 |
| Msa0038750 | Msa0719750 | -0.810167 | 1.318488e-50 | -8.615850e-47 |
| Msa0039750 | Msa0719750 | 0.804232 | 2.384548e-49 | -8.615850e-47 |
| Msa0042950 | Msa0719750 | -0.801826 | 7.494750e-49 | -8.615850e-47 |
| Msa0044530 | Msa0719750 | -0.870649 | 1.244473e-66 | -8.615850e-47 |
| Msa0047660 | Msa0719750 | -0.801801 | 7.584816e-49 | -8.615850e-47 |
| Msa0056230 | Msa0719750 | -0.811268 | 7.622558e-51 | -8.615850e-47 |
| Msa0060410 | Msa0719750 | 0.833669 | 4.670397e-56 | -8.615850e-47 |
| Msa0065670 | Msa0719750 | -0.861646 | 8.865865e-64 | -8.615850e-47 |
| Msa0066890 | Msa0719750 | -0.815691 | 8.120195e-52 | -8.615850e-47 |
| Msa0073110 | Msa0719750 | 0.802088 | 6.623831e-49 | -8.615850e-47 |
| Msa0077570 | Msa0719750 | -0.838400 | 2.940565e-57 | -8.615850e-47 |
| Msa0079880 | Msa0719750 | 0.838144 | 3.422900e-57 | -8.615850e-47 |
| Msa0080030 | Msa0719750 | 0.837413 | 5.276268e-57 | -8.615850e-47 |
| Msa0086620 | Msa0719750 | -0.827681 | 1.368190e-54 | -8.615850e-47 |
| Msa0089470 | Msa0719750 | -0.809368 | 1.959081e-50 | -8.615850e-47 |
| Msa0091220 | Msa0719750 | -0.855934 | 4.520707e-62 | -8.615850e-47 |
| Msa0091240 | Msa0719750 | -0.867768 | 1.072709e-65 | -8.615850e-47 |
| Msa0094170 | Msa0719750 | -0.841500 | 4.577656e-58 | -8.615850e-47 |
| Msa0094560 | Msa0719750 | 0.856679 | 2.733355e-62 | -8.615850e-47 |
| Msa0094570 | Msa0719750 | 0.821356 | 4.217385e-53 | -8.615850e-47 |
| Msa0095810 | Msa0719750 | -0.863613 | 2.197360e-64 | -8.615850e-47 |
| Msa0095890 | Msa0719750 | -0.818848 | 1.582062e-52 | -8.615850e-47 |
| Msa0102240 | Msa0719750 | 0.840475 | 8.503058e-58 | -8.615850e-47 |
| Msa0105140 | Msa0719750 | -0.811855 | 5.680843e-51 | -8.615850e-47 |
| Msa0106540 | Msa0719750 | 0.801217 | 9.993896e-49 | -8.615850e-47 |
| Msa0111110 | Msa0719750 | -0.861142 | 1.263187e-63 | -8.615850e-47 |
| Msa0603180 | Msa0719750 | -0.836072 | 1.159283e-56 | -8.615850e-47 |
| Msa0604190 | Msa0719750 | 0.803771 | 2.972897e-49 | -8.615850e-47 |
| Msa0638300 | Msa0719750 | -0.811327 | 7.401561e-51 | -8.615850e-47 |
| Msa0645390 | Msa0719750 | 0.810137 | 1.338386e-50 | -8.615850e-47 |
| Msa0651990 | Msa0719750 | -0.812053 | 5.143985e-51 | -8.615850e-47 |
| Msa0657710 | Msa0719750 | 0.809025 | 2.320566e-50 | -8.615850e-47 |
| Msa0661480 | Msa0719750 | 0.825614 | 4.259232e-54 | -8.615850e-47 |
| Msa0676570 | Msa0719750 | -0.828786 | 7.407388e-55 | -8.615850e-47 |
| Msa0684030 | Msa0719750 | -0.817173 | 3.783130e-52 | -8.615850e-47 |
| Msa0685610 | Msa0719750 | 0.808831 | 2.553071e-50 | -8.615850e-47 |
| Msa0688880 | Msa0719750 | -0.801852 | 7.405740e-49 | -8.615850e-47 |
| Msa0702800 | Msa0719750 | 0.808368 | 3.204669e-50 | -8.615850e-47 |
| Msa0719270 | Msa0719750 | 0.822501 | 2.290582e-53 | -8.615850e-47 |
| Msa0719750 | Msa0726170 | -0.804151 | 2.478768e-49 | -8.615850e-47 |
| Msa0719750 | Msa0733240 | -0.808068 | 3.714394e-50 | -8.615850e-47 |
| Msa0719750 | Msa0736920 | 0.810348 | 1.205486e-50 | -8.615850e-47 |
| Msa0719750 | Msa0741040 | 0.818056 | 2.392372e-52 | -8.615850e-47 |
| Msa0719750 | Msa0742370 | -0.836716 | 7.948196e-57 | -8.615850e-47 |
| Msa0719750 | Msa0750200 | -0.800265 | 1.563036e-48 | -8.615850e-47 |
| Msa0719750 | Msa0753590 | -0.815445 | 9.213424e-52 | -8.615850e-47 |
| Msa0719750 | Msa0778570 | 0.804534 | 2.063170e-49 | -8.615850e-47 |
| Msa0719750 | Msa0779450 | -0.813152 | 2.958576e-51 | -8.615850e-47 |
| Msa0719750 | Msa0786600 | -0.802159 | 6.403536e-49 | -8.615850e-47 |
| Msa0719750 | Msa0790650 | -0.829221 | 5.812678e-55 | -8.615850e-47 |
| Msa0719750 | Msa0795750 | 0.814559 | 1.448572e-51 | -8.615850e-47 |
| Msa0719750 | Msa0795910 | -0.805811 | 1.114720e-49 | -8.615850e-47 |
| Msa0719750 | Msa0800120 | 0.805036 | 1.620101e-49 | -8.615850e-47 |
| Msa0719750 | Msa0802760 | 0.932412 | 8.856368e-95 | -8.615850e-47 |
| Msa0719750 | Msa0812020 | -0.820660 | 6.099917e-53 | -8.615850e-47 |
| Msa0719750 | Msa0821530 | 0.848684 | 5.237676e-60 | -8.615850e-47 |
| Msa0719750 | Msa0822680 | -0.800171 | 1.633591e-48 | -8.615850e-47 |
| Msa0719750 | Msa0823480 | -0.850612 | 1.516891e-60 | -8.615850e-47 |
| Msa0719750 | Msa0828960 | 0.808656 | 2.782923e-50 | -8.615850e-47 |
| Msa0719750 | Msa0829250 | -0.804957 | 1.683105e-49 | -8.615850e-47 |
| Msa0719750 | Msa0833200 | -0.819078 | 1.402650e-52 | -8.615850e-47 |
| Msa0719750 | Msa0833360 | -0.803864 | 2.843571e-49 | -8.615850e-47 |
| Msa0719750 | Msa0840520 | 0.817102 | 3.923620e-52 | -8.615850e-47 |
| Msa0719750 | Msa0841050 | 0.932022 | 1.586767e-94 | -8.615850e-47 |
| Msa0719750 | Msa0852090 | -0.814306 | 1.647461e-51 | -8.615850e-47 |
| Msa0719750 | Msa0853200 | -0.826425 | 2.732589e-54 | -8.615850e-47 |
| Msa0719750 | Msa0862480 | -0.838926 | 2.151033e-57 | -8.615850e-47 |
| Msa0719750 | Msa0903590 | -0.808536 | 2.950891e-50 | -8.615850e-47 |
| Msa0719750 | Msa0910170 | 0.802467 | 5.532420e-49 | -8.615850e-47 |
| Msa0719750 | Msa0964400 | -0.804559 | 2.038063e-49 | -8.615850e-47 |
| Msa0719750 | Msa0973080 | -0.808976 | 2.377067e-50 | -8.615850e-47 |
| Msa0719750 | Msa1002550 | -0.803557 | 3.292984e-49 | -8.615850e-47 |
| Msa0719750 | Msa1015360 | 0.809311 | 2.014222e-50 | -8.615850e-47 |
| Msa0719750 | Msa1022420 | 0.811420 | 7.064070e-51 | -8.615850e-47 |
| Msa0719750 | Msa1039440 | -0.831737 | 1.408568e-55 | -8.615850e-47 |
| Msa0719750 | Msa1041060 | 0.804026 | 2.632366e-49 | -8.615850e-47 |
| Msa0719750 | Msa1042300 | 0.815923 | 7.208566e-52 | -8.615850e-47 |
| Msa0719750 | Msa1044250 | 0.818933 | 1.513722e-52 | -8.615850e-47 |
| Msa0719750 | Msa1078280 | -0.804355 | 2.248143e-49 | -8.615850e-47 |
| Msa0719750 | Msa1086850 | -0.804634 | 1.966501e-49 | -8.615850e-47 |
| Msa0719750 | Msa1101610 | -0.804415 | 2.183971e-49 | -8.615850e-47 |
| Msa0719750 | Msa1106730 | -0.818986 | 1.472059e-52 | -8.615850e-47 |
| Msa0719750 | Msa1123490 | -0.807847 | 4.138897e-50 | -8.615850e-47 |
| Msa0719750 | Msa1128520 | -0.828147 | 1.056817e-54 | -8.615850e-47 |
| Msa0719750 | Msa1129120 | -0.804274 | 2.336586e-49 | -8.615850e-47 |
| Msa0719750 | Msa1130150 | -0.801892 | 7.265492e-49 | -8.615850e-47 |
| Msa0719750 | Msa1132880 | -0.806248 | 9.018757e-50 | -8.615850e-47 |
| Msa0719750 | Msa1149910 | 0.814328 | 1.629569e-51 | -8.615850e-47 |
| Msa0719750 | Msa1154060 | 0.800023 | 1.750247e-48 | -8.615850e-47 |
| Msa0719750 | Msa1154320 | 0.827324 | 1.665809e-54 | -8.615850e-47 |
| Msa0719750 | Msa1184680 | 0.823934 | 1.059925e-53 | -8.615850e-47 |
| Msa0719750 | Msa1191530 | -0.813867 | 2.059325e-51 | -8.615850e-47 |
| Msa0719750 | Msa1199700 | -0.802327 | 5.914005e-49 | -8.615850e-47 |
| Msa0719750 | Msa1212150 | -0.803468 | 3.437060e-49 | -8.615850e-47 |
| Msa0719750 | Msa1221120 | 0.806735 | 7.121121e-50 | -8.615850e-47 |
| Msa0719750 | Msa1221130 | 0.852442 | 4.604523e-61 | -8.615850e-47 |
| Msa0719750 | Msa1223540 | 0.826696 | 2.354801e-54 | -8.615850e-47 |
| Msa0719750 | Msa1223620 | 0.820789 | 5.697787e-53 | -8.615850e-47 |
| Msa0719750 | Msa1255030 | -0.803963 | 2.712611e-49 | -8.615850e-47 |
| Msa0719750 | Msa1263520 | 0.816953 | 4.238480e-52 | -8.615850e-47 |
| Msa0719750 | Msa1265450 | 0.803439 | 3.485055e-49 | -8.615850e-47 |
| Msa0719750 | Msa1265460 | 0.808117 | 3.625455e-50 | -8.615850e-47 |
| Msa0719750 | Msa1266120 | -0.821340 | 4.254347e-53 | -8.615850e-47 |
| Msa0719750 | Msa1268360 | 0.814301 | 1.652095e-51 | -8.615850e-47 |
| Msa0719750 | Msa1268390 | 0.801541 | 8.576351e-49 | -8.615850e-47 |
| Msa0719750 | Msa1273320 | 0.812733 | 3.654444e-51 | -8.615850e-47 |
| Msa0719750 | Msa1279250 | -0.801018 | 1.097487e-48 | -8.615850e-47 |
| Msa0719750 | Msa1286860 | -0.803094 | 4.107872e-49 | -8.615850e-47 |
| Msa0719750 | Msa1287100 | -0.834460 | 2.959311e-56 | -8.615850e-47 |
| Msa0719750 | Msa1295210 | -0.828248 | 9.990300e-55 | -8.615850e-47 |
| Msa0719750 | Msa1295480 | -0.849362 | 3.395961e-60 | -8.615850e-47 |
| Msa0719750 | Msa1331720 | -0.802536 | 5.353889e-49 | -8.615850e-47 |
| Msa0719750 | Msa1338810 | -0.834330 | 3.190657e-56 | -8.615850e-47 |
| Msa0719750 | Msa1343600 | 0.807226 | 5.604459e-50 | -8.615850e-47 |
| Msa0719750 | Msa1348170 | -0.818458 | 1.940014e-52 | -8.615850e-47 |
| Msa0719750 | Msa1352600 | -0.818281 | 2.127496e-52 | -8.615850e-47 |
| Msa0719750 | Msa1366140 | -0.816004 | 6.913274e-52 | -8.615850e-47 |
| Msa0719750 | Msa1386180 | -0.802577 | 5.251176e-49 | -8.615850e-47 |
| Msa0719750 | Msa1386910 | -0.805164 | 1.523236e-49 | -8.615850e-47 |
| Msa0719750 | Msa1387450 | -0.824301 | 8.693227e-54 | -8.615850e-47 |
| Msa0719750 | Msa1388720 | -0.804302 | 2.305639e-49 | -8.615850e-47 |
| Msa0719750 | Msa1396200 | -0.806008 | 1.013164e-49 | -8.615850e-47 |
| Msa0719750 | Msa1401300 | 0.862923 | 3.591593e-64 | -8.615850e-47 |
| Msa0719750 | Msa1405830 | 0.802398 | 5.718234e-49 | -8.615850e-47 |
| Msa0719750 | Msa1407810 | 0.826300 | 2.926602e-54 | -8.615850e-47 |
| Msa0719750 | Msa1412330 | -0.818789 | 1.631965e-52 | -8.615850e-47 |
| Msa0719750 | Msa1421630 | 0.816177 | 6.324439e-52 | -8.615850e-47 |
| Msa0719750 | Msa1422860 | 0.846626 | 1.930012e-59 | -8.615850e-47 |
| Msa0719750 | Msa1428230 | -0.863656 | 2.130917e-64 | -8.615850e-47 |
| Msa0719750 | Msa1432730 | -0.800530 | 1.380228e-48 | -8.615850e-47 |
| Msa0719750 | Msa1433360 | 0.823340 | 1.459989e-53 | -8.615850e-47 |
| Msa0719750 | Msa1436620 | 0.817691 | 2.891440e-52 | -8.615850e-47 |
| Msa0719750 | Msa1437780 | 0.825241 | 5.218783e-54 | -8.615850e-47 |
| Msa0719750 | Msa1438410 | -0.800203 | 1.608970e-48 | -8.615850e-47 |
| Msa0719750 | Msa1451200 | -0.809190 | 2.139190e-50 | -8.615850e-47 |
| Msa0719750 | Msa1451910 | -0.809793 | 1.587070e-50 | -8.615850e-47 |
| Msa0121320 | Msa0719750 | 0.809491 | 1.842939e-50 | -8.615850e-47 |
| Msa0129930 | Msa0719750 | -0.832862 | 7.420458e-56 | -8.615850e-47 |
| Msa0133140 | Msa0719750 | -0.835701 | 1.440000e-56 | -8.615850e-47 |
| Msa0136180 | Msa0719750 | -0.812268 | 4.616901e-51 | -8.615850e-47 |
| Msa0137010 | Msa0719750 | -0.806854 | 6.721294e-50 | -8.615850e-47 |
| Msa0151380 | Msa0719750 | -0.825113 | 5.594115e-54 | -8.615850e-47 |
| Msa0151510 | Msa0719750 | -0.831641 | 1.487481e-55 | -8.615850e-47 |
| Msa0154880 | Msa0719750 | -0.832806 | 7.660204e-56 | -8.615850e-47 |
| Msa0154890 | Msa0719750 | -0.845728 | 3.388389e-59 | -8.615850e-47 |
| Msa0165640 | Msa0719750 | 0.845495 | 3.918256e-59 | -8.615850e-47 |
| Msa0175240 | Msa0719750 | -0.804650 | 1.950917e-49 | -8.615850e-47 |
| Msa0183310 | Msa0719750 | -0.853406 | 2.441040e-61 | -8.615850e-47 |
| Msa0188620 | Msa0719750 | 0.805246 | 1.464100e-49 | -8.615850e-47 |
| Msa0189250 | Msa0719750 | -0.808052 | 3.743244e-50 | -8.615850e-47 |
| Msa0189560 | Msa0719750 | -0.842604 | 2.336804e-58 | -8.615850e-47 |
| Msa0198990 | Msa0719750 | 0.823866 | 1.099798e-53 | -8.615850e-47 |
| Msa0211460 | Msa0719750 | 0.804075 | 2.570436e-49 | -8.615850e-47 |
| Msa0213590 | Msa0719750 | -0.802246 | 6.145087e-49 | -8.615850e-47 |
| Msa0225790 | Msa0719750 | -0.832532 | 8.959271e-56 | -8.615850e-47 |
| Msa0227770 | Msa0719750 | -0.807888 | 4.055665e-50 | -8.615850e-47 |
| Msa0229750 | Msa0719750 | -0.811821 | 5.778821e-51 | -8.615850e-47 |
| Msa0234150 | Msa0719750 | 0.807037 | 6.147628e-50 | -8.615850e-47 |
| Msa0364910 | Msa0719750 | -0.802461 | 5.550019e-49 | -8.615850e-47 |
| Msa0365210 | Msa0719750 | 0.832265 | 1.043232e-55 | -8.615850e-47 |
| Msa0369580 | Msa0719750 | -0.806660 | 7.383986e-50 | -8.615850e-47 |
| Msa0371350 | Msa0719750 | -0.818296 | 2.111234e-52 | -8.615850e-47 |
| Msa0375330 | Msa0719750 | -0.814428 | 1.548837e-51 | -8.615850e-47 |
| Msa0387740 | Msa0719750 | -0.813829 | 2.099841e-51 | -8.615850e-47 |
| Msa0402070 | Msa0719750 | -0.816344 | 5.804070e-52 | -8.615850e-47 |
| Msa0412580 | Msa0719750 | -0.810004 | 1.429689e-50 | -8.615850e-47 |
| Msa0417990 | Msa0719750 | 0.802661 | 5.046050e-49 | -8.615850e-47 |
| Msa0437440 | Msa0719750 | -0.825965 | 3.515491e-54 | -8.615850e-47 |
| Msa0438150 | Msa0719750 | -0.800768 | 1.234499e-48 | -8.615850e-47 |
| Msa0438680 | Msa0719750 | -0.812486 | 4.138937e-51 | -8.615850e-47 |
| Msa0463820 | Msa0719750 | -0.814757 | 1.309237e-51 | -8.615850e-47 |
| Msa0474660 | Msa0719750 | -0.816626 | 5.019379e-52 | -8.615850e-47 |
| Msa0238960 | Msa0719750 | -0.802818 | 4.683140e-49 | -8.615850e-47 |
| Msa0241750 | Msa0719750 | 0.850396 | 1.745123e-60 | -8.615850e-47 |
| Msa0260580 | Msa0719750 | -0.839970 | 1.152352e-57 | -8.615850e-47 |
| Msa0260640 | Msa0719750 | -0.830006 | 3.743194e-55 | -8.615850e-47 |
| Msa0260870 | Msa0719750 | -0.800820 | 1.204806e-48 | -8.615850e-47 |
| Msa0261660 | Msa0719750 | -0.816095 | 6.597362e-52 | -8.615850e-47 |
| Msa0267450 | Msa0719750 | -0.819976 | 8.750261e-53 | -8.615850e-47 |
| Msa0267510 | Msa0719750 | -0.821318 | 4.303164e-53 | -8.615850e-47 |
| Msa0269220 | Msa0719750 | -0.813176 | 2.922907e-51 | -8.615850e-47 |
| Msa0279810 | Msa0719750 | 0.818011 | 2.448262e-52 | -8.615850e-47 |
| Msa0284800 | Msa0719750 | 0.822281 | 2.576497e-53 | -8.615850e-47 |
| Msa0287480 | Msa0719750 | 0.812242 | 4.678799e-51 | -8.615850e-47 |
| Msa0293060 | Msa0719750 | -0.809147 | 2.185012e-50 | -8.615850e-47 |
| Msa0298670 | Msa0719750 | -0.812031 | 5.201836e-51 | -8.615850e-47 |
| Msa0299130 | Msa0719750 | -0.806462 | 8.131088e-50 | -8.615850e-47 |
| Msa0300130 | Msa0719750 | -0.802787 | 4.753995e-49 | -8.615850e-47 |
| Msa0307430 | Msa0719750 | 0.800030 | 1.744860e-48 | -8.615850e-47 |
| Msa0313900 | Msa0719750 | 0.809704 | 1.658963e-50 | -8.615850e-47 |
| Msa0316720 | Msa0719750 | -0.806936 | 6.457872e-50 | -8.615850e-47 |
| Msa0319220 | Msa0719750 | 0.819048 | 1.425157e-52 | -8.615850e-47 |
| Msa0326170 | Msa0719750 | -0.856210 | 3.751487e-62 | -8.615850e-47 |
| Msa0330520 | Msa0719750 | 0.802670 | 5.023989e-49 | -8.615850e-47 |
| Msa0331070 | Msa0719750 | -0.822560 | 2.219075e-53 | -8.615850e-47 |
| Msa0340700 | Msa0719750 | -0.808185 | 3.506427e-50 | -8.615850e-47 |
| Msa0354970 | Msa0719750 | -0.808804 | 2.586642e-50 | -8.615850e-47 |
| Msa0355080 | Msa0719750 | -0.810614 | 1.055835e-50 | -8.615850e-47 |
| Msa0484590 | Msa0719750 | -0.815955 | 7.090588e-52 | -8.615850e-47 |
| Msa0506750 | Msa0719750 | 0.804684 | 1.919195e-49 | -8.615850e-47 |
| Msa0525180 | Msa0719750 | -0.820719 | 5.910962e-53 | -8.615850e-47 |
| Msa0526150 | Msa0719750 | 0.808088 | 3.677363e-50 | -8.615850e-47 |
| Msa0528180 | Msa0719750 | 0.801251 | 9.835771e-49 | -8.615850e-47 |
| Msa0541880 | Msa0719750 | 0.803645 | 3.158306e-49 | -8.615850e-47 |
| Msa0547560 | Msa0719750 | 0.803706 | 3.066618e-49 | -8.615850e-47 |
| Msa0548260 | Msa0719750 | -0.811824 | 5.771506e-51 | -8.615850e-47 |
| Msa0549130 | Msa0719750 | 0.813436 | 2.561570e-51 | -8.615850e-47 |
| Msa0556450 | Msa0719750 | -0.814932 | 1.197312e-51 | -8.615850e-47 |
| Msa0566280 | Msa0719750 | 0.819050 | 1.423597e-52 | -8.615850e-47 |
| Msa0567330 | Msa0719750 | 0.829995 | 3.767167e-55 | -8.615850e-47 |
| Msa0567570 | Msa0719750 | 0.817323 | 3.499700e-52 | -8.615850e-47 |
| Msa0568460 | Msa0719750 | -0.807807 | 4.219433e-50 | -8.615850e-47 |
| Msa0572760 | Msa0719750 | 0.820904 | 5.361191e-53 | -8.615850e-47 |
| Msa0576320 | Msa0719750 | 0.821399 | 4.122210e-53 | -8.615850e-47 |
| Msa0579220 | Msa0719750 | 0.804883 | 1.744584e-49 | -8.615850e-47 |
| Msa0580410 | Msa0719750 | -0.806050 | 9.928972e-50 | -8.615850e-47 |
| Msa0590620 | Msa0719750 | -0.835616 | 1.512832e-56 | -8.615850e-47 |
| Msa0597370 | Msa0719750 | -0.809960 | 1.461203e-50 | -8.615850e-47 |
| Msa0601380 | Msa0719750 | 0.803838 | 2.879900e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719750 | MtrunA17_Chr5g0410651 | 93.137 | 306 | 2 | 1 | 2 | 307 | 118 | 404 | 0.0 | 569 |
| Msa0719750 | MtrunA17_Chr3g0116571 | 54.460 | 213 | 94 | 3 | 2 | 214 | 113 | 322 | 5.58e-75 | 234 |
| Msa0719750 | MtrunA17_Chr4g0074441 | 63.636 | 165 | 59 | 1 | 2 | 165 | 112 | 276 | 2.38e-74 | 230 |
| Msa0719750 | MtrunA17_Chr7g0226551 | 64.744 | 156 | 55 | 0 | 2 | 157 | 113 | 268 | 3.25e-71 | 224 |
| Msa0719750 | MtrunA17_Chr6g0457861 | 54.040 | 198 | 88 | 2 | 2 | 197 | 125 | 321 | 1.86e-69 | 219 |
| Msa0719750 | MtrunA17_Chr7g0220431 | 64.744 | 156 | 55 | 0 | 2 | 157 | 113 | 268 | 1.41e-68 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719750 | AT1G32190.2 | 59.677 | 310 | 105 | 6 | 1 | 307 | 36 | 328 | 5.39e-104 | 307 |
| Msa0719750 | AT1G32190.1 | 59.871 | 309 | 104 | 6 | 2 | 307 | 122 | 413 | 6.53e-104 | 310 |
| Msa0719750 | AT2G24320.2 | 67.105 | 152 | 50 | 0 | 2 | 153 | 112 | 263 | 1.07e-77 | 239 |
| Msa0719750 | AT2G24320.1 | 67.105 | 152 | 50 | 0 | 2 | 153 | 105 | 256 | 1.35e-77 | 238 |
| Msa0719750 | AT3G30380.2 | 68.874 | 151 | 47 | 0 | 2 | 152 | 112 | 262 | 2.02e-74 | 233 |
| Msa0719750 | AT4G31020.2 | 64.706 | 153 | 54 | 0 | 2 | 154 | 113 | 265 | 2.32e-74 | 230 |
| Msa0719750 | AT4G31020.1 | 64.706 | 153 | 54 | 0 | 2 | 154 | 113 | 265 | 2.32e-74 | 230 |
| Msa0719750 | AT3G30380.1 | 68.874 | 151 | 47 | 0 | 2 | 152 | 112 | 262 | 3.74e-74 | 233 |
| Msa0719750 | AT4G24760.1 | 61.446 | 166 | 64 | 0 | 2 | 167 | 113 | 278 | 1.18e-71 | 226 |
| Msa0719750 | AT3G01690.1 | 55.729 | 192 | 64 | 2 | 2 | 173 | 113 | 303 | 2.32e-68 | 217 |
| Msa0719750 | AT1G66900.1 | 63.462 | 156 | 57 | 0 | 2 | 157 | 114 | 269 | 1.18e-67 | 213 |
| Msa0719750 | AT5G14390.1 | 55.440 | 193 | 65 | 2 | 2 | 173 | 113 | 305 | 1.86e-67 | 215 |
| Msa0719750 | AT1G13610.1 | 54.787 | 188 | 82 | 1 | 2 | 189 | 116 | 300 | 4.21e-66 | 211 |
| Msa0719750 | AT1G13610.2 | 54.839 | 186 | 81 | 1 | 4 | 189 | 18 | 200 | 1.18e-65 | 207 |
| Msa0719750 | AT5G38220.3 | 62.252 | 151 | 57 | 0 | 2 | 152 | 111 | 261 | 1.29e-64 | 207 |
| Msa0719750 | AT5G38220.1 | 62.252 | 151 | 57 | 0 | 2 | 152 | 111 | 261 | 1.29e-64 | 207 |
| Msa0719750 | AT5G38220.2 | 65.625 | 96 | 33 | 0 | 2 | 97 | 111 | 206 | 1.01e-35 | 129 |
Find 79 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACAGCGGAATTCTTTC+TGG | 0.105487 | 5_1:-15222603 | Msa0719750:CDS |
| CAACTTGGTCTTGAACATTT+AGG | 0.151307 | 5_1:+15220552 | None:intergenic |
| TTGTCATCTTCTCCATTTCT+TGG | 0.196441 | 5_1:+15220940 | None:intergenic |
| TTCCTGGCCAACTCCATATT+TGG | 0.237019 | 5_1:+15222710 | None:intergenic |
| CAACAAGGCAATGAACATTT+TGG | 0.250347 | 5_1:+15220579 | None:intergenic |
| CCGAAGTTCACAGATTGTTT+TGG | 0.276283 | 5_1:-15220645 | Msa0719750:CDS |
| CACAACTTCACAATATTAAA+TGG | 0.287002 | 5_1:+15220406 | None:intergenic |
| AACTTGGTCTTGAACATTTA+GGG | 0.297120 | 5_1:+15220553 | None:intergenic |
| CTTGGATGAATTTGCATAGA+TGG | 0.300293 | 5_1:+15220958 | None:intergenic |
| TAGAGTTTCTAAAGTTCTAT+TGG | 0.310536 | 5_1:-15220294 | Msa0719750:three_prime_UTR |
| GAATGCCTTGAAACCAAATA+TGG | 0.310658 | 5_1:-15222723 | Msa0719750:CDS |
| AATCAGGACAATTGATAGAT+AGG | 0.318245 | 5_1:+15220706 | None:intergenic |
| CTGCAGCAACACTTCATACT+AGG | 0.318434 | 5_1:+15220840 | None:intergenic |
| CATAGATGGCGTATGTAATC+AGG | 0.321303 | 5_1:+15220972 | None:intergenic |
| CTGCAGCAGCTAGAGCATTT+AGG | 0.323097 | 5_1:+15220744 | None:intergenic |
| CTGCAGCAGCTAGAGCATTT+AGG | 0.323097 | 5_1:+15220801 | None:intergenic |
| TGGCAACCGACTATGGAAAA+TGG | 0.324511 | 5_1:-15221057 | Msa0719750:CDS |
| GGTTACATGGCAACCGACTA+TGG | 0.328727 | 5_1:-15221064 | Msa0719750:CDS |
| CAGGAAGACGTAATCTTATA+CGG | 0.331817 | 5_1:-15222693 | Msa0719750:CDS |
| CAACTCCATATTTGGTTTCA+AGG | 0.370723 | 5_1:+15222718 | None:intergenic |
| TCAATTGTCCTGATTGTTGC+TGG | 0.380609 | 5_1:-15220698 | Msa0719750:CDS |
| GGGAGTCATATGAACCCTTA+TGG | 0.381353 | 5_1:-15221031 | Msa0719750:CDS |
| ATGCAAATTCATCCAAGAAA+TGG | 0.386608 | 5_1:-15220952 | Msa0719750:CDS |
| CGTATAAGATTACGTCTTCC+TGG | 0.406105 | 5_1:+15222694 | None:intergenic |
| GCCTCTCAGCCTCGGCAACT+TGG | 0.418920 | 5_1:+15222632 | None:intergenic |
| ACCGCCTCCTTTGATCCATA+AGG | 0.421520 | 5_1:+15221016 | None:intergenic |
| CCGCCTCCTTTGATCCATAA+GGG | 0.422572 | 5_1:+15221017 | None:intergenic |
| GGAAAACACAGTGGAAGAAA+TGG | 0.422791 | 5_1:-15220495 | Msa0719750:CDS |
| AAGTAGTGGATGGCAATTGT+AGG | 0.428046 | 5_1:-15220369 | Msa0719750:three_prime_UTR |
| ATAGATGCATGGAAAGTCTT+TGG | 0.433011 | 5_1:-15220436 | Msa0719750:three_prime_UTR |
| ATCTTATACGGGCAATCAGT+TGG | 0.448134 | 5_1:-15222681 | Msa0719750:CDS |
| AAGTGGACCAACATTGCATT+TGG | 0.456630 | 5_1:-15222658 | Msa0719750:CDS |
| CAGAAGATGACGTAGTCAAT+TGG | 0.479966 | 5_1:-15221085 | Msa0719750:CDS |
| CTTACATGTATTACAAGGAC+AGG | 0.499842 | 5_1:+15222117 | None:intergenic |
| CTAGGTTTCCAGCAACAATC+AGG | 0.501958 | 5_1:+15220690 | None:intergenic |
| ATCAGGACAATTGATAGATA+GGG | 0.503330 | 5_1:+15220707 | None:intergenic |
| TTACAAAGAGGAGGAAGTAG+TGG | 0.507057 | 5_1:-15220383 | Msa0719750:three_prime_UTR |
| ATTTACTTACATGTATTACA+AGG | 0.507529 | 5_1:+15222112 | None:intergenic |
| GAGGCTAATGGTTATAACAT+TGG | 0.508159 | 5_1:-15220464 | Msa0719750:exon |
| AGTAGTGGATGGCAATTGTA+GGG | 0.509874 | 5_1:-15220368 | Msa0719750:three_prime_UTR |
| CTCTATGTCAGCATATGTGC+TGG | 0.520235 | 5_1:+15222755 | None:intergenic |
| ATGGAAAACAAAGAGGCTAA+TGG | 0.522581 | 5_1:-15220476 | Msa0719750:exon |
| GTTGCATGAGTTGTTTCTGT+TGG | 0.522996 | 5_1:-15220530 | Msa0719750:CDS |
| AACCAAATATGGAGTTGGCC+AGG | 0.523037 | 5_1:-15222712 | Msa0719750:CDS |
| AAACAACTCATGCAACAACT+TGG | 0.530466 | 5_1:+15220537 | None:intergenic |
| TAGTGGATGGCAATTGTAGG+GGG | 0.537732 | 5_1:-15220366 | Msa0719750:three_prime_UTR |
| GAACATCAACAAAATAAAGA+AGG | 0.540351 | 5_1:-15222148 | Msa0719750:CDS |
| TACGGGCAATCAGTTGGAAG+TGG | 0.541674 | 5_1:-15222675 | Msa0719750:CDS |
| CATTGGAATGTATAGATGCA+TGG | 0.557705 | 5_1:-15220447 | Msa0719750:three_prime_UTR |
| CTTGAAACCAAATATGGAGT+TGG | 0.559208 | 5_1:-15222717 | Msa0719750:CDS |
| GCATATGTGCTGGATTCACT+AGG | 0.560112 | 5_1:+15222765 | None:intergenic |
| GACGTAGTCAATTGGTTACA+TGG | 0.564056 | 5_1:-15221077 | Msa0719750:CDS |
| TTACTCATAATCATAAACAT+TGG | 0.565872 | 5_1:-15220265 | Msa0719750:three_prime_UTR |
| TATGAACCCTTATGGATCAA+AGG | 0.569011 | 5_1:-15221023 | Msa0719750:CDS |
| TGTGAAGTTGTGTTACAAAG+AGG | 0.570245 | 5_1:-15220395 | Msa0719750:three_prime_UTR |
| GAAGTTGTGTTACAAAGAGG+AGG | 0.570423 | 5_1:-15220392 | Msa0719750:three_prime_UTR |
| ATTTGGCAGCCAAGTTGCCG+AGG | 0.573657 | 5_1:-15222641 | Msa0719750:CDS |
| GTAGTGGATGGCAATTGTAG+GGG | 0.574645 | 5_1:-15220367 | Msa0719750:three_prime_UTR |
| CCAAAACAATCTGTGAACTT+CGG | 0.579808 | 5_1:+15220645 | None:intergenic |
| TGCAGCAACACTTCATACTA+GGG | 0.580616 | 5_1:+15220841 | None:intergenic |
| AGGAAGACGTAATCTTATAC+GGG | 0.584093 | 5_1:-15222692 | Msa0719750:CDS |
| CAGCACATATGCTGACATAG+AGG | 0.584108 | 5_1:-15222754 | Msa0719750:CDS |
| TTGGCTGCCAAATGCAATGT+TGG | 0.588250 | 5_1:+15222651 | None:intergenic |
| ACCGACTATGGAAAATGGCA+AGG | 0.593180 | 5_1:-15221052 | Msa0719750:CDS |
| GCCAAGTTGCCGAGGCTGAG+AGG | 0.600499 | 5_1:-15222633 | Msa0719750:CDS |
| GTTGCCGAGGCTGAGAGGCG+TGG | 0.600591 | 5_1:-15222628 | Msa0719750:CDS |
| CCCTTATGGATCAAAGGAGG+CGG | 0.604217 | 5_1:-15221017 | Msa0719750:CDS |
| CGGCAACACTTGATACAGCT+AGG | 0.604629 | 5_1:+15220672 | None:intergenic |
| ATAGATGGCGTATGTAATCA+GGG | 0.614420 | 5_1:+15220973 | None:intergenic |
| AGAACCACGCCTCTCAGCCT+CGG | 0.615868 | 5_1:+15222624 | None:intergenic |
| AGTGGATGGCAATTGTAGGG+GGG | 0.619673 | 5_1:-15220365 | Msa0719750:three_prime_UTR |
| GGAAGAAATGGAAAACAAAG+AGG | 0.620021 | 5_1:-15220483 | Msa0719750:CDS |
| AATCTGTGAACTTCGGTAAG+CGG | 0.623999 | 5_1:+15220652 | None:intergenic |
| CATACTAGGGCATGTACATG+TGG | 0.635302 | 5_1:+15220854 | None:intergenic |
| AAAGAGGAGGAAGTAGTGGA+TGG | 0.635402 | 5_1:-15220379 | Msa0719750:three_prime_UTR |
| GAACATTTAGGGTAGCAACA+AGG | 0.657420 | 5_1:+15220564 | None:intergenic |
| CCGACTATGGAAAATGGCAA+GGG | 0.671837 | 5_1:-15221051 | Msa0719750:CDS |
| GAACCCTTATGGATCAAAGG+AGG | 0.684609 | 5_1:-15221020 | Msa0719750:CDS |
| AGAGGCGTGGTTCTTCACAG+CGG | 0.773437 | 5_1:-15222615 | Msa0719750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATCTTCTATATATTTT+TGG | - | chr5_1:15222663-15222682 | Msa0719750:CDS | 10.0% |
| !!! | TATATCTTCTATATATTTTT+GGG | - | chr5_1:15222664-15222683 | Msa0719750:CDS | 10.0% |
| !!! | ACTTTTATTATTTAAGTTGT+TGG | + | chr5_1:15220704-15220723 | None:intergenic | 15.0% |
| !! | TAAATAATAAAAGTGAGTTT+CGG | - | chr5_1:15220710-15220729 | Msa0719750:CDS | 15.0% |
| !! | TTTATATGATAAATACATTG+AGG | - | chr5_1:15221711-15221730 | Msa0719750:intron | 15.0% |
| !!! | TTTAATCATTTGCATTTTGT+AGG | + | chr5_1:15220628-15220647 | None:intergenic | 20.0% |
| !! | ATGTGTCTTTCATTTATTAA+CGG | - | chr5_1:15220678-15220697 | Msa0719750:CDS | 20.0% |
| !! | ATTTACTTACATGTATTACA+AGG | + | chr5_1:15220877-15220896 | None:intergenic | 20.0% |
| !!! | TTTATTTCTTTTGACATTCA+AGG | - | chr5_1:15220932-15220951 | Msa0719750:CDS | 20.0% |
| !!! | TTTGGATTTTATACTATACA+TGG | - | chr5_1:15221003-15221022 | Msa0719750:CDS | 20.0% |
| !! | GAAAAAAAAATGTCAACTAT+AGG | + | chr5_1:15221677-15221696 | None:intergenic | 20.0% |
| !! | ATTTATCATATAAACTAGTG+AGG | + | chr5_1:15221705-15221724 | None:intergenic | 20.0% |
| !!! | TTTAAACATGCTACAATTTT+AGG | + | chr5_1:15221802-15221821 | None:intergenic | 20.0% |
| !! | TTACTCATAATCATAAACAT+TGG | - | chr5_1:15222721-15222740 | Msa0719750:CDS | 20.0% |
| !! | TTTTTGCTTCGACATTTATA+AGG | - | chr5_1:15220436-15220455 | Msa0719750:three_prime_UTR | 25.0% |
| ! | TTCGACATTTATAAGGTAAT+AGG | - | chr5_1:15220443-15220462 | Msa0719750:three_prime_UTR | 25.0% |
| !!! | CTCATTTTTTAAGATGCATT+TGG | - | chr5_1:15220533-15220552 | Msa0719750:CDS | 25.0% |
| ! | GAACATCAACAAAATAAAGA+AGG | - | chr5_1:15220838-15220857 | Msa0719750:CDS | 25.0% |
| !!! | AATGATTGATTCTCTAGTTT+TGG | - | chr5_1:15220985-15221004 | Msa0719750:CDS | 25.0% |
| ! | ATCTATAAATCTAACACCAT+TGG | + | chr5_1:15221171-15221190 | None:intergenic | 25.0% |
| ! | AAAAAATAGCTTGAGTTTGT+TGG | - | chr5_1:15221321-15221340 | Msa0719750:intron | 25.0% |
| ! | TGGAATAACAACATTAAATG+TGG | + | chr5_1:15221379-15221398 | None:intergenic | 25.0% |
| !!! | GGATCAATTTAAGGTATTTT+TGG | + | chr5_1:15221399-15221418 | None:intergenic | 25.0% |
| ! | AACATTACTGGATCAATTTA+AGG | + | chr5_1:15221408-15221427 | None:intergenic | 25.0% |
| ! | CCAATAAAATAGTTAAGAGT+TGG | + | chr5_1:15221511-15221530 | None:intergenic | 25.0% |
| !! | CCAACTCTTAACTATTTTAT+TGG | - | chr5_1:15221508-15221527 | Msa0719750:intron | 25.0% |
| ! | CTTATTGTGTTAAATACATG+TGG | + | chr5_1:15221592-15221611 | None:intergenic | 25.0% |
| ! | ACTATAGGATGCAATTAAAA+TGG | + | chr5_1:15221662-15221681 | None:intergenic | 25.0% |
| ! | TGCAGATGATATGATTTAAT+TGG | + | chr5_1:15221761-15221780 | None:intergenic | 25.0% |
| !!! | ACATGCTAAATTATTTTGCA+GGG | - | chr5_1:15221876-15221895 | Msa0719750:intron | 25.0% |
| ! | CACAACTTCACAATATTAAA+TGG | + | chr5_1:15222583-15222602 | None:intergenic | 25.0% |
| !!! | TAGAGTTTCTAAAGTTCTAT+TGG | - | chr5_1:15222692-15222711 | Msa0719750:CDS | 25.0% |
| !!! | ATGCCTAGTTTTGTATACTT+AGG | - | chr5_1:15220739-15220758 | Msa0719750:CDS | 30.0% |
| TCTCCTAAGTATACAAAACT+AGG | + | chr5_1:15220745-15220764 | None:intergenic | 30.0% | |
| ! | TATTTTGTTGATGTTCTGCA+TGG | + | chr5_1:15220834-15220853 | None:intergenic | 30.0% |
| ! | AACCAATTTTCCATTAAGAG+AGG | - | chr5_1:15221113-15221132 | Msa0719750:intron | 30.0% |
| AACCTCTCTTAATGGAAAAT+TGG | + | chr5_1:15221118-15221137 | None:intergenic | 30.0% | |
| ! | AATTTTCCATTAAGAGAGGT+TGG | - | chr5_1:15221117-15221136 | Msa0719750:intron | 30.0% |
| ! | TCTAACACCATTGGATTTTA+TGG | + | chr5_1:15221162-15221181 | None:intergenic | 30.0% |
| CTATTTACGTCATTCTCTAT+TGG | - | chr5_1:15221194-15221213 | Msa0719750:intron | 30.0% | |
| ! | ATTGATCCAGTAATGTTTTG+AGG | - | chr5_1:15221411-15221430 | Msa0719750:intron | 30.0% |
| TGAGAACGAAAATGTTATGA+TGG | - | chr5_1:15221853-15221872 | Msa0719750:intron | 30.0% | |
| !! | GACATGCTAAATTATTTTGC+AGG | - | chr5_1:15221875-15221894 | Msa0719750:intron | 30.0% |
| ATGCAAATTCATCCAAGAAA+TGG | - | chr5_1:15222034-15222053 | Msa0719750:intron | 30.0% | |
| !!! | ATTTTGATTCCAGACTTTGT+CGG | + | chr5_1:15222094-15222113 | None:intergenic | 30.0% |
| ATCAGGACAATTGATAGATA+GGG | + | chr5_1:15222282-15222301 | None:intergenic | 30.0% | |
| AATCAGGACAATTGATAGAT+AGG | + | chr5_1:15222283-15222302 | None:intergenic | 30.0% | |
| !! | AACTTGGTCTTGAACATTTA+GGG | + | chr5_1:15222436-15222455 | None:intergenic | 30.0% |
| ! | TTTCTGTTGGCAATGTTTTA+TGG | - | chr5_1:15222469-15222488 | Msa0719750:intron | 30.0% |
| ! | TTCTGTTGGCAATGTTTTAT+GGG | - | chr5_1:15222470-15222489 | Msa0719750:intron | 30.0% |
| GAATGCCTTGAAACCAAATA+TGG | - | chr5_1:15220263-15220282 | Msa0719750:three_prime_UTR | 35.0% | |
| ! | CAACTCCATATTTGGTTTCA+AGG | + | chr5_1:15220271-15220290 | None:intergenic | 35.0% |
| CTTGAAACCAAATATGGAGT+TGG | - | chr5_1:15220269-15220288 | Msa0719750:three_prime_UTR | 35.0% | |
| CAGGAAGACGTAATCTTATA+CGG | - | chr5_1:15220293-15220312 | Msa0719750:three_prime_UTR | 35.0% | |
| AGGAAGACGTAATCTTATAC+GGG | - | chr5_1:15220294-15220313 | Msa0719750:three_prime_UTR | 35.0% | |
| CTTACATGTATTACAAGGAC+AGG | + | chr5_1:15220872-15220891 | None:intergenic | 35.0% | |
| ACCAATGCCATAAAATCCAA+TGG | - | chr5_1:15221152-15221171 | Msa0719750:intron | 35.0% | |
| ! | ACCATTGGATTTTATGGCAT+TGG | + | chr5_1:15221156-15221175 | None:intergenic | 35.0% |
| TGATCTCCTCAAAACATTAC+TGG | + | chr5_1:15221420-15221439 | None:intergenic | 35.0% | |
| AGGAGATCACCATCATAATT+AGG | - | chr5_1:15221431-15221450 | Msa0719750:intron | 35.0% | |
| GGAGATCACCATCATAATTA+GGG | - | chr5_1:15221432-15221451 | Msa0719750:intron | 35.0% | |
| GAGATCACCATCATAATTAG+GGG | - | chr5_1:15221433-15221452 | Msa0719750:intron | 35.0% | |
| TAACCTACCCCTAATTATGA+TGG | + | chr5_1:15221443-15221462 | None:intergenic | 35.0% | |
| TATGAACCCTTATGGATCAA+AGG | - | chr5_1:15221963-15221982 | Msa0719750:intron | 35.0% | |
| ATAGATGGCGTATGTAATCA+GGG | + | chr5_1:15222016-15222035 | None:intergenic | 35.0% | |
| CTTGGATGAATTTGCATAGA+TGG | + | chr5_1:15222031-15222050 | None:intergenic | 35.0% | |
| TTGTCATCTTCTCCATTTCT+TGG | + | chr5_1:15222049-15222068 | None:intergenic | 35.0% | |
| CCAAAACAATCTGTGAACTT+CGG | + | chr5_1:15222344-15222363 | None:intergenic | 35.0% | |
| ! | CATTTTGGACAACAACAACT+AGG | + | chr5_1:15222395-15222414 | None:intergenic | 35.0% |
| ! | CAACAAGGCAATGAACATTT+TGG | + | chr5_1:15222410-15222429 | None:intergenic | 35.0% |
| !! | CAACTTGGTCTTGAACATTT+AGG | + | chr5_1:15222437-15222456 | None:intergenic | 35.0% |
| AAACAACTCATGCAACAACT+TGG | + | chr5_1:15222452-15222471 | None:intergenic | 35.0% | |
| ! | TGTTTTATGGGAAAACACAG+TGG | - | chr5_1:15222482-15222501 | Msa0719750:intron | 35.0% |
| GGAAGAAATGGAAAACAAAG+AGG | - | chr5_1:15222503-15222522 | Msa0719750:intron | 35.0% | |
| ATGGAAAACAAAGAGGCTAA+TGG | - | chr5_1:15222510-15222529 | Msa0719750:intron | 35.0% | |
| GAGGCTAATGGTTATAACAT+TGG | - | chr5_1:15222522-15222541 | Msa0719750:intron | 35.0% | |
| CATTGGAATGTATAGATGCA+TGG | - | chr5_1:15222539-15222558 | Msa0719750:intron | 35.0% | |
| ATAGATGCATGGAAAGTCTT+TGG | - | chr5_1:15222550-15222569 | Msa0719750:intron | 35.0% | |
| TGTGAAGTTGTGTTACAAAG+AGG | - | chr5_1:15222591-15222610 | Msa0719750:CDS | 35.0% | |
| CGTATAAGATTACGTCTTCC+TGG | + | chr5_1:15220295-15220314 | None:intergenic | 40.0% | |
| ATCTTATACGGGCAATCAGT+TGG | - | chr5_1:15220305-15220324 | Msa0719750:three_prime_UTR | 40.0% | |
| AAGTGGACCAACATTGCATT+TGG | - | chr5_1:15220328-15220347 | Msa0719750:three_prime_UTR | 40.0% | |
| TTGTTGATGTTCTGCATGGT+CGG | + | chr5_1:15220830-15220849 | None:intergenic | 40.0% | |
| ATGAAATTCAAGCAGGATGG+TGG | + | chr5_1:15221043-15221062 | None:intergenic | 40.0% | |
| ACCATCCTGCTTGAATTTCA+TGG | - | chr5_1:15221042-15221061 | Msa0719750:CDS | 40.0% | |
| ACCATGAAATTCAAGCAGGA+TGG | + | chr5_1:15221046-15221065 | None:intergenic | 40.0% | |
| AGCTACCATGAAATTCAAGC+AGG | + | chr5_1:15221050-15221069 | None:intergenic | 40.0% | |
| GCTTGAATTTCATGGTAGCT+AGG | - | chr5_1:15221050-15221069 | Msa0719750:CDS | 40.0% | |
| ACGACTAGAGAAAGAACACA+AGG | + | chr5_1:15221076-15221095 | None:intergenic | 40.0% | |
| ATGTAGCCAACCTCTCTTAA+TGG | + | chr5_1:15221126-15221145 | None:intergenic | 40.0% | |
| ! | TCGATGGCCTGTAGATTTTA+AGG | - | chr5_1:15221217-15221236 | Msa0719750:intron | 40.0% |
| CGGTAGACCTTAAAATCTAC+AGG | + | chr5_1:15221227-15221246 | None:intergenic | 40.0% | |
| TACCGCCTCTAACAAATGTA+TGG | - | chr5_1:15221242-15221261 | Msa0719750:intron | 40.0% | |
| ! | CACCATACATTTGTTAGAGG+CGG | + | chr5_1:15221247-15221266 | None:intergenic | 40.0% |
| ! | CTGCACCATACATTTGTTAG+AGG | + | chr5_1:15221250-15221269 | None:intergenic | 40.0% |
| TCACCATCATAATTAGGGGT+AGG | - | chr5_1:15221437-15221456 | Msa0719750:intron | 40.0% | |
| ! | TGTGGGATCTAGTTCCAAAA+TGG | + | chr5_1:15221555-15221574 | None:intergenic | 40.0% |
| TAGATCCCACATCTAGTGTT+GGG | - | chr5_1:15221564-15221583 | Msa0719750:intron | 40.0% | |
| CAGAAGATGACGTAGTCAAT+TGG | - | chr5_1:15221901-15221920 | Msa0719750:intron | 40.0% | |
| GACGTAGTCAATTGGTTACA+TGG | - | chr5_1:15221909-15221928 | Msa0719750:intron | 40.0% | |
| CATAGATGGCGTATGTAATC+AGG | + | chr5_1:15222017-15222036 | None:intergenic | 40.0% | |
| ! | GACTTTGTCGGATCTTTTTG+AGG | + | chr5_1:15222082-15222101 | None:intergenic | 40.0% |
| CAAAAAGATCCGACAAAGTC+TGG | - | chr5_1:15222082-15222101 | Msa0719750:intron | 40.0% | |
| TGCAGCAACACTTCATACTA+GGG | + | chr5_1:15222148-15222167 | None:intergenic | 40.0% | |
| TCAATTGTCCTGATTGTTGC+TGG | - | chr5_1:15222288-15222307 | Msa0719750:intron | 40.0% | |
| AATCTGTGAACTTCGGTAAG+CGG | + | chr5_1:15222337-15222356 | None:intergenic | 40.0% | |
| ! | CCGAAGTTCACAGATTGTTT+TGG | - | chr5_1:15222341-15222360 | Msa0719750:intron | 40.0% |
| ! | GAACATTTAGGGTAGCAACA+AGG | + | chr5_1:15222425-15222444 | None:intergenic | 40.0% |
| !! | GTTGCATGAGTTGTTTCTGT+TGG | - | chr5_1:15222456-15222475 | Msa0719750:intron | 40.0% |
| GGAAAACACAGTGGAAGAAA+TGG | - | chr5_1:15222491-15222510 | Msa0719750:intron | 40.0% | |
| GAAGTTGTGTTACAAAGAGG+AGG | - | chr5_1:15222594-15222613 | Msa0719750:CDS | 40.0% | |
| TTACAAAGAGGAGGAAGTAG+TGG | - | chr5_1:15222603-15222622 | Msa0719750:CDS | 40.0% | |
| !! | AAGTAGTGGATGGCAATTGT+AGG | - | chr5_1:15222617-15222636 | Msa0719750:CDS | 40.0% |
| !! | AGTAGTGGATGGCAATTGTA+GGG | - | chr5_1:15222618-15222637 | Msa0719750:CDS | 40.0% |
| GCATATGTGCTGGATTCACT+AGG | + | chr5_1:15220224-15220243 | None:intergenic | 45.0% | |
| CTCTATGTCAGCATATGTGC+TGG | + | chr5_1:15220234-15220253 | None:intergenic | 45.0% | |
| CAGCACATATGCTGACATAG+AGG | - | chr5_1:15220232-15220251 | Msa0719750:three_prime_UTR | 45.0% | |
| AACCAAATATGGAGTTGGCC+AGG | - | chr5_1:15220274-15220293 | Msa0719750:three_prime_UTR | 45.0% | |
| TTCCTGGCCAACTCCATATT+TGG | + | chr5_1:15220279-15220298 | None:intergenic | 45.0% | |
| TTGGCTGCCAAATGCAATGT+TGG | + | chr5_1:15220338-15220357 | None:intergenic | 45.0% | |
| CTTCACAGCGGAATTCTTTC+TGG | - | chr5_1:15220383-15220402 | Msa0719750:three_prime_UTR | 45.0% | |
| TGTTCTGCATGGTCGGAAAA+GGG | + | chr5_1:15220823-15220842 | None:intergenic | 45.0% | |
| ATGTTCTGCATGGTCGGAAA+AGG | + | chr5_1:15220824-15220843 | None:intergenic | 45.0% | |
| CGTCATTCTCTATTGGTCGA+TGG | - | chr5_1:15221201-15221220 | Msa0719750:intron | 45.0% | |
| ! | GCACATGTGTCTCACCATTT+TGG | - | chr5_1:15221538-15221557 | Msa0719750:intron | 45.0% |
| CTAGATCCCACATCTAGTGT+TGG | - | chr5_1:15221563-15221582 | Msa0719750:intron | 45.0% | |
| TGGCAACCGACTATGGAAAA+TGG | - | chr5_1:15221929-15221948 | Msa0719750:intron | 45.0% | |
| ACCGACTATGGAAAATGGCA+AGG | - | chr5_1:15221934-15221953 | Msa0719750:intron | 45.0% | |
| !!! | CCCTTGCCATTTTCCATAGT+CGG | + | chr5_1:15221938-15221957 | None:intergenic | 45.0% |
| CCGACTATGGAAAATGGCAA+GGG | - | chr5_1:15221935-15221954 | Msa0719750:intron | 45.0% | |
| GGGAGTCATATGAACCCTTA+TGG | - | chr5_1:15221955-15221974 | Msa0719750:intron | 45.0% | |
| GAACCCTTATGGATCAAAGG+AGG | - | chr5_1:15221966-15221985 | Msa0719750:intron | 45.0% | |
| CATACTAGGGCATGTACATG+TGG | + | chr5_1:15222135-15222154 | None:intergenic | 45.0% | |
| CTGCAGCAACACTTCATACT+AGG | + | chr5_1:15222149-15222168 | None:intergenic | 45.0% | |
| CTAGGTTTCCAGCAACAATC+AGG | + | chr5_1:15222299-15222318 | None:intergenic | 45.0% | |
| ! | AAAGAGGAGGAAGTAGTGGA+TGG | - | chr5_1:15222607-15222626 | Msa0719750:CDS | 45.0% |
| !! | GTAGTGGATGGCAATTGTAG+GGG | - | chr5_1:15222619-15222638 | Msa0719750:CDS | 45.0% |
| ! | TAGTGGATGGCAATTGTAGG+GGG | - | chr5_1:15222620-15222639 | Msa0719750:CDS | 45.0% |
| CAATTGTAGGGGGGTGATAT+AGG | - | chr5_1:15222630-15222649 | Msa0719750:CDS | 45.0% | |
| !!! | AATGATTAAATTATATATTT+TGG | - | chr5_1:15220638-15220657 | Msa0719750:CDS | 5.0% |
| TACGGGCAATCAGTTGGAAG+TGG | - | chr5_1:15220311-15220330 | Msa0719750:three_prime_UTR | 50.0% | |
| TGGAGCCCAACACTAGATGT+GGG | + | chr5_1:15221572-15221591 | None:intergenic | 50.0% | |
| GGTTACATGGCAACCGACTA+TGG | - | chr5_1:15221922-15221941 | Msa0719750:intron | 50.0% | |
| CCGCCTCCTTTGATCCATAA+GGG | + | chr5_1:15221972-15221991 | None:intergenic | 50.0% | |
| CCCTTATGGATCAAAGGAGG+CGG | - | chr5_1:15221969-15221988 | Msa0719750:intron | 50.0% | |
| ACCGCCTCCTTTGATCCATA+AGG | + | chr5_1:15221973-15221992 | None:intergenic | 50.0% | |
| ! | CTGCAGCAGCTAGAGCATTT+AGG | + | chr5_1:15222188-15222207 | None:intergenic | 50.0% |
| ! | CTGCAGCAGCTAGAGCATTT+AGG | + | chr5_1:15222188-15222207 | None:intergenic | 50.0% |
| CGGCAACACTTGATACAGCT+AGG | + | chr5_1:15222317-15222336 | None:intergenic | 50.0% | |
| AGTGGATGGCAATTGTAGGG+GGG | - | chr5_1:15222621-15222640 | Msa0719750:CDS | 50.0% | |
| TAGGGGGGTGATATAGGTGA+TGG | - | chr5_1:15222636-15222655 | Msa0719750:CDS | 50.0% | |
| ATTTGGCAGCCAAGTTGCCG+AGG | - | chr5_1:15220345-15220364 | Msa0719750:three_prime_UTR | 55.0% | |
| ! | AGAGGCGTGGTTCTTCACAG+CGG | - | chr5_1:15220371-15220390 | Msa0719750:three_prime_UTR | 55.0% |
| GTGGAGCCCAACACTAGATG+TGG | + | chr5_1:15221573-15221592 | None:intergenic | 55.0% | |
| AGAACCACGCCTCTCAGCCT+CGG | + | chr5_1:15220365-15220384 | None:intergenic | 60.0% | |
| GCCAAGTTGCCGAGGCTGAG+AGG | - | chr5_1:15220353-15220372 | Msa0719750:three_prime_UTR | 65.0% | |
| GCCTCTCAGCCTCGGCAACT+TGG | + | chr5_1:15220357-15220376 | None:intergenic | 65.0% | |
| GTTGCCGAGGCTGAGAGGCG+TGG | - | chr5_1:15220358-15220377 | Msa0719750:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 15220215 | 15222793 | 15220215 | ID=Msa0719750;Name=Msa0719750 |
| chr5_1 | mRNA | 15220215 | 15222793 | 15220215 | ID=Msa0719750-mRNA-1;Parent=Msa0719750;Name=Msa0719750-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|1|0.66|1|0|0.66|3|264|307 |
| chr5_1 | exon | 15220215 | 15221111 | 15220215 | ID=Msa0719750-mRNA-1:exon:5915;Parent=Msa0719750-mRNA-1 |
| chr5_1 | exon | 15222122 | 15222169 | 15222122 | ID=Msa0719750-mRNA-1:exon:5914;Parent=Msa0719750-mRNA-1 |
| chr5_1 | exon | 15222551 | 15222793 | 15222551 | ID=Msa0719750-mRNA-1:exon:5913;Parent=Msa0719750-mRNA-1 |
| chr5_1 | CDS | 15222551 | 15222793 | 15222551 | ID=Msa0719750-mRNA-1:cds;Parent=Msa0719750-mRNA-1 |
| chr5_1 | CDS | 15222122 | 15222169 | 15222122 | ID=Msa0719750-mRNA-1:cds;Parent=Msa0719750-mRNA-1 |
| chr5_1 | CDS | 15220479 | 15221111 | 15220479 | ID=Msa0719750-mRNA-1:cds;Parent=Msa0719750-mRNA-1 |
| chr5_1 | three_prime_UTR | 15220215 | 15220478 | 15220215 | ID=Msa0719750-mRNA-1:three_prime_utr;Parent=Msa0719750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
