Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089460 | CAA61334.1 | 98.966 | 387 | 3 | 1 | 1 | 387 | 1 | 386 | 0.0 | 790 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089460 | sp|P42753|CCD31_ARATH | 56.026 | 307 | 110 | 6 | 1 | 307 | 1 | 282 | 4.44e-107 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089460 | Q40338 | 98.966 | 387 | 3 | 1 | 1 | 387 | 1 | 386 | 0.0 | 790 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0089460 | 0.805353 | 1.390806e-49 | -8.615850e-47 |
| Msa0015570 | Msa0089460 | 0.816846 | 4.480922e-52 | -8.615850e-47 |
| Msa0025160 | Msa0089460 | 0.809978 | 1.448483e-50 | -8.615850e-47 |
| Msa0032980 | Msa0089460 | 0.802140 | 6.460054e-49 | -8.615850e-47 |
| Msa0042640 | Msa0089460 | 0.884729 | 1.494605e-71 | -8.615850e-47 |
| Msa0062340 | Msa0089460 | 0.811522 | 6.714439e-51 | -8.615850e-47 |
| Msa0072520 | Msa0089460 | 0.809093 | 2.243376e-50 | -8.615850e-47 |
| Msa0075530 | Msa0089460 | 0.807180 | 5.732352e-50 | -8.615850e-47 |
| Msa0077340 | Msa0089460 | 0.857118 | 2.029478e-62 | -8.615850e-47 |
| Msa0077560 | Msa0089460 | 0.808409 | 3.141946e-50 | -8.615850e-47 |
| Msa0078130 | Msa0089460 | 0.800852 | 1.186543e-48 | -8.615850e-47 |
| Msa0089460 | Msa0091350 | 0.801438 | 9.004985e-49 | -8.615850e-47 |
| Msa0089460 | Msa0094790 | 0.829525 | 4.904077e-55 | -8.615850e-47 |
| Msa0089460 | Msa0108880 | 0.809381 | 1.946355e-50 | -8.615850e-47 |
| Msa0089460 | Msa0122330 | 0.805516 | 1.285809e-49 | -8.615850e-47 |
| Msa0089460 | Msa0123070 | 0.810811 | 9.575277e-51 | -8.615850e-47 |
| Msa0089460 | Msa0125360 | 0.845907 | 3.029182e-59 | -8.615850e-47 |
| Msa0089460 | Msa0140130 | 0.826051 | 3.352724e-54 | -8.615850e-47 |
| Msa0089460 | Msa0140380 | 0.802652 | 5.068637e-49 | -8.615850e-47 |
| Msa0089460 | Msa0141640 | 0.803189 | 3.924846e-49 | -8.615850e-47 |
| Msa0089460 | Msa0156050 | 0.806574 | 7.701400e-50 | -8.615850e-47 |
| Msa0089460 | Msa0156090 | 0.806043 | 9.962131e-50 | -8.615850e-47 |
| Msa0089460 | Msa0159590 | 0.805956 | 1.039307e-49 | -8.615850e-47 |
| Msa0089460 | Msa0168050 | 0.808086 | 3.681514e-50 | -8.615850e-47 |
| Msa0089460 | Msa0178450 | 0.932593 | 6.751138e-95 | -8.615850e-47 |
| Msa0089460 | Msa0188610 | 0.822120 | 2.807446e-53 | -8.615850e-47 |
| Msa0089460 | Msa0188620 | 0.807675 | 4.501034e-50 | -8.615850e-47 |
| Msa0089460 | Msa0230800 | 0.818207 | 2.211526e-52 | -8.615850e-47 |
| Msa0089460 | Msa0230870 | 0.816887 | 4.385955e-52 | -8.615850e-47 |
| Msa0089460 | Msa0232760 | 0.807902 | 4.029247e-50 | -8.615850e-47 |
| Msa0089460 | Msa0269210 | 0.809638 | 1.713711e-50 | -8.615850e-47 |
| Msa0089460 | Msa0270340 | 0.808213 | 3.459287e-50 | -8.615850e-47 |
| Msa0089460 | Msa0367690 | 0.822467 | 2.332828e-53 | -8.615850e-47 |
| Msa0089460 | Msa0373500 | 0.815820 | 7.600055e-52 | -8.615850e-47 |
| Msa0089460 | Msa0383000 | 0.810641 | 1.042056e-50 | -8.615850e-47 |
| Msa0089460 | Msa0415450 | 0.826185 | 3.116274e-54 | -8.615850e-47 |
| Msa0089460 | Msa0432010 | 0.817786 | 2.753042e-52 | -8.615850e-47 |
| Msa0089460 | Msa0433150 | 0.819089 | 1.394432e-52 | -8.615850e-47 |
| Msa0089460 | Msa0433760 | 0.813375 | 2.642229e-51 | -8.615850e-47 |
| Msa0089460 | Msa0436330 | 0.800528 | 1.381524e-48 | -8.615850e-47 |
| Msa0089460 | Msa0436910 | 0.810609 | 1.058628e-50 | -8.615850e-47 |
| Msa0089460 | Msa0460070 | 0.831442 | 1.665409e-55 | -8.615850e-47 |
| Msa0089460 | Msa0468620 | 0.814876 | 1.232580e-51 | -8.615850e-47 |
| Msa0089460 | Msa0477630 | 0.813243 | 2.825587e-51 | -8.615850e-47 |
| Msa0089460 | Msa0481890 | 0.811045 | 8.519163e-51 | -8.615850e-47 |
| Msa0089460 | Msa0514500 | 0.816109 | 6.549786e-52 | -8.615850e-47 |
| Msa0089460 | Msa0520260 | 0.803731 | 3.030465e-49 | -8.615850e-47 |
| Msa0089460 | Msa0520870 | 0.819489 | 1.130965e-52 | -8.615850e-47 |
| Msa0089460 | Msa0521680 | 0.818038 | 2.414754e-52 | -8.615850e-47 |
| Msa0089460 | Msa0524520 | 0.806630 | 7.491730e-50 | -8.615850e-47 |
| Msa0089460 | Msa0528570 | 0.801328 | 9.484696e-49 | -8.615850e-47 |
| Msa0089460 | Msa0529030 | 0.867946 | 9.405205e-66 | -8.615850e-47 |
| Msa0089460 | Msa0531960 | 0.810440 | 1.151758e-50 | -8.615850e-47 |
| Msa0089460 | Msa0542430 | 0.821453 | 4.004495e-53 | -8.615850e-47 |
| Msa0089460 | Msa0561560 | 0.810031 | 1.410986e-50 | -8.615850e-47 |
| Msa0089460 | Msa0570010 | 0.805257 | 1.456389e-49 | -8.615850e-47 |
| Msa0089460 | Msa0588920 | 0.808908 | 2.458046e-50 | -8.615850e-47 |
| Msa0089460 | Msa0620500 | 0.808258 | 3.383447e-50 | -8.615850e-47 |
| Msa0089460 | Msa0621710 | 0.829316 | 5.509913e-55 | -8.615850e-47 |
| Msa0089460 | Msa0657440 | 0.800891 | 1.164743e-48 | -8.615850e-47 |
| Msa0089460 | Msa0662980 | 0.815617 | 8.434107e-52 | -8.615850e-47 |
| Msa0089460 | Msa0666700 | 0.819960 | 8.827072e-53 | -8.615850e-47 |
| Msa0089460 | Msa0674480 | 0.804129 | 2.505367e-49 | -8.615850e-47 |
| Msa0089460 | Msa0693890 | 0.838544 | 2.699786e-57 | -8.615850e-47 |
| Msa0089460 | Msa0698730 | 0.800240 | 1.581330e-48 | -8.615850e-47 |
| Msa0089460 | Msa0709440 | 0.814222 | 1.719541e-51 | -8.615850e-47 |
| Msa0089460 | Msa0714520 | 0.810494 | 1.120767e-50 | -8.615850e-47 |
| Msa0089460 | Msa0716480 | 0.845214 | 4.670000e-59 | -8.615850e-47 |
| Msa0089460 | Msa0716890 | 0.817928 | 2.556880e-52 | -8.615850e-47 |
| Msa0089460 | Msa0717900 | 0.821790 | 3.346966e-53 | -8.615850e-47 |
| Msa0089460 | Msa0719270 | 0.813743 | 2.193330e-51 | -8.615850e-47 |
| Msa0089460 | Msa0734250 | 0.824435 | 8.085681e-54 | -8.615850e-47 |
| Msa0089460 | Msa0738700 | 0.804813 | 1.804074e-49 | -8.615850e-47 |
| Msa0089460 | Msa0740710 | 0.830224 | 3.312876e-55 | -8.615850e-47 |
| Msa0089460 | Msa0743440 | 0.823124 | 1.640129e-53 | -8.615850e-47 |
| Msa0089460 | Msa0773630 | 0.806788 | 6.940376e-50 | -8.615850e-47 |
| Msa0089460 | Msa0780910 | 0.831947 | 1.250627e-55 | -8.615850e-47 |
| Msa0089460 | Msa0805680 | 0.812607 | 3.894273e-51 | -8.615850e-47 |
| Msa0089460 | Msa0811020 | 0.800550 | 1.367526e-48 | -8.615850e-47 |
| Msa0089460 | Msa0815970 | 0.819694 | 1.015290e-52 | -8.615850e-47 |
| Msa0089460 | Msa0816080 | 0.806199 | 9.239010e-50 | -8.615850e-47 |
| Msa0089460 | Msa0818130 | 0.824601 | 7.390412e-54 | -8.615850e-47 |
| Msa0089460 | Msa0818150 | 0.800648 | 1.305993e-48 | -8.615850e-47 |
| Msa0089460 | Msa0821160 | 0.822117 | 2.812025e-53 | -8.615850e-47 |
| Msa0089460 | Msa0837460 | 0.852712 | 3.856231e-61 | -8.615850e-47 |
| Msa0089460 | Msa0840520 | 0.807338 | 5.307919e-50 | -8.615850e-47 |
| Msa0089460 | Msa0855230 | 0.816974 | 4.193711e-52 | -8.615850e-47 |
| Msa0089460 | Msa0857800 | 0.811300 | 7.500331e-51 | -8.615850e-47 |
| Msa0089460 | Msa0866530 | 0.814297 | 1.654953e-51 | -8.615850e-47 |
| Msa0089460 | Msa0879920 | 0.815226 | 1.030562e-51 | -8.615850e-47 |
| Msa0089460 | Msa0909760 | 0.810775 | 9.744976e-51 | -8.615850e-47 |
| Msa0089460 | Msa0921590 | 0.823089 | 1.671289e-53 | -8.615850e-47 |
| Msa0089460 | Msa0931590 | 0.822162 | 2.745598e-53 | -8.615850e-47 |
| Msa0089460 | Msa0989370 | 0.801318 | 9.528059e-49 | -8.615850e-47 |
| Msa0089460 | Msa1002640 | 0.813110 | 3.021603e-51 | -8.615850e-47 |
| Msa0089460 | Msa1072940 | 0.811729 | 6.052080e-51 | -8.615850e-47 |
| Msa0089460 | Msa1076020 | 0.808027 | 3.788626e-50 | -8.615850e-47 |
| Msa0089460 | Msa1078880 | 0.828209 | 1.021106e-54 | -8.615850e-47 |
| Msa0089460 | Msa1078970 | 0.827737 | 1.325931e-54 | -8.615850e-47 |
| Msa0089460 | Msa1084530 | 0.823226 | 1.552190e-53 | -8.615850e-47 |
| Msa0089460 | Msa1116660 | 0.821860 | 3.225805e-53 | -8.615850e-47 |
| Msa0089460 | Msa1116740 | 0.830814 | 2.375600e-55 | -8.615850e-47 |
| Msa0089460 | Msa1125820 | 0.821597 | 3.709424e-53 | -8.615850e-47 |
| Msa0089460 | Msa1125990 | 0.821925 | 3.115782e-53 | -8.615850e-47 |
| Msa0089460 | Msa1132530 | 0.800943 | 1.136672e-48 | -8.615850e-47 |
| Msa0089460 | Msa1154550 | 0.806868 | 6.673264e-50 | -8.615850e-47 |
| Msa0089460 | Msa1159590 | 0.810891 | 9.198681e-51 | -8.615850e-47 |
| Msa0089460 | Msa1162880 | 0.805293 | 1.431918e-49 | -8.615850e-47 |
| Msa0089460 | Msa1169190 | 0.823883 | 1.089927e-53 | -8.615850e-47 |
| Msa0089460 | Msa1171290 | 0.811701 | 6.136774e-51 | -8.615850e-47 |
| Msa0089460 | Msa1192560 | 0.830093 | 3.564935e-55 | -8.615850e-47 |
| Msa0089460 | Msa1192590 | 0.830184 | 3.387533e-55 | -8.615850e-47 |
| Msa0089460 | Msa1215980 | 0.808647 | 2.794214e-50 | -8.615850e-47 |
| Msa0089460 | Msa1218820 | 0.806549 | 7.793402e-50 | -8.615850e-47 |
| Msa0089460 | Msa1219770 | 0.821608 | 3.688217e-53 | -8.615850e-47 |
| Msa0089460 | Msa1223390 | 0.814686 | 1.357788e-51 | -8.615850e-47 |
| Msa0089460 | Msa1228580 | 0.838539 | 2.708544e-57 | -8.615850e-47 |
| Msa0089460 | Msa1228630 | 0.806084 | 9.764637e-50 | -8.615850e-47 |
| Msa0089460 | Msa1252790 | 0.824212 | 9.122966e-54 | -8.615850e-47 |
| Msa0089460 | Msa1254100 | 0.807075 | 6.034560e-50 | -8.615850e-47 |
| Msa0089460 | Msa1254540 | 0.824770 | 6.740363e-54 | -8.615850e-47 |
| Msa0089460 | Msa1263740 | 0.813556 | 2.411694e-51 | -8.615850e-47 |
| Msa0089460 | Msa1263780 | 0.829375 | 5.331906e-55 | -8.615850e-47 |
| Msa0089460 | Msa1265650 | 0.805936 | 1.049048e-49 | -8.615850e-47 |
| Msa0089460 | Msa1279120 | 0.834944 | 2.236171e-56 | -8.615850e-47 |
| Msa0089460 | Msa1294460 | 0.812925 | 3.316279e-51 | -8.615850e-47 |
| Msa0089460 | Msa1301820 | 0.808760 | 2.643947e-50 | -8.615850e-47 |
| Msa0089460 | Msa1303560 | 0.813831 | 2.097526e-51 | -8.615850e-47 |
| Msa0089460 | Msa1303650 | 0.815106 | 1.095426e-51 | -8.615850e-47 |
| Msa0089460 | Msa1308820 | 0.811577 | 6.530288e-51 | -8.615850e-47 |
| Msa0089460 | Msa1308850 | 0.837287 | 5.682791e-57 | -8.615850e-47 |
| Msa0089460 | Msa1309090 | 0.805261 | 1.454091e-49 | -8.615850e-47 |
| Msa0089460 | Msa1332950 | 0.815698 | 8.092217e-52 | -8.615850e-47 |
| Msa0089460 | Msa1364410 | 0.803976 | 2.695989e-49 | -8.615850e-47 |
| Msa0089460 | Msa1368750 | 0.820197 | 7.788207e-53 | -8.615850e-47 |
| Msa0089460 | Msa1372040 | 0.885732 | 6.308555e-72 | -8.615850e-47 |
| Msa0089460 | Msa1374790 | 0.814630 | 1.397355e-51 | -8.615850e-47 |
| Msa0089460 | Msa1381470 | 0.813603 | 2.354472e-51 | -8.615850e-47 |
| Msa0089460 | Msa1384150 | 0.814835 | 1.258518e-51 | -8.615850e-47 |
| Msa0089460 | Msa1387440 | 0.815866 | 7.420446e-52 | -8.615850e-47 |
| Msa0089460 | Msa1405460 | 0.866205 | 3.381202e-65 | -8.615850e-47 |
| Msa0089460 | Msa1409410 | 0.820192 | 7.811156e-53 | -8.615850e-47 |
| Msa0089460 | Msa1415540 | 0.800420 | 1.453117e-48 | -8.615850e-47 |
| Msa0089460 | Msa1433790 | 0.803911 | 2.780977e-49 | -8.615850e-47 |
| Msa0089460 | Msa1433860 | 0.806891 | 6.598598e-50 | -8.615850e-47 |
| Msa0089460 | Msa1435960 | 0.932564 | 7.052105e-95 | -8.615850e-47 |
| Msa0089460 | Msa1436620 | 0.807010 | 6.227517e-50 | -8.615850e-47 |
| Msa0089460 | Msa1437930 | 0.807127 | 5.883543e-50 | -8.615850e-47 |
| Msa0089460 | Msa1445120 | 0.807377 | 5.207147e-50 | -8.615850e-47 |
| Msa0089460 | Msa1450190 | 0.813842 | 2.085815e-51 | -8.615850e-47 |
| Msa0089460 | Msa1451820 | 0.816144 | 6.434351e-52 | -8.615850e-47 |
| Msa0089460 | Msa1457840 | 0.818721 | 1.690705e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089460 | MtrunA17_Chr1g0208231 | 92.513 | 374 | 25 | 1 | 17 | 387 | 11 | 384 | 0.0 | 669 |
| Msa0089460 | MtrunA17_Chr3g0134261 | 53.261 | 368 | 131 | 12 | 14 | 366 | 3 | 344 | 1.73e-114 | 337 |
| Msa0089460 | MtrunA17_Chr4g0053381 | 49.587 | 363 | 164 | 8 | 23 | 381 | 8 | 355 | 2.32e-112 | 332 |
| Msa0089460 | MtrunA17_Chr5g0412471 | 37.023 | 262 | 157 | 2 | 110 | 371 | 92 | 345 | 6.99e-48 | 166 |
| Msa0089460 | MtrunA17_Chr4g0041721 | 33.969 | 262 | 163 | 5 | 76 | 334 | 59 | 313 | 1.19e-47 | 165 |
| Msa0089460 | MtrunA17_Chr3g0133211 | 52.672 | 131 | 61 | 1 | 96 | 225 | 82 | 212 | 3.27e-42 | 151 |
| Msa0089460 | MtrunA17_Chr5g0414271 | 38.839 | 224 | 126 | 2 | 98 | 312 | 56 | 277 | 6.08e-39 | 142 |
| Msa0089460 | MtrunA17_Chr8g0364521 | 36.726 | 226 | 132 | 2 | 96 | 312 | 71 | 294 | 3.98e-38 | 140 |
| Msa0089460 | MtrunA17_Chr5g0427191 | 31.765 | 255 | 164 | 4 | 108 | 357 | 86 | 335 | 6.68e-32 | 123 |
| Msa0089460 | MtrunA17_Chr8g0367661 | 32.906 | 234 | 136 | 6 | 110 | 333 | 108 | 330 | 2.05e-29 | 117 |
| Msa0089460 | MtrunA17_Chr5g0401271 | 30.201 | 298 | 174 | 9 | 23 | 304 | 13 | 292 | 3.51e-29 | 116 |
| Msa0089460 | MtrunA17_Chr3g0134781 | 40.523 | 153 | 87 | 2 | 74 | 226 | 34 | 182 | 9.50e-29 | 114 |
| Msa0089460 | MtrunA17_Chr2g0323361 | 29.600 | 250 | 152 | 8 | 125 | 362 | 64 | 301 | 6.66e-22 | 95.1 |
| Msa0089460 | MtrunA17_Chr2g0280941 | 33.121 | 157 | 98 | 3 | 112 | 268 | 43 | 192 | 8.40e-21 | 90.9 |
| Msa0089460 | MtrunA17_Chr4g0054011 | 27.426 | 237 | 164 | 6 | 73 | 304 | 31 | 264 | 8.72e-14 | 71.6 |
| Msa0089460 | MtrunA17_Chr1g0152871 | 30.435 | 161 | 94 | 5 | 114 | 266 | 131 | 281 | 4.28e-12 | 67.0 |
| Msa0089460 | MtrunA17_Chr3g0134421 | 33.121 | 157 | 94 | 6 | 114 | 266 | 124 | 273 | 3.03e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089460 | AT4G34160.1 | 56.026 | 307 | 110 | 6 | 1 | 307 | 1 | 282 | 4.51e-108 | 322 |
| Msa0089460 | AT5G67260.1 | 44.882 | 381 | 173 | 9 | 14 | 383 | 11 | 365 | 3.19e-93 | 284 |
| Msa0089460 | AT5G67260.2 | 45.576 | 373 | 166 | 9 | 14 | 375 | 11 | 357 | 8.32e-91 | 279 |
| Msa0089460 | AT3G50070.1 | 42.933 | 375 | 185 | 7 | 14 | 384 | 10 | 359 | 2.68e-89 | 274 |
| Msa0089460 | AT2G22490.1 | 35.931 | 231 | 136 | 3 | 110 | 333 | 97 | 322 | 1.87e-43 | 155 |
| Msa0089460 | AT2G22490.2 | 35.776 | 232 | 136 | 4 | 110 | 333 | 97 | 323 | 1.02e-41 | 150 |
| Msa0089460 | AT1G70210.1 | 37.931 | 203 | 126 | 0 | 110 | 312 | 82 | 284 | 8.15e-40 | 145 |
| Msa0089460 | AT5G65420.4 | 48.718 | 117 | 60 | 0 | 110 | 226 | 78 | 194 | 4.49e-35 | 130 |
| Msa0089460 | AT5G65420.2 | 49.138 | 116 | 59 | 0 | 110 | 225 | 78 | 193 | 4.68e-35 | 129 |
| Msa0089460 | AT5G65420.1 | 49.138 | 116 | 59 | 0 | 110 | 225 | 78 | 193 | 7.61e-35 | 130 |
| Msa0089460 | AT5G65420.3 | 45.238 | 126 | 59 | 1 | 110 | 225 | 78 | 203 | 1.00e-32 | 125 |
| Msa0089460 | AT5G10440.2 | 37.143 | 175 | 110 | 0 | 51 | 225 | 10 | 184 | 1.13e-29 | 114 |
| Msa0089460 | AT5G10440.1 | 33.790 | 219 | 144 | 1 | 51 | 268 | 10 | 228 | 1.29e-29 | 116 |
| Msa0089460 | AT4G03270.1 | 30.921 | 304 | 181 | 11 | 71 | 364 | 16 | 300 | 2.85e-24 | 102 |
| Msa0089460 | AT4G03270.2 | 30.921 | 304 | 180 | 12 | 71 | 364 | 16 | 299 | 1.22e-22 | 97.4 |
| Msa0089460 | AT4G37630.2 | 36.806 | 144 | 82 | 3 | 91 | 226 | 45 | 187 | 2.82e-21 | 92.8 |
| Msa0089460 | AT4G37630.3 | 36.986 | 146 | 81 | 4 | 91 | 226 | 45 | 189 | 1.17e-20 | 90.9 |
| Msa0089460 | AT4G37630.1 | 33.014 | 209 | 107 | 7 | 23 | 226 | 9 | 189 | 2.61e-20 | 91.3 |
| Msa0089460 | AT5G02110.1 | 25.357 | 280 | 184 | 9 | 106 | 378 | 74 | 335 | 1.02e-19 | 89.7 |
| Msa0089460 | AT5G02110.2 | 25.751 | 233 | 148 | 9 | 153 | 378 | 92 | 306 | 2.95e-15 | 76.3 |
Find 90 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGATTCATGTAAATGAATT+TGG | 0.114219 | 1_2:+71101060 | None:intergenic |
| ATCATATTTCTATAATAAAT+TGG | 0.121107 | 1_2:-71100828 | Msa0089460:three_prime_UTR |
| CTTCTAGACCATACCAAATT+TGG | 0.122651 | 1_2:-71100861 | Msa0089460:three_prime_UTR |
| ATTTGTTTGTTTGAAATATT+TGG | 0.165317 | 1_2:-71100762 | Msa0089460:three_prime_UTR |
| CTTAAAGTCAATGCTCATTA+TGG | 0.232843 | 1_2:-71102521 | Msa0089460:CDS |
| GATATAAATATGTCCAAATT+TGG | 0.245540 | 1_2:+71100848 | None:intergenic |
| ATCTTCATTGGGAGTTTCTT+AGG | 0.261503 | 1_2:-71102109 | Msa0089460:CDS |
| TGAATTTGTCACCGATTAAC+AGG | 0.270558 | 1_2:-71101287 | Msa0089460:CDS |
| CTAACAAAAGCAGAGGTAAA+AGG | 0.274372 | 1_2:+71102690 | None:intergenic |
| TAATTTCTGATGAGTTAAAA+AGG | 0.280244 | 1_2:-71100991 | Msa0089460:three_prime_UTR |
| AGATCTATATTTATTTACTA+TGG | 0.284803 | 1_2:-71101157 | Msa0089460:three_prime_UTR |
| GATTGAAAACTAATCTTCAT+TGG | 0.293518 | 1_2:-71102121 | Msa0089460:CDS |
| ATGATATCTGTTTCATTTCA+AGG | 0.312964 | 1_2:-71100914 | Msa0089460:three_prime_UTR |
| AGATGATGATAGAGGATTAA+AGG | 0.316170 | 1_2:-71101020 | Msa0089460:three_prime_UTR |
| AACAACAAACTATGATATAT+TGG | 0.316538 | 1_2:-71102723 | Msa0089460:CDS |
| TAGAAAGAGTAGAGAGTATA+GGG | 0.317667 | 1_2:+71103090 | None:intergenic |
| CTTACAAATGCAAATAATTA+TGG | 0.328803 | 1_2:-71101471 | Msa0089460:CDS |
| CTACTATGATAAAATAATAT+TGG | 0.355346 | 1_2:+71100667 | None:intergenic |
| TTGCTGTTAACTATCTTGAT+AGG | 0.355913 | 1_2:-71102475 | Msa0089460:CDS |
| CTAGAAAGAGTAGAGAGTAT+AGG | 0.358472 | 1_2:+71103089 | None:intergenic |
| TGAAATGAAACAGATATCAT+AGG | 0.368633 | 1_2:+71100917 | None:intergenic |
| TTTATAGATTCAAGATTTGT+TGG | 0.378968 | 1_2:-71101885 | Msa0089460:intron |
| TTCTTGTTGAGTTATCTCTT+TGG | 0.382076 | 1_2:+71102622 | None:intergenic |
| AAGTGTGTTGTTGAAGTTGT+TGG | 0.394682 | 1_2:+71102843 | None:intergenic |
| TCATATTTCTATAATAAATT+GGG | 0.397018 | 1_2:-71100827 | Msa0089460:three_prime_UTR |
| AGATTCATGTAAATGAATTT+GGG | 0.403114 | 1_2:+71101061 | None:intergenic |
| CACGTCGTGAAGCCGTTGAA+TGG | 0.426745 | 1_2:-71102547 | Msa0089460:CDS |
| TGATTCTGTCAACACTGAAA+TGG | 0.427443 | 1_2:-71102199 | Msa0089460:CDS |
| TTCTTGGTCTTCTTAAACAC+AGG | 0.430266 | 1_2:+71101324 | None:intergenic |
| ATTGAAAACTAATCTTCATT+GGG | 0.430502 | 1_2:-71102120 | Msa0089460:CDS |
| TTTATTTAATCTAGTAAGAC+AGG | 0.433476 | 1_2:-71100643 | Msa0089460:three_prime_UTR |
| AAAGGACAGAAAACGGATAG+AGG | 0.440283 | 1_2:+71101222 | None:intergenic |
| TTCTAGATCACATTATAAGA+AGG | 0.447293 | 1_2:-71102148 | Msa0089460:CDS |
| AAATGAATTTGGGACATTGT+TGG | 0.449762 | 1_2:+71101071 | None:intergenic |
| CCGACAATGACCCTGTTAAT+CGG | 0.454527 | 1_2:+71101276 | None:intergenic |
| TATCATCACTCTGTTCAATC+TGG | 0.455099 | 1_2:+71101814 | None:intergenic |
| GATCACATTATAAGAAGGCT+TGG | 0.460558 | 1_2:-71102143 | Msa0089460:CDS |
| TTTGAGTGGACCATTTGGTT+GGG | 0.464110 | 1_2:+71100699 | None:intergenic |
| GTTTGAAATATTTGGATGGA+TGG | 0.468379 | 1_2:-71100754 | Msa0089460:three_prime_UTR |
| ATTACGCCACTTGGACTACC+AGG | 0.474746 | 1_2:+71101420 | None:intergenic |
| GAAGGAGAAGTTGTAGATGA+AGG | 0.479700 | 1_2:-71102764 | Msa0089460:CDS |
| TAACAAAAGCAGAGGTAAAA+GGG | 0.491260 | 1_2:+71102691 | None:intergenic |
| AGATACTAAATATGTGTTTG+AGG | 0.495892 | 1_2:-71102249 | Msa0089460:CDS |
| AGACAGGAAGAAATAAAGAA+AGG | 0.496540 | 1_2:-71100627 | Msa0089460:three_prime_UTR |
| GACTTTAAGCATCCATTCAA+CGG | 0.507804 | 1_2:+71102535 | None:intergenic |
| AGAGTAGAGAGTATAGGGAG+AGG | 0.513215 | 1_2:+71103095 | None:intergenic |
| AGAAAAGAGTGTGTTGTCAC+TGG | 0.519215 | 1_2:+71102167 | None:intergenic |
| GGCAAAGACTATTCAGAGAA+TGG | 0.519295 | 1_2:-71102228 | Msa0089460:CDS |
| ATGATAGAGGATTAAAGGAA+TGG | 0.522983 | 1_2:-71101015 | Msa0089460:three_prime_UTR |
| ACAGCATCAATTACGCCACT+TGG | 0.527358 | 1_2:+71101411 | None:intergenic |
| TGAAATATTTGGATGGATGG+TGG | 0.528447 | 1_2:-71100751 | Msa0089460:three_prime_UTR |
| CCGATTAACAGGGTCATTGT+CGG | 0.532014 | 1_2:-71101276 | Msa0089460:CDS |
| TTTAAGAAGACCAAGAATCA+AGG | 0.533821 | 1_2:-71101318 | Msa0089460:CDS |
| ATTGAACAGAGTGATGATAA+TGG | 0.537100 | 1_2:-71101810 | Msa0089460:CDS |
| AAATATGTCCAAATTTGGTA+TGG | 0.537560 | 1_2:+71100853 | None:intergenic |
| CTGATGGTTCTAACGATTCG+TGG | 0.539073 | 1_2:-71101380 | Msa0089460:CDS |
| TGGTTGTGTTCCTTCTGTGT+TGG | 0.540643 | 1_2:-71101865 | Msa0089460:CDS |
| CAGTGGCAAGATGATGATAG+AGG | 0.542425 | 1_2:-71101028 | Msa0089460:three_prime_UTR |
| CTCTTCTTCACTGAAGAAGA+TGG | 0.544080 | 1_2:-71102891 | Msa0089460:exon |
| GAAATGAAACAGATATCATA+GGG | 0.549435 | 1_2:+71100918 | None:intergenic |
| AGATGTGCGACCCAACCAAA+TGG | 0.552472 | 1_2:-71100709 | Msa0089460:three_prime_UTR |
| TTTACATGAATCTCTTGAAG+AGG | 0.556584 | 1_2:-71101051 | Msa0089460:three_prime_UTR |
| AACATAAAACATTGTAGCAG+TGG | 0.556927 | 1_2:+71101842 | None:intergenic |
| CATTCAACGGCTTCACGACG+TGG | 0.556963 | 1_2:+71102548 | None:intergenic |
| AAATGGGAAGATGATGATGA+AGG | 0.560202 | 1_2:-71102782 | Msa0089460:CDS |
| AAGGACAGAAAACGGATAGA+GGG | 0.568780 | 1_2:+71101223 | None:intergenic |
| TGAATCTCTTGAAGAGGCAG+TGG | 0.568786 | 1_2:-71101045 | Msa0089460:three_prime_UTR |
| CATCTTCTTCAGTGAAGAAG+AGG | 0.570851 | 1_2:+71102892 | None:intergenic |
| AATATTTGGATGGATGGTGG+TGG | 0.572220 | 1_2:-71100748 | Msa0089460:three_prime_UTR |
| GTTTGTTTGAAATATTTGGA+TGG | 0.587629 | 1_2:-71100758 | Msa0089460:three_prime_UTR |
| ATATTTGGATGGATGGTGGT+GGG | 0.598602 | 1_2:-71100747 | Msa0089460:three_prime_UTR |
| CGAAAGTATGAAGAAATCCC+TGG | 0.598980 | 1_2:-71101438 | Msa0089460:CDS |
| TTCTGTTCTAACAAAAGCAG+AGG | 0.599651 | 1_2:+71102683 | None:intergenic |
| AGAGAGAAGACAGAACAAAG+AGG | 0.607759 | 1_2:-71102989 | Msa0089460:five_prime_UTR |
| CTTCTTAAACACAGGCTCTG+AGG | 0.608564 | 1_2:+71101332 | None:intergenic |
| ACTTGAAGGTCTAAGAGAAG+AGG | 0.611584 | 1_2:+71102350 | None:intergenic |
| GGTGATTGTGATGATGATGA+TGG | 0.615500 | 1_2:+71102864 | None:intergenic |
| GTAGCAGTGGCCAACACAGA+AGG | 0.618074 | 1_2:+71101855 | None:intergenic |
| TCAGTGAAGAAGAGGGTGTG+TGG | 0.620217 | 1_2:+71102900 | None:intergenic |
| AAGAGGAAAAGAGAGAGCGA+TGG | 0.620696 | 1_2:-71102972 | Msa0089460:five_prime_UTR |
| TTCTAACGATTCGTGGACAG+TGG | 0.621696 | 1_2:-71101373 | Msa0089460:CDS |
| TCTAACGATTCGTGGACAGT+GGG | 0.629045 | 1_2:-71101372 | Msa0089460:CDS |
| GCAACAAGCTGAATCATCCA+TGG | 0.629983 | 1_2:+71102419 | None:intergenic |
| TAATGTTCTCAAAATCAGCA+AGG | 0.638487 | 1_2:-71101763 | Msa0089460:intron |
| GAATTTGTCACCGATTAACA+GGG | 0.642593 | 1_2:-71101286 | Msa0089460:CDS |
| TTACGCCACTTGGACTACCA+GGG | 0.660070 | 1_2:+71101421 | None:intergenic |
| ATCTTCTTCAGTGAAGAAGA+GGG | 0.660634 | 1_2:+71102893 | None:intergenic |
| GAAATCCCTGGTAGTCCAAG+TGG | 0.669163 | 1_2:-71101426 | Msa0089460:CDS |
| ACAGAGTGATGATAATGGTG+TGG | 0.694988 | 1_2:-71101805 | Msa0089460:CDS |
| TCAACAAGAAACATATTACG+AGG | 0.716642 | 1_2:-71102609 | Msa0089460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTTAAATAAAA+AGG | + | chr1_2:71102645-71102664 | None:intergenic | 0.0% |
| !!! | AAATTAAACATAAAGTATTA+AGG | + | chr1_2:71102139-71102158 | None:intergenic | 10.0% |
| !!! | AAATAAATATAGATCTTTTT+GGG | + | chr1_2:71102685-71102704 | None:intergenic | 10.0% |
| !!! | TAAATAAATATAGATCTTTT+TGG | + | chr1_2:71102686-71102705 | None:intergenic | 10.0% |
| !!! | ATCATATTTCTATAATAAAT+TGG | - | chr1_2:71103018-71103037 | Msa0089460:five_prime_UTR | 10.0% |
| !!! | TCATATTTCTATAATAAATT+GGG | - | chr1_2:71103019-71103038 | Msa0089460:five_prime_UTR | 10.0% |
| !!! | AATAAATATAGATCTTTTTG+GGG | + | chr1_2:71102684-71102703 | None:intergenic | 15.0% |
| !! | AGATCTATATTTATTTACTA+TGG | - | chr1_2:71102689-71102708 | Msa0089460:CDS | 15.0% |
| !!! | AATAAATTGGGAATAATTTT+TGG | - | chr1_2:71103031-71103050 | Msa0089460:five_prime_UTR | 15.0% |
| !!! | ATTTGTTTGTTTGAAATATT+TGG | - | chr1_2:71103084-71103103 | Msa0089460:five_prime_UTR | 15.0% |
| !! | CTACTATGATAAAATAATAT+TGG | + | chr1_2:71103182-71103201 | None:intergenic | 15.0% |
| !! | CTTTGTTCATTATAAAAAGA+AGG | + | chr1_2:71100924-71100943 | None:intergenic | 20.0% |
| !!! | CTTCTTTTTATAATGAACAA+AGG | - | chr1_2:71100922-71100941 | Msa0089460:three_prime_UTR | 20.0% |
| !! | AACAACAAACTATGATATAT+TGG | - | chr1_2:71101123-71101142 | Msa0089460:three_prime_UTR | 20.0% |
| !! | CAAAAACAAACATAAGAAAA+AGG | + | chr1_2:71101566-71101585 | None:intergenic | 20.0% |
| !!! | CTTATGTTTGTTTTTGTTAA+AGG | - | chr1_2:71101570-71101589 | Msa0089460:intron | 20.0% |
| !! | ATTGAAAACTAATCTTCATT+GGG | - | chr1_2:71101726-71101745 | Msa0089460:intron | 20.0% |
| !! | TTTATAGATTCAAGATTTGT+TGG | - | chr1_2:71101961-71101980 | Msa0089460:intron | 20.0% |
| !! | AATTTAATAGAACTACTCAA+TGG | - | chr1_2:71102173-71102192 | Msa0089460:CDS | 20.0% |
| !! | ATTTAATAGAACTACTCAAT+GGG | - | chr1_2:71102174-71102193 | Msa0089460:CDS | 20.0% |
| !! | CTTACAAATGCAAATAATTA+TGG | - | chr1_2:71102375-71102394 | Msa0089460:CDS | 20.0% |
| !! | TAAATAAAAAGGACAGAAAA+CGG | + | chr1_2:71102634-71102653 | None:intergenic | 20.0% |
| !!! | ATAAATATAGATCTTTTTGG+GGG | + | chr1_2:71102683-71102702 | None:intergenic | 20.0% |
| !! | AGATTCATGTAAATGAATTT+GGG | + | chr1_2:71102788-71102807 | None:intergenic | 20.0% |
| !! | TAATTTCTGATGAGTTAAAA+AGG | - | chr1_2:71102855-71102874 | Msa0089460:CDS | 20.0% |
| !! | GATATAAATATGTCCAAATT+TGG | + | chr1_2:71103001-71103020 | None:intergenic | 20.0% |
| !! | TTTATTTAATCTAGTAAGAC+AGG | - | chr1_2:71103203-71103222 | Msa0089460:five_prime_UTR | 20.0% |
| ! | AGATACTAAATATGTGTTTG+AGG | - | chr1_2:71101597-71101616 | Msa0089460:intron | 25.0% |
| ! | TTCTAGATCACATTATAAGA+AGG | - | chr1_2:71101698-71101717 | Msa0089460:intron | 25.0% |
| ! | GATTGAAAACTAATCTTCAT+TGG | - | chr1_2:71101725-71101744 | Msa0089460:intron | 25.0% |
| !!! | TGAAAGAGTACTAAAAATGT+TGG | + | chr1_2:71101804-71101823 | None:intergenic | 25.0% |
| ! | TAAACAAAAAACACATGCAA+AGG | + | chr1_2:71102316-71102335 | None:intergenic | 25.0% |
| !!! | TTTGGGGGTAATTTTTTATA+TGG | + | chr1_2:71102668-71102687 | None:intergenic | 25.0% |
| ! | GAGATTCATGTAAATGAATT+TGG | + | chr1_2:71102789-71102808 | None:intergenic | 25.0% |
| ! | GAAATGAAACAGATATCATA+GGG | + | chr1_2:71102931-71102950 | None:intergenic | 25.0% |
| ! | TGAAATGAAACAGATATCAT+AGG | + | chr1_2:71102932-71102951 | None:intergenic | 25.0% |
| ! | ATGATATCTGTTTCATTTCA+AGG | - | chr1_2:71102932-71102951 | Msa0089460:five_prime_UTR | 25.0% |
| ! | AAATATGTCCAAATTTGGTA+TGG | + | chr1_2:71102996-71103015 | None:intergenic | 25.0% |
| !! | GTTTGTTTGAAATATTTGGA+TGG | - | chr1_2:71103088-71103107 | Msa0089460:five_prime_UTR | 25.0% |
| ! | TAGAAAGAGTAGAGAGTATA+GGG | + | chr1_2:71100759-71100778 | None:intergenic | 30.0% |
| ACTGTGATGAAGAAGAAAAA+TGG | - | chr1_2:71101047-71101066 | Msa0089460:three_prime_UTR | 30.0% | |
| CTGTGATGAAGAAGAAAAAT+GGG | - | chr1_2:71101048-71101067 | Msa0089460:three_prime_UTR | 30.0% | |
| TAACAAAAGCAGAGGTAAAA+GGG | + | chr1_2:71101158-71101177 | None:intergenic | 30.0% | |
| TTCTTGTTGAGTTATCTCTT+TGG | + | chr1_2:71101227-71101246 | None:intergenic | 30.0% | |
| TCAACAAGAAACATATTACG+AGG | - | chr1_2:71101237-71101256 | Msa0089460:exon | 30.0% | |
| CTTAAAGTCAATGCTCATTA+TGG | - | chr1_2:71101325-71101344 | Msa0089460:CDS | 30.0% | |
| ! | TTGCTGTTAACTATCTTGAT+AGG | - | chr1_2:71101371-71101390 | Msa0089460:CDS | 30.0% |
| !! | ATGGTTTCTCTTTTTGGAAA+TGG | + | chr1_2:71101411-71101430 | None:intergenic | 30.0% |
| ATTTCCAAAAAGAGAAACCA+TGG | - | chr1_2:71101410-71101429 | Msa0089460:CDS | 30.0% | |
| TTAGAAGATAACGTACTTGA+AGG | + | chr1_2:71101513-71101532 | None:intergenic | 30.0% | |
| ! | CTTCTTCTATCTGTACTTTT+AGG | - | chr1_2:71101772-71101791 | Msa0089460:CDS | 30.0% |
| AACATAAAACATTGTAGCAG+TGG | + | chr1_2:71102007-71102026 | None:intergenic | 30.0% | |
| ATTGAACAGAGTGATGATAA+TGG | - | chr1_2:71102036-71102055 | Msa0089460:intron | 30.0% | |
| TAATGTTCTCAAAATCAGCA+AGG | - | chr1_2:71102083-71102102 | Msa0089460:CDS | 30.0% | |
| !!! | TGCATGTGTTTTTTGTTTAC+AGG | - | chr1_2:71102317-71102336 | Msa0089460:intron | 30.0% |
| TTTAAGAAGACCAAGAATCA+AGG | - | chr1_2:71102528-71102547 | Msa0089460:CDS | 30.0% | |
| ! | CATATTTTGTCCTTGATTCT+TGG | + | chr1_2:71102541-71102560 | None:intergenic | 30.0% |
| ! | AAATGAATTTGGGACATTGT+TGG | + | chr1_2:71102778-71102797 | None:intergenic | 30.0% |
| TTTACATGAATCTCTTGAAG+AGG | - | chr1_2:71102795-71102814 | Msa0089460:CDS | 30.0% | |
| AGATGATGATAGAGGATTAA+AGG | - | chr1_2:71102826-71102845 | Msa0089460:CDS | 30.0% | |
| ATGATAGAGGATTAAAGGAA+TGG | - | chr1_2:71102831-71102850 | Msa0089460:CDS | 30.0% | |
| TCTGATGAGTTAAAAAGGAA+AGG | - | chr1_2:71102860-71102879 | Msa0089460:CDS | 30.0% | |
| ! | GTTTGAAATATTTGGATGGA+TGG | - | chr1_2:71103092-71103111 | Msa0089460:five_prime_UTR | 30.0% |
| ! | ATTGGTAAAGAGATTTTGAG+TGG | + | chr1_2:71103164-71103183 | None:intergenic | 30.0% |
| AGACAGGAAGAAATAAAGAA+AGG | - | chr1_2:71103219-71103238 | Msa0089460:five_prime_UTR | 30.0% | |
| ! | CTAGAAAGAGTAGAGAGTAT+AGG | + | chr1_2:71100760-71100779 | None:intergenic | 35.0% |
| ATCTTCTTCAGTGAAGAAGA+GGG | + | chr1_2:71100956-71100975 | None:intergenic | 35.0% | |
| ! | AAGTGTGTTGTTGAAGTTGT+TGG | + | chr1_2:71101006-71101025 | None:intergenic | 35.0% |
| ! | AAATGGGAAGATGATGATGA+AGG | - | chr1_2:71101064-71101083 | Msa0089460:three_prime_UTR | 35.0% |
| CTAACAAAAGCAGAGGTAAA+AGG | + | chr1_2:71101159-71101178 | None:intergenic | 35.0% | |
| TTCTGTTCTAACAAAAGCAG+AGG | + | chr1_2:71101166-71101185 | None:intergenic | 35.0% | |
| GACTTTAAGCATCCATTCAA+CGG | + | chr1_2:71101314-71101333 | None:intergenic | 35.0% | |
| ! | TCATCCATGGTTTCTCTTTT+TGG | + | chr1_2:71101417-71101436 | None:intergenic | 35.0% |
| TGATTCTGTCAACACTGAAA+TGG | - | chr1_2:71101647-71101666 | Msa0089460:intron | 35.0% | |
| GATCACATTATAAGAAGGCT+TGG | - | chr1_2:71101703-71101722 | Msa0089460:intron | 35.0% | |
| ATCTTCATTGGGAGTTTCTT+AGG | - | chr1_2:71101737-71101756 | Msa0089460:intron | 35.0% | |
| TATCATCACTCTGTTCAATC+TGG | + | chr1_2:71102035-71102054 | None:intergenic | 35.0% | |
| GCTCATACACAATACACATA+TGG | + | chr1_2:71102201-71102220 | None:intergenic | 35.0% | |
| !!! | GATGCTGTTTTTAGTTCTGA+TGG | - | chr1_2:71102450-71102469 | Msa0089460:CDS | 35.0% |
| ! | TTCTTGGTCTTCTTAAACAC+AGG | + | chr1_2:71102525-71102544 | None:intergenic | 35.0% |
| ! | TGAATTTGTCACCGATTAAC+AGG | - | chr1_2:71102559-71102578 | Msa0089460:CDS | 35.0% |
| ! | GAATTTGTCACCGATTAACA+GGG | - | chr1_2:71102560-71102579 | Msa0089460:CDS | 35.0% |
| ! | AAAACGGATAGAGGGTTTTA+AGG | + | chr1_2:71102618-71102637 | None:intergenic | 35.0% |
| TAAAAAGGAAAGGACAGAGT+TGG | - | chr1_2:71102870-71102889 | Msa0089460:CDS | 35.0% | |
| CTTCTAGACCATACCAAATT+TGG | - | chr1_2:71102985-71103004 | Msa0089460:five_prime_UTR | 35.0% | |
| TGAAATATTTGGATGGATGG+TGG | - | chr1_2:71103095-71103114 | Msa0089460:five_prime_UTR | 35.0% | |
| ! | GTGATGATTTTCAGCTGAGT+GGG | + | chr1_2:71100710-71100729 | None:intergenic | 40.0% |
| ! | AGTGATGATTTTCAGCTGAG+TGG | + | chr1_2:71100711-71100730 | None:intergenic | 40.0% |
| AGAGAGAAGACAGAACAAAG+AGG | - | chr1_2:71100857-71100876 | Msa0089460:three_prime_UTR | 40.0% | |
| CATCTTCTTCAGTGAAGAAG+AGG | + | chr1_2:71100957-71100976 | None:intergenic | 40.0% | |
| CTCTTCTTCACTGAAGAAGA+TGG | - | chr1_2:71100955-71100974 | Msa0089460:three_prime_UTR | 40.0% | |
| ! | GGTGATTGTGATGATGATGA+TGG | + | chr1_2:71100985-71101004 | None:intergenic | 40.0% |
| GAAGGAGAAGTTGTAGATGA+AGG | - | chr1_2:71101082-71101101 | Msa0089460:three_prime_UTR | 40.0% | |
| ACTTGAAGGTCTAAGAGAAG+AGG | + | chr1_2:71101499-71101518 | None:intergenic | 40.0% | |
| GGCAAAGACTATTCAGAGAA+TGG | - | chr1_2:71101618-71101637 | Msa0089460:intron | 40.0% | |
| ! | AGAAAAGAGTGTGTTGTCAC+TGG | + | chr1_2:71101682-71101701 | None:intergenic | 40.0% |
| !! | ACAGAGTGATGATAATGGTG+TGG | - | chr1_2:71102041-71102060 | Msa0089460:intron | 40.0% |
| ! | CGAAAGTATGAAGAAATCCC+TGG | - | chr1_2:71102408-71102427 | Msa0089460:CDS | 40.0% |
| AAGGACAGAAAACGGATAGA+GGG | + | chr1_2:71102626-71102645 | None:intergenic | 40.0% | |
| AAAGGACAGAAAACGGATAG+AGG | + | chr1_2:71102627-71102646 | None:intergenic | 40.0% | |
| ! | AATATTTGGATGGATGGTGG+TGG | - | chr1_2:71103098-71103117 | Msa0089460:five_prime_UTR | 40.0% |
| ! | ATATTTGGATGGATGGTGGT+GGG | - | chr1_2:71103099-71103118 | Msa0089460:five_prime_UTR | 40.0% |
| TTTGAGTGGACCATTTGGTT+GGG | + | chr1_2:71103150-71103169 | None:intergenic | 40.0% | |
| !! | TTTTGAGTGGACCATTTGGT+TGG | + | chr1_2:71103151-71103170 | None:intergenic | 40.0% |
| !! | GAGATTTTGAGTGGACCATT+TGG | + | chr1_2:71103155-71103174 | None:intergenic | 40.0% |
| ! | AGAGTAGAGAGTATAGGGAG+AGG | + | chr1_2:71100754-71100773 | None:intergenic | 45.0% |
| AAGAGGAAAAGAGAGAGCGA+TGG | - | chr1_2:71100874-71100893 | Msa0089460:three_prime_UTR | 45.0% | |
| GCAACAAGCTGAATCATCCA+TGG | + | chr1_2:71101430-71101449 | None:intergenic | 45.0% | |
| TGGTTGTGTTCCTTCTGTGT+TGG | - | chr1_2:71101981-71102000 | Msa0089460:intron | 45.0% | |
| ACAGCATCAATTACGCCACT+TGG | + | chr1_2:71102438-71102457 | None:intergenic | 45.0% | |
| !! | CTGATGGTTCTAACGATTCG+TGG | - | chr1_2:71102466-71102485 | Msa0089460:CDS | 45.0% |
| TTCTAACGATTCGTGGACAG+TGG | - | chr1_2:71102473-71102492 | Msa0089460:CDS | 45.0% | |
| TCTAACGATTCGTGGACAGT+GGG | - | chr1_2:71102474-71102493 | Msa0089460:CDS | 45.0% | |
| CTTCTTAAACACAGGCTCTG+AGG | + | chr1_2:71102517-71102536 | None:intergenic | 45.0% | |
| CCGACAATGACCCTGTTAAT+CGG | + | chr1_2:71102573-71102592 | None:intergenic | 45.0% | |
| CCGATTAACAGGGTCATTGT+CGG | - | chr1_2:71102570-71102589 | Msa0089460:CDS | 45.0% | |
| !!! | GTTTTAAGGAGAGGTTGCAG+TGG | + | chr1_2:71102604-71102623 | None:intergenic | 45.0% |
| !!! | GGATAGAGGGTTTTAAGGAG+AGG | + | chr1_2:71102613-71102632 | None:intergenic | 45.0% |
| TGAATCTCTTGAAGAGGCAG+TGG | - | chr1_2:71102801-71102820 | Msa0089460:CDS | 45.0% | |
| CAGTGGCAAGATGATGATAG+AGG | - | chr1_2:71102818-71102837 | Msa0089460:CDS | 45.0% | |
| ! | TCAGTGAAGAAGAGGGTGTG+TGG | + | chr1_2:71100949-71100968 | None:intergenic | 50.0% |
| GCAAGGTCAGTAGTAGTAGC+TGG | - | chr1_2:71102100-71102119 | Msa0089460:CDS | 50.0% | |
| GAAATCCCTGGTAGTCCAAG+TGG | - | chr1_2:71102420-71102439 | Msa0089460:CDS | 50.0% | |
| TTACGCCACTTGGACTACCA+GGG | + | chr1_2:71102428-71102447 | None:intergenic | 50.0% | |
| ATTACGCCACTTGGACTACC+AGG | + | chr1_2:71102429-71102448 | None:intergenic | 50.0% | |
| AGATGTGCGACCCAACCAAA+TGG | - | chr1_2:71103137-71103156 | Msa0089460:five_prime_UTR | 50.0% | |
| CATTCAACGGCTTCACGACG+TGG | + | chr1_2:71101301-71101320 | None:intergenic | 55.0% | |
| CACGTCGTGAAGCCGTTGAA+TGG | - | chr1_2:71101299-71101318 | Msa0089460:CDS | 55.0% | |
| GTAGCAGTGGCCAACACAGA+AGG | + | chr1_2:71101994-71102013 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71100623 | 71103245 | 71100623 | ID=Msa0089460;Name=Msa0089460 |
| chr1_2 | mRNA | 71100623 | 71103245 | 71100623 | ID=Msa0089460-mRNA-1;Parent=Msa0089460;Name=Msa0089460-mRNA-1;_AED=0.05;_eAED=0.05;_QI=351|1|1|1|1|1|4|625|387 |
| chr1_2 | exon | 71100623 | 71101529 | 71100623 | ID=Msa0089460-mRNA-1:exon:24491;Parent=Msa0089460-mRNA-1 |
| chr1_2 | exon | 71101764 | 71101900 | 71101764 | ID=Msa0089460-mRNA-1:exon:24490;Parent=Msa0089460-mRNA-1 |
| chr1_2 | exon | 71102075 | 71102276 | 71102075 | ID=Msa0089460-mRNA-1:exon:24489;Parent=Msa0089460-mRNA-1 |
| chr1_2 | exon | 71102352 | 71103245 | 71102352 | ID=Msa0089460-mRNA-1:exon:24488;Parent=Msa0089460-mRNA-1 |
| chr1_2 | five_prime_UTR | 71102895 | 71103245 | 71102895 | ID=Msa0089460-mRNA-1:five_prime_utr;Parent=Msa0089460-mRNA-1 |
| chr1_2 | CDS | 71102352 | 71102894 | 71102352 | ID=Msa0089460-mRNA-1:cds;Parent=Msa0089460-mRNA-1 |
| chr1_2 | CDS | 71102075 | 71102276 | 71102075 | ID=Msa0089460-mRNA-1:cds;Parent=Msa0089460-mRNA-1 |
| chr1_2 | CDS | 71101764 | 71101900 | 71101764 | ID=Msa0089460-mRNA-1:cds;Parent=Msa0089460-mRNA-1 |
| chr1_2 | CDS | 71101248 | 71101529 | 71101248 | ID=Msa0089460-mRNA-1:cds;Parent=Msa0089460-mRNA-1 |
| chr1_2 | three_prime_UTR | 71100623 | 71101247 | 71100623 | ID=Msa0089460-mRNA-1:three_prime_utr;Parent=Msa0089460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
