AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0432010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432010 MtrunA17_Chr3g0136871 97.778 180 4 0 1 180 1 180 1.33e-128 358
Msa0432010 MtrunA17_Chr7g0256441 87.273 165 4 1 1 165 1 148 1.94e-99 283
Msa0432010 MtrunA17_Chr1g0150131 66.897 145 44 2 7 147 4 148 8.59e-67 202
Msa0432010 MtrunA17_Chr8g0360371 49.630 135 59 4 12 142 5 134 1.89e-37 130
Msa0432010 MtrunA17_Chr4g0041811 49.587 121 60 1 11 131 16 135 2.92e-36 125
Msa0432010 MtrunA17_Chr2g0317231 52.137 117 53 2 12 128 10 123 8.20e-35 129
Msa0432010 MtrunA17_Chr4g0039721 39.459 185 93 6 1 176 1 175 1.78e-34 119
Msa0432010 MtrunA17_Chr2g0331181 44.928 138 68 5 23 157 23 155 3.14e-34 119
Msa0432010 MtrunA17_Chr2g0324721 43.210 162 77 5 10 159 2 160 6.51e-34 119
Msa0432010 MtrunA17_Chr4g0062341 38.122 181 92 7 8 179 7 176 5.28e-33 116
Msa0432010 MtrunA17_Chr4g0062311 38.122 181 92 7 8 179 7 176 5.28e-33 116
Msa0432010 MtrunA17_Chr6g0458331 50.467 107 49 3 23 128 33 136 1.28e-30 109
Msa0432010 MtrunA17_Chr2g0319611 50.926 108 50 3 24 129 23 129 1.97e-30 111
Msa0432010 MtrunA17_Chr4g0040291 41.420 169 82 4 24 179 22 186 5.06e-30 108
Msa0432010 MtrunA17_Chr2g0324711 41.379 174 84 6 12 173 7 174 7.20e-29 109
Msa0432010 MtrunA17_Chr8g0385021 41.104 163 76 4 14 158 11 171 1.89e-27 104
Msa0432010 MtrunA17_Chr4g0073901 40.708 113 67 0 15 127 17 129 3.69e-27 101
Msa0432010 MtrunA17_Chr2g0323021 35.811 148 86 4 14 157 12 154 1.32e-24 95.5
Msa0432010 MtrunA17_Chr8g0385031 45.614 114 60 2 14 127 11 122 2.92e-24 96.3
Msa0432010 MtrunA17_Chr4g0073921 40.496 121 67 3 12 128 11 130 9.75e-24 94.4
Msa0432010 MtrunA17_Chr8g0385041 40.000 115 65 3 29 143 27 137 4.23e-21 88.2
Msa0432010 MtrunA17_Chr1g0188981 36.735 98 61 1 31 127 32 129 1.70e-20 84.0
Msa0432010 MtrunA17_Chr3g0127521 44.444 99 53 2 63 160 75 172 1.51e-19 83.6
Msa0432010 MtrunA17_Chr8g0335531 32.500 160 93 5 5 155 2 155 8.31e-19 79.7
Msa0432010 MtrunA17_Chr8g0335571 39.344 122 66 4 10 129 7 122 1.11e-18 79.3
Msa0432010 MtrunA17_Chr4g0064041 38.144 97 60 0 31 127 194 290 1.82e-18 81.3
Msa0432010 MtrunA17_Chr4g0064041 34.058 138 83 2 12 144 8 142 2.03e-17 78.6
Msa0432010 MtrunA17_Chr8g0387804 36.792 106 65 2 22 127 24 127 2.68e-18 76.6
Msa0432010 MtrunA17_Chr6g0481491 36.441 118 69 3 17 134 18 129 6.41e-17 75.1
Msa0432010 MtrunA17_Chr6g0453921 31.818 176 98 6 3 170 8 169 7.11e-17 74.3
Msa0432010 MtrunA17_Chr2g0306461 41.346 104 58 3 24 127 25 125 1.11e-16 74.3
Msa0432010 MtrunA17_Chr6g0459441 40.385 104 57 3 24 127 23 121 1.27e-16 73.6
Msa0432010 MtrunA17_Chr5g0394321 28.571 140 90 3 48 180 44 180 1.42e-16 73.6
Msa0432010 MtrunA17_Chr4g0033131 31.481 162 94 5 22 179 23 171 1.94e-16 72.8
Msa0432010 MtrunA17_Chr4g0033531 31.481 162 94 5 22 179 23 171 1.94e-16 72.8
Msa0432010 MtrunA17_Chr4g0064031 36.458 96 59 2 24 117 25 120 3.69e-16 72.0
Msa0432010 MtrunA17_Chr1g0205701 28.986 138 85 2 48 174 43 178 7.02e-16 71.6
Msa0432010 MtrunA17_Chr1g0196801 30.357 168 97 6 23 179 19 177 2.34e-15 70.1
Msa0432010 MtrunA17_Chr7g0253631 34.109 129 75 3 8 131 2 125 2.35e-15 71.6
Msa0432010 MtrunA17_Chr8g0379081 44.578 83 38 2 74 156 1 75 2.99e-15 68.6
Msa0432010 MtrunA17_Chr3g0132431 37.500 96 58 2 47 142 41 134 3.74e-14 67.0
Msa0432010 MtrunA17_Chr7g0253641 33.600 125 72 4 13 132 7 125 4.36e-14 67.8
Msa0432010 MtrunA17_Chr3g0132411 39.506 81 48 1 47 127 80 159 1.11e-13 65.5
Msa0432010 MtrunA17_Chr7g0253761 29.299 157 101 3 8 159 2 153 1.25e-13 65.5
Msa0432010 MtrunA17_Chr3g0132441 40.741 81 47 1 47 127 41 120 1.41e-13 65.9
Msa0432010 MtrunA17_Chr6g0483981 32.468 154 97 3 12 159 8 160 3.49e-13 66.6
Msa0432010 MtrunA17_Chr2g0289741 31.818 132 83 3 49 179 44 169 4.89e-13 63.9
Msa0432010 MtrunA17_Chr5g0440711 31.111 135 80 5 12 144 14 137 4.31e-12 60.8
Msa0432010 MtrunA17_Chr1g0185541 38.235 68 42 0 60 127 3 70 4.59e-12 58.9
Msa0432010 MtrunA17_Chr3g0132701 36.190 105 61 3 24 127 23 122 6.43e-12 61.6
Msa0432010 MtrunA17_Chr6g0453801 33.333 129 72 5 7 127 9 131 1.95e-11 59.7
Msa0432010 MtrunA17_Chr3g0132511 35.238 105 62 3 24 127 23 122 3.86e-11 59.7
Msa0432010 MtrunA17_Chr8g0380901 36.364 77 48 1 49 125 43 118 5.74e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0432010 AT2G25060.1 56.442 163 68 2 11 172 15 175 2.10e-61 188
Msa0432010 AT4G31840.1 54.386 171 69 4 8 172 2 169 7.53e-58 179
Msa0432010 AT5G25090.1 47.222 180 84 3 6 174 4 183 2.22e-51 163
Msa0432010 AT4G30590.1 55.556 126 51 1 12 132 8 133 3.53e-48 155
Msa0432010 AT5G57920.1 54.545 121 54 1 22 141 18 138 3.15e-46 150
Msa0432010 AT5G57920.3 54.545 121 54 1 22 141 50 170 3.53e-46 151
Msa0432010 AT5G57920.2 54.622 119 53 1 24 141 19 137 1.29e-45 148
Msa0432010 AT2G23990.1 48.077 156 68 3 1 155 1 144 4.51e-42 140
Msa0432010 AT2G23990.2 42.857 175 68 4 1 155 1 163 1.20e-37 129
Msa0432010 AT1G48940.1 40.116 172 97 4 11 180 10 177 4.15e-34 119
Msa0432010 AT3G18590.1 50.420 119 54 3 12 128 12 127 1.17e-33 118
Msa0432010 AT3G20570.1 34.884 172 83 3 12 156 15 184 2.47e-32 115
Msa0432010 AT4G27520.1 44.595 148 69 3 12 159 16 150 3.43e-31 115
Msa0432010 AT5G53870.2 44.079 152 68 5 11 155 7 148 3.59e-30 113
Msa0432010 AT5G53870.1 44.079 152 68 5 11 155 7 148 4.26e-30 113
Msa0432010 AT5G14345.1 46.429 112 57 2 36 146 24 133 3.11e-29 105
Msa0432010 AT4G28365.1 37.975 158 84 6 12 158 11 165 3.25e-27 102
Msa0432010 AT4G32490.1 39.416 137 75 4 3 134 2 135 9.69e-27 101
Msa0432010 AT1G79800.1 44.762 105 54 3 25 128 32 133 3.70e-26 99.4
Msa0432010 AT1G64640.1 33.571 140 89 2 4 140 6 144 1.23e-22 90.1
Msa0432010 AT2G31050.1 36.765 136 82 2 10 145 11 142 1.42e-21 87.4
Msa0432010 AT2G32300.1 35.417 144 83 4 18 160 17 151 2.85e-20 85.5
Msa0432010 AT2G32300.2 35.417 144 83 4 18 160 47 181 5.06e-20 85.1
Msa0432010 AT2G26720.1 32.353 136 88 2 10 145 11 142 5.49e-20 83.6
Msa0432010 AT5G07475.1 29.412 187 114 7 6 180 3 183 1.76e-18 79.3
Msa0432010 AT3G60270.1 37.374 99 57 2 31 129 29 122 5.55e-16 72.4
Msa0432010 AT5G26330.1 33.721 86 57 0 49 134 43 128 4.08e-15 70.1
Msa0432010 AT1G72230.1 37.755 98 51 2 39 127 21 117 5.90e-15 69.7
Msa0432010 AT3G17675.1 30.645 124 75 3 10 127 9 127 1.76e-14 67.0
Msa0432010 AT5G20230.1 31.034 116 74 2 31 141 28 142 1.59e-13 66.2
Msa0432010 AT1G45063.2 32.812 128 81 3 2 128 4 127 3.97e-13 66.2
Msa0432010 AT1G45063.2 34.694 98 61 2 31 127 152 247 9.65e-13 65.1
Msa0432010 AT1G45063.1 32.812 128 81 3 2 128 4 127 6.59e-13 66.2
Msa0432010 AT1G45063.1 34.694 98 61 2 31 127 152 247 1.57e-12 65.1
Msa0432010 AT2G27035.1 28.105 153 90 5 29 180 30 163 6.80e-13 63.5
Msa0432010 AT4G01380.1 34.545 110 68 4 35 142 79 186 8.06e-13 64.3
Msa0432010 AT3G27200.1 38.095 84 50 2 46 128 40 122 1.41e-12 63.2
Msa0432010 AT3G60280.1 37.374 99 57 3 31 129 27 120 1.43e-12 63.9
Msa0432010 AT2G44790.1 40.964 83 46 2 49 129 45 126 7.48e-12 61.6
Msa0432010 AT1G22480.1 39.024 82 49 1 54 135 41 121 6.21e-11 58.5

Find 62 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATCACCGCACCTAATT+AGG 0.210319 3_2:-84122595 Msa0432010:exon
AACTGGACTTGTGACTGTTC+TGG 0.274010 3_2:-84122649 Msa0432010:CDS
TTGTTCTTGTTCCTTCTCTT+TGG 0.278533 3_2:-84123193 Msa0432010:CDS
AACTTCACTATATCCTAATT+AGG 0.307719 3_2:+84122582 None:intergenic
AATAATAACTTGCTTGATAT+AGG 0.319142 3_2:-84122437 Msa0432010:three_prime_UTR
CCCATCATTGTAATGTTCAA+TGG 0.374125 3_2:+84122872 None:intergenic
CCATCATTGTAATGTTCAAT+GGG 0.379061 3_2:+84122873 None:intergenic
GGGACTGTTGGCTATTTATG+TGG 0.381502 3_2:-84122628 Msa0432010:CDS
GCTCCACTGATGAAGTAAAA+TGG 0.384841 3_2:+84122819 None:intergenic
ACTGGACTTGTGACTGTTCT+GGG 0.401738 3_2:-84122648 Msa0432010:CDS
ATTGTATTATTATTTATAGA+TGG 0.403303 3_2:+84123357 None:intergenic
CTCTGCAGCTAAGGAACTAT+TGG 0.408413 3_2:-84123167 Msa0432010:CDS
CCCATTGAACATTACAATGA+TGG 0.412359 3_2:-84122873 Msa0432010:CDS
TTTGCATTGATCTGGTTCCT+TGG 0.413913 3_2:+84123331 None:intergenic
AGGGGTGGTTTGCATTGATC+TGG 0.415179 3_2:+84123323 None:intergenic
TTCAAAGTCGGCGATCATCT+TGG 0.440071 3_2:-84123067 Msa0432010:intron
TGTCACTTTGCAAGCACAAA+GGG 0.448828 3_2:+84123304 None:intergenic
AAGTTATTATTCATAAGCTT+TGG 0.459492 3_2:+84122449 None:intergenic
TACTTCATCAGTGGAGCAAA+GGG 0.460490 3_2:-84122813 Msa0432010:CDS
GGACCTTCTTCCAACTCTGC+TGG 0.465938 3_2:+84122708 None:intergenic
AGTGCGCCGGTGTTGCGAAC+TGG 0.466338 3_2:-84122666 Msa0432010:CDS
CTTTGGTTTCTCTGCAGCTA+AGG 0.473136 3_2:-84123176 Msa0432010:CDS
CTGCTAGTTGGTGCAACAGC+TGG 0.474292 3_2:+84122687 None:intergenic
GGACTGTTGGCTATTTATGT+GGG 0.487905 3_2:-84122627 Msa0432010:CDS
AGTGAGTCTGCTTCAGATGA+TGG 0.493397 3_2:+84123115 None:intergenic
TGCACCATCTCCAGCAGAGT+TGG 0.499713 3_2:-84122718 Msa0432010:CDS
TCTTCCAACTCTGCTGGAGA+TGG 0.500018 3_2:+84122714 None:intergenic
TGTGACTGTTCTGGGACTGT+TGG 0.507080 3_2:-84122640 Msa0432010:CDS
AACTCTGCTGGAGATGGTGC+AGG 0.510903 3_2:+84122720 None:intergenic
TTTGCAGTTTGGAAATATGA+TGG 0.513645 3_2:-84122957 Msa0432010:intron
AGCAGACTCACTCAACCAAT+GGG 0.514967 3_2:-84123104 Msa0432010:CDS
AACACCGGCGCACTGCTAGT+TGG 0.529681 3_2:+84122675 None:intergenic
TCTCCAAAGAAAAGATCCAT+TGG 0.532263 3_2:-84122750 Msa0432010:CDS
CCATTGAACATTACAATGAT+GGG 0.540182 3_2:-84122872 Msa0432010:CDS
TTACTTCATCAGTGGAGCAA+AGG 0.544859 3_2:-84122814 Msa0432010:CDS
AAGCAGACTCACTCAACCAA+TGG 0.548958 3_2:-84123105 Msa0432010:CDS
TTCTTTCTGATAGCTGAATG+TGG 0.553596 3_2:+84123261 None:intergenic
GCAAAGGGACACTGTGAGCA+AGG 0.567702 3_2:-84122798 Msa0432010:CDS
AATAATAATACAATAATCCA+AGG 0.570368 3_2:-84123348 Msa0432010:five_prime_UTR
CTGATGAAGTAAAATGGTCC+AGG 0.572076 3_2:+84122825 None:intergenic
CAGTTTGGAAATATGATGGT+GGG 0.580211 3_2:-84122953 Msa0432010:CDS
TGCACCAACTAGCAGTGCGC+CGG 0.584450 3_2:-84122679 Msa0432010:CDS
GAAAAGTCTCGTTTCAAAGT+CGG 0.587560 3_2:-84123079 Msa0432010:CDS
TCTCCAGCAGAGTTGGAAGA+AGG 0.588093 3_2:-84122711 Msa0432010:CDS
ACAAGTCCAGTTCGCAACAC+CGG 0.589779 3_2:+84122660 None:intergenic
TTGTCACTTTGCAAGCACAA+AGG 0.591024 3_2:+84123303 None:intergenic
TGGTGCAGGTGAAACTCCAA+TGG 0.600203 3_2:+84122734 None:intergenic
GCAGTTTGGAAATATGATGG+TGG 0.604799 3_2:-84122954 Msa0432010:intron
CACTATATCCTAATTAGGTG+CGG 0.608986 3_2:+84122587 None:intergenic
AGGCAAGATAGATGCATGGA+AGG 0.615286 3_2:-84123140 Msa0432010:CDS
CTGCAGAGAAACCAAAGAGA+AGG 0.616684 3_2:+84123182 None:intergenic
AAGGTAAAGCTAGACAGACC+TGG 0.622619 3_2:-84122843 Msa0432010:CDS
CATCATTGTAATGTTCAATG+GGG 0.626069 3_2:+84122874 None:intergenic
GCAGCTAAGGAACTATTGGT+CGG 0.634929 3_2:-84123163 Msa0432010:CDS
ACTTTGCAAGCACAAAGGGG+TGG 0.644733 3_2:+84123308 None:intergenic
AGTTCTTGAGAACACAGCCA+TGG 0.674329 3_2:+84123231 None:intergenic
TCGGAGGCAAGATAGATGCA+TGG 0.675253 3_2:-84123144 Msa0432010:CDS
AGGACAAAAGCTGATTGTGG+TGG 0.679977 3_2:-84122778 Msa0432010:CDS
GTCACTTTGCAAGCACAAAG+GGG 0.685393 3_2:+84123305 None:intergenic
GCTAAGGAACTATTGGTCGG+AGG 0.690687 3_2:-84123160 Msa0432010:CDS
GCAAGGACAAAAGCTGATTG+TGG 0.718198 3_2:-84122781 Msa0432010:CDS
TTACAATGATGGGAACACGA+AGG 0.756088 3_2:-84122862 Msa0432010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGTATTATTATTTATAGA+TGG + chr3_2:84122372-84122391 None:intergenic 10.0%
!! ATTGTATTATTATTTATAGA+TGG + chr3_2:84122372-84122391 None:intergenic 10.0%
!! AATAATAATACAATAATCCA+AGG - chr3_2:84122378-84122397 Msa0432010:three_prime_UTR 15.0%
!! TATGAAAAATAACTTGATAT+AGG - chr3_2:84123351-84123370 Msa0432010:five_prime_UTR 15.0%
!! AATAATAATACAATAATCCA+AGG - chr3_2:84122378-84122397 Msa0432010:three_prime_UTR 15.0%
!! TATGAAAAATAACTTGATAT+AGG - chr3_2:84123351-84123370 Msa0432010:five_prime_UTR 15.0%
!!! GATTCATTATTTTTTTCCAA+AGG - chr3_2:84123197-84123216 Msa0432010:CDS 20.0%
!!! ATATCAAGTTTTTATTCCTT+TGG + chr3_2:84123216-84123235 None:intergenic 20.0%
!! AAGGAATAAAAACTTGATAT+AGG - chr3_2:84123216-84123235 Msa0432010:CDS 20.0%
!!! AAAAAATAATGAAGGTATTC+AGG + chr3_2:84123257-84123276 None:intergenic 20.0%
!! AAGTTATTATTCATAAGCTT+TGG + chr3_2:84123280-84123299 None:intergenic 20.0%
!!! AATAATAACTTGCTTGATAT+AGG - chr3_2:84123289-84123308 Msa0432010:five_prime_UTR 20.0%
!!! AAGTTATTTTTCATAAGCTT+TGG + chr3_2:84123346-84123365 None:intergenic 20.0%
!!! GATTCATTATTTTTTTCCAA+AGG - chr3_2:84123197-84123216 Msa0432010:CDS 20.0%
!!! ATATCAAGTTTTTATTCCTT+TGG + chr3_2:84123216-84123235 None:intergenic 20.0%
!! AAGGAATAAAAACTTGATAT+AGG - chr3_2:84123216-84123235 Msa0432010:CDS 20.0%
!!! AAAAAATAATGAAGGTATTC+AGG + chr3_2:84123257-84123276 None:intergenic 20.0%
!! AAGTTATTATTCATAAGCTT+TGG + chr3_2:84123280-84123299 None:intergenic 20.0%
!!! AATAATAACTTGCTTGATAT+AGG - chr3_2:84123289-84123308 Msa0432010:five_prime_UTR 20.0%
!!! AAGTTATTTTTCATAAGCTT+TGG + chr3_2:84123346-84123365 None:intergenic 20.0%
! AACTTCACTATATCCTAATT+AGG + chr3_2:84123147-84123166 None:intergenic 25.0%
!!! AGCTTTGGAAAAAATAATGA+AGG + chr3_2:84123265-84123284 None:intergenic 25.0%
! AACTTCACTATATCCTAATT+AGG + chr3_2:84123147-84123166 None:intergenic 25.0%
!!! AGCTTTGGAAAAAATAATGA+AGG + chr3_2:84123265-84123284 None:intergenic 25.0%
!!! TTTACCTTTGTTTTGCAGTT+TGG - chr3_2:84122758-84122777 Msa0432010:CDS 30.0%
ATTTCCAAACTGCAAAACAA+AGG + chr3_2:84122765-84122784 None:intergenic 30.0%
TTTGCAGTTTGGAAATATGA+TGG - chr3_2:84122769-84122788 Msa0432010:CDS 30.0%
CATCATTGTAATGTTCAATG+GGG + chr3_2:84122855-84122874 None:intergenic 30.0%
CCATCATTGTAATGTTCAAT+GGG + chr3_2:84122856-84122875 None:intergenic 30.0%
CCATTGAACATTACAATGAT+GGG - chr3_2:84122854-84122873 Msa0432010:CDS 30.0%
!! AGCTTTGGAAAAAACAATGA+AGG + chr3_2:84123331-84123350 None:intergenic 30.0%
!!! TTTACCTTTGTTTTGCAGTT+TGG - chr3_2:84122758-84122777 Msa0432010:CDS 30.0%
ATTTCCAAACTGCAAAACAA+AGG + chr3_2:84122765-84122784 None:intergenic 30.0%
TTTGCAGTTTGGAAATATGA+TGG - chr3_2:84122769-84122788 Msa0432010:CDS 30.0%
CATCATTGTAATGTTCAATG+GGG + chr3_2:84122855-84122874 None:intergenic 30.0%
CCATCATTGTAATGTTCAAT+GGG + chr3_2:84122856-84122875 None:intergenic 30.0%
CCATTGAACATTACAATGAT+GGG - chr3_2:84122854-84122873 Msa0432010:CDS 30.0%
!! AGCTTTGGAAAAAACAATGA+AGG + chr3_2:84123331-84123350 None:intergenic 30.0%
TTCTTTCTGATAGCTGAATG+TGG + chr3_2:84122468-84122487 None:intergenic 35.0%
!! TCAGAAAGAAAAAAGCACCA+TGG - chr3_2:84122478-84122497 Msa0432010:three_prime_UTR 35.0%
TTGTTCTTGTTCCTTCTCTT+TGG - chr3_2:84122533-84122552 Msa0432010:three_prime_UTR 35.0%
GAAAAGTCTCGTTTCAAAGT+CGG - chr3_2:84122647-84122666 Msa0432010:CDS 35.0%
AGAAAAAGATGTGTCAGTGA+TGG + chr3_2:84122738-84122757 None:intergenic 35.0%
CAGTTTGGAAATATGATGGT+GGG - chr3_2:84122773-84122792 Msa0432010:CDS 35.0%
CCCATTGAACATTACAATGA+TGG - chr3_2:84122853-84122872 Msa0432010:CDS 35.0%
CCCATCATTGTAATGTTCAA+TGG + chr3_2:84122857-84122876 None:intergenic 35.0%
TCTCCAAAGAAAAGATCCAT+TGG - chr3_2:84122976-84122995 Msa0432010:intron 35.0%
! ACTCCAATGGATCTTTTCTT+TGG + chr3_2:84122982-84123001 None:intergenic 35.0%
CACTATATCCTAATTAGGTG+CGG + chr3_2:84123142-84123161 None:intergenic 35.0%
TTCTTTCTGATAGCTGAATG+TGG + chr3_2:84122468-84122487 None:intergenic 35.0%
!! TCAGAAAGAAAAAAGCACCA+TGG - chr3_2:84122478-84122497 Msa0432010:three_prime_UTR 35.0%
TTGTTCTTGTTCCTTCTCTT+TGG - chr3_2:84122533-84122552 Msa0432010:three_prime_UTR 35.0%
GAAAAGTCTCGTTTCAAAGT+CGG - chr3_2:84122647-84122666 Msa0432010:CDS 35.0%
AGAAAAAGATGTGTCAGTGA+TGG + chr3_2:84122738-84122757 None:intergenic 35.0%
CAGTTTGGAAATATGATGGT+GGG - chr3_2:84122773-84122792 Msa0432010:CDS 35.0%
CCCATTGAACATTACAATGA+TGG - chr3_2:84122853-84122872 Msa0432010:CDS 35.0%
CCCATCATTGTAATGTTCAA+TGG + chr3_2:84122857-84122876 None:intergenic 35.0%
TCTCCAAAGAAAAGATCCAT+TGG - chr3_2:84122976-84122995 Msa0432010:intron 35.0%
! ACTCCAATGGATCTTTTCTT+TGG + chr3_2:84122982-84123001 None:intergenic 35.0%
CACTATATCCTAATTAGGTG+CGG + chr3_2:84123142-84123161 None:intergenic 35.0%
! TTTGCATTGATCTGGTTCCT+TGG + chr3_2:84122398-84122417 None:intergenic 40.0%
!! TGTCACTTTGCAAGCACAAA+GGG + chr3_2:84122425-84122444 None:intergenic 40.0%
!! TTGTCACTTTGCAAGCACAA+AGG + chr3_2:84122426-84122445 None:intergenic 40.0%
GCAGTTTGGAAATATGATGG+TGG - chr3_2:84122772-84122791 Msa0432010:CDS 40.0%
! TTACAATGATGGGAACACGA+AGG - chr3_2:84122864-84122883 Msa0432010:CDS 40.0%
CTGATGAAGTAAAATGGTCC+AGG + chr3_2:84122904-84122923 None:intergenic 40.0%
! GGACCATTTTACTTCATCAG+TGG - chr3_2:84122904-84122923 Msa0432010:CDS 40.0%
GCTCCACTGATGAAGTAAAA+TGG + chr3_2:84122910-84122929 None:intergenic 40.0%
TTACTTCATCAGTGGAGCAA+AGG - chr3_2:84122912-84122931 Msa0432010:CDS 40.0%
TACTTCATCAGTGGAGCAAA+GGG - chr3_2:84122913-84122932 Msa0432010:CDS 40.0%
! GGACTGTTGGCTATTTATGT+GGG - chr3_2:84123099-84123118 Msa0432010:CDS 40.0%
ATGAATCACCGCACCTAATT+AGG - chr3_2:84123131-84123150 Msa0432010:CDS 40.0%
! TTTGCATTGATCTGGTTCCT+TGG + chr3_2:84122398-84122417 None:intergenic 40.0%
!! TGTCACTTTGCAAGCACAAA+GGG + chr3_2:84122425-84122444 None:intergenic 40.0%
!! TTGTCACTTTGCAAGCACAA+AGG + chr3_2:84122426-84122445 None:intergenic 40.0%
GCAGTTTGGAAATATGATGG+TGG - chr3_2:84122772-84122791 Msa0432010:CDS 40.0%
! TTACAATGATGGGAACACGA+AGG - chr3_2:84122864-84122883 Msa0432010:CDS 40.0%
CTGATGAAGTAAAATGGTCC+AGG + chr3_2:84122904-84122923 None:intergenic 40.0%
! GGACCATTTTACTTCATCAG+TGG - chr3_2:84122904-84122923 Msa0432010:CDS 40.0%
GCTCCACTGATGAAGTAAAA+TGG + chr3_2:84122910-84122929 None:intergenic 40.0%
TTACTTCATCAGTGGAGCAA+AGG - chr3_2:84122912-84122931 Msa0432010:CDS 40.0%
TACTTCATCAGTGGAGCAAA+GGG - chr3_2:84122913-84122932 Msa0432010:CDS 40.0%
! GGACTGTTGGCTATTTATGT+GGG - chr3_2:84123099-84123118 Msa0432010:CDS 40.0%
ATGAATCACCGCACCTAATT+AGG - chr3_2:84123131-84123150 Msa0432010:CDS 40.0%
! GTCACTTTGCAAGCACAAAG+GGG + chr3_2:84122424-84122443 None:intergenic 45.0%
AGTTCTTGAGAACACAGCCA+TGG + chr3_2:84122498-84122517 None:intergenic 45.0%
CTGCAGAGAAACCAAAGAGA+AGG + chr3_2:84122547-84122566 None:intergenic 45.0%
! CTTTGGTTTCTCTGCAGCTA+AGG - chr3_2:84122550-84122569 Msa0432010:three_prime_UTR 45.0%
CTCTGCAGCTAAGGAACTAT+TGG - chr3_2:84122559-84122578 Msa0432010:three_prime_UTR 45.0%
GCAGCTAAGGAACTATTGGT+CGG - chr3_2:84122563-84122582 Msa0432010:three_prime_UTR 45.0%
AGGCAAGATAGATGCATGGA+AGG - chr3_2:84122586-84122605 Msa0432010:three_prime_UTR 45.0%
AGTGAGTCTGCTTCAGATGA+TGG + chr3_2:84122614-84122633 None:intergenic 45.0%
AAGCAGACTCACTCAACCAA+TGG - chr3_2:84122621-84122640 Msa0432010:CDS 45.0%
AGCAGACTCACTCAACCAAT+GGG - chr3_2:84122622-84122641 Msa0432010:CDS 45.0%
! AACGAGACTTTTCTGCCCAT+TGG + chr3_2:84122640-84122659 None:intergenic 45.0%
TTCAAAGTCGGCGATCATCT+TGG - chr3_2:84122659-84122678 Msa0432010:CDS 45.0%
AAGGTAAAGCTAGACAGACC+TGG - chr3_2:84122883-84122902 Msa0432010:CDS 45.0%
GCAAGGACAAAAGCTGATTG+TGG - chr3_2:84122945-84122964 Msa0432010:CDS 45.0%
AGGACAAAAGCTGATTGTGG+TGG - chr3_2:84122948-84122967 Msa0432010:CDS 45.0%
AACTGGACTTGTGACTGTTC+TGG - chr3_2:84123077-84123096 Msa0432010:CDS 45.0%
ACTGGACTTGTGACTGTTCT+GGG - chr3_2:84123078-84123097 Msa0432010:CDS 45.0%
! GGGACTGTTGGCTATTTATG+TGG - chr3_2:84123098-84123117 Msa0432010:CDS 45.0%
! GTCACTTTGCAAGCACAAAG+GGG + chr3_2:84122424-84122443 None:intergenic 45.0%
AGTTCTTGAGAACACAGCCA+TGG + chr3_2:84122498-84122517 None:intergenic 45.0%
CTGCAGAGAAACCAAAGAGA+AGG + chr3_2:84122547-84122566 None:intergenic 45.0%
! CTTTGGTTTCTCTGCAGCTA+AGG - chr3_2:84122550-84122569 Msa0432010:three_prime_UTR 45.0%
CTCTGCAGCTAAGGAACTAT+TGG - chr3_2:84122559-84122578 Msa0432010:three_prime_UTR 45.0%
GCAGCTAAGGAACTATTGGT+CGG - chr3_2:84122563-84122582 Msa0432010:three_prime_UTR 45.0%
AGGCAAGATAGATGCATGGA+AGG - chr3_2:84122586-84122605 Msa0432010:three_prime_UTR 45.0%
AGTGAGTCTGCTTCAGATGA+TGG + chr3_2:84122614-84122633 None:intergenic 45.0%
AAGCAGACTCACTCAACCAA+TGG - chr3_2:84122621-84122640 Msa0432010:CDS 45.0%
AGCAGACTCACTCAACCAAT+GGG - chr3_2:84122622-84122641 Msa0432010:CDS 45.0%
! AACGAGACTTTTCTGCCCAT+TGG + chr3_2:84122640-84122659 None:intergenic 45.0%
TTCAAAGTCGGCGATCATCT+TGG - chr3_2:84122659-84122678 Msa0432010:CDS 45.0%
AAGGTAAAGCTAGACAGACC+TGG - chr3_2:84122883-84122902 Msa0432010:CDS 45.0%
GCAAGGACAAAAGCTGATTG+TGG - chr3_2:84122945-84122964 Msa0432010:CDS 45.0%
AGGACAAAAGCTGATTGTGG+TGG - chr3_2:84122948-84122967 Msa0432010:CDS 45.0%
AACTGGACTTGTGACTGTTC+TGG - chr3_2:84123077-84123096 Msa0432010:CDS 45.0%
ACTGGACTTGTGACTGTTCT+GGG - chr3_2:84123078-84123097 Msa0432010:CDS 45.0%
! GGGACTGTTGGCTATTTATG+TGG - chr3_2:84123098-84123117 Msa0432010:CDS 45.0%
! AGGGGTGGTTTGCATTGATC+TGG + chr3_2:84122406-84122425 None:intergenic 50.0%
ACTTTGCAAGCACAAAGGGG+TGG + chr3_2:84122421-84122440 None:intergenic 50.0%
GCTAAGGAACTATTGGTCGG+AGG - chr3_2:84122566-84122585 Msa0432010:three_prime_UTR 50.0%
TCGGAGGCAAGATAGATGCA+TGG - chr3_2:84122582-84122601 Msa0432010:three_prime_UTR 50.0%
TGGTGCAGGTGAAACTCCAA+TGG + chr3_2:84122995-84123014 None:intergenic 50.0%
TCTTCCAACTCTGCTGGAGA+TGG + chr3_2:84123015-84123034 None:intergenic 50.0%
TCTCCAGCAGAGTTGGAAGA+AGG - chr3_2:84123015-84123034 Msa0432010:intron 50.0%
ACAAGTCCAGTTCGCAACAC+CGG + chr3_2:84123069-84123088 None:intergenic 50.0%
!! TGTGACTGTTCTGGGACTGT+TGG - chr3_2:84123086-84123105 Msa0432010:CDS 50.0%
! AGGGGTGGTTTGCATTGATC+TGG + chr3_2:84122406-84122425 None:intergenic 50.0%
ACTTTGCAAGCACAAAGGGG+TGG + chr3_2:84122421-84122440 None:intergenic 50.0%
GCTAAGGAACTATTGGTCGG+AGG - chr3_2:84122566-84122585 Msa0432010:three_prime_UTR 50.0%
TCGGAGGCAAGATAGATGCA+TGG - chr3_2:84122582-84122601 Msa0432010:three_prime_UTR 50.0%
TGGTGCAGGTGAAACTCCAA+TGG + chr3_2:84122995-84123014 None:intergenic 50.0%
TCTTCCAACTCTGCTGGAGA+TGG + chr3_2:84123015-84123034 None:intergenic 50.0%
TCTCCAGCAGAGTTGGAAGA+AGG - chr3_2:84123015-84123034 Msa0432010:intron 50.0%
ACAAGTCCAGTTCGCAACAC+CGG + chr3_2:84123069-84123088 None:intergenic 50.0%
!! TGTGACTGTTCTGGGACTGT+TGG - chr3_2:84123086-84123105 Msa0432010:CDS 50.0%
GCAAAGGGACACTGTGAGCA+AGG - chr3_2:84122928-84122947 Msa0432010:CDS 55.0%
AACTCTGCTGGAGATGGTGC+AGG + chr3_2:84123009-84123028 None:intergenic 55.0%
TGCACCATCTCCAGCAGAGT+TGG - chr3_2:84123008-84123027 Msa0432010:intron 55.0%
GGACCTTCTTCCAACTCTGC+TGG + chr3_2:84123021-84123040 None:intergenic 55.0%
! CTGCTAGTTGGTGCAACAGC+TGG + chr3_2:84123042-84123061 None:intergenic 55.0%
GCAAAGGGACACTGTGAGCA+AGG - chr3_2:84122928-84122947 Msa0432010:CDS 55.0%
AACTCTGCTGGAGATGGTGC+AGG + chr3_2:84123009-84123028 None:intergenic 55.0%
TGCACCATCTCCAGCAGAGT+TGG - chr3_2:84123008-84123027 Msa0432010:intron 55.0%
GGACCTTCTTCCAACTCTGC+TGG + chr3_2:84123021-84123040 None:intergenic 55.0%
! CTGCTAGTTGGTGCAACAGC+TGG + chr3_2:84123042-84123061 None:intergenic 55.0%
TGCACCAACTAGCAGTGCGC+CGG - chr3_2:84123047-84123066 Msa0432010:intron 60.0%
AACACCGGCGCACTGCTAGT+TGG + chr3_2:84123054-84123073 None:intergenic 60.0%
TGCACCAACTAGCAGTGCGC+CGG - chr3_2:84123047-84123066 Msa0432010:intron 60.0%
AACACCGGCGCACTGCTAGT+TGG + chr3_2:84123054-84123073 None:intergenic 60.0%
!! AGTGCGCCGGTGTTGCGAAC+TGG - chr3_2:84123060-84123079 Msa0432010:intron 65.0%
!! AGTGCGCCGGTGTTGCGAAC+TGG - chr3_2:84123060-84123079 Msa0432010:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 84122362 84123386 84122362 ID=Msa0432010;Name=Msa0432010
chr3_2 mRNA 84122362 84123386 84122362 ID=Msa0432010-mRNA-1;Parent=Msa0432010;Name=Msa0432010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=135|1|1|1|1|1|2|252|180
chr3_2 exon 84122362 84122972 84122362 ID=Msa0432010-mRNA-1:exon:23722;Parent=Msa0432010-mRNA-1
chr3_2 exon 84123068 84123386 84123068 ID=Msa0432010-mRNA-1:exon:23721;Parent=Msa0432010-mRNA-1
chr3_2 five_prime_UTR 84123252 84123386 84123252 ID=Msa0432010-mRNA-1:five_prime_utr;Parent=Msa0432010-mRNA-1
chr3_2 CDS 84123068 84123251 84123068 ID=Msa0432010-mRNA-1:cds;Parent=Msa0432010-mRNA-1
chr3_2 CDS 84122614 84122972 84122614 ID=Msa0432010-mRNA-1:cds;Parent=Msa0432010-mRNA-1
chr3_2 three_prime_UTR 84122362 84122613 84122362 ID=Msa0432010-mRNA-1:three_prime_utr;Parent=Msa0432010-mRNA-1
Gene Sequence

>Msa0432010

ATGGCTGTGTTCTCAAGAACTGCTTCTGCTTCTCTATTGTTCTTGTTCCTTCTCTTTGGTTTCTCTGCAGCTAAGGAACTATTGGTCGGAGGCAAGATAGATGCATGGAAGGTTCCATCATCTGAAGCAGACTCACTCAACCAATGGGCAGAAAAGTCTCGTTTCAAAGTCGGCGATCATCTTGTTTGGAAATATGATGGTGGGAAAGACTCAGTTTTGCAAGTAAACAAAGAAGATTATGCTAATTGCAACAGCTCAAACCCCATTGAACATTACAATGATGGGAACACGAAGGTAAAGCTAGACAGACCTGGACCATTTTACTTCATCAGTGGAGCAAAGGGACACTGTGAGCAAGGACAAAAGCTGATTGTGGTGGTTATGTCTCCAAAGAAAAGATCCATTGGAGTTTCACCTGCACCATCTCCAGCAGAGTTGGAAGAAGGTCCAGCTGTTGCACCAACTAGCAGTGCGCCGGTGTTGCGAACTGGACTTGTGACTGTTCTGGGACTGTTGGCTATTTATGTGGGTTTTCTCATATGA

Protein sequence

>Msa0432010

MAVFSRTASASLLFLFLLFGFSAAKELLVGGKIDAWKVPSSEADSLNQWAEKSRFKVGDHLVWKYDGGKDSVLQVNKEDYANCNSSNPIEHYNDGNTKVKLDRPGPFYFISGAKGHCEQGQKLIVVVMSPKKRSIGVSPAPSPAELEEGPAVAPTSSAPVLRTGLVTVLGLLAIYVGFLI*