AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0131700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131700 MtrunA17_Chr1g0192541 99.437 533 3 0 1 533 1 533 0.0 1095
Msa0131700 MtrunA17_Chr7g0271871 88.910 532 59 0 1 532 1 532 0.0 987
Msa0131700 MtrunA17_Chr2g0294881 86.278 532 69 3 1 531 1 529 0.0 942
Msa0131700 MtrunA17_Chr4g0068051 73.655 539 123 6 1 531 1 528 0.0 791
Msa0131700 MtrunA17_Chr4g0074371 80.751 426 82 0 79 504 1 426 0.0 731
Msa0131700 MtrunA17_Chr4g0075701 73.363 443 114 3 70 511 3 442 0.0 668
Msa0131700 MtrunA17_Chr4g0075691 75.587 426 103 1 83 507 2 427 0.0 652
Msa0131700 MtrunA17_Chr8g0346871 74.057 424 109 1 110 533 15 437 0.0 642
Msa0131700 MtrunA17_Chr4g0074081 69.481 462 103 3 79 504 1 460 0.0 628
Msa0131700 MtrunA17_Chr1g0174791 75.000 300 72 3 208 504 1 300 3.01e-155 445
Msa0131700 MtrunA17_Chr1g0174791 26.047 215 145 6 108 314 30 238 9.45e-11 63.2
Msa0131700 MtrunA17_Chr7g0271821 45.389 553 245 13 1 499 1 550 1.27e-141 420
Msa0131700 MtrunA17_Chr7g0272761 45.674 497 230 12 14 496 15 485 3.71e-119 360
Msa0131700 MtrunA17_Chr7g0271831 48.687 419 190 9 85 499 7 404 5.48e-113 341
Msa0131700 MtrunA17_Chr4g0004921 63.139 274 51 4 261 532 1 226 2.02e-109 325
Msa0131700 MtrunA17_Chr4g0071961 77.027 148 34 0 364 511 2 149 4.41e-75 237
Msa0131700 MtrunA17_Chr4g0075651 78.723 141 30 0 366 506 8 148 2.38e-73 229
Msa0131700 MtrunA17_Chr1g0181541 29.231 520 319 14 14 499 10 514 1.39e-51 184
Msa0131700 MtrunA17_Chr4g0075601 60.284 141 43 1 364 491 1 141 6.08e-51 171
Msa0131700 MtrunA17_Chr4g0004931 59.722 144 44 1 110 253 11 140 5.21e-48 163
Msa0131700 MtrunA17_Chr4g0075621 69.307 101 31 0 79 179 1 101 3.67e-43 149
Msa0131700 MtrunA17_Chr4g0071971 73.077 104 27 1 263 365 10 113 7.99e-42 147
Msa0131700 MtrunA17_Chr4g0071981 65.854 82 24 1 83 160 2 83 7.40e-28 107
Msa0131700 MtrunA17_Chr4g0075641 43.537 147 28 2 276 367 2 148 7.98e-25 100
Msa0131700 MtrunA17_Chr4g0075631 82.353 51 9 0 219 269 1 51 5.01e-23 92.0
Msa0131700 MtrunA17_Chr4g0069541 66.667 60 20 0 322 381 55 114 2.65e-20 87.8
Msa0131700 MtrunA17_Chr1g0174801 86.667 30 4 0 135 164 40 69 1.10e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0131700 AT3G06720.1 82.836 536 84 6 1 532 1 532 0.0 897
Msa0131700 AT3G06720.2 82.836 536 84 6 1 532 1 532 0.0 897
Msa0131700 AT4G16143.2 82.463 536 87 2 1 531 1 534 0.0 893
Msa0131700 AT4G16143.1 82.463 536 87 2 1 531 1 534 0.0 893
Msa0131700 AT1G09270.2 74.677 541 123 5 1 531 1 537 0.0 799
Msa0131700 AT1G09270.1 74.677 541 123 5 1 531 1 537 0.0 799
Msa0131700 AT1G02690.1 70.718 543 141 5 1 531 1 537 0.0 783
Msa0131700 AT1G02690.2 70.588 544 141 6 1 531 1 538 0.0 780
Msa0131700 AT4G02150.1 70.795 541 137 5 1 531 1 530 0.0 773
Msa0131700 AT1G09270.3 78.775 457 92 3 78 531 1 455 0.0 717
Msa0131700 AT5G49310.1 65.868 501 164 3 1 501 1 494 0.0 654
Msa0131700 AT3G05720.1 64.300 493 157 4 13 497 9 490 0.0 619
Msa0131700 AT3G05720.2 64.300 493 157 4 13 497 9 490 0.0 619
Msa0131700 AT4G02150.2 71.463 417 102 3 1 408 1 409 0.0 609
Msa0131700 AT5G52000.1 54.762 420 177 6 79 497 14 421 1.35e-145 426
Msa0131700 AT5G49305.5 44.804 433 176 10 82 506 6 383 7.58e-106 322
Msa0131700 AT5G49305.3 44.804 433 176 10 82 506 6 383 7.58e-106 322
Msa0131700 AT5G49305.4 44.804 433 176 10 82 506 6 383 7.58e-106 322
Msa0131700 AT5G49305.1 44.804 433 176 10 82 506 6 383 7.58e-106 322
Msa0131700 AT5G49305.2 44.804 433 176 10 82 506 6 383 7.58e-106 322
Msa0131700 AT1G32880.1 61.224 147 52 3 363 507 40 183 1.21e-54 182
Msa0131700 AT5G03070.1 28.298 523 320 14 14 499 10 514 8.84e-47 171

Find 184 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAATTAACCATTCATTTA+TGG 0.082234 1_3:+62638171 None:intergenic
AAACTTTCATCGACGAAAAT+AGG 0.156375 1_3:+62632611 None:intergenic
CGGGGCTTTGGTTCCTCTTT+TGG 0.163040 1_3:-62636212 Msa0131700:CDS
GTTACGATTGTGGGTCTATT+TGG 0.232502 1_3:-62632750 Msa0131700:three_prime_UTR
CACACACCAGCAACCATAAT+TGG 0.271574 1_3:+62637528 None:intergenic
GTTGGAACATTTGCCAATTA+TGG 0.278410 1_3:-62637541 Msa0131700:CDS
GTGATCGAGGCCAATATATT+TGG 0.282098 1_3:-62633815 Msa0131700:CDS
CTTGGTTATATGTAATAGTT+TGG 0.282901 1_3:-62632801 Msa0131700:three_prime_UTR
CCCAGCTGTAATGTTTGATA+TGG 0.317154 1_3:+62633962 None:intergenic
TGAGGTTCCTTCTGTGCCTT+CGG 0.319708 1_3:-62633254 Msa0131700:CDS
CCTGCACTTCCTGCTCTTGC+TGG 0.324162 1_3:-62635559 Msa0131700:CDS
TCCTGTATGATGGGACAAGC+TGG 0.327403 1_3:-62633034 Msa0131700:three_prime_UTR
AAATAGGGACACTGGATATA+TGG 0.330170 1_3:+62632627 None:intergenic
TGTTGCAGTTTGAGGCAGCC+TGG 0.331762 1_3:-62636640 Msa0131700:intron
GTCGTTTCTTTGTGTCCAAC+AGG 0.337902 1_3:-62632997 Msa0131700:three_prime_UTR
TGTTCTCGGTCACGGGGCTT+TGG 0.338208 1_3:-62636224 Msa0131700:CDS
TTGCAGGCTGTGTGGGCATT+AGG 0.348382 1_3:-62636283 Msa0131700:intron
GAGAACAAGATCACGACATC+TGG 0.355494 1_3:+62636240 None:intergenic
GAGGTTCCTTCTGTGCCTTC+GGG 0.360817 1_3:-62633253 Msa0131700:CDS
GGACACTTTCAAACTTCTGC+AGG 0.363703 1_3:-62636141 Msa0131700:CDS
CCTCAGCATCATCAATCATC+TGG 0.369585 1_3:+62633428 None:intergenic
GTTGCGACGGACCTCGGTCC+TGG 0.372521 1_3:+62637935 None:intergenic
TGGACGATACGACATCGTTT+AGG 0.372833 1_3:+62637968 None:intergenic
CCAGGCGATGCTTCTCAATC+AGG 0.373845 1_3:-62633295 Msa0131700:CDS
ATTGGTAAATAGAGTGTTGC+TGG 0.374330 1_3:-62632967 Msa0131700:three_prime_UTR
TAATACACCCTTGACTTACT+AGG 0.382527 1_3:+62633584 None:intergenic
TGGAGACTATACTGCTCTAT+TGG 0.384488 1_3:+62638024 None:intergenic
TCGGTCCTGGAGTTTGCGTT+TGG 0.385924 1_3:+62637948 None:intergenic
GCATCAAGAAGGAAGCTTGC+TGG 0.387204 1_3:-62633986 Msa0131700:CDS
TGGGAATAAACAGCAGATTC+AGG 0.391086 1_3:-62633943 Msa0131700:intron
GTGATCTTGTTCTCGGTCAC+GGG 0.391108 1_3:-62636231 Msa0131700:CDS
CATTTGCCAATTATGGTTGC+TGG 0.398869 1_3:-62637534 Msa0131700:CDS
ACGGCGACGGCGGCCTTCTT+CGG 0.399895 1_3:+62637890 None:intergenic
TAGGATTGTGACAGTTTGTC+TGG 0.404102 1_3:-62633527 Msa0131700:CDS
GGAAGACTTTCCGCAGTTGC+AGG 0.411485 1_3:-62637273 Msa0131700:intron
AGATGTCGTGATCTTGTTCT+CGG 0.411575 1_3:-62636238 Msa0131700:CDS
CTCTAACGTCGTTGAGAAGA+AGG 0.413914 1_3:-62637766 Msa0131700:intron
CACCAGAGGACCAAATATAT+TGG 0.421774 1_3:+62633805 None:intergenic
AACTTTATATAATACAAAAT+AGG 0.421972 1_3:+62632568 None:intergenic
GGATTGGCTTGGGCAATGCT+TGG 0.424796 1_3:-62632946 Msa0131700:three_prime_UTR
GGCCAATATATTTGGTCCTC+TGG 0.429004 1_3:-62633807 Msa0131700:CDS
AACTTTCATCGACGAAAATA+GGG 0.430049 1_3:+62632612 None:intergenic
GTTGCAGTTTGAGGCAGCCT+GGG 0.430345 1_3:-62636639 Msa0131700:intron
TTTCGAAAGCTGCTATCAAT+TGG 0.433330 1_3:-62637465 Msa0131700:intron
TGAAGATTCTTGAGACATAC+TGG 0.434618 1_3:-62633345 Msa0131700:CDS
ATAATGAATAACTGAACTCT+AGG 0.436920 1_3:+62632655 None:intergenic
CAATAGAAGCTCAACAAGTC+GGG 0.443446 1_3:+62635423 None:intergenic
TATCAAGAAAGAGGCTGCTT+GGG 0.447132 1_3:-62633756 Msa0131700:CDS
AGTAGATGTTCATGCTTCAA+TGG 0.450475 1_3:-62633213 Msa0131700:exon
GTCTGTATAACCTCCTCAAT+TGG 0.451353 1_3:+62637332 None:intergenic
CGTGATCTTGTTCTCGGTCA+CGG 0.451391 1_3:-62636232 Msa0131700:CDS
AAGTCTTGACTGATGCCTGC+TGG 0.451595 1_3:-62635513 Msa0131700:CDS
GTAGATGTTCATGCTTCAAT+GGG 0.453724 1_3:-62633212 Msa0131700:exon
TCTCTTCACGACGATTCTTA+CGG 0.453848 1_3:+62637847 None:intergenic
ATTCCTGCTCTTCGTACTGT+TGG 0.456615 1_3:-62635268 Msa0131700:CDS
CCAGCAAGAGCAGGAAGTGC+AGG 0.456751 1_3:+62635559 None:intergenic
TAGTGACGATGTCCGTGAAC+AGG 0.458807 1_3:-62636522 Msa0131700:intron
AACACTCTATTTACCAATGT+TGG 0.460273 1_3:+62632972 None:intergenic
TAAATAGAGTGTTGCTGGAT+TGG 0.460720 1_3:-62632962 Msa0131700:three_prime_UTR
ATTAAAGTCCTCCTGTATGA+TGG 0.461686 1_3:-62633044 Msa0131700:three_prime_UTR
GCTTTGACAAACATAGCTTC+TGG 0.467363 1_3:-62636617 Msa0131700:CDS
CCTGTATGATGGGACAAGCT+GGG 0.468046 1_3:-62633033 Msa0131700:three_prime_UTR
CAACACAGAGATTTATGAAA+AGG 0.468157 1_3:-62633371 Msa0131700:CDS
ATATCAAGAAAGAGGCTGCT+TGG 0.477404 1_3:-62633757 Msa0131700:CDS
CCCAGCTTGTCCCATCATAC+AGG 0.477877 1_3:+62633033 None:intergenic
GATTGATGATGCTGAGGGGT+TGG 0.479588 1_3:-62633422 Msa0131700:CDS
TTCTTATCTGTCCCGATCCT+AGG 0.480160 1_3:-62633546 Msa0131700:CDS
AGACAAACTGTCACAATCCT+AGG 0.480993 1_3:+62633529 None:intergenic
CCTGATTGAGAAGCATCGCC+TGG 0.486344 1_3:+62633295 None:intergenic
CGGAGAAGAGAAAGAGGCAG+TGG 0.488800 1_3:+62638004 None:intergenic
GTATCGGTTGCGACGGACCT+CGG 0.489943 1_3:+62637929 None:intergenic
ATTCGCAAACGAACCAGAAA+AGG 0.491574 1_3:+62633171 None:intergenic
ACCATATCAAACATTACAGC+TGG 0.491638 1_3:-62633963 Msa0131700:CDS
GCTATCTCAAATGCTACATC+TGG 0.492465 1_3:-62633734 Msa0131700:CDS
ATCGTCCAAACGCAAACTCC+AGG 0.492966 1_3:-62637953 Msa0131700:CDS
TTACCAATGTTGGACCCTGT+TGG 0.495530 1_3:+62632982 None:intergenic
ACCTGATCAAAAGGAGGCTG+TGG 0.496155 1_3:+62636112 None:intergenic
ATTTCTCAGCATAGAAAGCT+TGG 0.497993 1_3:+62636171 None:intergenic
CTATGCTGAGAAATGCTACC+TGG 0.506227 1_3:-62636162 Msa0131700:CDS
GTTCCTTCTGTGCCTTCGGG+TGG 0.510496 1_3:-62633250 Msa0131700:CDS
GAGTGTTGCTGGATTGGCTT+GGG 0.515886 1_3:-62632956 Msa0131700:three_prime_UTR
ACAATAGAAGCTCAACAAGT+CGG 0.519609 1_3:+62635422 None:intergenic
CTTGAAAACATCTTGAAGGT+TGG 0.523089 1_3:-62633499 Msa0131700:CDS
AACTGTCACAATCCTAGGAT+CGG 0.523984 1_3:+62633534 None:intergenic
GGAATTAGCACTGAAGGAGA+TGG 0.524492 1_3:+62635286 None:intergenic
TCTCAACCATGGTGTCTTCA+CGG 0.525122 1_3:+62637871 None:intergenic
AAGATATGATAGTGCCCAGC+AGG 0.525630 1_3:+62635498 None:intergenic
GCGGCCTTCTTCGGCATCGA+CGG 0.526344 1_3:+62637899 None:intergenic
GTCGCCGTCGATGCCGAAGA+AGG 0.528551 1_3:-62637903 Msa0131700:CDS
CATCGACGGCGACCTTGTAT+CGG 0.531230 1_3:+62637913 None:intergenic
TCATTCAATTGTGCCAAAAG+AGG 0.531241 1_3:+62636199 None:intergenic
ATCTCAAATGCTACATCTGG+TGG 0.531801 1_3:-62633731 Msa0131700:CDS
ATTCAAGCTGTAATTGAAGC+TGG 0.533221 1_3:-62635454 Msa0131700:CDS
AGCTATGTTTGTCAAAGCCC+AGG 0.533920 1_3:+62636622 None:intergenic
TTAAAGTCCTCCTGTATGAT+GGG 0.534537 1_3:-62633043 Msa0131700:three_prime_UTR
GATCGACGGAGAAGAGAAAG+AGG 0.538590 1_3:+62637998 None:intergenic
AGGCCTTGAAAACATCTTGA+AGG 0.539236 1_3:-62633503 Msa0131700:CDS
TGGGCATTAGGAAATGTTGC+TGG 0.539661 1_3:-62636271 Msa0131700:CDS
GGTCCGTCGCAACCGATACA+AGG 0.540085 1_3:-62637925 Msa0131700:CDS
AGAACGTACTCCACCAATTG+AGG 0.541142 1_3:-62637345 Msa0131700:CDS
AGGAGTTAACCATAAATGAA+TGG 0.541924 1_3:-62638180 Msa0131700:five_prime_UTR
AGTCTTGACTGATGCCTGCT+GGG 0.542032 1_3:-62635512 Msa0131700:CDS
ACTGTCACAATCCTAGGATC+GGG 0.542887 1_3:+62633535 None:intergenic
GACACTTTCAAACTTCTGCA+GGG 0.542937 1_3:-62636140 Msa0131700:CDS
TGAGTTTGATATCAAGAAAG+AGG 0.543652 1_3:-62633765 Msa0131700:CDS
GATTCTTGAGACATACTGGT+TGG 0.544779 1_3:-62633341 Msa0131700:CDS
TGAATAAGACCAGCAAGAGC+AGG 0.545161 1_3:+62635550 None:intergenic
TCTCTGTGTTGTCATGACTC+TGG 0.550839 1_3:+62633383 None:intergenic
TCTTGAGACATACTGGTTGG+AGG 0.551326 1_3:-62633338 Msa0131700:CDS
ACTGTTGGAAACATTGTCAC+TGG 0.554408 1_3:-62635253 Msa0131700:CDS
CATCTTGAAGGTTGGAGAAG+CGG 0.554732 1_3:-62633491 Msa0131700:CDS
AAGTCAAATATACCTGTTCA+CGG 0.556545 1_3:+62636510 None:intergenic
GCAAAATGCCAGATGCTCGT+TGG 0.556813 1_3:-62632728 Msa0131700:three_prime_UTR
ATCTCATGGTGACAGATGTA+TGG 0.557066 1_3:-62632915 Msa0131700:three_prime_UTR
TTTCCAACAGTACGAAGAGC+AGG 0.559463 1_3:+62635265 None:intergenic
CTCAGCATCATCAATCATCT+GGG 0.560931 1_3:+62633429 None:intergenic
AAATGAATGAAACTAACGGT+AGG 0.562334 1_3:+62638064 None:intergenic
ATTGTGACAGTTTGTCTGGA+AGG 0.563823 1_3:-62633523 Msa0131700:CDS
TGTATAACCTCCTCAATTGG+TGG 0.567337 1_3:+62637335 None:intergenic
GACAGGTACCTAGTAAGTCA+AGG 0.569304 1_3:-62633592 Msa0131700:intron
TGTCCAACAGGGTCCAACAT+TGG 0.572509 1_3:-62632985 Msa0131700:three_prime_UTR
TCGTTTCTTTGTGTCCAACA+GGG 0.573793 1_3:-62632996 Msa0131700:three_prime_UTR
CTAAGGTGGTAATTGACCAT+GGG 0.574999 1_3:-62636580 Msa0131700:CDS
GCAGAAGTTTGAAAGTGTCC+AGG 0.579750 1_3:+62636144 None:intergenic
TGGAACATCTGAAAACACTA+AGG 0.579810 1_3:-62636597 Msa0131700:CDS
AGAGCAGGAATTAGCACTGA+AGG 0.580502 1_3:+62635280 None:intergenic
AGAACAAGATCACGACATCT+GGG 0.580552 1_3:+62636241 None:intergenic
TGGAGATGATTTGCAAACTC+AGG 0.581537 1_3:-62635233 Msa0131700:intron
AAAGAACAAACCTGCAACTG+CGG 0.583325 1_3:+62637263 None:intergenic
CCATGGTGTCTTCACGGCGA+CGG 0.585962 1_3:+62637877 None:intergenic
GAATTAGCACTGAAGGAGAT+GGG 0.587950 1_3:+62635287 None:intergenic
CAATTATGGTTGCTGGTGTG+TGG 0.588111 1_3:-62637527 Msa0131700:CDS
ACGATACGACATCGTTTAGG+AGG 0.588773 1_3:+62637971 None:intergenic
CTGTATGATGGGACAAGCTG+GGG 0.589464 1_3:-62633032 Msa0131700:three_prime_UTR
ATCGACGAAAATAGGGACAC+TGG 0.590862 1_3:+62632619 None:intergenic
AGAGTGTTGCTGGATTGGCT+TGG 0.590986 1_3:-62632957 Msa0131700:three_prime_UTR
ATTGAGGAGGTTATACAGAC+TGG 0.591254 1_3:-62637329 Msa0131700:CDS
AATCCACCCGAAGGCACAGA+AGG 0.592098 1_3:+62633247 None:intergenic
GAGAAGTCTAGTATTGTCTA+CGG 0.592208 1_3:+62632873 None:intergenic
GCACTATCATATCTTTCTGA+TGG 0.593235 1_3:-62635490 Msa0131700:CDS
TAATGAATAACTGAACTCTA+GGG 0.595201 1_3:+62632656 None:intergenic
AATGAATGAAACTAACGGTA+GGG 0.599046 1_3:+62638065 None:intergenic
TCTCAATCAGGATTCAACTT+CGG 0.600258 1_3:-62633283 Msa0131700:CDS
GAAGACGAGACTATGCCTCC+AGG 0.602017 1_3:-62633313 Msa0131700:CDS
ATTATATAAAGTTTCACGCA+GGG 0.606159 1_3:-62632558 Msa0131700:three_prime_UTR
ACGTTAGAGTGAAGAGCGGA+AGG 0.610168 1_3:+62637780 None:intergenic
CTGTGTTGTCATGACTCTGG+AGG 0.617202 1_3:+62633386 None:intergenic
ACTAAGGTGGTAATTGACCA+TGG 0.617924 1_3:-62636581 Msa0131700:CDS
TGATCTTGTTCTCGGTCACG+GGG 0.618284 1_3:-62636230 Msa0131700:CDS
TTATAAGAAAAGCATCAAGA+AGG 0.621627 1_3:-62633997 Msa0131700:CDS
CGACCTTGTATCGGTTGCGA+CGG 0.627945 1_3:+62637922 None:intergenic
TATTTAACAGGCTGTGATCG+AGG 0.629779 1_3:-62633828 Msa0131700:intron
CCATATCAAACATTACAGCT+GGG 0.630827 1_3:-62633962 Msa0131700:CDS
ACACTTTCAAACTTCTGCAG+GGG 0.631402 1_3:-62636139 Msa0131700:CDS
TGGTGTCTTCACGGCGACGG+CGG 0.632012 1_3:+62637880 None:intergenic
ATAGGTTATCATCAATCATG+AGG 0.634624 1_3:-62634054 Msa0131700:intron
TATTATATAAAGTTTCACGC+AGG 0.637214 1_3:-62632559 Msa0131700:three_prime_UTR
TGATAAATGAATGAAACTAA+CGG 0.637262 1_3:+62638060 None:intergenic
CATCGTCACTAGAAGAAGCA+AGG 0.638488 1_3:+62636534 None:intergenic
ACAGGTACCTAGTAAGTCAA+GGG 0.638546 1_3:-62633591 Msa0131700:intron
CCAGATGATTGATGATGCTG+AGG 0.638583 1_3:-62633428 Msa0131700:CDS
AACATCTGAAAACACTAAGG+TGG 0.654726 1_3:-62636594 Msa0131700:CDS
AGCTTGTCCCATCATACAGG+AGG 0.659269 1_3:+62633036 None:intergenic
CAGATGATTGATGATGCTGA+GGG 0.661033 1_3:-62633427 Msa0131700:CDS
ATTCAACTTCGGTAGCTCTG+AGG 0.661744 1_3:-62633272 Msa0131700:CDS
GTTTAGGAGGAAGTGATCGA+CGG 0.666953 1_3:+62637984 None:intergenic
GTCAACAGATTATATAGACA+AGG 0.667483 1_3:+62634026 None:intergenic
CCGTCGCCGTGAAGACACCA+TGG 0.674855 1_3:-62637877 Msa0131700:CDS
AATAGAAGCTCAACAAGTCG+GGG 0.676710 1_3:+62635424 None:intergenic
ACAGATAAGAAGATCACACA+AGG 0.680401 1_3:+62633558 None:intergenic
ACGTACTCCACCAATTGAGG+AGG 0.687347 1_3:-62637342 Msa0131700:CDS
AGAGCGGAAGGAATCTGCTG+AGG 0.690264 1_3:+62637792 None:intergenic
GATTGAGAAGCATCGCCTGG+AGG 0.697893 1_3:+62633298 None:intergenic
TCATGGTGACAGATGTATGG+TGG 0.702524 1_3:-62632912 Msa0131700:three_prime_UTR
ATTCTTACGGATCTCAACCA+TGG 0.707053 1_3:+62637860 None:intergenic
TAAGGTGGTAATTGACCATG+GGG 0.708388 1_3:-62636579 Msa0131700:CDS
AAACGCAAACTCCAGGACCG+AGG 0.710372 1_3:-62637946 Msa0131700:CDS
TTGAAGTTAAATCCACCCGA+AGG 0.711716 1_3:+62633238 None:intergenic
AATGCATATGATAGAGAACA+CGG 0.712688 1_3:+62632522 None:intergenic
AAAAGGCTAAATATAAGACA+CGG 0.732928 1_3:+62633188 None:intergenic
TAGATGTTCATGCTTCAATG+GGG 0.738164 1_3:-62633211 Msa0131700:three_prime_UTR
AACGACGTTAGAGTGAAGAG+CGG 0.743526 1_3:+62637776 None:intergenic
AGATGATTGATGATGCTGAG+GGG 0.754975 1_3:-62633426 Msa0131700:CDS
CAGATAAGAAGATCACACAA+GGG 0.772619 1_3:+62633559 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATTAAAAAAAAA+AGG + chr1_3:62635417-62635436 None:intergenic 0.0%
!! ATTAATGAAGTAATTAATTT+AGG - chr1_3:62633362-62633381 Msa0131700:CDS 10.0%
!!! AAGTTTAAAATTCAAAAAAT+AGG + chr1_3:62633829-62633848 None:intergenic 10.0%
!!! ATTTTTTATTTATTATCTGT+TGG - chr1_3:62635054-62635073 Msa0131700:intron 10.0%
!! AACTTTATATAATACAAAAT+AGG + chr1_3:62638196-62638215 None:intergenic 10.0%
!! ATTTAAGAATCAAAAAAACA+AGG - chr1_3:62632550-62632569 Msa0131700:three_prime_UTR 15.0%
!!! TTTTTAGATTTGTTTGAATT+AGG - chr1_3:62633144-62633163 Msa0131700:intron 15.0%
!! TAAAATTCAAAAAATAGGTT+TGG + chr1_3:62633824-62633843 None:intergenic 15.0%
!!! TTTTCAAGAAAATATATCAT+GGG + chr1_3:62634431-62634450 None:intergenic 15.0%
!! TAAATAAAAAATTGTACTAG+TGG + chr1_3:62635046-62635065 None:intergenic 15.0%
!!! TACATTCTACTATTTTTTAT+AGG - chr1_3:62635174-62635193 Msa0131700:intron 15.0%
!! TTTATCCACAAAAAAAAAAA+AGG + chr1_3:62635671-62635690 None:intergenic 15.0%
!! AAACAAAAAGAAAATATAAG+AGG + chr1_3:62636117-62636136 None:intergenic 15.0%
!! AAATGATTATTGTAACATAA+CGG + chr1_3:62636346-62636365 None:intergenic 15.0%
!!! ATTTCTTTCTGAATATTTTT+TGG - chr1_3:62636551-62636570 Msa0131700:CDS 15.0%
!! ATCAATTAACCATTCATTTA+TGG + chr1_3:62632593-62632612 None:intergenic 20.0%
!! TGATAAATGAATGAAACTAA+CGG + chr1_3:62632704-62632723 None:intergenic 20.0%
!! AAAGTGATTTAGGAATAATA+AGG + chr1_3:62633048-62633067 None:intergenic 20.0%
!!! TACAGGAATTTTACAAAATT+CGG + chr1_3:62634038-62634057 None:intergenic 20.0%
!!! GTTTTCAAGAAAATATATCA+TGG + chr1_3:62634432-62634451 None:intergenic 20.0%
!!! TATTTTTATACCTGATCAAA+AGG + chr1_3:62634661-62634680 None:intergenic 20.0%
!! ATGTAATACTCTAATCTATA+GGG + chr1_3:62634910-62634929 None:intergenic 20.0%
!! TATGTAATACTCTAATCTAT+AGG + chr1_3:62634911-62634930 None:intergenic 20.0%
!!! TCTATTTTTCTTTTCACTAT+TGG - chr1_3:62636253-62636272 Msa0131700:CDS 20.0%
!! AGATCTTATCATTTATACTA+CGG - chr1_3:62636603-62636622 Msa0131700:CDS 20.0%
!! AATTTCTATTGTTTGTTTGT+TGG - chr1_3:62636662-62636681 Msa0131700:intron 20.0%
!!! GATGCTTTTCTTATAATTAT+TGG + chr1_3:62636760-62636779 None:intergenic 20.0%
!! CTGTTAAATATTAGGAAATT+AGG + chr1_3:62636923-62636942 None:intergenic 20.0%
!! CTAATTTCCTAATATTTAAC+AGG - chr1_3:62636921-62636940 Msa0131700:intron 20.0%
!! GATAAAAATATAGGCAATAA+TGG - chr1_3:62637292-62637311 Msa0131700:CDS 20.0%
! GAAAAAGAAATCACAAATCT+TGG - chr1_3:62632630-62632649 Msa0131700:three_prime_UTR 25.0%
!! AGATTTGTTTGAATTAGGTT+AGG - chr1_3:62633149-62633168 Msa0131700:intron 25.0%
!! GATTTGTTTGAATTAGGTTA+GGG - chr1_3:62633150-62633169 Msa0131700:intron 25.0%
!! ACAGGAATTTTACAAAATTC+GGG + chr1_3:62634037-62634056 None:intergenic 25.0%
!!! CTTTAAAATGCAGAAACTTT+GGG - chr1_3:62634296-62634315 Msa0131700:intron 25.0%
! ATCTTATGGATAACATTGTT+TGG - chr1_3:62634954-62634973 Msa0131700:intron 25.0%
! TAAATCAAATATTGAGCAGA+TGG + chr1_3:62635109-62635128 None:intergenic 25.0%
! GATCCAAAAATACAACATAA+TGG + chr1_3:62635153-62635172 None:intergenic 25.0%
! CACAAAAAAAAAAAAGGCAA+AGG + chr1_3:62635665-62635684 None:intergenic 25.0%
!!! CTTTGCCTTTTTTTTTTTTG+TGG - chr1_3:62635663-62635682 Msa0131700:intron 25.0%
! ATAAAAGAAATACTGTTAGC+AGG - chr1_3:62635686-62635705 Msa0131700:intron 25.0%
! TAAAAGAAATACTGTTAGCA+GGG - chr1_3:62635687-62635706 Msa0131700:intron 25.0%
! GTTTGCTTATTAGATTACTA+AGG - chr1_3:62636370-62636389 Msa0131700:intron 25.0%
! TTAAAGAAAGGTTTGACATA+TGG + chr1_3:62636475-62636494 None:intergenic 25.0%
! TGTCAAACCTTTCTTTAAAT+TGG - chr1_3:62636477-62636496 Msa0131700:intron 25.0%
!!! TATTCAAATATCGATTTTCC+TGG - chr1_3:62636508-62636527 Msa0131700:intron 25.0%
!!! TTATAAGAAAAGCATCAAGA+AGG - chr1_3:62636764-62636783 Msa0131700:intron 25.0%
! ATAATATTATTAACCCTCCA+GGG + chr1_3:62637100-62637119 None:intergenic 25.0%
! AAAAGGCTAAATATAAGACA+CGG + chr1_3:62637576-62637595 None:intergenic 25.0%
!! AACTTTATCAAGAATTTTGC+AGG - chr1_3:62637676-62637695 Msa0131700:intron 25.0%
!!! TCAGTATCATGATTTTTTCT+TGG - chr1_3:62637942-62637961 Msa0131700:CDS 25.0%
! CTTGGTTATATGTAATAGTT+TGG - chr1_3:62637960-62637979 Msa0131700:CDS 25.0%
!!! TTAAGTTTTAGTTACGATTG+TGG - chr1_3:62638001-62638020 Msa0131700:five_prime_UTR 25.0%
!!! TAAGTTTTAGTTACGATTGT+GGG - chr1_3:62638002-62638021 Msa0131700:five_prime_UTR 25.0%
! AAAAATTCATAGGTACCAAT+GGG + chr1_3:62638067-62638086 None:intergenic 25.0%
! AAAAAATTCATAGGTACCAA+TGG + chr1_3:62638068-62638087 None:intergenic 25.0%
!!! TTGGTACCTATGAATTTTTT+TGG - chr1_3:62638068-62638087 Msa0131700:five_prime_UTR 25.0%
! TAATGAATAACTGAACTCTA+GGG + chr1_3:62638108-62638127 None:intergenic 25.0%
! ATAATGAATAACTGAACTCT+AGG + chr1_3:62638109-62638128 None:intergenic 25.0%
! TATTATATAAAGTTTCACGC+AGG - chr1_3:62638202-62638221 Msa0131700:five_prime_UTR 25.0%
! ATTATATAAAGTTTCACGCA+GGG - chr1_3:62638203-62638222 Msa0131700:five_prime_UTR 25.0%
AGGAGTTAACCATAAATGAA+TGG - chr1_3:62632581-62632600 Msa0131700:three_prime_UTR 30.0%
AATGAATGAAACTAACGGTA+GGG + chr1_3:62632699-62632718 None:intergenic 30.0%
AAATGAATGAAACTAACGGT+AGG + chr1_3:62632700-62632719 None:intergenic 30.0%
! AGCTTTGATCAAAGTGATTT+AGG + chr1_3:62633058-62633077 None:intergenic 30.0%
! GATTGACTTTGATATTTGTG+TGG - chr1_3:62633392-62633411 Msa0131700:CDS 30.0%
! TTTTACAAAATTCGGGGTAT+GGG + chr1_3:62634030-62634049 None:intergenic 30.0%
! ATTTTACAAAATTCGGGGTA+TGG + chr1_3:62634031-62634050 None:intergenic 30.0%
! CAGGAATTTTACAAAATTCG+GGG + chr1_3:62634036-62634055 None:intergenic 30.0%
AAGTCAAATATACCTGTTCA+CGG + chr1_3:62634254-62634273 None:intergenic 30.0%
! CCAAAGTTTCTGCATTTTAA+AGG + chr1_3:62634298-62634317 None:intergenic 30.0%
!! CCTTTAAAATGCAGAAACTT+TGG - chr1_3:62634295-62634314 Msa0131700:intron 30.0%
ATTTCATACACACACAAAAG+AGG + chr1_3:62634398-62634417 None:intergenic 30.0%
!!! TTCTGTGATTTTTGTTTTGC+AGG - chr1_3:62634462-62634481 Msa0131700:intron 30.0%
! TTTTATACCTGATCAAAAGG+AGG + chr1_3:62634658-62634677 None:intergenic 30.0%
AATCGAATAACTTAGTACTG+TGG - chr1_3:62634701-62634720 Msa0131700:intron 30.0%
!!! TTAACTGTTACTTTTCTGTC+TGG - chr1_3:62634732-62634751 Msa0131700:intron 30.0%
! GTAATATTTTACCTTGTCAG+AGG + chr1_3:62634767-62634786 None:intergenic 30.0%
CTTATCGAGTCAAAAGAATA+TGG - chr1_3:62634877-62634896 Msa0131700:intron 30.0%
ACAGAATACTTCTGATCTTA+TGG - chr1_3:62634940-62634959 Msa0131700:intron 30.0%
CATACTTTGCAATTTCATGA+CGG + chr1_3:62635011-62635030 None:intergenic 30.0%
GAAATTGCAAAGTATGCAAT+TGG - chr1_3:62635015-62635034 Msa0131700:intron 30.0%
! CTGCCATTATGTTGTATTTT+TGG - chr1_3:62635147-62635166 Msa0131700:intron 30.0%
TTCGTAACAAATAAAACCAC+AGG + chr1_3:62635633-62635652 None:intergenic 30.0%
AAAAGAAATACTGTTAGCAG+GGG - chr1_3:62635688-62635707 Msa0131700:intron 30.0%
AAAATAAGGCTTAGAGTGAT+AGG - chr1_3:62635977-62635996 Msa0131700:intron 30.0%
AAATAAGGCTTAGAGTGATA+GGG - chr1_3:62635978-62635997 Msa0131700:intron 30.0%
!!! ATGCCATCAGTTTTTTTCAA+CGG + chr1_3:62636078-62636097 None:intergenic 30.0%
!! TAAAAGGGTGCTTAGATATA+GGG + chr1_3:62636176-62636195 None:intergenic 30.0%
!! ATAAAAGGGTGCTTAGATAT+AGG + chr1_3:62636177-62636196 None:intergenic 30.0%
ACCATTTGCCTCTAATAAAA+GGG + chr1_3:62636191-62636210 None:intergenic 30.0%
GATTATTGTAACATAACGGT+TGG + chr1_3:62636342-62636361 None:intergenic 30.0%
TCAAGCAATGACATTGAAAT+AGG + chr1_3:62636415-62636434 None:intergenic 30.0%
CAATAATGCAAAGAAAGGTT+TGG + chr1_3:62636446-62636465 None:intergenic 30.0%
TCAAGCAATAATGCAAAGAA+AGG + chr1_3:62636451-62636470 None:intergenic 30.0%
CCTCAATCCAATTTAAAGAA+AGG + chr1_3:62636487-62636506 None:intergenic 30.0%
CCTTTCTTTAAATTGGATTG+AGG - chr1_3:62636484-62636503 Msa0131700:intron 30.0%
TATTCAGAAAGAAATAGAGC+TGG + chr1_3:62636546-62636565 None:intergenic 30.0%
! ATGATTGATGATAACCTATG+GGG + chr1_3:62636706-62636725 None:intergenic 30.0%
! CATGATTGATGATAACCTAT+GGG + chr1_3:62636707-62636726 None:intergenic 30.0%
! TCATGATTGATGATAACCTA+TGG + chr1_3:62636708-62636727 None:intergenic 30.0%
ATAGGTTATCATCAATCATG+AGG - chr1_3:62636707-62636726 Msa0131700:intron 30.0%
GTCAACAGATTATATAGACA+AGG + chr1_3:62636738-62636757 None:intergenic 30.0%
ATCACAGCCTGTTAAATATT+AGG + chr1_3:62636931-62636950 None:intergenic 30.0%
TGAGTTTGATATCAAGAAAG+AGG - chr1_3:62636996-62637015 Msa0131700:intron 30.0%
! ATGCATTTTCAATATTTCCC+TGG - chr1_3:62637080-62637099 Msa0131700:intron 30.0%
! ATTTTCAATATTTCCCTGGA+GGG - chr1_3:62637084-62637103 Msa0131700:intron 30.0%
CATAATATTATTAACCCTCC+AGG + chr1_3:62637101-62637120 None:intergenic 30.0%
CTGGAGGGTTAATAATATTA+TGG - chr1_3:62637099-62637118 Msa0131700:intron 30.0%
AATTATTCTCCATGTTTGAC+AGG - chr1_3:62637152-62637171 Msa0131700:intron 30.0%
CAACACAGAGATTTATGAAA+AGG - chr1_3:62637390-62637409 Msa0131700:intron 30.0%
!! GTCTTATATTTAGCCTTTTC+TGG - chr1_3:62637577-62637596 Msa0131700:intron 30.0%
AACACTCTATTTACCAATGT+TGG + chr1_3:62637792-62637811 None:intergenic 30.0%
CATCGACCAAAAAAATTCAT+AGG + chr1_3:62638077-62638096 None:intergenic 30.0%
AACTTTCATCGACGAAAATA+GGG + chr1_3:62638152-62638171 None:intergenic 30.0%
AAACTTTCATCGACGAAAAT+AGG + chr1_3:62638153-62638172 None:intergenic 30.0%
AAAAAAACAAGGCAACGATG+AGG - chr1_3:62632561-62632580 Msa0131700:three_prime_UTR 35.0%
! TTCTATGTTGTTGTTGCAGT+TGG - chr1_3:62633202-62633221 Msa0131700:three_prime_UTR 35.0%
GTTGGAACATTTGCCAATTA+TGG - chr1_3:62633220-62633239 Msa0131700:exon 35.0%
TTTCGAAAGCTGCTATCAAT+TGG - chr1_3:62633296-62633315 Msa0131700:CDS 35.0%
AAAGCTGCTATCAATTGGTT+AGG - chr1_3:62633301-62633320 Msa0131700:CDS 35.0%
! TTTTGTCGAGTTTCTGATGA+GGG - chr1_3:62633467-62633486 Msa0131700:CDS 35.0%
CGTAACGCTATCTAGTATAT+GGG + chr1_3:62633622-62633641 None:intergenic 35.0%
ACGTAACGCTATCTAGTATA+TGG + chr1_3:62633623-62633642 None:intergenic 35.0%
TATACACGTATGATGCTTGT+CGG - chr1_3:62633654-62633673 Msa0131700:intron 35.0%
GAAACCATAAATTTCACTCG+CGG + chr1_3:62633705-62633724 None:intergenic 35.0%
ACAACCATAAATTTCACTCG+CGG + chr1_3:62633739-62633758 None:intergenic 35.0%
TGTATCAGCAACATCAAACA+TGG + chr1_3:62634087-62634106 None:intergenic 35.0%
TGGAACATCTGAAAACACTA+AGG - chr1_3:62634164-62634183 Msa0131700:intron 35.0%
AACATCTGAAAACACTAAGG+TGG - chr1_3:62634167-62634186 Msa0131700:intron 35.0%
CAAGGAGCTTCACAAAAATT+GGG + chr1_3:62634212-62634231 None:intergenic 35.0%
!! TGCATTTTAAAGGCAGATGA+AGG + chr1_3:62634288-62634307 None:intergenic 35.0%
TCATTCAATTGTGCCAAAAG+AGG + chr1_3:62634565-62634584 None:intergenic 35.0%
ATTTCTCAGCATAGAAAGCT+TGG + chr1_3:62634593-62634612 None:intergenic 35.0%
TAACAGCTAGATGAAATCGA+AGG - chr1_3:62634821-62634840 Msa0131700:intron 35.0%
AACAGCTAGATGAAATCGAA+GGG - chr1_3:62634822-62634841 Msa0131700:intron 35.0%
GCACTATCATATCTTTCTGA+TGG - chr1_3:62635271-62635290 Msa0131700:CDS 35.0%
ATTCAAGCTGTAATTGAAGC+TGG - chr1_3:62635307-62635326 Msa0131700:intron 35.0%
ACAATAGAAGCTCAACAAGT+CGG + chr1_3:62635342-62635361 None:intergenic 35.0%
AGTACCTCACATCTCAAATT+TGG - chr1_3:62635363-62635382 Msa0131700:intron 35.0%
TGAATGTTCTACTCTTGTTC+AGG - chr1_3:62635449-62635468 Msa0131700:CDS 35.0%
!! TAAGGTGTATGAGTTGGTTT+AGG - chr1_3:62635714-62635733 Msa0131700:intron 35.0%
!! AAGGTGTATGAGTTGGTTTA+GGG - chr1_3:62635715-62635734 Msa0131700:intron 35.0%
ACATAAGGCTTAGAGTGATA+TGG - chr1_3:62635745-62635764 Msa0131700:intron 35.0%
TTAGAGTGATATGGAGGTAA+TGG - chr1_3:62635754-62635773 Msa0131700:intron 35.0%
TAGAGTGATATGGAGGTAAT+GGG - chr1_3:62635755-62635774 Msa0131700:intron 35.0%
! GTTGAGTGTGATTTGTAAGT+GGG + chr1_3:62635788-62635807 None:intergenic 35.0%
GCACACTAACTACTAACATA+AGG - chr1_3:62635821-62635840 Msa0131700:intron 35.0%
GAATCAAACTTGAAACCTTG+AGG + chr1_3:62635909-62635928 None:intergenic 35.0%
! TTTTCAACGGCAAATGTTAG+TGG + chr1_3:62636065-62636084 None:intergenic 35.0%
TTGCCGTTGAAAAAAACTGA+TGG - chr1_3:62636072-62636091 Msa0131700:intron 35.0%
! TCTAAGCACCCTTTTATTAG+AGG - chr1_3:62636180-62636199 Msa0131700:CDS 35.0%
! ACCCTTTTATTAGAGGCAAA+TGG - chr1_3:62636187-62636206 Msa0131700:CDS 35.0%
CACCATTTGCCTCTAATAAA+AGG + chr1_3:62636192-62636211 None:intergenic 35.0%
GCAAATGGTGCTTACATATA+GGG - chr1_3:62636202-62636221 Msa0131700:CDS 35.0%
AGATGCATAACATGAACAGA+AGG + chr1_3:62636307-62636326 None:intergenic 35.0%
!! ATCTCAGTAGAAACTTGTTG+AGG + chr1_3:62636587-62636606 None:intergenic 35.0%
!! TTTGTTTGTTGGTTTGAACC+TGG - chr1_3:62636673-62636692 Msa0131700:intron 35.0%
ACCATATCAAACATTACAGC+TGG - chr1_3:62636798-62636817 Msa0131700:intron 35.0%
CCATATCAAACATTACAGCT+GGG - chr1_3:62636799-62636818 Msa0131700:intron 35.0%
! CATTTTCAATATTTCCCTGG+AGG - chr1_3:62637083-62637102 Msa0131700:intron 35.0%
TAATACACCCTTGACTTACT+AGG + chr1_3:62637180-62637199 None:intergenic 35.0%
CAGATAAGAAGATCACACAA+GGG + chr1_3:62637205-62637224 None:intergenic 35.0%
ACAGATAAGAAGATCACACA+AGG + chr1_3:62637206-62637225 None:intergenic 35.0%
! CAACCTTCAAGATGTTTTCA+AGG + chr1_3:62637264-62637283 None:intergenic 35.0%
CTTGAAAACATCTTGAAGGT+TGG - chr1_3:62637262-62637281 Msa0131700:intron 35.0%
GGAGAAGCGGATAAAAATAT+AGG - chr1_3:62637283-62637302 Msa0131700:CDS 35.0%
TGAAGATTCTTGAGACATAC+TGG - chr1_3:62637416-62637435 Msa0131700:intron 35.0%
TCTCAATCAGGATTCAACTT+CGG - chr1_3:62637478-62637497 Msa0131700:CDS 35.0%
AGTAGATGTTCATGCTTCAA+TGG - chr1_3:62637548-62637567 Msa0131700:intron 35.0%
GTAGATGTTCATGCTTCAAT+GGG - chr1_3:62637549-62637568 Msa0131700:intron 35.0%
TAGATGTTCATGCTTCAATG+GGG - chr1_3:62637550-62637569 Msa0131700:intron 35.0%
!! AATTTTGCAGGAGTTTTGTC+TGG - chr1_3:62637688-62637707 Msa0131700:intron 35.0%
ATTAAAGTCCTCCTGTATGA+TGG - chr1_3:62637717-62637736 Msa0131700:intron 35.0%
TTAAAGTCCTCCTGTATGAT+GGG - chr1_3:62637718-62637737 Msa0131700:intron 35.0%
!! ATTGGTAAATAGAGTGTTGC+TGG - chr1_3:62637794-62637813 Msa0131700:CDS 35.0%
!! TAAATAGAGTGTTGCTGGAT+TGG - chr1_3:62637799-62637818 Msa0131700:CDS 35.0%
!! GCTTGGTTTTTCATATCTCA+TGG - chr1_3:62637832-62637851 Msa0131700:CDS 35.0%
!!! TGTATGGTGGCTTGATTTTT+TGG - chr1_3:62637862-62637881 Msa0131700:CDS 35.0%
GAGAAGTCTAGTATTGTCTA+CGG + chr1_3:62637891-62637910 None:intergenic 35.0%
AAATAGGGACACTGGATATA+TGG + chr1_3:62638137-62638156 None:intergenic 35.0%
TGGAGACTATACTGCTCTAT+TGG + chr1_3:62632740-62632759 None:intergenic 40.0%
ATTCTTACGGATCTCAACCA+TGG + chr1_3:62632904-62632923 None:intergenic 40.0%
TCTCTTCACGACGATTCTTA+CGG + chr1_3:62632917-62632936 None:intergenic 40.0%
CATTTGCCAATTATGGTTGC+TGG - chr1_3:62633227-62633246 Msa0131700:exon 40.0%
TGTATAACCTCCTCAATTGG+TGG + chr1_3:62633429-62633448 None:intergenic 40.0%
GTCTGTATAACCTCCTCAAT+TGG + chr1_3:62633432-62633451 None:intergenic 40.0%
ATTGAGGAGGTTATACAGAC+TGG - chr1_3:62633432-62633451 Msa0131700:CDS 40.0%
! GTTTTGTCGAGTTTCTGATG+AGG - chr1_3:62633466-62633485 Msa0131700:CDS 40.0%
AAAGAACAAACCTGCAACTG+CGG + chr1_3:62633501-62633520 None:intergenic 40.0%
TCATACGTGTATAGGTACCA+TGG + chr1_3:62633647-62633666 None:intergenic 40.0%
GACAAGCATCATACGTGTAT+AGG + chr1_3:62633655-62633674 None:intergenic 40.0%
GATGCATACTTGCATAGGTA+TGG + chr1_3:62634065-62634084 None:intergenic 40.0%
ACATGGATGCATACTTGCAT+AGG + chr1_3:62634070-62634089 None:intergenic 40.0%
GCTTTGACAAACATAGCTTC+TGG - chr1_3:62634144-62634163 Msa0131700:intron 40.0%
ACTAAGGTGGTAATTGACCA+TGG - chr1_3:62634180-62634199 Msa0131700:intron 40.0%
CTAAGGTGGTAATTGACCAT+GGG - chr1_3:62634181-62634200 Msa0131700:intron 40.0%
TAAGGTGGTAATTGACCATG+GGG - chr1_3:62634182-62634201 Msa0131700:intron 40.0%
GCAAGGAGCTTCACAAAAAT+TGG + chr1_3:62634213-62634232 None:intergenic 40.0%
!!! TTTTTGTTTTGCAGGCTGTG+TGG - chr1_3:62634470-62634489 Msa0131700:intron 40.0%
!!! TTTTGTTTTGCAGGCTGTGT+GGG - chr1_3:62634471-62634490 Msa0131700:intron 40.0%
AGAACAAGATCACGACATCT+GGG + chr1_3:62634523-62634542 None:intergenic 40.0%
AGATGTCGTGATCTTGTTCT+CGG - chr1_3:62634523-62634542 Msa0131700:intron 40.0%
GACACTTTCAAACTTCTGCA+GGG - chr1_3:62634621-62634640 Msa0131700:intron 40.0%
ACACTTTCAAACTTCTGCAG+GGG - chr1_3:62634622-62634641 Msa0131700:intron 40.0%
TTTCATCTAGCTGTTACAGC+AGG + chr1_3:62634817-62634836 None:intergenic 40.0%
ACAGCTAGATGAAATCGAAG+GGG - chr1_3:62634823-62634842 Msa0131700:intron 40.0%
GTTGTGTATGTGAACCTGAA+GGG - chr1_3:62635076-62635095 Msa0131700:intron 40.0%
AATAGAAGCTCAACAAGTCG+GGG + chr1_3:62635340-62635359 None:intergenic 40.0%
CAATAGAAGCTCAACAAGTC+GGG + chr1_3:62635341-62635360 None:intergenic 40.0%
! ACAGCCAAATTTGAGATGTG+AGG + chr1_3:62635370-62635389 None:intergenic 40.0%
! GAATTAGCACTGAAGGAGAT+GGG + chr1_3:62635477-62635496 None:intergenic 40.0%
ACTGTTGGAAACATTGTCAC+TGG - chr1_3:62635508-62635527 Msa0131700:CDS 40.0%
! TGGAGATGATTTGCAAACTC+AGG - chr1_3:62635528-62635547 Msa0131700:CDS 40.0%
ACAACAACATGAGATACTCC+TGG + chr1_3:62635563-62635582 None:intergenic 40.0%
GGAAAATCACTGAGATCGAA+AGG + chr1_3:62635612-62635631 None:intergenic 40.0%
TACTGTTAGCAGGGGTTATA+AGG - chr1_3:62635696-62635715 Msa0131700:intron 40.0%
GGGTTATAAGGTGTATGAGT+TGG - chr1_3:62635708-62635727 Msa0131700:intron 40.0%
!! AGGTGTATGAGTTGGTTTAG+GGG - chr1_3:62635716-62635735 Msa0131700:intron 40.0%
TAAGGCTTAGAGTGATATGG+AGG - chr1_3:62635748-62635767 Msa0131700:intron 40.0%
! GGTTGAGTGTGATTTGTAAG+TGG + chr1_3:62635789-62635808 None:intergenic 40.0%
AGTTAGTGTGCTCTGTTAGT+GGG + chr1_3:62635812-62635831 None:intergenic 40.0%
TAGTTAGTGTGCTCTGTTAG+TGG + chr1_3:62635813-62635832 None:intergenic 40.0%
TCAAACTTGAAACCTTGAGG+AGG + chr1_3:62635906-62635925 None:intergenic 40.0%
GGCAAATGGTGCTTACATAT+AGG - chr1_3:62636201-62636220 Msa0131700:CDS 40.0%
TGCTTACATATAGGGACAGA+GGG - chr1_3:62636210-62636229 Msa0131700:CDS 40.0%
CCCAGCTGTAATGTTTGATA+TGG + chr1_3:62636802-62636821 None:intergenic 40.0%
TGGGAATAAACAGCAGATTC+AGG - chr1_3:62636818-62636837 Msa0131700:intron 40.0%
TATTTAACAGGCTGTGATCG+AGG - chr1_3:62636933-62636952 Msa0131700:intron 40.0%
GTGATCGAGGCCAATATATT+TGG - chr1_3:62636946-62636965 Msa0131700:intron 40.0%
CACCAGAGGACCAAATATAT+TGG + chr1_3:62636959-62636978 None:intergenic 40.0%
ATATCAAGAAAGAGGCTGCT+TGG - chr1_3:62637004-62637023 Msa0131700:intron 40.0%
TATCAAGAAAGAGGCTGCTT+GGG - chr1_3:62637005-62637024 Msa0131700:intron 40.0%
GCTATCTCAAATGCTACATC+TGG - chr1_3:62637027-62637046 Msa0131700:intron 40.0%
ATCTCAAATGCTACATCTGG+TGG - chr1_3:62637030-62637049 Msa0131700:intron 40.0%
TACTAGGTACCTGTCAAACA+TGG + chr1_3:62637164-62637183 None:intergenic 40.0%
ACAGGTACCTAGTAAGTCAA+GGG - chr1_3:62637170-62637189 Msa0131700:intron 40.0%
AACTGTCACAATCCTAGGAT+CGG + chr1_3:62637230-62637249 None:intergenic 40.0%
AGACAAACTGTCACAATCCT+AGG + chr1_3:62637235-62637254 None:intergenic 40.0%
TAGGATTGTGACAGTTTGTC+TGG - chr1_3:62637234-62637253 Msa0131700:intron 40.0%
ATTGTGACAGTTTGTCTGGA+AGG - chr1_3:62637238-62637257 Msa0131700:intron 40.0%
AGGCCTTGAAAACATCTTGA+AGG - chr1_3:62637258-62637277 Msa0131700:intron 40.0%
CTCAGCATCATCAATCATCT+GGG + chr1_3:62637335-62637354 None:intergenic 40.0%
!! CAGATGATTGATGATGCTGA+GGG - chr1_3:62637334-62637353 Msa0131700:CDS 40.0%
!! AGATGATTGATGATGCTGAG+GGG - chr1_3:62637335-62637354 Msa0131700:CDS 40.0%
GATTCTTGAGACATACTGGT+TGG - chr1_3:62637420-62637439 Msa0131700:intron 40.0%
ATTCGCAAACGAACCAGAAA+AGG + chr1_3:62637593-62637612 None:intergenic 40.0%
! TTCGTTTGCGAATTTCTGGA+TGG - chr1_3:62637600-62637619 Msa0131700:intron 40.0%
TCGTTTCTTTGTGTCCAACA+GGG - chr1_3:62637765-62637784 Msa0131700:intron 40.0%
ATCTCATGGTGACAGATGTA+TGG - chr1_3:62637846-62637865 Msa0131700:CDS 40.0%
GTTACGATTGTGGGTCTATT+TGG - chr1_3:62638011-62638030 Msa0131700:five_prime_UTR 40.0%
TAAAAACTCCAACGAGCATC+TGG + chr1_3:62638044-62638063 None:intergenic 40.0%
! TCGTTGGAGTTTTTACCCAT+TGG - chr1_3:62638049-62638068 Msa0131700:five_prime_UTR 40.0%
GTTTAGGAGGAAGTGATCGA+CGG + chr1_3:62632780-62632799 None:intergenic 45.0%
ACGATACGACATCGTTTAGG+AGG + chr1_3:62632793-62632812 None:intergenic 45.0%
TGGACGATACGACATCGTTT+AGG + chr1_3:62632796-62632815 None:intergenic 45.0%
TCTCAACCATGGTGTCTTCA+CGG + chr1_3:62632893-62632912 None:intergenic 45.0%
TTGCTCAAAAAGAGACGCGA+AGG - chr1_3:62632939-62632958 Msa0131700:three_prime_UTR 45.0%
AACGACGTTAGAGTGAAGAG+CGG + chr1_3:62632988-62633007 None:intergenic 45.0%
CTCTAACGTCGTTGAGAAGA+AGG - chr1_3:62632995-62633014 Msa0131700:three_prime_UTR 45.0%
CACACACCAGCAACCATAAT+TGG + chr1_3:62633236-62633255 None:intergenic 45.0%
CAATTATGGTTGCTGGTGTG+TGG - chr1_3:62633234-62633253 Msa0131700:CDS 45.0%
AGAACGTACTCCACCAATTG+AGG - chr1_3:62633416-62633435 Msa0131700:CDS 45.0%
CTAGATAGCGTTACGTACCA+TGG - chr1_3:62633627-62633646 Msa0131700:intron 45.0%
TCTGCCGCGAGTGAAATTTA+TGG - chr1_3:62633698-62633717 Msa0131700:intron 45.0%
TCTGCCGCGAGTGAAATTTA+TGG - chr1_3:62633698-62633717 Msa0131700:intron 45.0%
CATACTTGCATAGGTATGGC+GGG + chr1_3:62634061-62634080 None:intergenic 45.0%
GCATACTTGCATAGGTATGG+CGG + chr1_3:62634062-62634081 None:intergenic 45.0%
TAACGTCGTGTTGCAGTTTG+AGG - chr1_3:62634113-62634132 Msa0131700:intron 45.0%
AGCTATGTTTGTCAAAGCCC+AGG + chr1_3:62634142-62634161 None:intergenic 45.0%
CATCGTCACTAGAAGAAGCA+AGG + chr1_3:62634230-62634249 None:intergenic 45.0%
TGGGCATTAGGAAATGTTGC+TGG - chr1_3:62634490-62634509 Msa0131700:intron 45.0%
GAGAACAAGATCACGACATC+TGG + chr1_3:62634524-62634543 None:intergenic 45.0%
CTATGCTGAGAAATGCTACC+TGG - chr1_3:62634599-62634618 Msa0131700:intron 45.0%
!! GCAGAAGTTTGAAAGTGTCC+AGG + chr1_3:62634620-62634639 None:intergenic 45.0%
GGACACTTTCAAACTTCTGC+AGG - chr1_3:62634620-62634639 Msa0131700:intron 45.0%
CAGCTAGATGAAATCGAAGG+GGG - chr1_3:62634824-62634843 Msa0131700:intron 45.0%
GGTTGTGTATGTGAACCTGA+AGG - chr1_3:62635075-62635094 Msa0131700:intron 45.0%
TGAATAAGACCAGCAAGAGC+AGG + chr1_3:62635214-62635233 None:intergenic 45.0%
! AAGATATGATAGTGCCCAGC+AGG + chr1_3:62635266-62635285 None:intergenic 45.0%
! GGAATTAGCACTGAAGGAGA+TGG + chr1_3:62635478-62635497 None:intergenic 45.0%
! AGAGCAGGAATTAGCACTGA+AGG + chr1_3:62635484-62635503 None:intergenic 45.0%
ATTCCTGCTCTTCGTACTGT+TGG - chr1_3:62635493-62635512 Msa0131700:CDS 45.0%
TTTCCAACAGTACGAAGAGC+AGG + chr1_3:62635499-62635518 None:intergenic 45.0%
!! AAACTCAGGTATTGACCACC+AGG - chr1_3:62635542-62635561 Msa0131700:CDS 45.0%
ACAACATGAGATACTCCTGG+TGG + chr1_3:62635560-62635579 None:intergenic 45.0%
! CGATCTCAGTGATTTTCCTG+TGG - chr1_3:62635614-62635633 Msa0131700:intron 45.0%
!! GGTGTATGAGTTGGTTTAGG+GGG - chr1_3:62635717-62635736 Msa0131700:intron 45.0%
!! GTGTATGAGTTGGTTTAGGG+GGG - chr1_3:62635718-62635737 Msa0131700:intron 45.0%
GTTTAGGGGGGAGAAACATA+AGG - chr1_3:62635730-62635749 Msa0131700:intron 45.0%
TTAGTGTGCTCTGTTAGTGG+GGG + chr1_3:62635810-62635829 None:intergenic 45.0%
GTTAGTGTGCTCTGTTAGTG+GGG + chr1_3:62635811-62635830 None:intergenic 45.0%
AAGGCTTAGAGTAACCCTCT+TGG - chr1_3:62635840-62635859 Msa0131700:intron 45.0%
AGGCTTAGAGTAACCCTCTT+GGG - chr1_3:62635841-62635860 Msa0131700:intron 45.0%
TTAGAGTAACCCTCTTGGGT+TGG - chr1_3:62635845-62635864 Msa0131700:intron 45.0%
!! ATGGTATTGGCTTGGGATCT+GGG - chr1_3:62635872-62635891 Msa0131700:intron 45.0%
CTAACTTAGCCCACCCAAAT+TGG + chr1_3:62635940-62635959 None:intergenic 45.0%
TAAGGCTTAGAGTGATAGGG+AGG - chr1_3:62635981-62636000 Msa0131700:intron 45.0%
TTAGAGTGATAGGGAGGTCA+TGG - chr1_3:62635987-62636006 Msa0131700:intron 45.0%
GTTAGTGTGCTCTGTTAGTG+GGG + chr1_3:62635811-62635830 None:intergenic 45.0%
GGTTAGTGTGCTCTGTTAGT+GGG + chr1_3:62636044-62636063 None:intergenic 45.0%
TGGTTAGTGTGCTCTGTTAG+TGG + chr1_3:62636045-62636064 None:intergenic 45.0%
TGCTTAGATATAGGGACGGA+GGG + chr1_3:62636168-62636187 None:intergenic 45.0%
! AGGGTGCTTAGATATAGGGA+CGG + chr1_3:62636172-62636191 None:intergenic 45.0%
GTGCTTACATATAGGGACAG+AGG - chr1_3:62636209-62636228 Msa0131700:CDS 45.0%
TGATGATAACCTATGGGGCA+AGG + chr1_3:62636701-62636720 None:intergenic 45.0%
GGCCAATATATTTGGTCCTC+TGG - chr1_3:62636954-62636973 Msa0131700:intron 45.0%
!!! TTTTGAAGCAGACTCACCAG+AGG + chr1_3:62636973-62636992 None:intergenic 45.0%
GACAGGTACCTAGTAAGTCA+AGG - chr1_3:62637169-62637188 Msa0131700:intron 45.0%
TTCTTATCTGTCCCGATCCT+AGG - chr1_3:62637215-62637234 Msa0131700:intron 45.0%
ACTGTCACAATCCTAGGATC+GGG + chr1_3:62637229-62637248 None:intergenic 45.0%
CATCTTGAAGGTTGGAGAAG+CGG - chr1_3:62637270-62637289 Msa0131700:intron 45.0%
CCTCAGCATCATCAATCATC+TGG + chr1_3:62637336-62637355 None:intergenic 45.0%
!! CCAGATGATTGATGATGCTG+AGG - chr1_3:62637333-62637352 Msa0131700:CDS 45.0%
TCTCTGTGTTGTCATGACTC+TGG + chr1_3:62637381-62637400 None:intergenic 45.0%
! TCTTGAGACATACTGGTTGG+AGG - chr1_3:62637423-62637442 Msa0131700:intron 45.0%
! ATTCAACTTCGGTAGCTCTG+AGG - chr1_3:62637489-62637508 Msa0131700:CDS 45.0%
! CTGGTTCGTTTGCGAATTTC+TGG - chr1_3:62637596-62637615 Msa0131700:intron 45.0%
GTCGTTTCTTTGTGTCCAAC+AGG - chr1_3:62637764-62637783 Msa0131700:intron 45.0%
TTACCAATGTTGGACCCTGT+TGG + chr1_3:62637782-62637801 None:intergenic 45.0%
TCATGGTGACAGATGTATGG+TGG - chr1_3:62637849-62637868 Msa0131700:CDS 45.0%
ATCGACGAAAATAGGGACAC+TGG + chr1_3:62638145-62638164 None:intergenic 45.0%
!!! TATTATTATTTTCTAAATAT+TGG - chr1_3:62634365-62634384 Msa0131700:intron 5.0%
!!! ATTATTATTTTCTAAATATT+GGG - chr1_3:62634366-62634385 Msa0131700:intron 5.0%
!! CTTAAAAAAAAATAAAAATA+AGG - chr1_3:62635963-62635982 Msa0131700:intron 5.0%
GATCGACGGAGAAGAGAAAG+AGG + chr1_3:62632766-62632785 None:intergenic 50.0%
ATCGTCCAAACGCAAACTCC+AGG - chr1_3:62632808-62632827 Msa0131700:three_prime_UTR 50.0%
ACGTTAGAGTGAAGAGCGGA+AGG + chr1_3:62632984-62633003 None:intergenic 50.0%
ACGTACTCCACCAATTGAGG+AGG - chr1_3:62633419-62633438 Msa0131700:CDS 50.0%
TCACTCGCGGCAGAATAATG+AGG + chr1_3:62633692-62633711 None:intergenic 50.0%
CAAAAATTGGGACAGCCCCA+TGG + chr1_3:62634200-62634219 None:intergenic 50.0%
TAGTGACGATGTCCGTGAAC+AGG - chr1_3:62634239-62634258 Msa0131700:intron 50.0%
CGTGATCTTGTTCTCGGTCA+CGG - chr1_3:62634529-62634548 Msa0131700:intron 50.0%
GTGATCTTGTTCTCGGTCAC+GGG - chr1_3:62634530-62634549 Msa0131700:intron 50.0%
TGATCTTGTTCTCGGTCACG+GGG - chr1_3:62634531-62634550 Msa0131700:intron 50.0%
ACCTGATCAAAAGGAGGCTG+TGG + chr1_3:62634652-62634671 None:intergenic 50.0%
GGTAATGCACTCCTCTGACA+AGG - chr1_3:62634753-62634772 Msa0131700:intron 50.0%
GTGTATGTGAACCTGAAGGG+TGG - chr1_3:62635079-62635098 Msa0131700:intron 50.0%
CAGATGGATAACCACCCTTC+AGG + chr1_3:62635093-62635112 None:intergenic 50.0%
AAGTCTTGACTGATGCCTGC+TGG - chr1_3:62635248-62635267 Msa0131700:CDS 50.0%
AGTCTTGACTGATGCCTGCT+GGG - chr1_3:62635249-62635268 Msa0131700:CDS 50.0%
!! TTGGGTTGGCCTGATGGTAT+TGG - chr1_3:62635859-62635878 Msa0131700:intron 50.0%
!! TTGGCCTGATGGTATTGGCT+TGG - chr1_3:62635864-62635883 Msa0131700:intron 50.0%
!! TGGCCTGATGGTATTGGCTT+GGG - chr1_3:62635865-62635884 Msa0131700:intron 50.0%
GATCCCAAGCCAATACCATC+AGG + chr1_3:62635871-62635890 None:intergenic 50.0%
!! GATGGTATTGGCTTGGGATC+TGG - chr1_3:62635871-62635890 Msa0131700:intron 50.0%
!! TGGTATTGGCTTGGGATCTG+GGG - chr1_3:62635873-62635892 Msa0131700:intron 50.0%
TGATTCCCCCAGTGCCAATT+TGG - chr1_3:62635923-62635942 Msa0131700:intron 50.0%
GATTCCCCCAGTGCCAATTT+GGG - chr1_3:62635924-62635943 Msa0131700:intron 50.0%
! GACGGAGGGAGTATATCTGA+AGG + chr1_3:62636154-62636173 None:intergenic 50.0%
GTGCTTAGATATAGGGACGG+AGG + chr1_3:62636169-62636188 None:intergenic 50.0%
AGCTGGTCATCTCACAATCC+AGG + chr1_3:62636529-62636548 None:intergenic 50.0%
GCATCAAGAAGGAAGCTTGC+TGG - chr1_3:62636775-62636794 Msa0131700:intron 50.0%
!! GATTGATGATGCTGAGGGGT+TGG - chr1_3:62637339-62637358 Msa0131700:CDS 50.0%
CTGTGTTGTCATGACTCTGG+AGG + chr1_3:62637378-62637397 None:intergenic 50.0%
AGCTTGTCCCATCATACAGG+AGG + chr1_3:62637728-62637747 None:intergenic 50.0%
! TCCTGTATGATGGGACAAGC+TGG - chr1_3:62637727-62637746 Msa0131700:intron 50.0%
! CCTGTATGATGGGACAAGCT+GGG - chr1_3:62637728-62637747 Msa0131700:intron 50.0%
! CTGTATGATGGGACAAGCTG+GGG - chr1_3:62637729-62637748 Msa0131700:intron 50.0%
TGTCCAACAGGGTCCAACAT+TGG - chr1_3:62637776-62637795 Msa0131700:CDS 50.0%
!! AGAGTGTTGCTGGATTGGCT+TGG - chr1_3:62637804-62637823 Msa0131700:CDS 50.0%
!! GAGTGTTGCTGGATTGGCTT+GGG - chr1_3:62637805-62637824 Msa0131700:CDS 50.0%
GCAAAATGCCAGATGCTCGT+TGG - chr1_3:62638033-62638052 Msa0131700:five_prime_UTR 50.0%
CGGAGAAGAGAAAGAGGCAG+TGG + chr1_3:62632760-62632779 None:intergenic 55.0%
TCGGTCCTGGAGTTTGCGTT+TGG + chr1_3:62632816-62632835 None:intergenic 55.0%
AAACGCAAACTCCAGGACCG+AGG - chr1_3:62632815-62632834 Msa0131700:three_prime_UTR 55.0%
!! CGACCTTGTATCGGTTGCGA+CGG + chr1_3:62632842-62632861 None:intergenic 55.0%
CATCGACGGCGACCTTGTAT+CGG + chr1_3:62632851-62632870 None:intergenic 55.0%
AGAGCGGAAGGAATCTGCTG+AGG + chr1_3:62632972-62632991 None:intergenic 55.0%
GGAAGACTTTCCGCAGTTGC+AGG - chr1_3:62633488-62633507 Msa0131700:CDS 55.0%
!! TGCATAGGTATGGCGGGTAC+AGG + chr1_3:62634055-62634074 None:intergenic 55.0%
! TGTTGCAGTTTGAGGCAGCC+TGG - chr1_3:62634121-62634140 Msa0131700:intron 55.0%
! GTTGCAGTTTGAGGCAGCCT+GGG - chr1_3:62634122-62634141 Msa0131700:intron 55.0%
TTGCAGGCTGTGTGGGCATT+AGG - chr1_3:62634478-62634497 Msa0131700:intron 55.0%
!! CGGGGCTTTGGTTCCTCTTT+TGG - chr1_3:62634549-62634568 Msa0131700:intron 55.0%
! GCCACAGCCTCCTTTTGATC+AGG - chr1_3:62634648-62634667 Msa0131700:intron 55.0%
ACCATCAGGCCAACCCAAGA+GGG + chr1_3:62635857-62635876 None:intergenic 55.0%
TACCATCAGGCCAACCCAAG+AGG + chr1_3:62635858-62635877 None:intergenic 55.0%
!! GGTATTGGCTTGGGATCTGG+GGG - chr1_3:62635874-62635893 Msa0131700:intron 55.0%
AGCCCACCCAAATTGGCACT+GGG + chr1_3:62635933-62635952 None:intergenic 55.0%
TAGCCCACCCAAATTGGCAC+TGG + chr1_3:62635934-62635953 None:intergenic 55.0%
GAAGACGAGACTATGCCTCC+AGG - chr1_3:62637448-62637467 Msa0131700:intron 55.0%
!! GATTGAGAAGCATCGCCTGG+AGG + chr1_3:62637466-62637485 None:intergenic 55.0%
!! CCTGATTGAGAAGCATCGCC+TGG + chr1_3:62637469-62637488 None:intergenic 55.0%
CCAGGCGATGCTTCTCAATC+AGG - chr1_3:62637466-62637485 Msa0131700:CDS 55.0%
CCCAGCTTGTCCCATCATAC+AGG + chr1_3:62637731-62637750 None:intergenic 55.0%
!! GGATTGGCTTGGGCAATGCT+TGG - chr1_3:62637815-62637834 Msa0131700:CDS 55.0%
!! GTATCGGTTGCGACGGACCT+CGG + chr1_3:62632835-62632854 None:intergenic 60.0%
GGTCCGTCGCAACCGATACA+AGG - chr1_3:62632836-62632855 Msa0131700:three_prime_UTR 60.0%
CCATGGTGTCTTCACGGCGA+CGG + chr1_3:62632887-62632906 None:intergenic 60.0%
TGTTCTCGGTCACGGGGCTT+TGG - chr1_3:62634537-62634556 Msa0131700:intron 60.0%
! CCAGCAAGAGCAGGAAGTGC+AGG + chr1_3:62635205-62635224 None:intergenic 60.0%
CCTGCACTTCCTGCTCTTGC+TGG - chr1_3:62635202-62635221 Msa0131700:intron 60.0%
!! ACCCTCTTGGGTTGGCCTGA+TGG - chr1_3:62635853-62635872 Msa0131700:intron 60.0%
! TGGGGGTATGCTCCTCCTCA+AGG - chr1_3:62635891-62635910 Msa0131700:intron 60.0%
TCCCCCAGTGCCAATTTGGG+TGG - chr1_3:62635927-62635946 Msa0131700:intron 60.0%
! CCCACCCAAATTGGCACTGG+GGG + chr1_3:62635931-62635950 None:intergenic 60.0%
CCCCCAGTGCCAATTTGGGT+GGG - chr1_3:62635928-62635947 Msa0131700:intron 60.0%
GCCCACCCAAATTGGCACTG+GGG + chr1_3:62635932-62635951 None:intergenic 60.0%
AACCTGGTGCCTTGCCCCAT+AGG - chr1_3:62636689-62636708 Msa0131700:intron 60.0%
! AACCTATGGGGCAAGGCACC+AGG + chr1_3:62636694-62636713 None:intergenic 60.0%
GTCGCCGTCGATGCCGAAGA+AGG - chr1_3:62632858-62632877 Msa0131700:three_prime_UTR 65.0%
! GCGGCCTTCTTCGGCATCGA+CGG + chr1_3:62632865-62632884 None:intergenic 65.0%
TGGTGTCTTCACGGCGACGG+CGG + chr1_3:62632884-62632903 None:intergenic 65.0%
CCGTCGCCGTGAAGACACCA+TGG - chr1_3:62632884-62632903 Msa0131700:three_prime_UTR 65.0%
GTTGCGACGGACCTCGGTCC+TGG + chr1_3:62632829-62632848 None:intergenic 70.0%
ACGGCGACGGCGGCCTTCTT+CGG + chr1_3:62632874-62632893 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 62632528 62638255 62632528 ID=Msa0131700;Name=Msa0131700
chr1_3 mRNA 62632528 62638255 62632528 ID=Msa0131700-mRNA-1;Parent=Msa0131700;Name=Msa0131700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=273|1|1|1|0.9|0.81|11|604|533
chr1_3 exon 62632528 62633085 62632528 ID=Msa0131700-mRNA-1:exon:20938;Parent=Msa0131700-mRNA-1
chr1_3 exon 62633185 62633609 62633185 ID=Msa0131700-mRNA-1:exon:20937;Parent=Msa0131700-mRNA-1
chr1_3 exon 62633713 62633840 62633713 ID=Msa0131700-mRNA-1:exon:20936;Parent=Msa0131700-mRNA-1
chr1_3 exon 62633944 62634072 62633944 ID=Msa0131700-mRNA-1:exon:20935;Parent=Msa0131700-mRNA-1
chr1_3 exon 62635234 62635312 62635234 ID=Msa0131700-mRNA-1:exon:20934;Parent=Msa0131700-mRNA-1
chr1_3 exon 62635424 62635587 62635424 ID=Msa0131700-mRNA-1:exon:20933;Parent=Msa0131700-mRNA-1
chr1_3 exon 62636114 62636299 62636114 ID=Msa0131700-mRNA-1:exon:20932;Parent=Msa0131700-mRNA-1
chr1_3 exon 62636523 62636654 62636523 ID=Msa0131700-mRNA-1:exon:20931;Parent=Msa0131700-mRNA-1
chr1_3 exon 62637274 62637365 62637274 ID=Msa0131700-mRNA-1:exon:20930;Parent=Msa0131700-mRNA-1
chr1_3 exon 62637466 62637562 62637466 ID=Msa0131700-mRNA-1:exon:20929;Parent=Msa0131700-mRNA-1
chr1_3 exon 62637767 62638255 62637767 ID=Msa0131700-mRNA-1:exon:20928;Parent=Msa0131700-mRNA-1
chr1_3 five_prime_UTR 62637983 62638255 62637983 ID=Msa0131700-mRNA-1:five_prime_utr;Parent=Msa0131700-mRNA-1
chr1_3 CDS 62637767 62637982 62637767 ID=Msa0131700-mRNA-1:cds;Parent=Msa0131700-mRNA-1
chr1_3 CDS 62637466 62637562 62637466 ID=Msa0131700-mRNA-1:cds;Parent=Msa0131700-mRNA-1
chr1_3 CDS 62637274 62637365 62637274 ID=Msa0131700-mRNA-1:cds;Parent=Msa0131700-mRNA-1
chr1_3 CDS 62636523 62636654 62636523 ID=Msa0131700-mRNA-1:cds;Parent=Msa0131700-mRNA-1
chr1_3 CDS 62636114 62636299 62636114 ID=Msa0131700-mRNA-1:cds;Parent=Msa0131700-mRNA-1
chr1_3 CDS 62635424 62635587 62635424 ID=Msa0131700-mRNA-1:cds;Parent=Msa0131700-mRNA-1
chr1_3 CDS 62635234 62635312 62635234 ID=Msa0131700-mRNA-1:cds;Parent=Msa0131700-mRNA-1
chr1_3 CDS 62633944 62634072 62633944 ID=Msa0131700-mRNA-1:cds;Parent=Msa0131700-mRNA-1
chr1_3 CDS 62633713 62633840 62633713 ID=Msa0131700-mRNA-1:cds;Parent=Msa0131700-mRNA-1
chr1_3 CDS 62633231 62633609 62633231 ID=Msa0131700-mRNA-1:cds;Parent=Msa0131700-mRNA-1
chr1_3 three_prime_UTR 62633185 62633230 62633185 ID=Msa0131700-mRNA-1:three_prime_utr;Parent=Msa0131700-mRNA-1
chr1_3 three_prime_UTR 62632528 62633085 62632528 ID=Msa0131700-mRNA-1:three_prime_utr;Parent=Msa0131700-mRNA-1
Gene Sequence

>Msa0131700

ATGTCGTATCGTCCAAACGCAAACTCCAGGACCGAGGTCCGTCGCAACCGATACAAGGTCGCCGTCGATGCCGAAGAAGGCCGCCGTCGCCGTGAAGACACCATGGTTGAGATCCGTAAGAATCGTCGTGAAGAGAGTTTGCTCAAAAAGAGACGCGAAGGTCTTCAACCTCAGCAGATTCCTTCCGCTCTTCACTCTAACGTCGTTGAGAAGAAGTTGGAACATTTGCCAATTATGGTTGCTGGTGTGTGGAGTGATGATAATAACTTGCAGCTTGAATCAACGACTCAGTTTCGAAAGCTGCTATCAATTGAACGTACTCCACCAATTGAGGAGGTTATACAGACTGGTGTTGTTTCTCGTTTTGTCGAGTTTCTGATGAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCAGCCTGGGCTTTGACAAACATAGCTTCTGGAACATCTGAAAACACTAAGGTGGTAATTGACCATGGGGCTGTCCCAATTTTTGTGAAGCTCCTTGCTTCTTCTAGTGACGATGTCCGTGAACAGGCTGTGTGGGCATTAGGAAATGTTGCTGGAGATTCTCCCAGATGTCGTGATCTTGTTCTCGGTCACGGGGCTTTGGTTCCTCTTTTGGCACAATTGAATGAGCATGCCAAGCTTTCTATGCTGAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCTGGTCTTATTCATTCAAATGATGAAGAAGTCTTGACTGATGCCTGCTGGGCACTATCATATCTTTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTTCTATTGCACCCATCTCCTTCAGTGCTAATTCCTGCTCTTCGTACTGTTGGAAACATTGTCACTGGAGATGATTTGCAAACTCAGGTTATCATCAATCATGAGGCTCTTCCTTGTCTATATAATCTGTTGACCAATAATTATAAGAAAAGCATCAAGAAGGAAGCTTGCTGGACCATATCAAACATTACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATCGAGGCCAATATATTTGGTCCTCTGGTGAGTCTGCTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCTGGTGGATCTCACGAACAAATCAAGTACCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCCGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTTGGAGAAGCGGATAAAAATATAGGCAATAATGGTGACGTGAATCTATATGCCCAGATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGGTTGGAGGAAGAAGACGAGACTATGCCTCCAGGCGATGCTTCTCAATCAGGATTCAACTTCGGTAGCTCTGAGGTTCCTTCTGTGCCTTCGGGTGGATTTAACTTCAATCAGTAG
Protein sequence

>Msa0131700

MSYRPNANSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLLKKRREGLQPQQIPSALHSNVVEKKLEHLPIMVAGVWSDDNNLQLESTTQFRKLLSIERTPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASSSDDVREQAVWALGNVAGDSPRCRDLVLGHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDLQTQVIINHEALPCLYNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIFGPLVSLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNNGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSEVPSVPSGGFNFNQ*