AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0416960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0416960 MtrunA17_Chr3g0114041 96.115 489 19 0 1 489 1 489 0.0 977
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0416960 AT1G09870.1 66.255 486 150 4 2 482 3 479 0.0 681

Find 137 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCAAAGGTTTCTCCTTC+TGG 0.189619 3_2:+64053973 None:intergenic
GATAAGGGAGTTGGATAATT+TGG 0.198521 3_2:-64057168 Msa0416960:CDS
AACAAACTAAAATTCATCTT+TGG 0.224993 3_2:+64053341 None:intergenic
TCTGCATTAGTTGGGCGATA+TGG 0.234052 3_2:-64055864 Msa0416960:CDS
CTCACCTGAGTTGCCTTTAT+AGG 0.241933 3_2:+64056927 None:intergenic
GGAAAAGCCACTGAAATATT+TGG 0.256257 3_2:+64053385 None:intergenic
CTGAAACGTGTTAGAGAAAA+TGG 0.264760 3_2:-64057984 Msa0416960:exon
AGAGTTCCGTCTTGGTTAAA+TGG 0.267555 3_2:-64057089 Msa0416960:CDS
ACCACAAGATTTAAATGAAT+TGG 0.280692 3_2:+64057688 None:intergenic
CGATACCACTTAACAAATTC+AGG 0.284250 3_2:-64053272 Msa0416960:three_prime_UTR
ACAAACTAAAATTCATCTTT+GGG 0.293290 3_2:+64053342 None:intergenic
CTGCCAGACAAGAATGTCTT+TGG 0.320975 3_2:-64053200 Msa0416960:three_prime_UTR
TAAACTTAAGGAACCTATCT+TGG 0.324606 3_2:-64055898 Msa0416960:CDS
GGTTACGAGAGCAGGATTTC+AGG 0.325108 3_2:-64055944 Msa0416960:intron
TCAGCTAGTGCTGTGGCATT+TGG 0.337150 3_2:-64056629 Msa0416960:CDS
CAGTGAAATCGATGTAAAAT+TGG 0.339679 3_2:+64053220 None:intergenic
GCGTTTATTCTGAAGGGTTA+TGG 0.350250 3_2:-64055203 Msa0416960:CDS
AATTGTTTGAACTTGGAATC+AGG 0.360982 3_2:-64057004 Msa0416960:CDS
ATTAACAGAACAAGAGTGAT+TGG 0.372565 3_2:+64057956 None:intergenic
GGTTTATTTCTTGAAGAGTC+TGG 0.374217 3_2:-64054112 Msa0416960:intron
GAAAGAGCGGAAATTGTCTT+TGG 0.377125 3_2:-64057114 Msa0416960:CDS
AGCCTCCACAGAAAAGAAAA+TGG 0.377131 3_2:-64053941 Msa0416960:CDS
GGATAATTTGGCAGCTCAAT+TGG 0.379258 3_2:-64057156 Msa0416960:CDS
CTGCATTAGTTGGGCGATAT+GGG 0.380850 3_2:-64055863 Msa0416960:CDS
GAGGAAGAATTGTTTGAACT+TGG 0.384481 3_2:-64057011 Msa0416960:CDS
TCCTTGGCATGGAAGGCTTA+AGG 0.388404 3_2:-64057057 Msa0416960:CDS
TTCAGTGGCAATGGAACTCT+TGG 0.391689 3_2:-64056596 Msa0416960:CDS
TCCAGACATATATCCTATAA+AGG 0.391852 3_2:-64056940 Msa0416960:CDS
GAGATTACATCTGCATTAGT+TGG 0.394671 3_2:-64055873 Msa0416960:CDS
AAATCACTAAATTATAGAAT+GGG 0.395225 3_2:-64055179 Msa0416960:CDS
CCTTGGCATGGAAGGCTTAA+GGG 0.397783 3_2:-64057056 Msa0416960:CDS
GTGTACATAGATTACATTGC+TGG 0.401467 3_2:-64055246 Msa0416960:intron
AAGCTTACCGGCATTGGAAT+GGG 0.404546 3_2:+64053804 None:intergenic
TGAATTGGAGTACATCCTTC+AGG 0.410928 3_2:+64057703 None:intergenic
GTCCCATTCTCATGTCTGCT+TGG 0.418022 3_2:-64054133 Msa0416960:CDS
CTGTCCGTTTGAAGTATTCA+AGG 0.418996 3_2:-64053603 Msa0416960:intron
CTCAATTGGAAGATCTTGTA+AGG 0.426286 3_2:-64057142 Msa0416960:CDS
CTGCAAAAGCTTACCGGCAT+TGG 0.427821 3_2:+64053798 None:intergenic
TATCAAGATTAACACTGTTA+AGG 0.429904 3_2:+64053070 None:intergenic
TCTCTGGTTCTTATGTAAAC+AGG 0.431034 3_2:-64055811 Msa0416960:intron
AGAGTATAAAACTTCTCTTT+CGG 0.434634 3_2:-64058039 None:intergenic
TCCAATTCATTTAAATCTTG+TGG 0.437346 3_2:-64057689 Msa0416960:intron
CTGTATAGTTGTCCTGCGTC+AGG 0.438844 3_2:-64053873 Msa0416960:CDS
CTCCAACAAAGAAAAGGATA+AGG 0.449527 3_2:-64057184 Msa0416960:CDS
TAAATCACTAAATTATAGAA+TGG 0.454360 3_2:-64055180 Msa0416960:CDS
CACAGCACTAGCTGATGCTC+GGG 0.455439 3_2:+64056637 None:intergenic
GGAAATCTCCTTGGCATGGA+AGG 0.458503 3_2:-64057064 Msa0416960:CDS
GGCAATGGAACTCTTGGAAC+TGG 0.464325 3_2:-64056590 Msa0416960:CDS
TCTGTAGATAAACATGTTCC+TGG 0.468353 3_2:-64054202 Msa0416960:intron
GACACCTTGAATACTTCAAA+CGG 0.469906 3_2:+64053599 None:intergenic
CTGACGCAGGACAACTATAC+AGG 0.473699 3_2:+64053874 None:intergenic
TGTCTTTGGTATCTTAAGCT+TGG 0.473995 3_2:-64053186 Msa0416960:three_prime_UTR
AATCCAGAAGGAGAAACCTT+TGG 0.476956 3_2:-64053976 Msa0416960:CDS
ACCCGCAGTTGATAAACTTA+AGG 0.477325 3_2:-64055910 Msa0416960:CDS
CTCGTTCTCCAACAAAGAAA+AGG 0.480627 3_2:-64057190 Msa0416960:CDS
AACATCTCTCCACCGTGTCC+AGG 0.481498 3_2:-64057874 Msa0416960:intron
TTCCGTCTTGGTTAAATGGA+TGG 0.483104 3_2:-64057085 Msa0416960:CDS
ATAACAGGAAGCATCCTTGT+TGG 0.485453 3_2:-64055656 Msa0416960:intron
AAAGCTTACCGGCATTGGAA+TGG 0.488189 3_2:+64053803 None:intergenic
TTGGAATCAGGATTAGAGAA+AGG 0.488890 3_2:-64056992 Msa0416960:CDS
TAGTGCTGTGGCATTTGGAA+TGG 0.489961 3_2:-64056624 Msa0416960:CDS
GGCTTTGGAGGTAGCTCCAA+AGG 0.490471 3_2:+64053960 None:intergenic
AGTGCTGTGGCATTTGGAAT+GGG 0.491271 3_2:-64056623 Msa0416960:CDS
CTTTGGAGAGAGTTCCGTCT+TGG 0.491832 3_2:-64057097 Msa0416960:CDS
AAAGAAAAGGATAAGGGAGT+TGG 0.492650 3_2:-64057177 Msa0416960:CDS
TCCACAGAAAAGAAAATGGC+GGG 0.494438 3_2:-64053937 Msa0416960:CDS
TCCTTAAGTTTATCAACTGC+GGG 0.494728 3_2:+64055909 None:intergenic
TTGAGAAATGTAAAATTGAA+AGG 0.497137 3_2:+64057927 None:intergenic
AGATTACATCTGCATTAGTT+GGG 0.499233 3_2:-64055872 Msa0416960:CDS
GCCTTTATAGGATATATGTC+TGG 0.504217 3_2:+64056939 None:intergenic
AACCAAGCAGACATGAGAAT+GGG 0.505960 3_2:+64054131 None:intergenic
TGAAGATGTTGTTCAATCCA+TGG 0.509427 3_2:-64055144 Msa0416960:CDS
AGCATGTTGTTACCAGCAAA+AGG 0.511702 3_2:+64053900 None:intergenic
ATACCAAAGACATTCTTGTC+TGG 0.512453 3_2:+64053197 None:intergenic
GGCAGATTACATCATCTCTC+TGG 0.512633 3_2:-64055827 Msa0416960:CDS
CTTGGAGGCGTTTATTCTGA+AGG 0.514437 3_2:-64055210 Msa0416960:CDS
GATGTAATCTCATCCAAGAT+AGG 0.518769 3_2:+64055885 None:intergenic
TATTCACTACAGGGTTGTCA+TGG 0.519764 3_2:-64053635 Msa0416960:intron
AAACCAAGCAGACATGAGAA+TGG 0.520129 3_2:+64054130 None:intergenic
ATCATTCAACACACAAAAGT+AGG 0.521207 3_2:+64052907 None:intergenic
TAGTTTCTGCATGAGCAAAC+CGG 0.522173 3_2:+64054158 None:intergenic
GGGTTGTCACCTTTCGCTAG+TGG 0.522205 3_2:+64053363 None:intergenic
CCACAGCACTAGCTGATGCT+CGG 0.526889 3_2:+64056636 None:intergenic
TTCCTTAAGTTTATCAACTG+CGG 0.537280 3_2:+64055908 None:intergenic
GGTTGTCACCTTTCGCTAGT+GGG 0.540533 3_2:+64053364 None:intergenic
CAAGCTATTAAAGCTGAAGA+AGG 0.543650 3_2:-64055119 Msa0416960:intron
ATCATACTCCGTGAGGACTT+CGG 0.546753 3_2:+64053411 None:intergenic
TTCCATCCATTTAACCAAGA+CGG 0.547637 3_2:+64057083 None:intergenic
TGAACACCCCATTCCAATGC+CGG 0.550627 3_2:-64053811 Msa0416960:intron
TGAACAACATCTTCAAGTAA+TGG 0.551000 3_2:+64055152 None:intergenic
TAATGCCTGAATTTGTTAAG+TGG 0.551029 3_2:+64053267 None:intergenic
AGCTTTAATAGCTTGCTCCA+TGG 0.551216 3_2:+64055127 None:intergenic
TCCAACAAAGAAAAGGATAA+GGG 0.553218 3_2:-64057183 Msa0416960:CDS
ACAATAAGTCAGAAGATCGC+TGG 0.553673 3_2:+64052936 None:intergenic
TTGGAGGCGTTTATTCTGAA+GGG 0.560325 3_2:-64055209 Msa0416960:CDS
TGAGTTAATTAGACTAGGAG+AGG 0.561048 3_2:-64057030 Msa0416960:CDS
TAAATGGATGGAAATCTCCT+TGG 0.561808 3_2:-64057073 Msa0416960:CDS
ATTCCTTCTAAAATTCCTGA+AGG 0.565594 3_2:-64057718 Msa0416960:CDS
CATAGATTACATTGCTGGAG+TGG 0.565831 3_2:-64055241 Msa0416960:intron
ATATCCTATAAAGGCAACTC+AGG 0.566710 3_2:-64056931 Msa0416960:intron
CCCTTAAGCCTTCCATGCCA+AGG 0.571283 3_2:+64057056 None:intergenic
GGATGGAAATCTCCTTGGCA+TGG 0.574233 3_2:-64057068 Msa0416960:CDS
TTACATTCCCAGGCAAGGCA+TGG 0.576004 3_2:-64057215 Msa0416960:intron
GCTGGAGTGGACAGATGACT+TGG 0.580590 3_2:-64055228 Msa0416960:CDS
TGATTGTTGTCATAACTACA+AGG 0.582799 3_2:-64056504 Msa0416960:intron
AGCAAGAGCCGAAGTCCTCA+CGG 0.589533 3_2:-64053419 Msa0416960:CDS
GTTTCCGAGTTTGTTTGATG+AGG 0.592314 3_2:-64056970 Msa0416960:CDS
CAAACTAAAATTCATCTTTG+GGG 0.598005 3_2:+64053343 None:intergenic
TTTGTTAAGTGGTATCGCCA+AGG 0.602245 3_2:+64053278 None:intergenic
TGATATTCCAAATATTTCAG+TGG 0.604907 3_2:-64053392 Msa0416960:CDS
TTATAGGATATATGTCTGGA+TGG 0.605414 3_2:+64056943 None:intergenic
GACTACAAAAGTACCTCCGA+TGG 0.608670 3_2:+64055601 None:intergenic
CTCCACAGAAAAGAAAATGG+CGG 0.614630 3_2:-64053938 Msa0416960:CDS
ATATCAACATACATCATCTG+TGG 0.614696 3_2:+64053036 None:intergenic
AATCACTAAATTATAGAATG+GGG 0.619098 3_2:-64055178 Msa0416960:CDS
AGCTTACCGGCATTGGAATG+GGG 0.620507 3_2:+64053805 None:intergenic
GGAGTGGACAGATGACTTGG+AGG 0.620597 3_2:-64055225 Msa0416960:CDS
AGAGTTTGACAAAATCCAGA+AGG 0.633058 3_2:-64053988 Msa0416960:CDS
CCGAGCATCAGCTAGTGCTG+TGG 0.634420 3_2:-64056636 Msa0416960:CDS
TAGTCCTCATCAAACAAACT+CGG 0.636591 3_2:+64056966 None:intergenic
ATACAAACAACAGACGATGA+CGG 0.641311 3_2:+64053155 None:intergenic
TCAGCATGATGTCACTAGCA+CGG 0.641327 3_2:+64056534 None:intergenic
ACTACAAAAGTACCTCCGAT+GGG 0.652789 3_2:+64055602 None:intergenic
CCACAGAAAAGAAAATGGCG+GGG 0.653168 3_2:-64053936 Msa0416960:CDS
TCAATTGGAAGATCTTGTAA+GGG 0.653285 3_2:-64057141 Msa0416960:CDS
GTTACCAGCAAAAGGAGCCA+CGG 0.657381 3_2:+64053908 None:intergenic
ACAGCACTAGCTGATGCTCG+GGG 0.659608 3_2:+64056638 None:intergenic
AAAATGGCGGGGCAGCACCG+TGG 0.668105 3_2:-64053925 Msa0416960:CDS
TCATAGTCATGCTTCCGATG+AGG 0.671044 3_2:+64053459 None:intergenic
TTGTAAGGGATGCGAAAGAG+CGG 0.675487 3_2:-64057127 Msa0416960:CDS
GGCGGTGAGTTAATTAGACT+AGG 0.684077 3_2:-64057035 Msa0416960:CDS
TTGGAATATCATACTCCGTG+AGG 0.705221 3_2:+64053404 None:intergenic
GGAGAGAAACCTGGACACGG+TGG 0.707163 3_2:+64057865 None:intergenic
TTGATCAGTTATATCCAACA+AGG 0.711218 3_2:+64055642 None:intergenic
TAGGGAGAGAAACCTGGACA+CGG 0.718165 3_2:+64057862 None:intergenic
TGGCATGGAAGGCTTAAGGG+CGG 0.726071 3_2:-64057053 Msa0416960:CDS
GGTTCGCTGCTAGAAGAATG+TGG 0.735067 3_2:+64053241 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATATATCCATAAAAAA+AGG + chr3_2:64054960-64054979 None:intergenic 10.0%
!! TATTTAAATAATATTTACAG+AGG + chr3_2:64055388-64055407 None:intergenic 10.0%
!!! TATTTTATTTATATTCCTTT+TGG - chr3_2:64056420-64056439 Msa0416960:intron 10.0%
!!! AATTTTATCAATTTCTATTT+TGG - chr3_2:64056868-64056887 Msa0416960:intron 10.0%
!! TTATGGATATATAATTTCTT+TGG - chr3_2:64054964-64054983 Msa0416960:intron 15.0%
!! AATAAAATTTAAAAGATGTC+AGG - chr3_2:64055404-64055423 Msa0416960:intron 15.0%
!! AACAATAATTTATATGCATT+TGG + chr3_2:64055541-64055560 None:intergenic 15.0%
!! TAAATCACTAAATTATAGAA+TGG - chr3_2:64055749-64055768 Msa0416960:intron 15.0%
!! AAATCACTAAATTATAGAAT+GGG - chr3_2:64055750-64055769 Msa0416960:intron 15.0%
!!! TTTAGCATTTTTTAATATTG+AGG - chr3_2:64055836-64055855 Msa0416960:CDS 15.0%
!!! AACTATGCATTTTTTAATAA+CGG - chr3_2:64056463-64056482 Msa0416960:intron 15.0%
!! TTGAGAAATGTAAAATTGAA+AGG + chr3_2:64053005-64053024 None:intergenic 20.0%
!!! AAATTGATAATCTAGAATGT+TGG + chr3_2:64053102-64053121 None:intergenic 20.0%
!! AGAAAATTAACAAACACAAT+TGG + chr3_2:64053148-64053167 None:intergenic 20.0%
!!! TGTTTGTTAATTTTCTTTGA+AGG - chr3_2:64053152-64053171 Msa0416960:intron 20.0%
!!! TTGTTTGTTTGTTTTAGAAA+CGG + chr3_2:64053624-64053643 None:intergenic 20.0%
!!! ATGAAATTGACTTGATATTT+TGG - chr3_2:64054233-64054252 Msa0416960:intron 20.0%
!! GACACTAAAATTTATGAAAT+TGG + chr3_2:64054546-64054565 None:intergenic 20.0%
!!! GTGATTTTTAGTATTCTTAT+AGG - chr3_2:64054910-64054929 Msa0416960:intron 20.0%
!! AATCACTAAATTATAGAATG+GGG - chr3_2:64055751-64055770 Msa0416960:intron 20.0%
!! GAAGAAGATTAAAATCAATA+TGG + chr3_2:64056355-64056374 None:intergenic 20.0%
!! AATTCCAGTTAGTATATAAT+TGG - chr3_2:64056549-64056568 Msa0416960:CDS 20.0%
!!! TTCTCATTGTTTTGATTTAA+TGG - chr3_2:64056573-64056592 Msa0416960:CDS 20.0%
!! ACAAACTAAAATTCATCTTT+GGG + chr3_2:64057590-64057609 None:intergenic 20.0%
!! AACAAACTAAAATTCATCTT+TGG + chr3_2:64057591-64057610 None:intergenic 20.0%
!!! TTTTAGTTTGTTCTATTGAA+AGG - chr3_2:64057599-64057618 Msa0416960:intron 20.0%
!! ACTATTCCAAAAGATAAAAA+CGG + chr3_2:64057963-64057982 None:intergenic 20.0%
!!! GTTAATTTTCTTTGAAGGTA+CGG - chr3_2:64053157-64053176 Msa0416960:intron 25.0%
! TCCAATTCATTTAAATCTTG+TGG - chr3_2:64053240-64053259 Msa0416960:three_prime_UTR 25.0%
! ACCACAAGATTTAAATGAAT+TGG + chr3_2:64053244-64053263 None:intergenic 25.0%
!! GTCACTTTCCTAAATTATTA+CGG - chr3_2:64053396-64053415 Msa0416960:CDS 25.0%
! TCACTTTCCTAAATTATTAC+GGG - chr3_2:64053397-64053416 Msa0416960:CDS 25.0%
!! TTTTATATTGTTATGCTGCT+TGG - chr3_2:64053516-64053535 Msa0416960:intron 25.0%
!! TTTTCTAGATTATCCAACTT+TGG - chr3_2:64053576-64053595 Msa0416960:intron 25.0%
! TTAATAACACTAACCAAAGT+TGG + chr3_2:64053592-64053611 None:intergenic 25.0%
! AACAAACAAACAAAAACTAG+TGG - chr3_2:64053635-64053654 Msa0416960:intron 25.0%
! AATGATCATACTATTCCATT+TGG + chr3_2:64053682-64053701 None:intergenic 25.0%
!!! TATCTTCATTTTTTCCTTCT+AGG - chr3_2:64054027-64054046 Msa0416960:intron 25.0%
! GATTTGATCTATTGAATATC+TGG - chr3_2:64054052-64054071 Msa0416960:intron 25.0%
!!! AATTGACTTGATATTTTGGA+TGG - chr3_2:64054237-64054256 Msa0416960:intron 25.0%
!! ATAAGAAGCATATTTGCAAA+TGG + chr3_2:64054568-64054587 None:intergenic 25.0%
! GGAAAAAAATTATCATCGAA+AGG + chr3_2:64054685-64054704 None:intergenic 25.0%
! TTACATTAGAGTGACAAATA+TGG + chr3_2:64054790-64054809 None:intergenic 25.0%
! ATTATGAAGTGTGTTTAAAG+AGG - chr3_2:64054828-64054847 Msa0416960:intron 25.0%
!!! TATTTCTGGACCTTTTTTTA+TGG - chr3_2:64054947-64054966 Msa0416960:intron 25.0%
! TGTTATAAACCATCACAAAT+TGG + chr3_2:64055259-64055278 None:intergenic 25.0%
! AATTTGTGATGGTTTATAAC+AGG - chr3_2:64055258-64055277 Msa0416960:intron 25.0%
! AAAGAAACTGAAGTAGTAAA+AGG - chr3_2:64055497-64055516 Msa0416960:intron 25.0%
! AAGAAACTGAAGTAGTAAAA+GGG - chr3_2:64055498-64055517 Msa0416960:intron 25.0%
! TATATACATATTTGCTCTTC+AGG - chr3_2:64055888-64055907 Msa0416960:CDS 25.0%
! TTTCCTGCTTTATAAGAAAA+TGG - chr3_2:64056328-64056347 Msa0416960:intron 25.0%
! TGCATAGTTCAAGAAAATAT+AGG + chr3_2:64056452-64056471 None:intergenic 25.0%
! AAAAAATGGAAATGAGTCAT+AGG + chr3_2:64056700-64056719 None:intergenic 25.0%
! CTACAGAAGCAATAAAAAAA+TGG + chr3_2:64056714-64056733 None:intergenic 25.0%
! TTATTGTGAATAGCTGAATT+TGG - chr3_2:64057194-64057213 Msa0416960:CDS 25.0%
! GATCAATTTGCAAGATTAAT+CGG - chr3_2:64057381-64057400 Msa0416960:intron 25.0%
! ATCAATTTGCAAGATTAATC+GGG - chr3_2:64057382-64057401 Msa0416960:intron 25.0%
! TGATATTCCAAATATTTCAG+TGG - chr3_2:64057537-64057556 Msa0416960:intron 25.0%
! CAAACTAAAATTCATCTTTG+GGG + chr3_2:64057589-64057608 None:intergenic 25.0%
!! TATTTATAACACCTGAGTTT+TGG - chr3_2:64057794-64057813 Msa0416960:intron 25.0%
! ACACTGTTAAGGAAAAAAAA+GGG + chr3_2:64057851-64057870 None:intergenic 25.0%
! AACACTGTTAAGGAAAAAAA+AGG + chr3_2:64057852-64057871 None:intergenic 25.0%
! TATCAAGATTAACACTGTTA+AGG + chr3_2:64057862-64057881 None:intergenic 25.0%
! CTATTCCAAAAGATAAAAAC+GGG + chr3_2:64057962-64057981 None:intergenic 25.0%
ATTAACAGAACAAGAGTGAT+TGG + chr3_2:64052976-64052995 None:intergenic 30.0%
GAATGTTGGAAAACATGTTA+GGG + chr3_2:64053088-64053107 None:intergenic 30.0%
AGAATGTTGGAAAACATGTT+AGG + chr3_2:64053089-64053108 None:intergenic 30.0%
!! ATTCCTTCTAAAATTCCTGA+AGG - chr3_2:64053211-64053230 Msa0416960:three_prime_UTR 30.0%
ACTAATATAGACATGGACAT+TGG + chr3_2:64053450-64053469 None:intergenic 30.0%
! ATGAAGCACTAATATAGACA+TGG + chr3_2:64053457-64053476 None:intergenic 30.0%
ATTTATGACTGTTGAAACGA+TGG - chr3_2:64053546-64053565 Msa0416960:intron 30.0%
TTTATGACTGTTGAAACGAT+GGG - chr3_2:64053547-64053566 Msa0416960:intron 30.0%
CTAATCACTTCTATACCAAA+TGG - chr3_2:64053664-64053683 Msa0416960:intron 30.0%
TGGAATAGTATGATCATTGA+TGG - chr3_2:64053684-64053703 Msa0416960:intron 30.0%
TCCAACAAAGAAAAGGATAA+GGG - chr3_2:64053746-64053765 Msa0416960:intron 30.0%
TCAATTGGAAGATCTTGTAA+GGG - chr3_2:64053788-64053807 Msa0416960:intron 30.0%
AATTGTTTGAACTTGGAATC+AGG - chr3_2:64053925-64053944 Msa0416960:CDS 30.0%
TTATAGGATATATGTCTGGA+TGG + chr3_2:64053989-64054008 None:intergenic 30.0%
TCCAGACATATATCCTATAA+AGG - chr3_2:64053989-64054008 Msa0416960:CDS 30.0%
ATAGATCAAATCTACCTAGA+AGG + chr3_2:64054044-64054063 None:intergenic 30.0%
! TCAATTGTCACTAGTAGTTT+TGG - chr3_2:64054090-64054109 Msa0416960:intron 30.0%
TGATTGTTGTCATAACTACA+AGG - chr3_2:64054425-64054444 Msa0416960:intron 30.0%
!!! GTAGACATTGTTGGTTTTTA+AGG - chr3_2:64054455-64054474 Msa0416960:intron 30.0%
ATTATCATCGAAAGGAACAT+AGG + chr3_2:64054677-64054696 None:intergenic 30.0%
!!! TTTTTTCCCATTTTGCTAGA+AGG - chr3_2:64054697-64054716 Msa0416960:intron 30.0%
TTTGTCACTCTAATGTAAAG+AGG - chr3_2:64054792-64054811 Msa0416960:intron 30.0%
ACTTCATAATCAACCTATGA+AGG + chr3_2:64054818-64054837 None:intergenic 30.0%
!! TTAGCTCTATTGATGTACAT+TGG - chr3_2:64054880-64054899 Msa0416960:intron 30.0%
! TAGCTCTATTGATGTACATT+GGG - chr3_2:64054881-64054900 Msa0416960:intron 30.0%
TAGTGTCTGTAGTTTATTTC+TGG - chr3_2:64054933-64054952 Msa0416960:intron 30.0%
TTCCTTAAGTTTATCAACTG+CGG + chr3_2:64055024-64055043 None:intergenic 30.0%
TAAACTTAAGGAACCTATCT+TGG - chr3_2:64055031-64055050 Msa0416960:intron 30.0%
AGATTACATCTGCATTAGTT+GGG - chr3_2:64055057-64055076 Msa0416960:intron 30.0%
TGTGAACTTAAAAGAACACA+GGG + chr3_2:64055181-64055200 None:intergenic 30.0%
ATAATCATTTACTAGTGCAG+TGG - chr3_2:64055202-64055221 Msa0416960:CDS 30.0%
TTGATCAGTTATATCCAACA+AGG + chr3_2:64055290-64055309 None:intergenic 30.0%
TGATGTGATATGTGATCAAA+TGG - chr3_2:64055352-64055371 Msa0416960:intron 30.0%
TGCAGTTAGTTATCATATCA+AGG + chr3_2:64055478-64055497 None:intergenic 30.0%
TGAACAACATCTTCAAGTAA+TGG + chr3_2:64055780-64055799 None:intergenic 30.0%
GAACAAGACGACTTTAATAT+AGG + chr3_2:64055920-64055939 None:intergenic 30.0%
TTACTAACTACTCACTTTAG+AGG + chr3_2:64055970-64055989 None:intergenic 30.0%
! AAATATAGGCTTTAGCCAAA+AGG + chr3_2:64056438-64056457 None:intergenic 30.0%
GAAGCCAATTATATACTAAC+TGG + chr3_2:64056556-64056575 None:intergenic 30.0%
ACAACCTTTGTCAATGTTTA+TGG - chr3_2:64056615-64056634 Msa0416960:CDS 30.0%
CAACCTTTGTCAATGTTTAT+GGG - chr3_2:64056616-64056635 Msa0416960:CDS 30.0%
!!! TTGGTTTTATTGCAAAGTAG+TGG - chr3_2:64056887-64056906 Msa0416960:intron 30.0%
!!! TGGTTTTATTGCAAAGTAGT+GGG - chr3_2:64056888-64056907 Msa0416960:intron 30.0%
GCTATTCACAATAAAACCAT+TGG + chr3_2:64057188-64057207 None:intergenic 30.0%
!!! TTCGTTTTGTTATTCACTAC+AGG - chr3_2:64057284-64057303 Msa0416960:intron 30.0%
!!! TCGTTTTGTTATTCACTACA+GGG - chr3_2:64057285-64057304 Msa0416960:intron 30.0%
AAAAAATAGTTGCACCTCAT+CGG - chr3_2:64057456-64057475 Msa0416960:intron 30.0%
! ATTCTCACTTTCTTTTTCCT+TGG - chr3_2:64057634-64057653 Msa0416960:intron 30.0%
!! TAATGCCTGAATTTGTTAAG+TGG + chr3_2:64057665-64057684 None:intergenic 30.0%
CAGTGAAATCGATGTAAAAT+TGG + chr3_2:64057712-64057731 None:intergenic 30.0%
ATATCAACATACATCATCTG+TGG + chr3_2:64057896-64057915 None:intergenic 30.0%
! TATTTCATGTTTTGCACATC+TGG - chr3_2:64057913-64057932 Msa0416960:CDS 30.0%
ATCATTCAACACACAAAAGT+AGG + chr3_2:64058025-64058044 None:intergenic 30.0%
CTGAAACGTGTTAGAGAAAA+TGG - chr3_2:64052945-64052964 Msa0416960:three_prime_UTR 35.0%
! CATCCTTCAGGAATTTTAGA+AGG + chr3_2:64053217-64053236 None:intergenic 35.0%
TCTGACACCCGTAATAATTT+AGG + chr3_2:64053407-64053426 None:intergenic 35.0%
CTCCAACAAAGAAAAGGATA+AGG - chr3_2:64053745-64053764 Msa0416960:intron 35.0%
! TCCCTTATCCTTTTCTTTGT+TGG + chr3_2:64053750-64053769 None:intergenic 35.0%
AAAGAAAAGGATAAGGGAGT+TGG - chr3_2:64053752-64053771 Msa0416960:intron 35.0%
GATAAGGGAGTTGGATAATT+TGG - chr3_2:64053761-64053780 Msa0416960:intron 35.0%
CTCAATTGGAAGATCTTGTA+AGG - chr3_2:64053787-64053806 Msa0416960:intron 35.0%
TTCCATCCATTTAACCAAGA+CGG + chr3_2:64053849-64053868 None:intergenic 35.0%
TAAATGGATGGAAATCTCCT+TGG - chr3_2:64053856-64053875 Msa0416960:CDS 35.0%
TGAGTTAATTAGACTAGGAG+AGG - chr3_2:64053899-64053918 Msa0416960:CDS 35.0%
GAGGAAGAATTGTTTGAACT+TGG - chr3_2:64053918-64053937 Msa0416960:CDS 35.0%
TTGGAATCAGGATTAGAGAA+AGG - chr3_2:64053937-64053956 Msa0416960:CDS 35.0%
TAGTCCTCATCAAACAAACT+CGG + chr3_2:64053966-64053985 None:intergenic 35.0%
GCCTTTATAGGATATATGTC+TGG + chr3_2:64053993-64054012 None:intergenic 35.0%
ATATCCTATAAAGGCAACTC+AGG - chr3_2:64053998-64054017 Msa0416960:intron 35.0%
!!! CTAGTAGTTTTGGAAGAATC+AGG - chr3_2:64054100-64054119 Msa0416960:intron 35.0%
TTGGAAGAATCAGGAAACAT+TGG - chr3_2:64054109-64054128 Msa0416960:intron 35.0%
GTGGCACTTCAATTTAATCA+TGG + chr3_2:64054199-64054218 None:intergenic 35.0%
GGTAATGTTGTAGACATTGT+TGG - chr3_2:64054446-64054465 Msa0416960:intron 35.0%
!!! ACATTGTTGGTTTTTAAGGC+AGG - chr3_2:64054459-64054478 Msa0416960:intron 35.0%
! AAAGCACCTTCTAGCAAAAT+GGG + chr3_2:64054706-64054725 None:intergenic 35.0%
TATGTTAATCTCCATCGCAA+CGG + chr3_2:64054753-64054772 None:intergenic 35.0%
TAATGTAAAGAGGCCTTCAT+AGG - chr3_2:64054802-64054821 Msa0416960:intron 35.0%
TCCTTAAGTTTATCAACTGC+GGG + chr3_2:64055023-64055042 None:intergenic 35.0%
GATGTAATCTCATCCAAGAT+AGG + chr3_2:64055047-64055066 None:intergenic 35.0%
GAGATTACATCTGCATTAGT+TGG - chr3_2:64055056-64055075 Msa0416960:intron 35.0%
!! GATATGGGCTGAATTTTACA+AGG - chr3_2:64055081-64055100 Msa0416960:intron 35.0%
!! TCTCTGGTTCTTATGTAAAC+AGG - chr3_2:64055118-64055137 Msa0416960:intron 35.0%
GTTCTTATGTAAACAGGTGA+TGG - chr3_2:64055124-64055143 Msa0416960:CDS 35.0%
AGAACACAGGGAAAATCAAA+AGG + chr3_2:64055169-64055188 None:intergenic 35.0%
GTGTGAACTTAAAAGAACAC+AGG + chr3_2:64055182-64055201 None:intergenic 35.0%
TAGCTCTCACACATATAATC+AGG - chr3_2:64055586-64055605 Msa0416960:intron 35.0%
GTGTACATAGATTACATTGC+TGG - chr3_2:64055683-64055702 Msa0416960:intron 35.0%
TGAAGATGTTGTTCAATCCA+TGG - chr3_2:64055785-64055804 Msa0416960:intron 35.0%
CAAGCTATTAAAGCTGAAGA+AGG - chr3_2:64055810-64055829 Msa0416960:intron 35.0%
CATGCATAACAACTCATTAG+TGG + chr3_2:64056022-64056041 None:intergenic 35.0%
AAGTGAATTGCTCACTTTAG+AGG - chr3_2:64056104-64056123 Msa0416960:intron 35.0%
CAGTTTGATCAAACTAGCAA+AGG + chr3_2:64056208-64056227 None:intergenic 35.0%
! GGTCCATTTTCTTATAAAGC+AGG + chr3_2:64056334-64056353 None:intergenic 35.0%
TGTTGTGTTATGCTAACTGT+TGG - chr3_2:64056391-64056410 Msa0416960:intron 35.0%
CAACCCATAAACATTGACAA+AGG + chr3_2:64056622-64056641 None:intergenic 35.0%
TCTGTAGATAAACATGTTCC+TGG - chr3_2:64056727-64056746 Msa0416960:intron 35.0%
! GGTTTATTTCTTGAAGAGTC+TGG - chr3_2:64056817-64056836 Msa0416960:intron 35.0%
AGAGTTTGACAAAATCCAGA+AGG - chr3_2:64056941-64056960 Msa0416960:CDS 35.0%
!! TGCTGTCAGTTATTTTCCAA+TGG - chr3_2:64057169-64057188 Msa0416960:CDS 35.0%
TGTGAATAGCTGAATTTGGT+TGG - chr3_2:64057198-64057217 Msa0416960:CDS 35.0%
GACACCTTGAATACTTCAAA+CGG + chr3_2:64057333-64057352 None:intergenic 35.0%
! GATCATTTTGTGCAAAAGAG+TGG + chr3_2:64057365-64057384 None:intergenic 35.0%
! TTTCTGTGATTTTTCTCCAC+AGG - chr3_2:64057433-64057452 Msa0416960:intron 35.0%
GGAAAAGCCACTGAAATATT+TGG + chr3_2:64057547-64057566 None:intergenic 35.0%
CGATACCACTTAACAAATTC+AGG - chr3_2:64057657-64057676 Msa0416960:intron 35.0%
ATACCAAAGACATTCTTGTC+TGG + chr3_2:64057735-64057754 None:intergenic 35.0%
TGTCTTTGGTATCTTAAGCT+TGG - chr3_2:64057743-64057762 Msa0416960:CDS 35.0%
ATACAAACAACAGACGATGA+CGG + chr3_2:64057777-64057796 None:intergenic 35.0%
!!! TAACACCTGAGTTTTGGATA+TGG - chr3_2:64057800-64057819 Msa0416960:intron 35.0%
ACTTTCCATATCCAAAACTC+AGG + chr3_2:64057808-64057827 None:intergenic 35.0%
!! GAACTCCCGTTTTTATCTTT+TGG - chr3_2:64057954-64057973 Msa0416960:CDS 35.0%
TGAATTGGAGTACATCCTTC+AGG + chr3_2:64053229-64053248 None:intergenic 40.0%
CTCGTTCTCCAACAAAGAAA+AGG - chr3_2:64053739-64053758 Msa0416960:intron 40.0%
GGATAATTTGGCAGCTCAAT+TGG - chr3_2:64053773-64053792 Msa0416960:intron 40.0%
GAAAGAGCGGAAATTGTCTT+TGG - chr3_2:64053815-64053834 Msa0416960:CDS 40.0%
AGAGTTCCGTCTTGGTTAAA+TGG - chr3_2:64053840-64053859 Msa0416960:CDS 40.0%
TTCCGTCTTGGTTAAATGGA+TGG - chr3_2:64053844-64053863 Msa0416960:CDS 40.0%
! GTTTCCGAGTTTGTTTGATG+AGG - chr3_2:64053959-64053978 Msa0416960:CDS 40.0%
CTAGTGACAATTGACGTACA+TGG + chr3_2:64054084-64054103 None:intergenic 40.0%
!! ATCAGGAAACATTGGTTCTC+AGG - chr3_2:64054117-64054136 Msa0416960:CDS 40.0%
! AGAGCATATTTTACCCCCTT+TGG + chr3_2:64054144-64054163 None:intergenic 40.0%
TTCATGTCTCATTGTTGCAG+TGG + chr3_2:64054218-64054237 None:intergenic 40.0%
GGTTATGCATCTCTCTAATG+TGG - chr3_2:64054258-64054277 Msa0416960:intron 40.0%
ATCTCTCTAATGTGGCAAAC+AGG - chr3_2:64054266-64054285 Msa0416960:intron 40.0%
!! TTTGGAATGGGTCTTTTCAG+TGG - chr3_2:64054318-64054337 Msa0416960:intron 40.0%
!!! TTGTTGGTTTTTAAGGCAGG+AGG - chr3_2:64054462-64054481 Msa0416960:intron 40.0%
! CAACATTTTCCAGGCAGAAA+TGG + chr3_2:64054643-64054662 None:intergenic 40.0%
!! GAAAGCACCTTCTAGCAAAA+TGG + chr3_2:64054707-64054726 None:intergenic 40.0%
!!! TTTTGCTAGAAGGTGCTTTC+TGG - chr3_2:64054707-64054726 Msa0416960:intron 40.0%
ATTTCTTTGGTTACGAGAGC+AGG - chr3_2:64054977-64054996 Msa0416960:intron 40.0%
GCAGGATTTCAGGAAAAAGA+AGG - chr3_2:64054995-64055014 Msa0416960:intron 40.0%
!! ACCCGCAGTTGATAAACTTA+AGG - chr3_2:64055019-64055038 Msa0416960:intron 40.0%
AGGGAAAATCAAAAGGAGCT+GGG + chr3_2:64055162-64055181 None:intergenic 40.0%
TCCAACTGTCCAATTTGTGA+TGG - chr3_2:64055247-64055266 Msa0416960:intron 40.0%
ACCATCACAAATTGGACAGT+TGG + chr3_2:64055251-64055270 None:intergenic 40.0%
!! ATAACAGGAAGCATCCTTGT+TGG - chr3_2:64055273-64055292 Msa0416960:intron 40.0%
!! ACTACAAAAGTACCTCCGAT+GGG + chr3_2:64055330-64055349 None:intergenic 40.0%
CAGGATCTTTGTTGAGCTTA+TGG - chr3_2:64055605-64055624 Msa0416960:intron 40.0%
CATAGATTACATTGCTGGAG+TGG - chr3_2:64055688-64055707 Msa0416960:intron 40.0%
!! TTGGAGGCGTTTATTCTGAA+GGG - chr3_2:64055720-64055739 Msa0416960:intron 40.0%
! GCGTTTATTCTGAAGGGTTA+TGG - chr3_2:64055726-64055745 Msa0416960:intron 40.0%
!! AGCTTTAATAGCTTGCTCCA+TGG + chr3_2:64055805-64055824 None:intergenic 40.0%
AGGAGTCAAGTTCGTCTTTA+AGG + chr3_2:64055950-64055969 None:intergenic 40.0%
ACTGTCCCTTGAAATATGCA+CGG - chr3_2:64056132-64056151 Msa0416960:intron 40.0%
!! GCTTTGAAAAAGCAAGACTC+CGG - chr3_2:64056752-64056771 Msa0416960:intron 40.0%
TAGTTTCTGCATGAGCAAAC+CGG + chr3_2:64056774-64056793 None:intergenic 40.0%
AACCAAGCAGACATGAGAAT+GGG + chr3_2:64056801-64056820 None:intergenic 40.0%
AAACCAAGCAGACATGAGAA+TGG + chr3_2:64056802-64056821 None:intergenic 40.0%
ATTTCTTGAAGAGTCTGGTG+AGG - chr3_2:64056822-64056841 Msa0416960:intron 40.0%
AATCCAGAAGGAGAAACCTT+TGG - chr3_2:64056953-64056972 Msa0416960:CDS 40.0%
! TTTCTTTTCTGTGGAGGCTT+TGG + chr3_2:64056987-64057006 None:intergenic 40.0%
AGCCTCCACAGAAAAGAAAA+TGG - chr3_2:64056988-64057007 Msa0416960:CDS 40.0%
CTCCACAGAAAAGAAAATGG+CGG - chr3_2:64056991-64057010 Msa0416960:CDS 40.0%
TCCACAGAAAAGAAAATGGC+GGG - chr3_2:64056992-64057011 Msa0416960:CDS 40.0%
AGCATGTTGTTACCAGCAAA+AGG + chr3_2:64057032-64057051 None:intergenic 40.0%
CAAGAACTGCAAAAGCTTAC+CGG + chr3_2:64057140-64057159 None:intergenic 40.0%
TATTCACTACAGGGTTGTCA+TGG - chr3_2:64057294-64057313 Msa0416960:intron 40.0%
! CTGTCCGTTTGAAGTATTCA+AGG - chr3_2:64057326-64057345 Msa0416960:intron 40.0%
!!! GGTGCAACTATTTTTTCCTG+TGG + chr3_2:64057452-64057471 None:intergenic 40.0%
TTGGAATATCATACTCCGTG+AGG + chr3_2:64057528-64057547 None:intergenic 40.0%
TTTGTTAAGTGGTATCGCCA+AGG + chr3_2:64057654-64057673 None:intergenic 40.0%
ACAATAAGTCAGAAGATCGC+TGG + chr3_2:64057996-64058015 None:intergenic 40.0%
ACATGTTAGGGAGAGAAACC+TGG + chr3_2:64053076-64053095 None:intergenic 45.0%
!! TGGTGCTATGTTACATTCCC+AGG - chr3_2:64053704-64053723 Msa0416960:intron 45.0%
CTATGTTACATTCCCAGGCA+AGG - chr3_2:64053709-64053728 Msa0416960:intron 45.0%
TTGTAAGGGATGCGAAAGAG+CGG - chr3_2:64053802-64053821 Msa0416960:intron 45.0%
GGCGGTGAGTTAATTAGACT+AGG - chr3_2:64053894-64053913 Msa0416960:CDS 45.0%
CTCACCTGAGTTGCCTTTAT+AGG + chr3_2:64054005-64054024 None:intergenic 45.0%
!! ACATTGGTTCTCAGGTCCAA+AGG - chr3_2:64054125-64054144 Msa0416960:CDS 45.0%
!! CATTGGTTCTCAGGTCCAAA+GGG - chr3_2:64054126-64054145 Msa0416960:CDS 45.0%
! ATTGGTTCTCAGGTCCAAAG+GGG - chr3_2:64054127-64054146 Msa0416960:CDS 45.0%
TAGTGCTGTGGCATTTGGAA+TGG - chr3_2:64054305-64054324 Msa0416960:intron 45.0%
! AGTGCTGTGGCATTTGGAAT+GGG - chr3_2:64054306-64054325 Msa0416960:intron 45.0%
! ATGGGTCTTTTCAGTGGCAA+TGG - chr3_2:64054324-64054343 Msa0416960:intron 45.0%
TTCAGTGGCAATGGAACTCT+TGG - chr3_2:64054333-64054352 Msa0416960:intron 45.0%
TCAGCATGATGTCACTAGCA+CGG + chr3_2:64054398-64054417 None:intergenic 45.0%
TCGAAAGGAACATAGGCACA+CGG + chr3_2:64054670-64054689 None:intergenic 45.0%
TCTGCATTAGTTGGGCGATA+TGG - chr3_2:64055065-64055084 Msa0416960:intron 45.0%
CTGCATTAGTTGGGCGATAT+GGG - chr3_2:64055066-64055085 Msa0416960:intron 45.0%
GGCAGATTACATCATCTCTC+TGG - chr3_2:64055102-64055121 Msa0416960:intron 45.0%
CAGGGAAAATCAAAAGGAGC+TGG + chr3_2:64055163-64055182 None:intergenic 45.0%
! GTGTAGTCTTTTCAGCCCAT+CGG - chr3_2:64055312-64055331 Msa0416960:intron 45.0%
!! GACTACAAAAGTACCTCCGA+TGG + chr3_2:64055331-64055350 None:intergenic 45.0%
!! CTTGGAGGCGTTTATTCTGA+AGG - chr3_2:64055719-64055738 Msa0416960:intron 45.0%
CAGCACCGTGCATATTTCAA+GGG + chr3_2:64056140-64056159 None:intergenic 45.0%
TTCAAGATGCAGTCCCCAAA+AGG + chr3_2:64056661-64056680 None:intergenic 45.0%
!!! CTTGCTTTTTCAAAGCTGCC+AGG + chr3_2:64056748-64056767 None:intergenic 45.0%
!! CGCCATTTTCTTTTCTGTGG+AGG + chr3_2:64056993-64057012 None:intergenic 45.0%
CCACAGAAAAGAAAATGGCG+GGG - chr3_2:64056993-64057012 Msa0416960:CDS 45.0%
! AAGCTTACCGGCATTGGAAT+GGG + chr3_2:64057128-64057147 None:intergenic 45.0%
! AAAGCTTACCGGCATTGGAA+TGG + chr3_2:64057129-64057148 None:intergenic 45.0%
TCATAGTCATGCTTCCGATG+AGG + chr3_2:64057473-64057492 None:intergenic 45.0%
ATCATACTCCGTGAGGACTT+CGG + chr3_2:64057521-64057540 None:intergenic 45.0%
CTGCCAGACAAGAATGTCTT+TGG - chr3_2:64057729-64057748 Msa0416960:CDS 45.0%
TAGGGAGAGAAACCTGGACA+CGG + chr3_2:64053070-64053089 None:intergenic 50.0%
TTACATTCCCAGGCAAGGCA+TGG - chr3_2:64053714-64053733 Msa0416960:intron 50.0%
! CTTTGGAGAGAGTTCCGTCT+TGG - chr3_2:64053832-64053851 Msa0416960:CDS 50.0%
GGATGGAAATCTCCTTGGCA+TGG - chr3_2:64053861-64053880 Msa0416960:CDS 50.0%
GGAAATCTCCTTGGCATGGA+AGG - chr3_2:64053865-64053884 Msa0416960:CDS 50.0%
TCCTTGGCATGGAAGGCTTA+AGG - chr3_2:64053872-64053891 Msa0416960:CDS 50.0%
CCTTGGCATGGAAGGCTTAA+GGG - chr3_2:64053873-64053892 Msa0416960:CDS 50.0%
! TTGGTTCTCAGGTCCAAAGG+GGG - chr3_2:64054128-64054147 Msa0416960:CDS 50.0%
TCAGCTAGTGCTGTGGCATT+TGG - chr3_2:64054300-64054319 Msa0416960:intron 50.0%
GGCAATGGAACTCTTGGAAC+TGG - chr3_2:64054339-64054358 Msa0416960:intron 50.0%
! CACGGGCTTCAACATTTTCC+AGG + chr3_2:64054652-64054671 None:intergenic 50.0%
CGAAAGGAACATAGGCACAC+GGG + chr3_2:64054669-64054688 None:intergenic 50.0%
TGTCTGTCTTACCGTTGCGA+TGG - chr3_2:64054739-64054758 Msa0416960:intron 50.0%
GGTTACGAGAGCAGGATTTC+AGG - chr3_2:64054985-64055004 Msa0416960:intron 50.0%
! TAGTCTTTTCAGCCCATCGG+AGG - chr3_2:64055315-64055334 Msa0416960:intron 50.0%
CCAGCACCGTGCATATTTCA+AGG + chr3_2:64056141-64056160 None:intergenic 50.0%
CCTTGAAATATGCACGGTGC+TGG - chr3_2:64056138-64056157 Msa0416960:intron 50.0%
! AATCCCGCTCGTTCTCCTTT+TGG - chr3_2:64056643-64056662 Msa0416960:CDS 50.0%
! ATCCCGCTCGTTCTCCTTTT+GGG - chr3_2:64056644-64056663 Msa0416960:CDS 50.0%
GTCCCATTCTCATGTCTGCT+TGG - chr3_2:64056796-64056815 Msa0416960:intron 50.0%
GCTCCAAAGGTTTCTCCTTC+TGG + chr3_2:64056959-64056978 None:intergenic 50.0%
!! CTTTTCTGTGGAGGCTTTGG+AGG + chr3_2:64056984-64057003 None:intergenic 50.0%
!! CCCCGCCATTTTCTTTTCTG+TGG + chr3_2:64056996-64057015 None:intergenic 50.0%
GTTACCAGCAAAAGGAGCCA+CGG + chr3_2:64057024-64057043 None:intergenic 50.0%
CTGACGCAGGACAACTATAC+AGG + chr3_2:64057058-64057077 None:intergenic 50.0%
CTGTATAGTTGTCCTGCGTC+AGG - chr3_2:64057056-64057075 Msa0416960:CDS 50.0%
!!! CTTTTAGCTTTGCCTGACGC+AGG + chr3_2:64057071-64057090 None:intergenic 50.0%
TGAACACCCCATTCCAATGC+CGG - chr3_2:64057118-64057137 Msa0416960:CDS 50.0%
! AGCTTACCGGCATTGGAATG+GGG + chr3_2:64057127-64057146 None:intergenic 50.0%
CTGCAAAAGCTTACCGGCAT+TGG + chr3_2:64057134-64057153 None:intergenic 50.0%
! TGGCTTTTCCCACTAGCGAA+AGG - chr3_2:64057557-64057576 Msa0416960:intron 50.0%
GGTTGTCACCTTTCGCTAGT+GGG + chr3_2:64057568-64057587 None:intergenic 50.0%
GGTTCGCTGCTAGAAGAATG+TGG + chr3_2:64057691-64057710 None:intergenic 50.0%
AACATCTCTCCACCGTGTCC+AGG - chr3_2:64053055-64053074 Msa0416960:three_prime_UTR 55.0%
ACGAGTTCCATGCCTTGCCT+GGG + chr3_2:64053724-64053743 None:intergenic 55.0%
AACGAGTTCCATGCCTTGCC+TGG + chr3_2:64053725-64053744 None:intergenic 55.0%
CCCTTAAGCCTTCCATGCCA+AGG + chr3_2:64053876-64053895 None:intergenic 55.0%
TGGCATGGAAGGCTTAAGGG+CGG - chr3_2:64053876-64053895 Msa0416960:CDS 55.0%
ACAGCACTAGCTGATGCTCG+GGG + chr3_2:64054294-64054313 None:intergenic 55.0%
CACAGCACTAGCTGATGCTC+GGG + chr3_2:64054295-64054314 None:intergenic 55.0%
CCACAGCACTAGCTGATGCT+CGG + chr3_2:64054296-64054315 None:intergenic 55.0%
CACGTGCTACCATTTCTGCC+TGG - chr3_2:64054631-64054650 Msa0416960:intron 55.0%
GCTGGAGTGGACAGATGACT+TGG - chr3_2:64055701-64055720 Msa0416960:intron 55.0%
! GGAGTGGACAGATGACTTGG+AGG - chr3_2:64055704-64055723 Msa0416960:intron 55.0%
! TCCCGCTCGTTCTCCTTTTG+GGG - chr3_2:64056645-64056664 Msa0416960:intron 55.0%
TCCCCAAAAGGAGAACGAGC+GGG + chr3_2:64056649-64056668 None:intergenic 55.0%
GTCCCCAAAAGGAGAACGAG+CGG + chr3_2:64056650-64056669 None:intergenic 55.0%
!! GGCTTTGGAGGTAGCTCCAA+AGG + chr3_2:64056972-64056991 None:intergenic 55.0%
AGCAAGAGCCGAAGTCCTCA+CGG - chr3_2:64057510-64057529 Msa0416960:intron 55.0%
GGGTTGTCACCTTTCGCTAG+TGG + chr3_2:64057569-64057588 None:intergenic 55.0%
GGAGAGAAACCTGGACACGG+TGG + chr3_2:64053067-64053086 None:intergenic 60.0%
CCGAGCATCAGCTAGTGCTG+TGG - chr3_2:64054293-64054312 Msa0416960:intron 60.0%
! AGCACCGTGGCTCCTTTTGC+TGG - chr3_2:64057017-64057036 Msa0416960:CDS 60.0%
! AAAATGGCGGGGCAGCACCG+TGG - chr3_2:64057004-64057023 Msa0416960:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 64052897 64058054 64052897 ID=Msa0416960;Name=Msa0416960
chr3_2 mRNA 64052897 64058054 64052897 ID=Msa0416960-mRNA-1;Parent=Msa0416960;Name=Msa0416960-mRNA-1;_AED=0.16;_eAED=0.16;_QI=67|1|1|1|0.90|0.83|12|390|494
chr3_2 exon 64052897 64053109 64052897 ID=Msa0416960-mRNA-1:exon:14081;Parent=Msa0416960-mRNA-1
chr3_2 exon 64053170 64053496 64053170 ID=Msa0416960-mRNA-1:exon:14080;Parent=Msa0416960-mRNA-1
chr3_2 exon 64053604 64053645 64053604 ID=Msa0416960-mRNA-1:exon:14079;Parent=Msa0416960-mRNA-1
chr3_2 exon 64053812 64054008 64053812 ID=Msa0416960-mRNA-1:exon:14078;Parent=Msa0416960-mRNA-1
chr3_2 exon 64054113 64054217 64054113 ID=Msa0416960-mRNA-1:exon:14077;Parent=Msa0416960-mRNA-1
chr3_2 exon 64055120 64055258 64055120 ID=Msa0416960-mRNA-1:exon:14076;Parent=Msa0416960-mRNA-1
chr3_2 exon 64055615 64055671 64055615 ID=Msa0416960-mRNA-1:exon:14075;Parent=Msa0416960-mRNA-1
chr3_2 exon 64055812 64055952 64055812 ID=Msa0416960-mRNA-1:exon:14074;Parent=Msa0416960-mRNA-1
chr3_2 exon 64056505 64056663 64056505 ID=Msa0416960-mRNA-1:exon:14073;Parent=Msa0416960-mRNA-1
chr3_2 exon 64056932 64057225 64056932 ID=Msa0416960-mRNA-1:exon:14072;Parent=Msa0416960-mRNA-1
chr3_2 exon 64057690 64057777 64057690 ID=Msa0416960-mRNA-1:exon:14071;Parent=Msa0416960-mRNA-1
chr3_2 exon 64057875 64058054 64057875 ID=Msa0416960-mRNA-1:exon:14070;Parent=Msa0416960-mRNA-1
chr3_2 five_prime_UTR 64057988 64058054 64057988 ID=Msa0416960-mRNA-1:five_prime_utr;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64057875 64057987 64057875 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64057690 64057777 64057690 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64056932 64057225 64056932 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64056505 64056663 64056505 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64055812 64055952 64055812 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64055615 64055671 64055615 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64055120 64055258 64055120 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64054113 64054217 64054113 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64053812 64054008 64053812 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64053604 64053645 64053604 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 CDS 64053347 64053496 64053347 ID=Msa0416960-mRNA-1:cds;Parent=Msa0416960-mRNA-1
chr3_2 three_prime_UTR 64053170 64053346 64053170 ID=Msa0416960-mRNA-1:three_prime_utr;Parent=Msa0416960-mRNA-1
chr3_2 three_prime_UTR 64052897 64053109 64052897 ID=Msa0416960-mRNA-1:three_prime_utr;Parent=Msa0416960-mRNA-1
Gene Sequence

>Msa0416960

ATGGCGAAACCAATCACTCTTGTTCTGTTAATATTATTCCTTTCAATTTTACATTTCTCAAACGCTGCAGAAGAAGCTTTTGATGTTCGCAAACATCTCTCCACCGTGTCCAGGTACGGAGTTGTGAAAGACATTACTGACAAGAATTTCATTCCTTCTAAAATTCCTGAAGGATGTACTCCAATTCATTTAAATCTTGTGGCAAGGCATGGAACTCGTTCTCCAACAAAGAAAAGGATAAGGGAGTTGGATAATTTGGCAGCTCAATTGGAAGATCTTGTAAGGGATGCGAAAGAGCGGAAATTGTCTTTGGAGAGAGTTCCGTCTTGGTTAAATGGATGGAAATCTCCTTGGCATGGAAGGCTTAAGGGCGGTGAGTTAATTAGACTAGGAGAGGAAGAATTGTTTGAACTTGGAATCAGGATTAGAGAAAGGTTTCCGAGTTTGTTTGATGAGGACTACCATCCAGACATATATCCTATAAAGGCAACTCAGGTTCCCCGAGCATCAGCTAGTGCTGTGGCATTTGGAATGGGTCTTTTCAGTGGCAATGGAACTCTTGGAACTGGTAAACACAGAGCTTTTGCTGTTGCAAGTGAAAGCCGTGCTAGTGACATCATGCTGAGATTTCATGATTGTTGTCATAACTACAAGGATTTCAGGAAAAAGAAGGAACCCGCAGTTGATAAACTTAAGGAACCTATCTTGGATGAGATTACATCTGCATTAGTTGGGCGATATGGGCTGAATTTTACAAGGCAGATTACATCATCTCTCTGGTTCTTATGTAAACAGGAAGCATCCTTGTTGGATATAACTGATCAAGCGTGTAGTCTTTTCAGCCCATCGGAGATTACATTGCTGGAGTGGACAGATGACTTGGAGGCGTTTATTCTGAAGGGTTATGGTAAATCACTAAATTATAGAATGGGGATGCCATTACTTGAAGATGTTGTTCAATCCATGGAGCAAGCTATTAAAGCTGAAGAAGATAAACATGTTCCTGGCAGCTTTGAAAAAGCAAGACTCCGGTTTGCTCATGCAGAAACTATAGTCCCATTCTCATGTCTGCTTGGTTTATTTCTTGAAGAGTCTGAGTTTGACAAAATCCAGAAGGAGAAACCTTTGGAGCTACCTCCAAAGCCTCCACAGAAAAGAAAATGGCGGGGCAGCACCGTGGCTCCTTTTGCTGGTAACAACATGCTGCTCCTGTATAGTTGTCCTGCGTCAGGCAAAGCTAAAAGCAAGCACTTCGTGCAAGTGCTGCACAATGAACACCCCATTCCAATGCCGGGTTGTCATGGTTCTGATTTCTGTCCGTTTGAAGTATTCAAGGAAAAAATAGTTGCACCTCATCGGAAGCATGACTATGATACAGTTTGTAATGCAAAGCAAGAGCCGAAGTCCTCACGGAGTATGATATTCCAAATATTTCAGTGGCTTTTCCCACTAGCGAAAGGTGACAACCCCAAAGATGAATTTTAG

Protein sequence

>Msa0416960

MAKPITLVLLILFLSILHFSNAAEEAFDVRKHLSTVSRYGVVKDITDKNFIPSKIPEGCTPIHLNLVARHGTRSPTKKRIRELDNLAAQLEDLVRDAKERKLSLERVPSWLNGWKSPWHGRLKGGELIRLGEEELFELGIRIRERFPSLFDEDYHPDIYPIKATQVPRASASAVAFGMGLFSGNGTLGTGKHRAFAVASESRASDIMLRFHDCCHNYKDFRKKKEPAVDKLKEPILDEITSALVGRYGLNFTRQITSSLWFLCKQEASLLDITDQACSLFSPSEITLLEWTDDLEAFILKGYGKSLNYRMGMPLLEDVVQSMEQAIKAEEDKHVPGSFEKARLRFAHAETIVPFSCLLGLFLEESEFDKIQKEKPLELPPKPPQKRKWRGSTVAPFAGNNMLLLYSCPASGKAKSKHFVQVLHNEHPIPMPGCHGSDFCPFEVFKEKIVAPHRKHDYDTVCNAKQEPKSSRSMIFQIFQWLFPLAKGDNPKDEF*