AlfalfaGEDB | Msa1457850

M. sativa cultivar zhongmu-4 / Msa1457850

KEGG: -
GO: GO:0005575 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040007 GO:0044425 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457850	GAU50027.1	83.051	59	10	0	1	59	1	59	9.91e-25	96.7

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457850	A0A2Z6PTB5	83.051	59	10	0	1	59	1	59	4.73e-25	96.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004590	Msa1457850	0.808779	2.618504e-50	-8.615850e-47
Msa0009530	Msa1457850	-0.810162	1.321925e-50	-8.615850e-47
Msa0014590	Msa1457850	0.802222	6.213945e-49	-8.615850e-47
Msa0032390	Msa1457850	0.806340	8.627244e-50	-8.615850e-47
Msa0057860	Msa1457850	0.815874	7.391908e-52	-8.615850e-47
Msa0092220	Msa1457850	0.802313	5.953354e-49	-8.615850e-47
Msa0102920	Msa1457850	0.806059	9.885232e-50	-8.615850e-47
Msa1370970	Msa1457850	0.800732	1.255271e-48	-8.615850e-47
Msa1380740	Msa1457850	0.806536	7.845242e-50	-8.615850e-47
Msa1395050	Msa1457850	0.818905	1.535625e-52	-8.615850e-47
Msa1413020	Msa1457850	0.801858	7.382525e-49	-8.615850e-47
Msa1447900	Msa1457850	0.805272	1.445918e-49	-8.615850e-47
Msa0609460	Msa1457850	0.801468	8.876104e-49	-8.615850e-47
Msa0623310	Msa1457850	0.802985	4.326427e-49	-8.615850e-47
Msa0624930	Msa1457850	0.815990	6.963854e-52	-8.615850e-47
Msa0631700	Msa1457850	0.806179	9.328667e-50	-8.615850e-47
Msa0643190	Msa1457850	0.804979	1.665642e-49	-8.615850e-47
Msa0650100	Msa1457850	0.803390	3.566892e-49	-8.615850e-47
Msa0658120	Msa1457850	0.818978	1.478359e-52	-8.615850e-47
Msa0670360	Msa1457850	0.801587	8.392185e-49	-8.615850e-47
Msa0671400	Msa1457850	0.824302	8.689609e-54	-8.615850e-47
Msa0702970	Msa1457850	0.807133	5.866269e-50	-8.615850e-47
Msa0716700	Msa1457850	0.808420	3.124704e-50	-8.615850e-47
Msa0742200	Msa1457850	0.826948	2.050121e-54	-8.615850e-47
Msa0804170	Msa1457850	0.802638	5.101613e-49	-8.615850e-47
Msa0806930	Msa1457850	0.801421	9.077641e-49	-8.615850e-47
Msa0814160	Msa1457850	0.800703	1.272596e-48	-8.615850e-47
Msa0823380	Msa1457850	0.823117	1.646001e-53	-8.615850e-47
Msa0147680	Msa1457850	0.834699	2.577604e-56	-8.615850e-47
Msa0190890	Msa1457850	0.833435	5.342351e-56	-8.615850e-47
Msa0191100	Msa1457850	0.800210	1.604083e-48	-8.615850e-47
Msa0195580	Msa1457850	0.802639	5.100512e-49	-8.615850e-47
Msa0220090	Msa1457850	0.814693	1.352726e-51	-8.615850e-47
Msa0225070	Msa1457850	-0.800799	1.216539e-48	-8.615850e-47
Msa0226410	Msa1457850	0.804486	2.111378e-49	-8.615850e-47
Msa0233210	Msa1457850	0.817509	3.177990e-52	-8.615850e-47
Msa0238110	Msa1457850	0.815496	8.972850e-52	-8.615850e-47
Msa1225890	Msa1457850	0.846318	2.342012e-59	-8.615850e-47
Msa1281780	Msa1457850	0.811041	8.538508e-51	-8.615850e-47
Msa1323260	Msa1457850	-0.810095	1.366776e-50	-8.615850e-47
Msa1343590	Msa1457850	0.802868	4.573435e-49	-8.615850e-47
Msa0379480	Msa1457850	0.803799	2.933690e-49	-8.615850e-47
Msa0452770	Msa1457850	0.815725	7.978227e-52	-8.615850e-47
Msa0472390	Msa1457850	0.806070	9.833947e-50	-8.615850e-47
Msa1015560	Msa1457850	0.803239	3.832309e-49	-8.615850e-47
Msa1061760	Msa1457850	0.807585	4.703545e-50	-8.615850e-47
Msa1066150	Msa1457850	0.821883	3.186409e-53	-8.615850e-47
Msa1078590	Msa1457850	-0.800008	1.762500e-48	-8.615850e-47
Msa1098100	Msa1457850	0.805068	1.595970e-49	-8.615850e-47
Msa0248320	Msa1457850	0.800085	1.700373e-48	-8.615850e-47
Msa0261400	Msa1457850	0.802997	4.300829e-49	-8.615850e-47
Msa0267710	Msa1457850	0.814506	1.488180e-51	-8.615850e-47
Msa0311540	Msa1457850	0.811011	8.663841e-51	-8.615850e-47
Msa0349930	Msa1457850	0.808509	2.990166e-50	-8.615850e-47
Msa0358470	Msa1457850	0.810835	9.461129e-51	-8.615850e-47
Msa1107330	Msa1457850	0.832204	1.080269e-55	-8.615850e-47
Msa1130770	Msa1457850	0.803081	4.131720e-49	-8.615850e-47
Msa1138110	Msa1457850	0.813834	2.094646e-51	-8.615850e-47
Msa1150860	Msa1457850	0.809551	1.789594e-50	-8.615850e-47
Msa1186260	Msa1457850	0.812747	3.629452e-51	-8.615850e-47
Msa0515150	Msa1457850	0.800958	1.128811e-48	-8.615850e-47
Msa0529360	Msa1457850	0.813264	2.795258e-51	-8.615850e-47
Msa0535570	Msa1457850	0.802133	6.482006e-49	-8.615850e-47
Msa0565700	Msa1457850	0.800488	1.407907e-48	-8.615850e-47
Msa0566460	Msa1457850	0.826802	2.221723e-54	-8.615850e-47
Msa0566930	Msa1457850	0.817432	3.308454e-52	-8.615850e-47
Msa0583390	Msa1457850	0.846820	1.707859e-59	-8.615850e-47
Msa0591490	Msa1457850	0.807574	4.729738e-50	-8.615850e-47
Msa0602050	Msa1457850	0.817987	2.479550e-52	-8.615850e-47
Msa0880910	Msa1457850	0.805848	1.095018e-49	-8.615850e-47
Msa0907840	Msa1457850	0.990411	1.657794e-182	-8.615850e-47
Msa0932140	Msa1457850	0.820287	7.428497e-53	-8.615850e-47
Msa0932150	Msa1457850	0.804892	1.736619e-49	-8.615850e-47
Msa0940780	Msa1457850	0.800552	1.365900e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457850	MtrunA17_Chr6g0461381	93.220	59	4	1	59	1	59	1.13e-21	79.0
Msa1457850	MtrunA17_Chr7g0253381	69.492	59	18	1	59	1	59	1.79e-21	78.2
Msa1457850	MtrunA17_Chr6g0461421	94.915	59	3	1	59	1	59	3.77e-21	77.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 7 sgRNAs with CRISPR-Local

Find 13 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAGTAGTAGCATCTGATGT+AGG	0.452027	tig0039241:-19301	Msa1457850:intergenic
ACAAAGGAAGCAATTATTGT+TGG	0.473703	tig0039241:-19331	Msa1457850:intergenic
GTAGCATCTGATGTAGGGCT+TGG	0.485712	tig0039241:-19295	Msa1457850:intergenic
GAGTAGTAGCATCTGATGTA+GGG	0.524730	tig0039241:-19300	Msa1457850:intergenic
GGTGGTGGTGGCCATGATGA+TGG	0.538657	tig0039241:+19237	Msa1457850:CDS
ACTTGATGCTGCCATCATCA+TGG	0.566779	tig0039241:-19248	Msa1457840:intergenic
TCTGATGTAGGGCTTGGAGC+TGG	0.570335	tig0039241:-19289	Msa1457840:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GATGAATCAAATTTTTGCTA+TGG	+	tig0039241:19216-19235	Msa1457850:CDS	25.0%
!!	GAATCAAATTTTTGCTATGG+TGG	+	tig0039241:19219-19238	Msa1457850:CDS	30.0%
	ACAAAGGAAGCAATTATTGT+TGG	-	tig0039241:19334-19353	Msa1457850:intergenic	30.0%
!!	TCAAATTTTTGCTATGGTGG+TGG	+	tig0039241:19222-19241	Msa1457850:CDS	35.0%
!!!	TCCTTTGTTGCTCTTGTTTT+TGG	+	tig0039241:19346-19365	Msa1457850:CDS	35.0%
	TCCAAAAACAAGAGCAACAA+AGG	-	tig0039241:19350-19369	Msa1457850:intergenic	35.0%
!!!	AATTTTTGCTATGGTGGTGG+TGG	+	tig0039241:19225-19244	Msa1457850:CDS	40.0%
	GAGTAGTAGCATCTGATGTA+GGG	-	tig0039241:19303-19322	Msa1457850:intergenic	40.0%
	AGAGTAGTAGCATCTGATGT+AGG	-	tig0039241:19304-19323	Msa1457850:intergenic	40.0%
	ACTTGATGCTGCCATCATCA+TGG	-	tig0039241:19251-19270	Msa1457850:intergenic	45.0%
	GTAGCATCTGATGTAGGGCT+TGG	-	tig0039241:19298-19317	Msa1457850:intergenic	50.0%
	TCTGATGTAGGGCTTGGAGC+TGG	-	tig0039241:19292-19311	Msa1457850:intergenic	55.0%
!!	GGTGGTGGTGGCCATGATGA+TGG	+	tig0039241:19237-19256	Msa1457850:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
tig0039241	gene	19202	19381	19202	ID=Msa1457850;Name=Msa1457850
tig0039241	mRNA	19202	19381	19202	ID=Msa1457850-mRNA-1;Parent=Msa1457850;Name=Msa1457850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|59
tig0039241	exon	19202	19381	19202	ID=Msa1457850-mRNA-1:exon:21434;Parent=Msa1457850-mRNA-1
tig0039241	CDS	19202	19381	19202	ID=Msa1457850-mRNA-1:cds;Parent=Msa1457850-mRNA-1

Gene Sequence	>Msa1457850 ATGGAGGCATTGAAGATGAATCAAATTTTTGCTATGGTGGTGGTGGCCATGATGATGGCAGCATCAAGTGTTTCAGCTGCAGATGCACCAGCTCCAAGCCCTACATCAGATGCTACTACTCTCTTTGTGCCAACAATAATTGCTTCCTTTGTTGCTCTTGTTTTTGGATATCTTTTCTAA
Protein sequence	>Msa1457850 MEALKMNQIFAMVVVAMMMAASSVSAADAPAPSPTSDATTLFVPTIIASFVALVFGYLF*