AlfalfaGEDB | Msa1457850

M. sativa cultivar zhongmu-4 / Msa1457850

KEGG: -
GO: GO:0005575 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016049 GO:0021700 GO:0022622 GO:0030154 GO:0031224 GO:0031225 GO:0032501 GO:0032502 GO:0040007 GO:0044425 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1905392
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457850	GAU50027.1	83.051	59	10	0	1	59	1	59	9.91e-25	96.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457850	A0A2Z6PTB5	83.051	59	10	0	1	59	1	59	4.73e-25	96.7

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004590	Msa1457850	0.808779	2.618504e-50	-8.615850e-47
Msa0009530	Msa1457850	-0.810162	1.321925e-50	-8.615850e-47
Msa0014590	Msa1457850	0.802222	6.213945e-49	-8.615850e-47
Msa0032390	Msa1457850	0.806340	8.627244e-50	-8.615850e-47
Msa0057860	Msa1457850	0.815874	7.391908e-52	-8.615850e-47
Msa0092220	Msa1457850	0.802313	5.953354e-49	-8.615850e-47
Msa0102920	Msa1457850	0.806059	9.885232e-50	-8.615850e-47
Msa0147680	Msa1457850	0.834699	2.577604e-56	-8.615850e-47
Msa0190890	Msa1457850	0.833435	5.342351e-56	-8.615850e-47
Msa0191100	Msa1457850	0.800210	1.604083e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1457850	MtrunA17_Chr6g0461381	93.220	59	4	1	59	1	59	1.13e-21	79.0
Msa1457850	MtrunA17_Chr7g0253381	69.492	59	18	1	59	1	59	1.79e-21	78.2
Msa1457850	MtrunA17_Chr6g0461421	94.915	59	3	1	59	1	59	3.77e-21	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 7 sgRNAs with CRISPR-Local

Find 13 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAAGGAAGCAATTATTGT+TGG	0.473703	tig0039241:-19331	Msa1457850:intergenic
ACTTGATGCTGCCATCATCA+TGG	0.566779	tig0039241:-19248	Msa1457840:intergenic
AGAGTAGTAGCATCTGATGT+AGG	0.452027	tig0039241:-19301	Msa1457850:intergenic
GAGTAGTAGCATCTGATGTA+GGG	0.524730	tig0039241:-19300	Msa1457850:intergenic
GGTGGTGGTGGCCATGATGA+TGG	0.538657	tig0039241:+19237	Msa1457850:CDS
GTAGCATCTGATGTAGGGCT+TGG	0.485712	tig0039241:-19295	Msa1457850:intergenic
TCTGATGTAGGGCTTGGAGC+TGG	0.570335	tig0039241:-19289	Msa1457840:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ACAAAGGAAGCAATTATTGT+TGG	-	tig0039241:19334-19353	Msa1457850:intergenic	30.0%
	TCCAAAAACAAGAGCAACAA+AGG	-	tig0039241:19350-19369	Msa1457850:intergenic	35.0%
	GAGTAGTAGCATCTGATGTA+GGG	-	tig0039241:19303-19322	Msa1457850:intergenic	40.0%
	AGAGTAGTAGCATCTGATGT+AGG	-	tig0039241:19304-19323	Msa1457850:intergenic	40.0%
	ACTTGATGCTGCCATCATCA+TGG	-	tig0039241:19251-19270	Msa1457850:intergenic	45.0%
	GTAGCATCTGATGTAGGGCT+TGG	-	tig0039241:19298-19317	Msa1457850:intergenic	50.0%
	TCTGATGTAGGGCTTGGAGC+TGG	-	tig0039241:19292-19311	Msa1457850:intergenic	55.0%
!!	GATGAATCAAATTTTTGCTA+TGG	+	tig0039241:19216-19235	Msa1457850:CDS	25.0%
!!	GAATCAAATTTTTGCTATGG+TGG	+	tig0039241:19219-19238	Msa1457850:CDS	30.0%
!!	TCAAATTTTTGCTATGGTGG+TGG	+	tig0039241:19222-19241	Msa1457850:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0039241	gene	19202	19381	19202	ID=Msa1457850;Name=Msa1457850
tig0039241	mRNA	19202	19381	19202	ID=Msa1457850-mRNA-1;Parent=Msa1457850;Name=Msa1457850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|59
tig0039241	exon	19202	19381	19202	ID=Msa1457850-mRNA-1:exon:21434;Parent=Msa1457850-mRNA-1
tig0039241	CDS	19202	19381	19202	ID=Msa1457850-mRNA-1:cds;Parent=Msa1457850-mRNA-1

Gene Sequence	>Msa1457850 ATGGAGGCATTGAAGATGAATCAAATTTTTGCTATGGTGGTGGTGGCCATGATGATGGCAGCATCAAGTGTTTCAGCTGCAGATGCACCAGCTCCAAGCCCTACATCAGATGCTACTACTCTCTTTGTGCCAACAATAATTGCTTCCTTTGTTGCTCTTGTTTTTGGATATCTTTTCTAA
Protein sequence	>Msa1457850 MEALKMNQIFAMVVVAMMMAASSVSAADAPAPSPTSDATTLFVPTIIASFVALVFGYLF*