AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0440720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440720 MtrunA17_Chr3g0078481 83.136 338 16 4 1 297 46 383 0.0 524
Msa0440720 MtrunA17_Chr3g0114921 61.562 333 84 6 3 292 112 443 6.53e-131 379
Msa0440720 MtrunA17_Chr3g0114931 56.024 332 97 8 6 294 114 439 1.48e-104 311
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440720 AT2G41705.3 53.659 328 114 4 3 292 129 456 1.11e-103 310
Msa0440720 AT2G41705.2 53.659 328 114 4 3 292 129 456 1.11e-103 310
Msa0440720 AT2G41705.4 53.659 328 114 4 3 292 129 456 1.11e-103 310
Msa0440720 AT2G41705.1 53.659 328 114 4 3 292 129 456 1.11e-103 310

Find 67 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATACTGTGTGCCTATT+TGG 0.130972 3_3:-8421791 Msa0440720:CDS
TAAAGAATTGCCAAAGTTAT+TGG 0.149331 3_3:-8425150 Msa0440720:CDS
TATACTCTGGACAAGTTATT+TGG 0.190006 3_3:-8424280 Msa0440720:CDS
GTTTCAAGTGGCTTCTTATA+AGG 0.252360 3_3:-8422925 Msa0440720:CDS
ATGTCTCTGCTGCTTGTATC+AGG 0.255614 3_3:-8422646 Msa0440720:CDS
GCTAAACTTGACTTCTTATA+AGG 0.264542 3_3:-8422903 Msa0440720:CDS
CTCTTGGTGTGTGGATTAGA+TGG 0.264943 3_3:-8422748 Msa0440720:CDS
AATTCATCCATTCTCCAAAT+AGG 0.275234 3_3:+8421777 None:intergenic
CACGACAATATTACCTTCTA+TGG 0.281497 3_3:+8421739 None:intergenic
TGCTTCATATTTGATTCATT+TGG 0.285021 3_3:-8425123 Msa0440720:CDS
ATGCTTGAACTCAGTGTTAC+TGG 0.290373 3_3:-8423668 Msa0440720:CDS
CCTTGACCTTCCTTCTAATA+TGG 0.294484 3_3:-8424215 Msa0440720:intron
GATTGTGATACTATTGTAAA+AGG 0.321077 3_3:-8421957 Msa0440720:CDS
CTAATCCGTGTCCATTTAAT+CGG 0.336275 3_3:+8422717 None:intergenic
CGATTAAATGGACACGGATT+AGG 0.337074 3_3:-8422716 Msa0440720:CDS
AACTCAGTGTTACTGGGAAT+TGG 0.357866 3_3:-8423661 Msa0440720:CDS
AATTGGCTCTTTGTTGTGCT+TGG 0.359346 3_3:-8423644 Msa0440720:CDS
GTTGTGCTTGGCTTTCTAAT+AGG 0.360921 3_3:-8423632 Msa0440720:intron
ATGGATGAATTATAAATTCC+AGG 0.370019 3_3:-8421765 Msa0440720:exon
ATTGTAAAAGGCATACAGTT+TGG 0.380838 3_3:-8421945 Msa0440720:CDS
GCTTGCATGGTTGGACCTCT+TGG 0.383806 3_3:-8422764 Msa0440720:CDS
AACTTTGGCAATTCTTTACT+AGG 0.383927 3_3:+8425155 None:intergenic
TGAGAGAAAGCGAGCATCCT+TGG 0.409469 3_3:-8421869 Msa0440720:CDS
GCACTAACAACTGGTTACTT+AGG 0.409745 3_3:-8423725 Msa0440720:CDS
GATCAAGAGGTTTGTTGAGT+TGG 0.420442 3_3:-8422694 Msa0440720:CDS
TACAATAGTATCACAATCTC+TGG 0.421227 3_3:+8421962 None:intergenic
GTCTAACAACGTTCAGCGGC+TGG 0.427914 3_3:-8423700 Msa0440720:CDS
GTGACAGTTCATTTACTTGA+AGG 0.431162 3_3:-8421719 Msa0440720:three_prime_UTR
AAATTCCAGGTAGCCATAGA+AGG 0.448639 3_3:-8421752 Msa0440720:three_prime_UTR
CTGTGGATCGCTTGCATGGT+TGG 0.449451 3_3:-8422773 Msa0440720:CDS
CTGGCTGTTGCACTAACAAC+TGG 0.450496 3_3:-8423734 Msa0440720:CDS
TTGTTGAGTTGGATGCGATT+TGG 0.450759 3_3:-8422683 Msa0440720:CDS
AAAGTAGAGACCATATTAGA+AGG 0.455328 3_3:+8424205 None:intergenic
GAAGCATTATCCAATAACTT+TGG 0.459077 3_3:+8425140 None:intergenic
TATCCCAAATATGATGGAAA+AGG 0.466392 3_3:+8422961 None:intergenic
CACTAACAACTGGTTACTTA+GGG 0.468627 3_3:-8423724 Msa0440720:CDS
AGGCATACAGTTTGGCCTGA+TGG 0.477767 3_3:-8421937 Msa0440720:CDS
GGCATACAGTTTGGCCTGAT+GGG 0.477918 3_3:-8421936 Msa0440720:CDS
TTCTCTCATTTCATTGAACT+CGG 0.491070 3_3:+8421884 None:intergenic
AGGAAGGTCAAGGTAAAGAA+TGG 0.496325 3_3:+8424225 None:intergenic
CTAGTCACATGACCGACACT+AGG 0.497152 3_3:+8424256 None:intergenic
ATGATTGCTGAATTCAAGAA+TGG 0.511956 3_3:-8422809 Msa0440720:CDS
TAAACACTTAGCAGTTATAG+TGG 0.520490 3_3:-8422879 Msa0440720:CDS
TTTGGGATAGAAACAGCTAA+AGG 0.521423 3_3:-8422947 Msa0440720:CDS
CTGTGTGCCTATTTGGAGAA+TGG 0.525340 3_3:-8421784 Msa0440720:CDS
TTCATTGAACTCGGCAACAA+AGG 0.530538 3_3:+8421893 None:intergenic
CAGTGCTCAAACAACCCATC+AGG 0.538111 3_3:+8421922 None:intergenic
TAATCCGTGTCCATTTAATC+GGG 0.543035 3_3:+8422718 None:intergenic
TGTTTCTATCCCAAATATGA+TGG 0.543659 3_3:+8422955 None:intergenic
TATTACCTTCTATGGCTACC+TGG 0.545154 3_3:+8421747 None:intergenic
TGCTTGAACTCAGTGTTACT+GGG 0.546484 3_3:-8423667 Msa0440720:CDS
TGTCTCTGCTGCTTGTATCA+GGG 0.553145 3_3:-8422645 Msa0440720:CDS
GGTATTAACAAGATATACTC+TGG 0.561065 3_3:-8424293 Msa0440720:CDS
GGTCAAGGTAAAGAATGGTT+TGG 0.564374 3_3:+8424230 None:intergenic
AAGTTATTTGGCCCTAGTGT+CGG 0.566597 3_3:-8424268 Msa0440720:CDS
TAGAGACCATATTAGAAGGA+AGG 0.567138 3_3:+8424209 None:intergenic
TGGTTGGACCTCTTGGTGTG+TGG 0.574188 3_3:-8422757 Msa0440720:CDS
TTATCTGTGGATCGCTTGCA+TGG 0.589765 3_3:-8422777 Msa0440720:CDS
AAACAGCTAAAGGTTTCAAG+TGG 0.608710 3_3:-8422937 Msa0440720:CDS
GTATAAACATATGCTCTCCA+AGG 0.612277 3_3:+8421852 None:intergenic
TTATCCCGATTAAATGGACA+CGG 0.612286 3_3:-8422722 Msa0440720:CDS
TAGTCACATGACCGACACTA+GGG 0.613234 3_3:+8424257 None:intergenic
GGACACGGATTAGGATCAAG+AGG 0.621332 3_3:-8422707 Msa0440720:CDS
CCATATTAGAAGGAAGGTCA+AGG 0.628711 3_3:+8424215 None:intergenic
GGGAGTCTAACAACGTTCAG+CGG 0.633659 3_3:-8423704 Msa0440720:CDS
CATCTAATCCACACACCAAG+AGG 0.633898 3_3:+8422749 None:intergenic
ATGGTGAAAATGCTTATCTG+TGG 0.657260 3_3:-8422790 Msa0440720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAATTTCAATTATTGTA+CGG - chr3_3:8423019-8423038 Msa0440720:intron 10.0%
!!! TATTTTAAATAATCAATCAT+AGG + chr3_3:8423685-8423704 None:intergenic 10.0%
!!! ATTTCTTATTATTTTGATTA+CGG - chr3_3:8425572-8425591 Msa0440720:intron 10.0%
!!! ATATGTTTTTAATGATTTGA+CGG + chr3_3:8422322-8422341 None:intergenic 15.0%
!! TCATTAAAAACATATATGAT+TGG - chr3_3:8422327-8422346 Msa0440720:intron 15.0%
!!! GTAAATTTTTTATACACTAT+CGG + chr3_3:8422386-8422405 None:intergenic 15.0%
!!! TCATTTTCTGTTTATAATAT+CGG - chr3_3:8422950-8422969 Msa0440720:CDS 15.0%
!! AACAATAATCATGTATTATA+GGG - chr3_3:8424525-8424544 Msa0440720:intron 15.0%
!!! TTTCTTATTATTTTGATTAC+GGG - chr3_3:8425573-8425592 Msa0440720:intron 15.0%
!! TAATTTCACATTTCACAAAT+AGG + chr3_3:8421619-8421638 None:intergenic 20.0%
!!! AGAAAGAAAAATTACACTTT+TGG - chr3_3:8421662-8421681 Msa0440720:three_prime_UTR 20.0%
!! ATTCATTATATCACATGAAA+TGG - chr3_3:8422055-8422074 Msa0440720:intron 20.0%
!!! AAGATTCAAAACATTTTTGT+TGG - chr3_3:8422239-8422258 Msa0440720:intron 20.0%
!!! TTTTGTTTTCTTATGGTAAA+TGG - chr3_3:8422413-8422432 Msa0440720:intron 20.0%
!! AAACATGATAAAGTTTAAGT+TGG + chr3_3:8422806-8422825 None:intergenic 20.0%
!! AACTTAAACTTTATCATGTT+TGG - chr3_3:8422805-8422824 Msa0440720:CDS 20.0%
!! AACAGAAAATGAAAATCAAT+AGG + chr3_3:8422942-8422961 None:intergenic 20.0%
!! ATTATATTGCCCAAAAATAA+AGG + chr3_3:8423222-8423241 None:intergenic 20.0%
!! TATAATGAACTTATGAATTC+TGG - chr3_3:8423236-8423255 Msa0440720:intron 20.0%
!! AAACTATAGTTTATGAGAAA+AGG - chr3_3:8423634-8423653 Msa0440720:CDS 20.0%
!!! TACTGTTCAATAACTTTTTA+CGG - chr3_3:8424232-8424251 Msa0440720:CDS 20.0%
!!! AATTGTAAGTTTTGTAATAC+AGG - chr3_3:8424474-8424493 Msa0440720:intron 20.0%
!! CAACAATAATCATGTATTAT+AGG - chr3_3:8424524-8424543 Msa0440720:intron 20.0%
!! TACTAGAAGAAAAGAAAAAA+AGG - chr3_3:8425176-8425195 Msa0440720:intron 20.0%
!! AAAAAAGGAAAACTATATTC+AGG - chr3_3:8425191-8425210 Msa0440720:intron 20.0%
!! AAAAAGGAAAACTATATTCA+GGG - chr3_3:8425192-8425211 Msa0440720:intron 20.0%
!!! ATTTAATTTCATGTTTCAAG+AGG - chr3_3:8425222-8425241 Msa0440720:intron 20.0%
!! GTGTAATTTTTCTTTCTTTG+AGG + chr3_3:8421659-8421678 None:intergenic 25.0%
!!! ATTTTAGCTACTCACTTTTA+GGG + chr3_3:8421820-8421839 None:intergenic 25.0%
! AATCGTCAATTTATGAAAGT+TGG - chr3_3:8421837-8421856 Msa0440720:CDS 25.0%
! ATCGTCAATTTATGAAAGTT+GGG - chr3_3:8421838-8421857 Msa0440720:CDS 25.0%
! CCTAATAGTTAGTATATTGA+GGG - chr3_3:8421880-8421899 Msa0440720:CDS 25.0%
!!! TGTACTCTTTTGTTTTCTTA+TGG - chr3_3:8422406-8422425 Msa0440720:intron 25.0%
! TAAAGAATTGCCAAAGTTAT+TGG - chr3_3:8422477-8422496 Msa0440720:intron 25.0%
! TGCTTCATATTTGATTCATT+TGG - chr3_3:8422504-8422523 Msa0440720:intron 25.0%
!! ATTTTATCATTGAAGTTCAG+AGG + chr3_3:8422562-8422581 None:intergenic 25.0%
! TGAAATAAAACCTCATGTAA+TGG - chr3_3:8422886-8422905 Msa0440720:CDS 25.0%
!! GATTATCTTCATCATCTTTT+AGG - chr3_3:8422988-8423007 Msa0440720:intron 25.0%
! GTTGTTCATACTTTATACAA+TGG + chr3_3:8423073-8423092 None:intergenic 25.0%
!!! TTGTTGCATTCCTTTATTTT+TGG - chr3_3:8423209-8423228 Msa0440720:intron 25.0%
!!! TGTTGCATTCCTTTATTTTT+GGG - chr3_3:8423210-8423229 Msa0440720:intron 25.0%
!!! TTGTTTTGCTATTATAATGC+AGG - chr3_3:8423313-8423332 Msa0440720:intron 25.0%
! TTGATGTCATTATGATACAA+AGG + chr3_3:8423508-8423527 None:intergenic 25.0%
!! AAAAGTGTAGACTTAATTTC+TGG - chr3_3:8423533-8423552 Msa0440720:intron 25.0%
! CAACTATAGTTTATGAGAAA+AGG - chr3_3:8423611-8423630 Msa0440720:intron 25.0%
!! ACTTTTATGAATGTCTTTCT+AGG - chr3_3:8423802-8423821 Msa0440720:intron 25.0%
! TCTAATAGGTAATGTTAAGA+AGG - chr3_3:8424009-8424028 Msa0440720:intron 25.0%
!!! GTTTGATAAGTATGTTTTAG+TGG - chr3_3:8424035-8424054 Msa0440720:intron 25.0%
!!! ATAAGTATGTTTTAGTGGTA+TGG - chr3_3:8424040-8424059 Msa0440720:intron 25.0%
!! TTTTATATGAGAACTAGAGA+AGG - chr3_3:8424302-8424321 Msa0440720:intron 25.0%
! TTTATATGAGAACTAGAGAA+GGG - chr3_3:8424303-8424322 Msa0440720:intron 25.0%
! ACATGAATATTAGATTGAGA+AGG + chr3_3:8425064-8425083 None:intergenic 25.0%
!!! TTTTGTTTATGTTCGTGAAT+AGG - chr3_3:8425133-8425152 Msa0440720:CDS 25.0%
! ATACAAAGTTGTAACAAAAG+TGG + chr3_3:8425321-8425340 None:intergenic 25.0%
!! GTTGACGTTTTTAAACATAA+AGG - chr3_3:8425458-8425477 Msa0440720:intron 25.0%
! ATAGATGAAACACATGTTAA+AGG - chr3_3:8425498-8425517 Msa0440720:intron 25.0%
!!! TTTTTTGACAAAACTGCAAT+AGG + chr3_3:8425527-8425546 None:intergenic 25.0%
! GATTGTGATACTATTGTAAA+AGG - chr3_3:8425670-8425689 Msa0440720:intron 25.0%
!! ATTTGTTCCTCATTCTTTTT+AGG - chr3_3:8425808-8425827 Msa0440720:intron 25.0%
!! TTTGTTCCTCATTCTTTTTA+GGG - chr3_3:8425809-8425828 Msa0440720:intron 25.0%
! ATGGATGAATTATAAATTCC+AGG - chr3_3:8425862-8425881 Msa0440720:intron 25.0%
TTTGCAAAAATGGACAAAAG+TGG - chr3_3:8421790-8421809 Msa0440720:CDS 30.0%
TTGCAAAAATGGACAAAAGT+GGG - chr3_3:8421791-8421810 Msa0440720:CDS 30.0%
!!! GATTTTAGCTACTCACTTTT+AGG + chr3_3:8421821-8421840 None:intergenic 30.0%
TCGTCAATTTATGAAAGTTG+GGG - chr3_3:8421839-8421858 Msa0440720:CDS 30.0%
GCCTAATAGTTAGTATATTG+AGG - chr3_3:8421879-8421898 Msa0440720:CDS 30.0%
CCCTCAATATACTAACTATT+AGG + chr3_3:8421883-8421902 None:intergenic 30.0%
!!! GTGCTGTTTATTTTCTTGAA+TGG - chr3_3:8421917-8421936 Msa0440720:CDS 30.0%
AAAAATAGAGGAGACAGAAT+TGG + chr3_3:8422126-8422145 None:intergenic 30.0%
AGATGTTAAGGGAAAAATAG+AGG + chr3_3:8422138-8422157 None:intergenic 30.0%
GACATTTGTTCAGATGTTAA+GGG + chr3_3:8422149-8422168 None:intergenic 30.0%
TCTTTCAATGCTTAAAAGAG+GGG + chr3_3:8422171-8422190 None:intergenic 30.0%
CTCTTTCAATGCTTAAAAGA+GGG + chr3_3:8422172-8422191 None:intergenic 30.0%
TCTCTTTCAATGCTTAAAAG+AGG + chr3_3:8422173-8422192 None:intergenic 30.0%
AACTTTGGCAATTCTTTACT+AGG + chr3_3:8422475-8422494 None:intergenic 30.0%
! GAAGCATTATCCAATAACTT+TGG + chr3_3:8422490-8422509 None:intergenic 30.0%
!! TTGATTCATTTGGCTGTTTT+CGG - chr3_3:8422514-8422533 Msa0440720:intron 30.0%
GTAATGGTCAAATGGAAATA+AGG + chr3_3:8422614-8422633 None:intergenic 30.0%
! ACTATTTTCAGTTCATGTTG+TGG - chr3_3:8422655-8422674 Msa0440720:CDS 30.0%
ATATGAGTACTATAGTGAAC+TGG + chr3_3:8422735-8422754 None:intergenic 30.0%
GTTTATAATATCGGTCGTAT+AGG - chr3_3:8422959-8422978 Msa0440720:CDS 30.0%
!!! TTCATCATCTTTTAGGATCT+AGG - chr3_3:8422995-8423014 Msa0440720:intron 30.0%
GGTATTAACAAGATATACTC+TGG - chr3_3:8423334-8423353 Msa0440720:intron 30.0%
TATACTCTGGACAAGTTATT+TGG - chr3_3:8423347-8423366 Msa0440720:intron 30.0%
AAAGTAGAGACCATATTAGA+AGG + chr3_3:8423425-8423444 None:intergenic 30.0%
GTCATTATGATACAAAGGAA+TGG + chr3_3:8423503-8423522 None:intergenic 30.0%
CGGAGCTTCTTAAAAATTTA+AGG + chr3_3:8423742-8423761 None:intergenic 30.0%
! TCAAAAAAGTCTGTTGCTTA+TGG + chr3_3:8423778-8423797 None:intergenic 30.0%
TTATGAATGTCTTTCTAGGT+TGG - chr3_3:8423806-8423825 Msa0440720:intron 30.0%
!!! TAGGTTGGTTCTTTTCTTAT+GGG - chr3_3:8423821-8423840 Msa0440720:intron 30.0%
! AGGATGAGCTTTTGAATAAT+TGG - chr3_3:8424618-8424637 Msa0440720:intron 30.0%
! TTGCCTTTTCCATCATATTT+GGG - chr3_3:8424663-8424682 Msa0440720:intron 30.0%
! TATCCCAAATATGATGGAAA+AGG + chr3_3:8424669-8424688 None:intergenic 30.0%
! TGTTTCTATCCCAAATATGA+TGG + chr3_3:8424675-8424694 None:intergenic 30.0%
GCTAAACTTGACTTCTTATA+AGG - chr3_3:8424724-8424743 Msa0440720:intron 30.0%
TAAACACTTAGCAGTTATAG+TGG - chr3_3:8424748-8424767 Msa0440720:intron 30.0%
ATGATTGCTGAATTCAAGAA+TGG - chr3_3:8424818-8424837 Msa0440720:intron 30.0%
! AGAAATGAAAGTTGGTTCAA+CGG + chr3_3:8425295-8425314 None:intergenic 30.0%
ATATCTCACTTGTTTGATGT+AGG - chr3_3:8425636-8425655 Msa0440720:intron 30.0%
TACAATAGTATCACAATCTC+TGG + chr3_3:8425668-8425687 None:intergenic 30.0%
! ATTGTAAAAGGCATACAGTT+TGG - chr3_3:8425682-8425701 Msa0440720:intron 30.0%
TTCTCTCATTTCATTGAACT+CGG + chr3_3:8425746-8425765 None:intergenic 30.0%
TAAGATCCCTAAAAAGAATG+AGG + chr3_3:8425818-8425837 None:intergenic 30.0%
TAATATACTGTGTGCCTATT+TGG - chr3_3:8425836-8425855 Msa0440720:intron 30.0%
AATTCATCCATTCTCCAAAT+AGG + chr3_3:8425853-8425872 None:intergenic 30.0%
!! AATTGCTGGTTTGTGTAAGT+GGG + chr3_3:8421690-8421709 None:intergenic 35.0%
!! AAATTGCTGGTTTGTGTAAG+TGG + chr3_3:8421691-8421710 None:intergenic 35.0%
! CTTACACAAACCAGCAATTT+TGG - chr3_3:8421691-8421710 Msa0440720:three_prime_UTR 35.0%
!! TGACTTGGTCAAAATCAATG+TGG - chr3_3:8421759-8421778 Msa0440720:exon 35.0%
! GGATGTCAGTTTTGCAAAAA+TGG - chr3_3:8421780-8421799 Msa0440720:CDS 35.0%
CGTCAATTTATGAAAGTTGG+GGG - chr3_3:8421840-8421859 Msa0440720:CDS 35.0%
GAATTCATAGAGAAGAAGAG+AGG + chr3_3:8421988-8422007 None:intergenic 35.0%
AACAAATTGCAGCTTCATCT+TGG - chr3_3:8422095-8422114 Msa0440720:intron 35.0%
GGACATTTGTTCAGATGTTA+AGG + chr3_3:8422150-8422169 None:intergenic 35.0%
! AGATTCTGAAGACATACAAC+AGG - chr3_3:8422193-8422212 Msa0440720:intron 35.0%
!! GATTGGTTGTGATTTGTTGA+CGG - chr3_3:8422344-8422363 Msa0440720:intron 35.0%
! TGCGAGTAGTTAATCGTTTT+TGG - chr3_3:8422583-8422602 Msa0440720:intron 35.0%
TCCATTTGACCATTACTAGT+TGG - chr3_3:8422618-8422637 Msa0440720:intron 35.0%
TCCAACTAGTAATGGTCAAA+TGG + chr3_3:8422622-8422641 None:intergenic 35.0%
ACCATTACTAGTTGGAGTTA+CGG - chr3_3:8422626-8422645 Msa0440720:CDS 35.0%
ACATTGTACACCATTACATG+AGG + chr3_3:8422899-8422918 None:intergenic 35.0%
!! TGTCCTGTATTTTTCAACCT+AGG - chr3_3:8423110-8423129 Msa0440720:intron 35.0%
!! GTCCTGTATTTTTCAACCTA+GGG - chr3_3:8423111-8423130 Msa0440720:intron 35.0%
! TTCCCTAGGTTGAAAAATAC+AGG + chr3_3:8423116-8423135 None:intergenic 35.0%
TCTGGTCATACTTTCATACA+AGG - chr3_3:8423254-8423273 Msa0440720:intron 35.0%
TAGAGACCATATTAGAAGGA+AGG + chr3_3:8423421-8423440 None:intergenic 35.0%
AATATGTATGTCAGAGAGAG+AGG + chr3_3:8423467-8423486 None:intergenic 35.0%
CTGGTAACATTAGACAATGA+TGG - chr3_3:8423552-8423571 Msa0440720:intron 35.0%
!!! CTAGGTTGGTTCTTTTCTTA+TGG - chr3_3:8423820-8423839 Msa0440720:intron 35.0%
!! TTGGTTCTTTTCTTATGGGA+TGG - chr3_3:8423825-8423844 Msa0440720:intron 35.0%
! TCTTTTCTTATGGGATGGTT+TGG - chr3_3:8423830-8423849 Msa0440720:intron 35.0%
ATCAAATGTGTCCAAGTATC+TGG - chr3_3:8423874-8423893 Msa0440720:intron 35.0%
CACTAACAACTGGTTACTTA+GGG - chr3_3:8423903-8423922 Msa0440720:intron 35.0%
TATATGACAAAACTCACCGT+TGG - chr3_3:8424260-8424279 Msa0440720:CDS 35.0%
GAGAAGGGATCAAATTACAT+TGG - chr3_3:8424318-8424337 Msa0440720:intron 35.0%
TTGAATAATTGGAGTTCTGC+AGG - chr3_3:8424629-8424648 Msa0440720:intron 35.0%
TGAATAATTGGAGTTCTGCA+GGG - chr3_3:8424630-8424649 Msa0440720:intron 35.0%
! GTTGCCTTTTCCATCATATT+TGG - chr3_3:8424662-8424681 Msa0440720:intron 35.0%
! TTTGGGATAGAAACAGCTAA+AGG - chr3_3:8424680-8424699 Msa0440720:intron 35.0%
AAACAGCTAAAGGTTTCAAG+TGG - chr3_3:8424690-8424709 Msa0440720:intron 35.0%
! GTTTCAAGTGGCTTCTTATA+AGG - chr3_3:8424702-8424721 Msa0440720:intron 35.0%
!!! GTGGTGTTTTTGCTGATTTT+AGG - chr3_3:8424767-8424786 Msa0440720:intron 35.0%
!!! TGCTGATTTTAGGCTTGTTA+TGG - chr3_3:8424777-8424796 Msa0440720:intron 35.0%
!!! GCTGATTTTAGGCTTGTTAT+GGG - chr3_3:8424778-8424797 Msa0440720:intron 35.0%
!!! CTGATTTTAGGCTTGTTATG+GGG - chr3_3:8424779-8424798 Msa0440720:intron 35.0%
ATGGTGAAAATGCTTATCTG+TGG - chr3_3:8424837-8424856 Msa0440720:intron 35.0%
! TGGCTTTTATCCCGATTAAA+TGG - chr3_3:8424899-8424918 Msa0440720:intron 35.0%
TTATCCCGATTAAATGGACA+CGG - chr3_3:8424905-8424924 Msa0440720:intron 35.0%
TAATCCGTGTCCATTTAATC+GGG + chr3_3:8424912-8424931 None:intergenic 35.0%
CTAATCCGTGTCCATTTAAT+CGG + chr3_3:8424913-8424932 None:intergenic 35.0%
GAACTTTCATAGCTATAACC+TGG - chr3_3:8425090-8425109 Msa0440720:intron 35.0%
!! ACTTTTGATTCTTCGAAACC+AGG + chr3_3:8425111-8425130 None:intergenic 35.0%
AGTGGAACAGAAATGAAAGT+TGG + chr3_3:8425303-8425322 None:intergenic 35.0%
TGCATGATCACTGAATGATA+TGG - chr3_3:8425340-8425359 Msa0440720:intron 35.0%
GTATAAACATATGCTCTCCA+AGG + chr3_3:8425778-8425797 None:intergenic 35.0%
CACGACAATATTACCTTCTA+TGG + chr3_3:8425891-8425910 None:intergenic 35.0%
GTGACAGTTCATTTACTTGA+AGG - chr3_3:8425908-8425927 Msa0440720:intron 35.0%
TAGCAGCTACTTGAAAAAAC+TGG + chr3_3:8426001-8426020 None:intergenic 35.0%
!! ATTGCTGGTTTGTGTAAGTG+GGG + chr3_3:8421689-8421708 None:intergenic 40.0%
ATTGCCTGTTTGTGTAGGTT+GGG + chr3_3:8421719-8421738 None:intergenic 40.0%
AATTGCCTGTTTGTGTAGGT+TGG + chr3_3:8421720-8421739 None:intergenic 40.0%
CCAAAATTGCCTGTTTGTGT+AGG + chr3_3:8421724-8421743 None:intergenic 40.0%
! CCTACACAAACAGGCAATTT+TGG - chr3_3:8421721-8421740 Msa0440720:three_prime_UTR 40.0%
!! TGATTTTGACCAAGTCAAGC+CGG + chr3_3:8421756-8421775 None:intergenic 40.0%
CAAAAATGGACAAAAGTGGG+AGG - chr3_3:8421794-8421813 Msa0440720:CDS 40.0%
CATGAAATGGAGCATGATGT+TGG - chr3_3:8422068-8422087 Msa0440720:intron 40.0%
!! TTGGCTGTTTTCGGTATTCT+CGG - chr3_3:8422523-8422542 Msa0440720:intron 40.0%
ACCGTAACTCCAACTAGTAA+TGG + chr3_3:8422630-8422649 None:intergenic 40.0%
GGAATAAATGCAACTACTGC+AGG + chr3_3:8423052-8423071 None:intergenic 40.0%
AAGTTATTTGGCCCTAGTGT+CGG - chr3_3:8423359-8423378 Msa0440720:intron 40.0%
GGTCAAGGTAAAGAATGGTT+TGG + chr3_3:8423400-8423419 None:intergenic 40.0%
AGGAAGGTCAAGGTAAAGAA+TGG + chr3_3:8423405-8423424 None:intergenic 40.0%
CCATATTAGAAGGAAGGTCA+AGG + chr3_3:8423415-8423434 None:intergenic 40.0%
CCTTGACCTTCCTTCTAATA+TGG - chr3_3:8423412-8423431 Msa0440720:intron 40.0%
CTTATGGAGAAGTTAGACGA+CGG + chr3_3:8423762-8423781 None:intergenic 40.0%
GCACTAACAACTGGTTACTT+AGG - chr3_3:8423902-8423921 Msa0440720:intron 40.0%
ATGCTTGAACTCAGTGTTAC+TGG - chr3_3:8423959-8423978 Msa0440720:intron 40.0%
! TGCTTGAACTCAGTGTTACT+GGG - chr3_3:8423960-8423979 Msa0440720:intron 40.0%
! AACTCAGTGTTACTGGGAAT+TGG - chr3_3:8423966-8423985 Msa0440720:intron 40.0%
! AATTGGCTCTTTGTTGTGCT+TGG - chr3_3:8423983-8424002 Msa0440720:intron 40.0%
! GTTGTGCTTGGCTTTCTAAT+AGG - chr3_3:8423995-8424014 Msa0440720:intron 40.0%
CAGAGGAACTTTCAATCCAA+CGG + chr3_3:8424279-8424298 None:intergenic 40.0%
! GTTCTCATATAAAAGCGCAG+AGG + chr3_3:8424296-8424315 None:intergenic 40.0%
ACACACACACACATATGAGA+AGG + chr3_3:8424564-8424583 None:intergenic 40.0%
AATTATCGCAGTCTATGCAG+CGG - chr3_3:8424586-8424605 Msa0440720:intron 40.0%
CGATTAAATGGACACGGATT+AGG - chr3_3:8424911-8424930 Msa0440720:intron 40.0%
!! GATCAAGAGGTTTGTTGAGT+TGG - chr3_3:8424933-8424952 Msa0440720:intron 40.0%
!! TTGTTGAGTTGGATGCGATT+TGG - chr3_3:8424944-8424963 Msa0440720:intron 40.0%
TTCATTGAACTCGGCAACAA+AGG + chr3_3:8425737-8425756 None:intergenic 40.0%
AAATTCCAGGTAGCCATAGA+AGG - chr3_3:8425875-8425894 Msa0440720:intron 40.0%
TATTACCTTCTATGGCTACC+TGG + chr3_3:8425883-8425902 None:intergenic 40.0%
!! TTGCTGGTTTGTGTAAGTGG+GGG + chr3_3:8421688-8421707 None:intergenic 45.0%
TTGCCTGTTTGTGTAGGTTG+GGG + chr3_3:8421718-8421737 None:intergenic 45.0%
GAGAGCAAGAACAGAGGTTA+TGG + chr3_3:8421966-8421985 None:intergenic 45.0%
TGACTGTTGTCTTCAGTTGC+AGG - chr3_3:8422447-8422466 Msa0440720:intron 45.0%
!! TGGCTGTTTTCGGTATTCTC+GGG - chr3_3:8422524-8422543 Msa0440720:intron 45.0%
!!! CAGTTTTGAGCAGATTCCCT+AGG + chr3_3:8423130-8423149 None:intergenic 45.0%
TAGTCACATGACCGACACTA+GGG + chr3_3:8423373-8423392 None:intergenic 45.0%
TAGTGCAACAGCCAGATACT+TGG + chr3_3:8423888-8423907 None:intergenic 45.0%
CTATGCAGCGGTGAATTGAT+AGG - chr3_3:8424598-8424617 Msa0440720:intron 45.0%
!! GGCTTGTTATGGGGTATTAG+TGG - chr3_3:8424788-8424807 Msa0440720:intron 45.0%
TTATCTGTGGATCGCTTGCA+TGG - chr3_3:8424850-8424869 Msa0440720:intron 45.0%
CATCTAATCCACACACCAAG+AGG + chr3_3:8424881-8424900 None:intergenic 45.0%
!! CTCTTGGTGTGTGGATTAGA+TGG - chr3_3:8424879-8424898 Msa0440720:intron 45.0%
! ATGTCTCTGCTGCTTGTATC+AGG - chr3_3:8424981-8425000 Msa0440720:intron 45.0%
! TGTCTCTGCTGCTTGTATCA+GGG - chr3_3:8424982-8425001 Msa0440720:intron 45.0%
GGTCTAACTGTGATGTTGAG+TGG + chr3_3:8425382-8425401 None:intergenic 45.0%
GATTGTGTCCTCGTTATCGA+GGG + chr3_3:8425403-8425422 None:intergenic 45.0%
AGATTGTGTCCTCGTTATCG+AGG + chr3_3:8425404-8425423 None:intergenic 45.0%
CTGTGTGCCTATTTGGAGAA+TGG - chr3_3:8425843-8425862 Msa0440720:intron 45.0%
! TGCCTGTTTGTGTAGGTTGG+GGG + chr3_3:8421717-8421736 None:intergenic 50.0%
!!! GCAATTTTGGCTCCCAACAC+CGG - chr3_3:8421734-8421753 Msa0440720:three_prime_UTR 50.0%
AGAGAGGAGAGCAAGAACAG+AGG + chr3_3:8421972-8421991 None:intergenic 50.0%
!! GGCTGTTTTCGGTATTCTCG+GGG - chr3_3:8422525-8422544 Msa0440720:intron 50.0%
CTAGTCACATGACCGACACT+AGG + chr3_3:8423374-8423393 None:intergenic 50.0%
CTGGCTGTTGCACTAACAAC+TGG - chr3_3:8423893-8423912 Msa0440720:intron 50.0%
GGGAGTCTAACAACGTTCAG+CGG - chr3_3:8423923-8423942 Msa0440720:intron 50.0%
!! GGACACGGATTAGGATCAAG+AGG - chr3_3:8424920-8424939 Msa0440720:intron 50.0%
CAGTTAGACCCTCGATAACG+AGG - chr3_3:8425392-8425411 Msa0440720:intron 50.0%
AGGCATACAGTTTGGCCTGA+TGG - chr3_3:8425690-8425709 Msa0440720:intron 50.0%
GGCATACAGTTTGGCCTGAT+GGG - chr3_3:8425691-8425710 Msa0440720:intron 50.0%
CAGTGCTCAAACAACCCATC+AGG + chr3_3:8425708-8425727 None:intergenic 50.0%
TGAGAGAAAGCGAGCATCCT+TGG - chr3_3:8425758-8425777 Msa0440720:intron 50.0%
AGGTTGGGGGCCAAAATTGC+TGG + chr3_3:8421704-8421723 None:intergenic 55.0%
GACCAAGTCAAGCCGGTGTT+GGG + chr3_3:8421749-8421768 None:intergenic 55.0%
TGACCAAGTCAAGCCGGTGT+TGG + chr3_3:8421750-8421769 None:intergenic 55.0%
AGAGAGGAACGAGCGAGGAA+GGG + chr3_3:8423451-8423470 None:intergenic 55.0%
GTCTAACAACGTTCAGCGGC+TGG - chr3_3:8423927-8423946 Msa0440720:intron 55.0%
CTGTGGATCGCTTGCATGGT+TGG - chr3_3:8424854-8424873 Msa0440720:intron 55.0%
GCTTGCATGGTTGGACCTCT+TGG - chr3_3:8424863-8424882 Msa0440720:intron 55.0%
! TGGTTGGACCTCTTGGTGTG+TGG - chr3_3:8424870-8424889 Msa0440720:intron 55.0%
GGCCCCCAACCTACACAAAC+AGG - chr3_3:8421712-8421731 Msa0440720:three_prime_UTR 60.0%
!! CTCCCAACACCGGCTTGACT+TGG - chr3_3:8421744-8421763 Msa0440720:three_prime_UTR 60.0%
GAGAGAGGAACGAGCGAGGA+AGG + chr3_3:8423452-8423471 None:intergenic 60.0%
CAGAGAGAGAGGAACGAGCG+AGG + chr3_3:8423456-8423475 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 8421596 8426053 8421596 ID=Msa0440720;Name=Msa0440720
chr3_3 mRNA 8421596 8426053 8421596 ID=Msa0440720-mRNA-1;Parent=Msa0440720;Name=Msa0440720-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.5|0.28|0.85|0.5|0.57|7|177|297
chr3_3 exon 8421596 8421991 8421596 ID=Msa0440720-mRNA-1:exon:1783;Parent=Msa0440720-mRNA-1
chr3_3 exon 8422619 8422841 8422619 ID=Msa0440720-mRNA-1:exon:1782;Parent=Msa0440720-mRNA-1
chr3_3 exon 8422857 8422998 8422857 ID=Msa0440720-mRNA-1:exon:1781;Parent=Msa0440720-mRNA-1
chr3_3 exon 8423633 8423759 8423633 ID=Msa0440720-mRNA-1:exon:1780;Parent=Msa0440720-mRNA-1
chr3_3 exon 8424216 8424314 8424216 ID=Msa0440720-mRNA-1:exon:1779;Parent=Msa0440720-mRNA-1
chr3_3 exon 8425103 8425180 8425103 ID=Msa0440720-mRNA-1:exon:1778;Parent=Msa0440720-mRNA-1
chr3_3 exon 8426048 8426053 8426048 ID=Msa0440720-mRNA-1:exon:1777;Parent=Msa0440720-mRNA-1
chr3_3 CDS 8426048 8426053 8426048 ID=Msa0440720-mRNA-1:cds;Parent=Msa0440720-mRNA-1
chr3_3 CDS 8425103 8425180 8425103 ID=Msa0440720-mRNA-1:cds;Parent=Msa0440720-mRNA-1
chr3_3 CDS 8424216 8424314 8424216 ID=Msa0440720-mRNA-1:cds;Parent=Msa0440720-mRNA-1
chr3_3 CDS 8423633 8423759 8423633 ID=Msa0440720-mRNA-1:cds;Parent=Msa0440720-mRNA-1
chr3_3 CDS 8422857 8422998 8422857 ID=Msa0440720-mRNA-1:cds;Parent=Msa0440720-mRNA-1
chr3_3 CDS 8422619 8422841 8422619 ID=Msa0440720-mRNA-1:cds;Parent=Msa0440720-mRNA-1
chr3_3 CDS 8421773 8421991 8421773 ID=Msa0440720-mRNA-1:cds;Parent=Msa0440720-mRNA-1
chr3_3 three_prime_UTR 8421596 8421772 8421596 ID=Msa0440720-mRNA-1:three_prime_utr;Parent=Msa0440720-mRNA-1
Gene Sequence

>Msa0440720

ATGCATGAACCTAGTAAAGAATTGCCAAAGTTATTGGATAATGCTTCATATTTGATTCATTTGGCTGTTTTCGGTATTCTCGGGGTATTAACAAGATATACTCTGGACAAGTTATTTGGCCCTAGTGTCGGTCATGTGACTAGTGACCAAACCATTCTTTACCTTGACCTTCCTTCTAATATGTATCTGGCTGTTGCACTAACAACTGGTTACTTAGGGAGTCTAACAACGTTCAGCGGCTGGAATCAGAAAATGCTTGAACTCAGTGTTACTGGGAATTGGCTCTTTGTTGTGCTTGGCTTTCTAATAGGGTTATTTCTTGTTGCCTTTTCCATCATATTTGGGATAGAAACAGCTAAAGGTTTCAAGTGGCTTCTTATAAGGCTAAACTTGACTTCTTATAAGGCTAAACACTTAGCAGTTATAGTGGTGTTTTTGCTGATTTTAGGCTTTGGTGTATTAATGATTGCTGAATTCAAGAATGGTGAAAATGCTTATCTGTGGATCGCTTGCATGGTTGGACCTCTTGGTGTGTGGATTAGATGGCTTTTATCCCGATTAAATGGACACGGATTAGGATCAAGAGGTTTGTTGAGTTGGATGCGATTTGGAACTCTAATTGCAAATGTCTCTGCTGCTTGTATCAGGGCTGCACTTGCTACAACAAAGATATACGTGAACACCAGAGATTGTGATACTATTGTAAAAGGCATACAGTTTGGCCTGATGGGTTGTTTGAGCACTGTCTCTACCTTTGTTGCCGAGTTCAATGAAATGAGAGAAAGCGAGCATCCTTGGAGAGCATATGTTTATACTATAATCACAATTTGTTCCTCATTCTTTTTAGGGATCTTAATATACTGTGTGCCTATTTGGAGAATGGATGAATTATAA

Protein sequence

>Msa0440720

MHEPSKELPKLLDNASYLIHLAVFGILGVLTRYTLDKLFGPSVGHVTSDQTILYLDLPSNMYLAVALTTGYLGSLTTFSGWNQKMLELSVTGNWLFVVLGFLIGLFLVAFSIIFGIETAKGFKWLLIRLNLTSYKAKHLAVIVVFLLILGFGVLMIAEFKNGENAYLWIACMVGPLGVWIRWLLSRLNGHGLGSRGLLSWMRFGTLIANVSAACIRAALATTKIYVNTRDCDTIVKGIQFGLMGCLSTVSTFVAEFNEMRESEHPWRAYVYTIITICSSFFLGILIYCVPIWRMDEL*