AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0948460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0948460 MtrunA17_Chr6g0463451 51.256 199 2 6 121 238 75 259 1.91e-18 84.0
Msa0948460 MtrunA17_Chr6g0463451 49.239 197 6 6 138 253 75 258 1.95e-14 72.4
Msa0948460 MtrunA17_Chr6g0463491 96.296 54 2 0 1 54 1 54 7.63e-17 78.2
Msa0948460 MtrunA17_Chr1g0199111 38.991 218 52 6 1 137 27 244 1.13e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 125 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAATTGTTTGCTGAAATT+TGG 0.104183 6_3:-32718177 None:intergenic
GGTGAGTAGATGGGTGGAGG+TGG 0.282746 6_3:-32718451 None:intergenic
TGGTGGTGGTGGTGAGTAGA+TGG 0.299438 6_3:-32718461 None:intergenic
GGTGAGTAGACGGGTGGAGG+TGG 0.300627 6_3:-32718553 None:intergenic
GGTGAGTAGACGGGTGGAGG+AGG 0.319166 6_3:-32718502 None:intergenic
GGTGAGTAGACGGGTGGAGG+TGG 0.322204 6_3:-32718604 None:intergenic
GTAATTGTTTGCTGAAATTT+GGG 0.340465 6_3:-32718176 None:intergenic
GGTGACTTGTACTTGTAAAC+TGG 0.357024 6_3:-32718685 None:intergenic
GGTGACTTGTACTTGTAAAC+TGG 0.357024 6_3:-32718736 None:intergenic
GTGAGTAGATGGGTGGAGGT+GGG 0.363615 6_3:-32718450 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.368131 6_3:-32718658 None:intergenic
GGTGGTGAGTAGACAGGTGG+GGG 0.375946 6_3:-32718280 None:intergenic
GGTGGTGAGTAGACGGGAGG+AGG 0.376600 6_3:-32718709 None:intergenic
GGTGAGTAGACGGGTGGAGG+AGG 0.379141 6_3:-32718655 None:intergenic
GGTGACTTATATTTATAAAC+AGG 0.391402 6_3:-32718328 None:intergenic
TAAGAGTAATGGAGGCCATT+TGG 0.393938 6_3:-32718117 None:intergenic
GGTGGTGAGTAGACAGGTGG+GGG 0.401670 6_3:-32718301 None:intergenic
GGTGAGTAAGCAGGAGGAGG+AGG 0.413816 6_3:-32718808 None:intergenic
TACTTGTAAACTGGTGGTGG+TGG 0.421070 6_3:-32718247 None:intergenic
GGTGAGTAGACGGGAGGAGG+TGG 0.429690 6_3:-32718706 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.432340 6_3:-32718505 None:intergenic
TGAGTAGATGGGTGGAGGTG+GGG 0.437067 6_3:-32718449 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.439184 6_3:-32718304 None:intergenic
GGTGGGGAAGCGTATTTGTA+TGG 0.439487 6_3:-32718229 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.441074 6_3:-32718556 None:intergenic
GGTGGTGGTGGTGAGTAGAT+GGG 0.444448 6_3:-32718460 None:intergenic
GGAGACTTGTATTTGTAAAG+TGG 0.445599 6_3:-32718634 None:intergenic
GGAGACTTATACTTGTAAAC+TGG 0.445660 6_3:-32718787 None:intergenic
GGTGACTTATACTTGTAAAC+AGG 0.447648 6_3:-32718379 None:intergenic
GGTGATTTATACTTGTAAAC+TGG 0.448161 6_3:-32718256 None:intergenic
GGAAAATATGAGGTTCCAAA+TGG 0.456109 6_3:+32718102 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.458453 6_3:-32718481 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.460087 6_3:-32718532 None:intergenic
GGGGACTTGTACTTGTAAAC+TGG 0.460087 6_3:-32718583 None:intergenic
GGTGGAGGTGGTGAGTAGAC+GGG 0.461122 6_3:-32718613 None:intergenic
GGGGTGGTGAGTAGACAGGT+GGG 0.461876 6_3:-32718282 None:intergenic
GGAGGTGGTGAGTAGACGGG+TGG 0.465265 6_3:-32718661 None:intergenic
GTGAGTAGACGGGTGGAGGT+GGG 0.465366 6_3:-32718552 None:intergenic
GTGAGTAGACGGGTGGAGGT+GGG 0.465366 6_3:-32718603 None:intergenic
GGTGGTGAGTAGACGGGTGG+AGG 0.466798 6_3:-32718607 None:intergenic
GGTGGAGGTGGTGAGTAAGC+AGG 0.475649 6_3:-32718817 None:intergenic
GGTGGTGAGTAAGCAGGAGG+AGG 0.480025 6_3:-32718811 None:intergenic
GGGGACTTGTAATTGTAAAC+TGG 0.481748 6_3:-32718430 None:intergenic
GGTGGTGAGTAGACAGGTGG+AGG 0.483587 6_3:-32718403 None:intergenic
TACTTGTAAACTGGTGGTGG+TGG 0.483654 6_3:-32718472 None:intergenic
TACTTGTAAACTGGTGGTGG+TGG 0.483654 6_3:-32718574 None:intergenic
GGAGGTGGTGAGTAGACGGG+AGG 0.484213 6_3:-32718712 None:intergenic
GGGTGGTGAGTAGACAGGTG+GGG 0.492670 6_3:-32718281 None:intergenic
GGTGAATAGACAGGAGGAGG+TGG 0.493408 6_3:-32718757 None:intergenic
GAGGTGGTGAGTAGACAGGT+GGG 0.495523 6_3:-32718303 None:intergenic
GACTTGTATTTGTAAAGTGG+TGG 0.505674 6_3:-32718631 None:intergenic
TGGTGGAGGTGGTGAGTAGA+CGG 0.505748 6_3:-32718614 None:intergenic
GGTGAGTAGACAGGTGGAGG+TGG 0.506411 6_3:-32718400 None:intergenic
TATTTATAAACAGGTGGAGG+TGG 0.516161 6_3:-32718319 None:intergenic
TGAGTAGACGGGTGGAGGTG+GGG 0.516214 6_3:-32718551 None:intergenic
TGAGTAGACGGGTGGAGGTG+GGG 0.516214 6_3:-32718602 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.518842 6_3:-32718523 None:intergenic
GGTGGTGAGTAGATGGGTGG+AGG 0.521223 6_3:-32718454 None:intergenic
TAGATATAATGTGGTGGAGG+TGG 0.521642 6_3:-32718829 None:intergenic
GTGACTTGTACTTGTAAACT+GGG 0.523791 6_3:-32718684 None:intergenic
GTGACTTGTACTTGTAAACT+GGG 0.523791 6_3:-32718735 None:intergenic
GGTGGTGAATAGACAGGAGG+AGG 0.525145 6_3:-32718760 None:intergenic
GTGAGTAGACGGGTGGAGGA+GGG 0.525831 6_3:-32718501 None:intergenic
TGAGTAGACGGGTGGAGGAG+GGG 0.526670 6_3:-32718500 None:intergenic
GGTGGTGGTGGTGAGTAGAC+GGG 0.529501 6_3:-32718562 None:intergenic
TACTTGTAAACAGGTGGAGG+TGG 0.529739 6_3:-32718370 None:intergenic
GGTGGAGGTGGTGAGTAGAC+GGG 0.530290 6_3:-32718511 None:intergenic
TTGTACTTGTAAACTGGTGG+TGG 0.532190 6_3:-32718475 None:intergenic
TTGTACTTGTAAACTGGTGG+TGG 0.532190 6_3:-32718577 None:intergenic
GCGTATTTGTATGGCTTAGA+CGG 0.536718 6_3:-32718220 None:intergenic
TAGTAGTGGTAAGGAGGAGG+TGG 0.537644 6_3:-32718859 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.541551 6_3:-32718307 None:intergenic
TGGTGGTGGTGGTGAGTAGA+CGG 0.545412 6_3:-32718563 None:intergenic
TACTTGTAAACTGGTGGAGG+TGG 0.545632 6_3:-32718778 None:intergenic
CAATGCAATAGTAAGAGTAA+TGG 0.551028 6_3:-32718128 None:intergenic
ACCACCATTTAGTAGTGGTA+AGG 0.552807 6_3:-32718868 None:intergenic
GGTGGAGGTGGTGAGTAGAC+AGG 0.556465 6_3:-32718409 None:intergenic
TATGGCTTAGACGGTGGTGG+TGG 0.556589 6_3:-32718211 None:intergenic
GGAGGTGGTGAGTAGACTAG+TGG 0.557766 6_3:-32718355 None:intergenic
TTGTTTGCTGAAATTTGGGT+CGG 0.560745 6_3:-32718172 None:intergenic
TGGTGGAGGTGGTGAGTAGA+CGG 0.560893 6_3:-32718512 None:intergenic
GGTGGAGGTGGTGAATAGAC+AGG 0.569201 6_3:-32718766 None:intergenic
GGTGGTGGTGAGTAGATGGG+TGG 0.569801 6_3:-32718457 None:intergenic
TATTTGTAAAGTGGTGGAGG+TGG 0.570617 6_3:-32718625 None:intergenic
CTTGTAAACTGGTGGTGGTG+GGG 0.574955 6_3:-32718245 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.575994 6_3:-32718580 None:intergenic
TTATACTTGTAAACTGGTGG+TGG 0.577426 6_3:-32718250 None:intergenic
TTATATTTATAAACAGGTGG+AGG 0.579141 6_3:-32718322 None:intergenic
GACTTATACTTGTAAACTGG+TGG 0.580181 6_3:-32718784 None:intergenic
GACTTATATTTATAAACAGG+TGG 0.583330 6_3:-32718325 None:intergenic
GGTGAGTAGACTAGTGGAGG+TGG 0.583589 6_3:-32718349 None:intergenic
GGAGGTGGTGAGTAGACAGG+TGG 0.584342 6_3:-32718406 None:intergenic
GGTGGTGGTGAGTAGACGGG+TGG 0.586082 6_3:-32718559 None:intergenic
TGCAATAGTAAGAGTAATGG+AGG 0.586366 6_3:-32718125 None:intergenic
GACTTGTAATTGTAAACTGG+TGG 0.588392 6_3:-32718427 None:intergenic
TTATACTTGTAAACTGGTGG+AGG 0.588467 6_3:-32718781 None:intergenic
ACTTGTAAACTGGTGGTGGT+GGG 0.589086 6_3:-32718246 None:intergenic
TAATTGTAAACTGGTGGAGG+TGG 0.589972 6_3:-32718421 None:intergenic
GGTGGTGAGTAGACTAGTGG+AGG 0.593358 6_3:-32718352 None:intergenic
TTGTATTTGTAAAGTGGTGG+AGG 0.594079 6_3:-32718628 None:intergenic
GAGTAGATATAATGTGGTGG+AGG 0.594587 6_3:-32718832 None:intergenic
GGAGGTGGTGAGTAAGCAGG+AGG 0.598069 6_3:-32718814 None:intergenic
TTGTACTTGTAAACTGGTGG+AGG 0.598373 6_3:-32718526 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.601010 6_3:-32718529 None:intergenic
GACTTATACTTGTAAACAGG+TGG 0.601528 6_3:-32718376 None:intergenic
ATTTAGTAGTGGTAAGGAGG+AGG 0.602889 6_3:-32718862 None:intergenic
TTATACTTGTAAACAGGTGG+AGG 0.603042 6_3:-32718373 None:intergenic
GGAGGTGGTGAGTAGACGGG+TGG 0.603335 6_3:-32718508 None:intergenic
GGAGGTGGTGAGTAGACGGG+TGG 0.603335 6_3:-32718610 None:intergenic
TATTTGTATGGCTTAGACGG+TGG 0.608405 6_3:-32718217 None:intergenic
AGGTGGTGAGTAGACAGGTG+GGG 0.609414 6_3:-32718302 None:intergenic
CTTAGACGGTGGTGGTGGAG+AGG 0.611270 6_3:-32718206 None:intergenic
ACCATTTAGTAGTGGTAAGG+AGG 0.618262 6_3:-32718865 None:intergenic
TTGTATGGCTTAGACGGTGG+TGG 0.620123 6_3:-32718214 None:intergenic
TTGTAATTGTAAACTGGTGG+AGG 0.624133 6_3:-32718424 None:intergenic
CGTAAACCACCATTTAGTAG+TGG 0.625237 6_3:-32718873 None:intergenic
GGTGAAGAGTAGATATAATG+TGG 0.631465 6_3:-32718838 None:intergenic
GGAGGTGGTGAATAGACAGG+AGG 0.632836 6_3:-32718763 None:intergenic
GATTTATACTTGTAAACTGG+TGG 0.644397 6_3:-32718253 None:intergenic
GAAGAGTAGATATAATGTGG+TGG 0.646587 6_3:-32718835 None:intergenic
GACTTGTACTTGTAAACTGG+TGG 0.657109 6_3:-32718478 None:intergenic
GACTTGTACTTGTAAACTGG+GGG 0.672160 6_3:-32718682 None:intergenic
GACTTGTACTTGTAAACTGG+GGG 0.672160 6_3:-32718733 None:intergenic
TGACTTGTACTTGTAAACTG+GGG 0.718901 6_3:-32718683 None:intergenic
TGACTTGTACTTGTAAACTG+GGG 0.718901 6_3:-32718734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATTGTTTGCTGAAATTT+GGG - chr6_3:32718179-32718198 None:intergenic 25.0%
! TTATATTTATAAACAGGTGG+AGG - chr6_3:32718325-32718344 None:intergenic 25.0%
! GACTTATATTTATAAACAGG+TGG - chr6_3:32718328-32718347 None:intergenic 25.0%
! GGTGACTTATATTTATAAAC+AGG - chr6_3:32718331-32718350 None:intergenic 25.0%
!! GTAATTGTTTGCTGAAATTT+GGG - chr6_3:32718179-32718198 None:intergenic 25.0%
! TTATATTTATAAACAGGTGG+AGG - chr6_3:32718325-32718344 None:intergenic 25.0%
! GACTTATATTTATAAACAGG+TGG - chr6_3:32718328-32718347 None:intergenic 25.0%
! GGTGACTTATATTTATAAAC+AGG - chr6_3:32718331-32718350 None:intergenic 25.0%
CAATGCAATAGTAAGAGTAA+TGG - chr6_3:32718131-32718150 None:intergenic 30.0%
! CGTAATTGTTTGCTGAAATT+TGG - chr6_3:32718180-32718199 None:intergenic 30.0%
GATTTATACTTGTAAACTGG+TGG - chr6_3:32718256-32718275 None:intergenic 30.0%
GGTGATTTATACTTGTAAAC+TGG - chr6_3:32718259-32718278 None:intergenic 30.0%
CAATGCAATAGTAAGAGTAA+TGG - chr6_3:32718131-32718150 None:intergenic 30.0%
! CGTAATTGTTTGCTGAAATT+TGG - chr6_3:32718180-32718199 None:intergenic 30.0%
GATTTATACTTGTAAACTGG+TGG - chr6_3:32718256-32718275 None:intergenic 30.0%
GGTGATTTATACTTGTAAAC+TGG - chr6_3:32718259-32718278 None:intergenic 30.0%
TGCAATAGTAAGAGTAATGG+AGG - chr6_3:32718128-32718147 None:intergenic 35.0%
! TTGTTTGCTGAAATTTGGGT+CGG - chr6_3:32718175-32718194 None:intergenic 35.0%
TTATACTTGTAAACTGGTGG+TGG - chr6_3:32718253-32718272 None:intergenic 35.0%
TATTTATAAACAGGTGGAGG+TGG - chr6_3:32718322-32718341 None:intergenic 35.0%
TTATACTTGTAAACAGGTGG+AGG - chr6_3:32718376-32718395 None:intergenic 35.0%
GACTTATACTTGTAAACAGG+TGG - chr6_3:32718379-32718398 None:intergenic 35.0%
GGTGACTTATACTTGTAAAC+AGG - chr6_3:32718382-32718401 None:intergenic 35.0%
TTGTAATTGTAAACTGGTGG+AGG - chr6_3:32718427-32718446 None:intergenic 35.0%
GACTTGTAATTGTAAACTGG+TGG - chr6_3:32718430-32718449 None:intergenic 35.0%
TTGTATTTGTAAAGTGGTGG+AGG - chr6_3:32718631-32718650 None:intergenic 35.0%
GACTTGTATTTGTAAAGTGG+TGG - chr6_3:32718634-32718653 None:intergenic 35.0%
GGAGACTTGTATTTGTAAAG+TGG - chr6_3:32718637-32718656 None:intergenic 35.0%
! TGACTTGTACTTGTAAACTG+GGG - chr6_3:32718686-32718705 None:intergenic 35.0%
! GTGACTTGTACTTGTAAACT+GGG - chr6_3:32718687-32718706 None:intergenic 35.0%
! TGACTTGTACTTGTAAACTG+GGG - chr6_3:32718686-32718705 None:intergenic 35.0%
! GTGACTTGTACTTGTAAACT+GGG - chr6_3:32718687-32718706 None:intergenic 35.0%
TTATACTTGTAAACTGGTGG+AGG - chr6_3:32718253-32718272 None:intergenic 35.0%
GACTTATACTTGTAAACTGG+TGG - chr6_3:32718787-32718806 None:intergenic 35.0%
GGAGACTTATACTTGTAAAC+TGG - chr6_3:32718790-32718809 None:intergenic 35.0%
GAAGAGTAGATATAATGTGG+TGG - chr6_3:32718838-32718857 None:intergenic 35.0%
GGTGAAGAGTAGATATAATG+TGG - chr6_3:32718841-32718860 None:intergenic 35.0%
TGCAATAGTAAGAGTAATGG+AGG - chr6_3:32718128-32718147 None:intergenic 35.0%
! TTGTTTGCTGAAATTTGGGT+CGG - chr6_3:32718175-32718194 None:intergenic 35.0%
TTATACTTGTAAACTGGTGG+TGG - chr6_3:32718253-32718272 None:intergenic 35.0%
TATTTATAAACAGGTGGAGG+TGG - chr6_3:32718322-32718341 None:intergenic 35.0%
TTATACTTGTAAACAGGTGG+AGG - chr6_3:32718376-32718395 None:intergenic 35.0%
GACTTATACTTGTAAACAGG+TGG - chr6_3:32718379-32718398 None:intergenic 35.0%
GGTGACTTATACTTGTAAAC+AGG - chr6_3:32718382-32718401 None:intergenic 35.0%
TTGTAATTGTAAACTGGTGG+AGG - chr6_3:32718427-32718446 None:intergenic 35.0%
GACTTGTAATTGTAAACTGG+TGG - chr6_3:32718430-32718449 None:intergenic 35.0%
TTGTATTTGTAAAGTGGTGG+AGG - chr6_3:32718631-32718650 None:intergenic 35.0%
GACTTGTATTTGTAAAGTGG+TGG - chr6_3:32718634-32718653 None:intergenic 35.0%
GGAGACTTGTATTTGTAAAG+TGG - chr6_3:32718637-32718656 None:intergenic 35.0%
! TGACTTGTACTTGTAAACTG+GGG - chr6_3:32718686-32718705 None:intergenic 35.0%
! GTGACTTGTACTTGTAAACT+GGG - chr6_3:32718687-32718706 None:intergenic 35.0%
! TGACTTGTACTTGTAAACTG+GGG - chr6_3:32718686-32718705 None:intergenic 35.0%
! GTGACTTGTACTTGTAAACT+GGG - chr6_3:32718687-32718706 None:intergenic 35.0%
TTATACTTGTAAACTGGTGG+AGG - chr6_3:32718253-32718272 None:intergenic 35.0%
GACTTATACTTGTAAACTGG+TGG - chr6_3:32718787-32718806 None:intergenic 35.0%
GGAGACTTATACTTGTAAAC+TGG - chr6_3:32718790-32718809 None:intergenic 35.0%
GAAGAGTAGATATAATGTGG+TGG - chr6_3:32718838-32718857 None:intergenic 35.0%
GGTGAAGAGTAGATATAATG+TGG - chr6_3:32718841-32718860 None:intergenic 35.0%
! TAAGAGTAATGGAGGCCATT+TGG - chr6_3:32718120-32718139 None:intergenic 40.0%
TATTTGTATGGCTTAGACGG+TGG - chr6_3:32718220-32718239 None:intergenic 40.0%
GCGTATTTGTATGGCTTAGA+CGG - chr6_3:32718223-32718242 None:intergenic 40.0%
TAATTGTAAACTGGTGGAGG+TGG - chr6_3:32718424-32718443 None:intergenic 40.0%
GGGGACTTGTAATTGTAAAC+TGG - chr6_3:32718433-32718452 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+TGG - chr6_3:32718478-32718497 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+TGG - chr6_3:32718481-32718500 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+AGG - chr6_3:32718478-32718497 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+TGG - chr6_3:32718481-32718500 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+TGG - chr6_3:32718478-32718497 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+TGG - chr6_3:32718481-32718500 None:intergenic 40.0%
! TATTTGTAAAGTGGTGGAGG+TGG - chr6_3:32718628-32718647 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+GGG - chr6_3:32718481-32718500 None:intergenic 40.0%
! GGTGACTTGTACTTGTAAAC+TGG - chr6_3:32718688-32718707 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+GGG - chr6_3:32718481-32718500 None:intergenic 40.0%
! GGTGACTTGTACTTGTAAAC+TGG - chr6_3:32718688-32718707 None:intergenic 40.0%
! TAGATATAATGTGGTGGAGG+TGG - chr6_3:32718832-32718851 None:intergenic 40.0%
GAGTAGATATAATGTGGTGG+AGG - chr6_3:32718835-32718854 None:intergenic 40.0%
! TAAGAGTAATGGAGGCCATT+TGG - chr6_3:32718120-32718139 None:intergenic 40.0%
TATTTGTATGGCTTAGACGG+TGG - chr6_3:32718220-32718239 None:intergenic 40.0%
GCGTATTTGTATGGCTTAGA+CGG - chr6_3:32718223-32718242 None:intergenic 40.0%
TAATTGTAAACTGGTGGAGG+TGG - chr6_3:32718424-32718443 None:intergenic 40.0%
GGGGACTTGTAATTGTAAAC+TGG - chr6_3:32718433-32718452 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+TGG - chr6_3:32718478-32718497 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+TGG - chr6_3:32718481-32718500 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+AGG - chr6_3:32718478-32718497 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+TGG - chr6_3:32718481-32718500 None:intergenic 40.0%
TTGTACTTGTAAACTGGTGG+TGG - chr6_3:32718478-32718497 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+TGG - chr6_3:32718481-32718500 None:intergenic 40.0%
! TATTTGTAAAGTGGTGGAGG+TGG - chr6_3:32718628-32718647 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+GGG - chr6_3:32718481-32718500 None:intergenic 40.0%
! GGTGACTTGTACTTGTAAAC+TGG - chr6_3:32718688-32718707 None:intergenic 40.0%
GACTTGTACTTGTAAACTGG+GGG - chr6_3:32718481-32718500 None:intergenic 40.0%
! GGTGACTTGTACTTGTAAAC+TGG - chr6_3:32718688-32718707 None:intergenic 40.0%
! TAGATATAATGTGGTGGAGG+TGG - chr6_3:32718832-32718851 None:intergenic 40.0%
GAGTAGATATAATGTGGTGG+AGG - chr6_3:32718835-32718854 None:intergenic 40.0%
!! ACTTGTAAACTGGTGGTGGT+GGG - chr6_3:32718249-32718268 None:intergenic 45.0%
!! TACTTGTAAACTGGTGGTGG+TGG - chr6_3:32718250-32718269 None:intergenic 45.0%
TACTTGTAAACAGGTGGAGG+TGG - chr6_3:32718373-32718392 None:intergenic 45.0%
!! TACTTGTAAACTGGTGGTGG+TGG - chr6_3:32718250-32718269 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+TGG - chr6_3:32718484-32718503 None:intergenic 45.0%
TACTTGTAAACTGGTGGAGG+TGG - chr6_3:32718526-32718545 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+TGG - chr6_3:32718484-32718503 None:intergenic 45.0%
!! TACTTGTAAACTGGTGGTGG+TGG - chr6_3:32718250-32718269 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+TGG - chr6_3:32718484-32718503 None:intergenic 45.0%
TTGTACTTGTAAACTGGGGG+AGG - chr6_3:32718682-32718701 None:intergenic 45.0%
TTGTACTTGTAAACTGGGGG+AGG - chr6_3:32718682-32718701 None:intergenic 45.0%
TACTTGTAAACTGGTGGAGG+TGG - chr6_3:32718526-32718545 None:intergenic 45.0%
!! ACTTGTAAACTGGTGGTGGT+GGG - chr6_3:32718249-32718268 None:intergenic 45.0%
!! TACTTGTAAACTGGTGGTGG+TGG - chr6_3:32718250-32718269 None:intergenic 45.0%
TACTTGTAAACAGGTGGAGG+TGG - chr6_3:32718373-32718392 None:intergenic 45.0%
!! TACTTGTAAACTGGTGGTGG+TGG - chr6_3:32718250-32718269 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+TGG - chr6_3:32718484-32718503 None:intergenic 45.0%
TACTTGTAAACTGGTGGAGG+TGG - chr6_3:32718526-32718545 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+TGG - chr6_3:32718484-32718503 None:intergenic 45.0%
!! TACTTGTAAACTGGTGGTGG+TGG - chr6_3:32718250-32718269 None:intergenic 45.0%
GGGGACTTGTACTTGTAAAC+TGG - chr6_3:32718484-32718503 None:intergenic 45.0%
TTGTACTTGTAAACTGGGGG+AGG - chr6_3:32718682-32718701 None:intergenic 45.0%
TTGTACTTGTAAACTGGGGG+AGG - chr6_3:32718682-32718701 None:intergenic 45.0%
TACTTGTAAACTGGTGGAGG+TGG - chr6_3:32718526-32718545 None:intergenic 45.0%
TTGTATGGCTTAGACGGTGG+TGG - chr6_3:32718217-32718236 None:intergenic 50.0%
! GGTGGGGAAGCGTATTTGTA+TGG - chr6_3:32718232-32718251 None:intergenic 50.0%
!! CTTGTAAACTGGTGGTGGTG+GGG - chr6_3:32718248-32718267 None:intergenic 50.0%
TACTTGTAAACTGGGGGAGG+TGG - chr6_3:32718679-32718698 None:intergenic 50.0%
TACTTGTAAACTGGGGGAGG+TGG - chr6_3:32718679-32718698 None:intergenic 50.0%
TAGTAGTGGTAAGGAGGAGG+TGG - chr6_3:32718862-32718881 None:intergenic 50.0%
TTGTATGGCTTAGACGGTGG+TGG - chr6_3:32718217-32718236 None:intergenic 50.0%
! GGTGGGGAAGCGTATTTGTA+TGG - chr6_3:32718232-32718251 None:intergenic 50.0%
!! CTTGTAAACTGGTGGTGGTG+GGG - chr6_3:32718248-32718267 None:intergenic 50.0%
TACTTGTAAACTGGGGGAGG+TGG - chr6_3:32718679-32718698 None:intergenic 50.0%
TACTTGTAAACTGGGGGAGG+TGG - chr6_3:32718679-32718698 None:intergenic 50.0%
TAGTAGTGGTAAGGAGGAGG+TGG - chr6_3:32718862-32718881 None:intergenic 50.0%
! TATGGCTTAGACGGTGGTGG+TGG - chr6_3:32718214-32718233 None:intergenic 55.0%
AGGTGGTGAGTAGACAGGTG+GGG - chr6_3:32718305-32718324 None:intergenic 55.0%
GAGGTGGTGAGTAGACAGGT+GGG - chr6_3:32718306-32718325 None:intergenic 55.0%
GGTGAGTAGACTAGTGGAGG+TGG - chr6_3:32718352-32718371 None:intergenic 55.0%
GGTGGTGAGTAGACTAGTGG+AGG - chr6_3:32718355-32718374 None:intergenic 55.0%
GGAGGTGGTGAGTAGACTAG+TGG - chr6_3:32718358-32718377 None:intergenic 55.0%
TGAGTAGATGGGTGGAGGTG+GGG - chr6_3:32718452-32718471 None:intergenic 55.0%
GTGAGTAGATGGGTGGAGGT+GGG - chr6_3:32718453-32718472 None:intergenic 55.0%
!! GGTGGTGGTGGTGAGTAGAT+GGG - chr6_3:32718463-32718482 None:intergenic 55.0%
!! TGGTGGTGGTGGTGAGTAGA+TGG - chr6_3:32718464-32718483 None:intergenic 55.0%
TGGTGGAGGTGGTGAGTAGA+CGG - chr6_3:32718413-32718432 None:intergenic 55.0%
!! TGGTGGTGGTGGTGAGTAGA+CGG - chr6_3:32718464-32718483 None:intergenic 55.0%
TGGTGGAGGTGGTGAGTAGA+CGG - chr6_3:32718413-32718432 None:intergenic 55.0%
GGTGAATAGACAGGAGGAGG+TGG - chr6_3:32718760-32718779 None:intergenic 55.0%
GGTGGTGAATAGACAGGAGG+AGG - chr6_3:32718763-32718782 None:intergenic 55.0%
GGAGGTGGTGAATAGACAGG+AGG - chr6_3:32718766-32718785 None:intergenic 55.0%
GGTGGAGGTGGTGAATAGAC+AGG - chr6_3:32718769-32718788 None:intergenic 55.0%
! TATGGCTTAGACGGTGGTGG+TGG - chr6_3:32718214-32718233 None:intergenic 55.0%
AGGTGGTGAGTAGACAGGTG+GGG - chr6_3:32718305-32718324 None:intergenic 55.0%
GAGGTGGTGAGTAGACAGGT+GGG - chr6_3:32718306-32718325 None:intergenic 55.0%
GGTGAGTAGACTAGTGGAGG+TGG - chr6_3:32718352-32718371 None:intergenic 55.0%
GGTGGTGAGTAGACTAGTGG+AGG - chr6_3:32718355-32718374 None:intergenic 55.0%
GGAGGTGGTGAGTAGACTAG+TGG - chr6_3:32718358-32718377 None:intergenic 55.0%
TGAGTAGATGGGTGGAGGTG+GGG - chr6_3:32718452-32718471 None:intergenic 55.0%
GTGAGTAGATGGGTGGAGGT+GGG - chr6_3:32718453-32718472 None:intergenic 55.0%
!! GGTGGTGGTGGTGAGTAGAT+GGG - chr6_3:32718463-32718482 None:intergenic 55.0%
!! TGGTGGTGGTGGTGAGTAGA+TGG - chr6_3:32718464-32718483 None:intergenic 55.0%
TGGTGGAGGTGGTGAGTAGA+CGG - chr6_3:32718413-32718432 None:intergenic 55.0%
!! TGGTGGTGGTGGTGAGTAGA+CGG - chr6_3:32718464-32718483 None:intergenic 55.0%
TGGTGGAGGTGGTGAGTAGA+CGG - chr6_3:32718413-32718432 None:intergenic 55.0%
GGTGAATAGACAGGAGGAGG+TGG - chr6_3:32718760-32718779 None:intergenic 55.0%
GGTGGTGAATAGACAGGAGG+AGG - chr6_3:32718763-32718782 None:intergenic 55.0%
GGAGGTGGTGAATAGACAGG+AGG - chr6_3:32718766-32718785 None:intergenic 55.0%
GGTGGAGGTGGTGAATAGAC+AGG - chr6_3:32718769-32718788 None:intergenic 55.0%
!! CTTAGACGGTGGTGGTGGAG+AGG - chr6_3:32718209-32718228 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+GGG - chr6_3:32718283-32718302 None:intergenic 60.0%
GGGTGGTGAGTAGACAGGTG+GGG - chr6_3:32718284-32718303 None:intergenic 60.0%
GGGGTGGTGAGTAGACAGGT+GGG - chr6_3:32718285-32718304 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+GGG - chr6_3:32718283-32718302 None:intergenic 60.0%
GGAGGTGGTGAGTAGACAGG+TGG - chr6_3:32718307-32718326 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+AGG - chr6_3:32718310-32718329 None:intergenic 60.0%
GGTGAGTAGACAGGTGGAGG+TGG - chr6_3:32718403-32718422 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+AGG - chr6_3:32718283-32718302 None:intergenic 60.0%
GGAGGTGGTGAGTAGACAGG+TGG - chr6_3:32718307-32718326 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+AGG - chr6_3:32718310-32718329 None:intergenic 60.0%
GGTGAGTAGATGGGTGGAGG+TGG - chr6_3:32718454-32718473 None:intergenic 60.0%
GGTGGTGAGTAGATGGGTGG+AGG - chr6_3:32718457-32718476 None:intergenic 60.0%
! GGTGGTGGTGAGTAGATGGG+TGG - chr6_3:32718460-32718479 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGAG+GGG - chr6_3:32718503-32718522 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGA+GGG - chr6_3:32718504-32718523 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+GGG - chr6_3:32718310-32718329 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGTG+GGG - chr6_3:32718554-32718573 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGT+GGG - chr6_3:32718555-32718574 None:intergenic 60.0%
!! GGTGGTGGTGGTGAGTAGAC+GGG - chr6_3:32718565-32718584 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGTG+GGG - chr6_3:32718554-32718573 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGT+GGG - chr6_3:32718555-32718574 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+GGG - chr6_3:32718310-32718329 None:intergenic 60.0%
TGGGGGAGGTGGTGAGTAGA+CGG - chr6_3:32718668-32718687 None:intergenic 60.0%
TGGGGGAGGTGGTGAGTAGA+CGG - chr6_3:32718668-32718687 None:intergenic 60.0%
GGTGAGTAAGCAGGAGGAGG+AGG - chr6_3:32718811-32718830 None:intergenic 60.0%
GGTGGTGAGTAAGCAGGAGG+AGG - chr6_3:32718814-32718833 None:intergenic 60.0%
GGAGGTGGTGAGTAAGCAGG+AGG - chr6_3:32718817-32718836 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAAGC+AGG - chr6_3:32718820-32718839 None:intergenic 60.0%
!! CTTAGACGGTGGTGGTGGAG+AGG - chr6_3:32718209-32718228 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+GGG - chr6_3:32718283-32718302 None:intergenic 60.0%
GGGTGGTGAGTAGACAGGTG+GGG - chr6_3:32718284-32718303 None:intergenic 60.0%
GGGGTGGTGAGTAGACAGGT+GGG - chr6_3:32718285-32718304 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+GGG - chr6_3:32718283-32718302 None:intergenic 60.0%
GGAGGTGGTGAGTAGACAGG+TGG - chr6_3:32718307-32718326 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+AGG - chr6_3:32718310-32718329 None:intergenic 60.0%
GGTGAGTAGACAGGTGGAGG+TGG - chr6_3:32718403-32718422 None:intergenic 60.0%
GGTGGTGAGTAGACAGGTGG+AGG - chr6_3:32718283-32718302 None:intergenic 60.0%
GGAGGTGGTGAGTAGACAGG+TGG - chr6_3:32718307-32718326 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+AGG - chr6_3:32718310-32718329 None:intergenic 60.0%
GGTGAGTAGATGGGTGGAGG+TGG - chr6_3:32718454-32718473 None:intergenic 60.0%
GGTGGTGAGTAGATGGGTGG+AGG - chr6_3:32718457-32718476 None:intergenic 60.0%
! GGTGGTGGTGAGTAGATGGG+TGG - chr6_3:32718460-32718479 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGAG+GGG - chr6_3:32718503-32718522 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGA+GGG - chr6_3:32718504-32718523 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+GGG - chr6_3:32718310-32718329 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGTG+GGG - chr6_3:32718554-32718573 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGT+GGG - chr6_3:32718555-32718574 None:intergenic 60.0%
!! GGTGGTGGTGGTGAGTAGAC+GGG - chr6_3:32718565-32718584 None:intergenic 60.0%
TGAGTAGACGGGTGGAGGTG+GGG - chr6_3:32718554-32718573 None:intergenic 60.0%
GTGAGTAGACGGGTGGAGGT+GGG - chr6_3:32718555-32718574 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAGAC+GGG - chr6_3:32718310-32718329 None:intergenic 60.0%
TGGGGGAGGTGGTGAGTAGA+CGG - chr6_3:32718668-32718687 None:intergenic 60.0%
TGGGGGAGGTGGTGAGTAGA+CGG - chr6_3:32718668-32718687 None:intergenic 60.0%
GGTGAGTAAGCAGGAGGAGG+AGG - chr6_3:32718811-32718830 None:intergenic 60.0%
GGTGGTGAGTAAGCAGGAGG+AGG - chr6_3:32718814-32718833 None:intergenic 60.0%
GGAGGTGGTGAGTAAGCAGG+AGG - chr6_3:32718817-32718836 None:intergenic 60.0%
GGTGGAGGTGGTGAGTAAGC+AGG - chr6_3:32718820-32718839 None:intergenic 60.0%
GGTGAGTAGACAGGTGGGGG+TGG - chr6_3:32718280-32718299 None:intergenic 65.0%
GGGGGTGGTGAGTAGACAGG+TGG - chr6_3:32718286-32718305 None:intergenic 65.0%
GGTGGGGGTGGTGAGTAGAC+AGG - chr6_3:32718289-32718308 None:intergenic 65.0%
GGTGAGTAGACAGGTGGGGG+TGG - chr6_3:32718280-32718299 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+AGG - chr6_3:32718505-32718524 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - chr6_3:32718508-32718527 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+TGG - chr6_3:32718511-32718530 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+TGG - chr6_3:32718505-32718524 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - chr6_3:32718508-32718527 None:intergenic 65.0%
! GGTGGTGGTGAGTAGACGGG+TGG - chr6_3:32718562-32718581 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+TGG - chr6_3:32718505-32718524 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - chr6_3:32718508-32718527 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+TGG - chr6_3:32718511-32718530 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+AGG - chr6_3:32718505-32718524 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - chr6_3:32718508-32718527 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+TGG - chr6_3:32718511-32718530 None:intergenic 65.0%
GGGGGAGGTGGTGAGTAGAC+GGG - chr6_3:32718667-32718686 None:intergenic 65.0%
GGTGAGTAGACGGGAGGAGG+TGG - chr6_3:32718709-32718728 None:intergenic 65.0%
GGTGGTGAGTAGACGGGAGG+AGG - chr6_3:32718712-32718731 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+AGG - chr6_3:32718511-32718530 None:intergenic 65.0%
GGGGGAGGTGGTGAGTAGAC+GGG - chr6_3:32718667-32718686 None:intergenic 65.0%
GGTGAGTAGACAGGTGGGGG+TGG - chr6_3:32718280-32718299 None:intergenic 65.0%
GGGGGTGGTGAGTAGACAGG+TGG - chr6_3:32718286-32718305 None:intergenic 65.0%
GGTGGGGGTGGTGAGTAGAC+AGG - chr6_3:32718289-32718308 None:intergenic 65.0%
GGTGAGTAGACAGGTGGGGG+TGG - chr6_3:32718280-32718299 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+AGG - chr6_3:32718505-32718524 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - chr6_3:32718508-32718527 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+TGG - chr6_3:32718511-32718530 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+TGG - chr6_3:32718505-32718524 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - chr6_3:32718508-32718527 None:intergenic 65.0%
! GGTGGTGGTGAGTAGACGGG+TGG - chr6_3:32718562-32718581 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+TGG - chr6_3:32718505-32718524 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - chr6_3:32718508-32718527 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+TGG - chr6_3:32718511-32718530 None:intergenic 65.0%
GGTGAGTAGACGGGTGGAGG+AGG - chr6_3:32718505-32718524 None:intergenic 65.0%
GGTGGTGAGTAGACGGGTGG+AGG - chr6_3:32718508-32718527 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+TGG - chr6_3:32718511-32718530 None:intergenic 65.0%
GGGGGAGGTGGTGAGTAGAC+GGG - chr6_3:32718667-32718686 None:intergenic 65.0%
GGTGAGTAGACGGGAGGAGG+TGG - chr6_3:32718709-32718728 None:intergenic 65.0%
GGTGGTGAGTAGACGGGAGG+AGG - chr6_3:32718712-32718731 None:intergenic 65.0%
GGAGGTGGTGAGTAGACGGG+AGG - chr6_3:32718511-32718530 None:intergenic 65.0%
GGGGGAGGTGGTGAGTAGAC+GGG - chr6_3:32718667-32718686 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 32718109 32718882 32718109 ID=Msa0948460;Name=Msa0948460
chr6_3 mRNA 32718109 32718882 32718109 ID=Msa0948460-mRNA-1;Parent=Msa0948460;Name=Msa0948460-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|257
chr6_3 exon 32718109 32718882 32718109 ID=Msa0948460-mRNA-1:exon:8518;Parent=Msa0948460-mRNA-1
chr6_3 CDS 32718109 32718882 32718109 ID=Msa0948460-mRNA-1:cds;Parent=Msa0948460-mRNA-1
Gene Sequence

>Msa0948460

ATGAGGTTCCAAATGGCCTCCATTACTCTTACTATTGCATTGACAATAATCTCTCTTAGCTTGCCGACCCAAATTTCAGCAAACAATTACGTCTATTCCTCTCCACCACCACCGTCTAAGCCATACAAATACGCTTCCCCACCACCACCAGTTTACAAGTATAAATCACCACCCCCACCTGTCTACTCACCACCCCCACCTGTCTACTCACCACCTCCACCTGTTTATAAATATAAGTCACCACCTCCACTAGTCTACTCACCACCTCCACCTGTTTACAAGTATAAGTCACCACCTCCACCTGTCTACTCACCACCTCCACCAGTTTACAATTACAAGTCCCCACCTCCACCCATCTACTCACCACCACCACCAGTTTACAAGTACAAGTCCCCTCCTCCACCCGTCTACTCACCACCTCCACCAGTTTACAAGTACAAGTCCCCACCTCCACCCGTCTACTCACCACCACCACCAGTTTACAAGTACAAGTCCCCACCTCCACCCGTCTACTCACCACCTCCACCACTTTACAAATACAAGTCTCCTCCTCCACCCGTCTACTCACCACCTCCCCCAGTTTACAAGTACAAGTCACCACCTCCTCCCGTCTACTCACCACCTCCCCCAGTTTACAAGTACAAGTCACCACCTCCTCCTGTCTATTCACCACCTCCACCAGTTTACAAGTATAAGTCTCCTCCTCCTCCTGCTTACTCACCACCTCCACCACATTATATCTACTCTTCACCACCTCCTCCTTACCACTACTAA
Protein sequence

>Msa0948460

MRFQMASITLTIALTIISLSLPTQISANNYVYSSPPPPSKPYKYASPPPPVYKYKSPPPPVYSPPPPVYSPPPPVYKYKSPPPLVYSPPPPVYKYKSPPPPVYSPPPPVYNYKSPPPPIYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPLYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPVYSPPPPVYKYKSPPPPAYSPPPPHYIYSSPPPPYHY*